Citrus Sinensis ID: 009862
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPQ8 | 729 | Monosaccharide-sensing pr | no | no | 0.969 | 0.695 | 0.673 | 0.0 | |
| Q9SD00 | 729 | Monosaccharide-sensing pr | no | no | 0.934 | 0.670 | 0.553 | 1e-153 | |
| Q96290 | 734 | Monosaccharide-sensing pr | no | no | 0.959 | 0.683 | 0.597 | 1e-152 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | no | 0.432 | 0.280 | 0.304 | 2e-25 | |
| B4MYA4 | 872 | Facilitated trehalose tra | N/A | no | 0.380 | 0.228 | 0.331 | 4e-25 | |
| B4P624 | 856 | Facilitated trehalose tra | N/A | no | 0.390 | 0.238 | 0.304 | 1e-24 | |
| B3MG58 | 866 | Facilitated trehalose tra | N/A | no | 0.390 | 0.235 | 0.317 | 3e-24 | |
| Q291H8 | 868 | Facilitated trehalose tra | yes | no | 0.376 | 0.226 | 0.325 | 4e-24 | |
| B4GAP7 | 869 | Facilitated trehalose tra | N/A | no | 0.376 | 0.226 | 0.325 | 4e-24 | |
| B4QBN2 | 857 | Facilitated trehalose tra | N/A | no | 0.426 | 0.260 | 0.305 | 9e-24 |
| >sp|Q8LPQ8|MSSP2_ARATH Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/524 (67%), Positives = 427/524 (81%), Gaps = 17/524 (3%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLGIGGET+IEEYIIGP DE+ D + +KD+I+LYG EEGLSWVA+PV G S
Sbjct: 218 MALLVEGLGIGGETTIEEYIIGPADEVTDDHDIAVDKDQIKLYGAEEGLSWVARPVKGGS 277
Query: 61 SLALVSRQGS-LANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVK 119
+++++SR GS ++ + L+DPLVTLFGSVHEK+P++GSMRS LFP FGSMFS + +
Sbjct: 278 TMSVLSRHGSTMSRRQGSLIDPLVTLFGSVHEKMPDTGSMRSALFPHFGSMFSVGGNQPR 337
Query: 120 HDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRH 179
H+ WDEE+L EGED+ SD G DS+D+LHSPLISRQTTSMEKDM +HG+ LS RH
Sbjct: 338 HEDWDEENLVGEGEDYPSD-HGDDSEDDLHSPLISRQTTSMEKDMPHT-AHGT-LSTFRH 394
Query: 180 SSLMQGS-GEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLV 238
S +QG+ GE GS GIGGGWQ+AWKWTERE E G+KE EG PGSRRGS+V
Sbjct: 395 GSQVQGAQGEGAGSMGIGGGWQVAWKWTEREDESGQKE----------EGFPGSRRGSIV 444
Query: 239 SVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAG 298
S+PG D E +++QA+ALVSQPALYSK+L+ +H +GPAMVHPSET +KG W L + G
Sbjct: 445 SLPGGDGTGEADFVQASALVSQPALYSKDLLKEHTIGPAMVHPSET-TKGSIWHDLHDPG 503
Query: 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358
VKRAL+VGVG+QILQQFSGINGVLYYTPQILEQAGV +LLSN+GISS SAS LISA TTF
Sbjct: 504 VKRALVVGVGLQILQQFSGINGVLYYTPQILEQAGVGILLSNMGISSSSASLLISALTTF 563
Query: 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVII 418
+MLP I VAM+LMD++GRR LLLTTIP+LI SL++LVIS + + S ++ A +ST V++
Sbjct: 564 VMLPAIAVAMRLMDLSGRRTLLLTTIPILIASLLVLVISNLVHMNS-IVHAVLSTVSVVL 622
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
YFC FV +GP PNILC+EIFPT+VRGICIAICA+ +WICDIIVTY+LPV+L SIGLAG
Sbjct: 623 YFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICDIIVTYSLPVLLKSIGLAGV 682
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
FG+YA+VC ISWVFVF++VPETKGMPLEVITEFF+VGARQA A
Sbjct: 683 FGMYAIVCCISWVFVFIKVPETKGMPLEVITEFFSVGARQAEAA 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SD00|MSSP3_ARATH Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 298/538 (55%), Positives = 368/538 (68%), Gaps = 49/538 (9%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
+ALLVEGLG+G +TSIEEY+IGP +E +G KD+I+LYGPE+G SW+AKPV GQS
Sbjct: 218 LALLVEGLGVGKDTSIEEYVIGPDNEENEGGNELPRKDQIKLYGPEDGQSWMAKPVKGQS 277
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPE---SGSMRSTLFPTFGSMFSTAEHH 117
SLAL SRQGS+ + LMDPLVTLFGS+HE LP + S RS LFP GS+
Sbjct: 278 SLALASRQGSMLPRGGSLMDPLVTLFGSIHENLPSENMNASSRSMLFPNMGSILGMMGR- 336
Query: 118 VKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMR 177
+ WD E R ED + D D+NL+SPL+S QTT E D + G++ R
Sbjct: 337 -QESQWDPE---RNNEDSS------DQDENLNSPLLSPQTT--EPDDYHQRTVGTM--HR 382
Query: 178 RHSSL-MQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKK-EGGFKRIYLHQE-------G 228
R SSL M GE +T IGGGWQLAWK+ ++ G DGK+ GG +R+Y+H+E
Sbjct: 383 RQSSLFMANVGETATATSIGGGWQLAWKYNDKVGADGKRVNGGLQRMYIHEETANNNTNN 442
Query: 229 VPGSRRGSLVSV----PGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSET 284
+P SRRGSL+S G+D + Y+QAAALVSQ + M G + P E
Sbjct: 443 IPFSRRGSLLSFHPEGDGHD--QVNGYVQAAALVSQAS------MMPGGKGETAMLPKEV 494
Query: 285 ASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGIS 344
GP W L E GVKRAL+VGVG+QILQQF+GINGV+YYTPQILE+ GV LL+NLGIS
Sbjct: 495 -KDGPGWRELKEPGVKRALMVGVGLQILQQFAGINGVMYYTPQILEETGVSSLLTNLGIS 553
Query: 345 SESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLIS 404
+ESAS LISA TT LMLPCI V+M R L+L+TIP+LI+SL+ LVI + L
Sbjct: 554 AESASLLISALTTLLMLPCILVSM--------RSLMLSTIPILILSLVTLVIGSLVNLGG 605
Query: 405 PVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTY 464
+ A ISTA V +Y CFV +G IPNILC+EIFPT VRG+CI ICA+ +WICDIIVTY
Sbjct: 606 SI-NALISTASVTVYLSCFVMGFGAIPNILCSEIFPTSVRGLCITICALTFWICDIIVTY 664
Query: 465 TLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
TLPVML SIG+AG FG+YA+VC ++WVFV+L+VPETKGMPLEVI+EFF+VGA+Q A
Sbjct: 665 TLPVMLKSIGIAGVFGIYAIVCAVAWVFVYLKVPETKGMPLEVISEFFSVGAKQQDAA 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q96290|MSSP1_ARATH Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/534 (59%), Positives = 394/534 (73%), Gaps = 32/534 (5%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGE-EPTDEKDKIRLYGPEEGLSWVAKPVTGQ 59
MALLVEGL IGGE ++E+ ++ D D E DE ++RLYG E S++A+PV Q
Sbjct: 216 MALLVEGLDIGGEKTMEDLLVTLEDHEGDDTLETVDEDGQMRLYGTHENQSYLARPVPEQ 275
Query: 60 -SSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESG-SMRSTLFPTFGSMFSTAEH- 116
SSL L SR GSLANQS+ L DPLV LFGS+HEK+PE+G + RS +FP FGSMFST
Sbjct: 276 NSSLGLRSRHGSLANQSMILKDPLVNLFGSLHEKMPEAGGNTRSGIFPHFGSMFSTTADA 335
Query: 117 -HVKHDHWD---EESLQREGEDHASDIAGADSDDN---LHSPLISRQTTSMEKDMAAPPS 169
H K HW+ E ++ +D+A+D D DD+ L SPL+SRQTTSM+KDM P+
Sbjct: 336 PHGKPAHWEKDIESHYNKDNDDYATDDGAGDDDDSDNDLRSPLMSRQTTSMDKDMIPHPT 395
Query: 170 HGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGV 229
GS LSMRRHS+LMQG+GE+ S GIGGGW + +++ E +KR YL ++G
Sbjct: 396 SGSTLSMRRHSTLMQGNGES--SMGIGGGWHMGYRYENDE---------YKRYYLKEDGA 444
Query: 230 PGSRRGSLVSVPGYDVPEEG-EYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKG 288
SRRGS++S+PG P+ G YI A+ALVS+ L K + G AMV P + A+ G
Sbjct: 445 E-SRRGSIISIPGG--PDGGGSYIHASALVSRSVLGPKSVH-----GSAMVPPEKIAASG 496
Query: 289 PSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESA 348
P W+ALLE GVKRAL+VGVGIQILQQFSGINGVLYYTPQILE+AGV++LLS+LG+SS SA
Sbjct: 497 PLWSALLEPGVKRALVVGVGIQILQQFSGINGVLYYTPQILERAGVDILLSSLGLSSISA 556
Query: 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLK 408
SFLIS TT LMLP I VAM+LMDV+GRR LLL TIPVLIVSL++LVISE + IS V+
Sbjct: 557 SFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVLIVSLVVLVISELIH-ISKVVN 615
Query: 409 AGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPV 468
A +ST CV++YFC FV YGPIPNILC+EIFPT+VRG+CIAICAM +WI DIIVTY+LPV
Sbjct: 616 AALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCIAICAMVFWIGDIIVTYSLPV 675
Query: 469 MLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
+LSSIGL G F +YA VC ISW+FV+++VPETKGMPLEVIT++FA GA+ A
Sbjct: 676 LLSSIGLVGVFSIYAAVCVISWIFVYMKVPETKGMPLEVITDYFAFGAQAQASA 729
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 20/246 (8%)
Query: 270 DQHPVGPAMVHPSETASKGPSWAALLEAGVK---RALLVGVGIQILQQFSGINGVLYYTP 326
D P ++ + A + S +A+L+ K + LL+ +G+ QQ SGIN V++YT
Sbjct: 550 DVDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGINAVIFYTV 609
Query: 327 QILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPV 386
QI + AG + E+ +I F+ +A L+D GR+ LL +
Sbjct: 610 QIFQDAGSTI--------DENLCTIIVGVVNFI---ATFIATMLIDRLGRKMLLYISDVA 658
Query: 387 LIVSLIIL----VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK 442
+I++L+ L + + Q +S V + A +IY F +GPIP ++ EI P K
Sbjct: 659 MIITLMTLGGFFYVKNSGQDVSQV--GWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGK 716
Query: 443 VRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502
+RG ++ W C IVT T ++++IG G F ++ +C I FV VPET+G
Sbjct: 717 IRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQG 776
Query: 503 MPLEVI 508
LE I
Sbjct: 777 KSLEDI 782
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4MYA4|TRET1_DROWI Facilitated trehalose transporter Tret1 OS=Drosophila willistoni GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQ SGIN V++YT QI + AG + + +I
Sbjct: 642 LLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTI--------DGNVCTIIV 693
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGIST 413
F M IG+ L+D AGR+ LL + +I++L +L KAGI
Sbjct: 694 GIVNF-MATFIGII--LIDRAGRKILLYVSNVAMIITLFVLG-----GFFYCKDKAGIDV 745
Query: 414 A--------CVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYT 465
+ C ++Y F +GPIP ++ EI P K+RG ++ W C +VT T
Sbjct: 746 SNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKT 805
Query: 466 LPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
ML IG GAF ++ +CFI FV + VPET+G LE I
Sbjct: 806 FQDMLDVIGSYGAFWLFGAICFIGLFFVIIYVPETQGKTLEDI 848
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila willistoni (taxid: 7260) |
| >sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 13/217 (5%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQFSGIN V++YT QI + AG + + +I
Sbjct: 627 LLKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTI--------DGNVCTIIV 678
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLK--AGI 411
F+ + + L+D AGR+ LL + ++++L +L + P + +
Sbjct: 679 GVVNFV---ATFIGILLIDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWL 735
Query: 412 STACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
C ++Y F +GPIP ++ EI P K+RG ++ W C +VT T ++
Sbjct: 736 PLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVG 795
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
S+G GAF ++ +CF+ FV L VPET+G LE I
Sbjct: 796 SLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDI 832
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila yakuba (taxid: 7245) |
| >sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQ SGIN V++YT I + AG + + +I
Sbjct: 637 LLKRSNFKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTI--------DGNVCTIIV 688
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLK--AGI 411
FL +A L+D AGR+ LL + +I++L +L + P + +
Sbjct: 689 GVVNFL---ATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKAHGPDVSHLGWL 745
Query: 412 STACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
+C +IY F +GPIP ++ EI P K+RG ++ W C +VT T M+
Sbjct: 746 PLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDMID 805
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
+G GAF ++ +CFI FV L VPET+G LE I
Sbjct: 806 VMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDI 842
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila ananassae (taxid: 7217) |
| >sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 27/224 (12%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNL-----GISSESA 348
LL+ + L + +G+ QQ SGIN V++YT I + AG + NL GI + A
Sbjct: 639 LLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAG-STIDGNLCTIIVGIVNFMA 697
Query: 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL----VISETLQLIS 404
+F +A L+D AGR+ LL + +I++L +L Q +S
Sbjct: 698 TF---------------IATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVS 742
Query: 405 PVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTY 464
+ + +C +IY F +GPIP ++ EI P+K+RG ++ W C +VT
Sbjct: 743 QL--GWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTK 800
Query: 465 TLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
T M+ +G GAF ++ +CFI FV L VPET+G LE I
Sbjct: 801 TFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 844
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 27/224 (12%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNL-----GISSESA 348
LL+ + L + +G+ QQ SGIN V++YT I + AG + NL GI + A
Sbjct: 640 LLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAG-STIDGNLCTIIVGIVNFMA 698
Query: 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL----VISETLQLIS 404
+F +A L+D AGR+ LL + +I++L +L Q +S
Sbjct: 699 TF---------------IATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVS 743
Query: 405 PVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTY 464
+ + +C +IY F +GPIP ++ EI P+K+RG ++ W C +VT
Sbjct: 744 QL--GWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSAASVATAFNWSCTFVVTK 801
Query: 465 TLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
T M+ +G GAF ++ +CFI FV L VPET+G LE I
Sbjct: 802 TFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLEDI 845
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila persimilis (taxid: 7234) |
| >sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 26/249 (10%)
Query: 270 DQHPVGPAMVHPSETASKGPSWAALLEAGVK---RALLVGVGIQILQQFSGINGVLYYTP 326
D P ++ A + S +LE + + L + +G+ QQFSGIN V++YT
Sbjct: 601 DVEPELKGLMRSQADADRQASRNTMLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTV 660
Query: 327 QILEQAGVEVLLSNL-----GISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 381
QI + AG + SNL GI ++ F TF+ + L+D GR+ LL
Sbjct: 661 QIFKDAG-STIDSNLCTIIVGI--------VNFFATFM-------GILLIDRLGRKILLY 704
Query: 382 TTIPVLIVSLIILVISETLQLISPVLK--AGISTACVIIYFCCFVAAYGPIPNILCAEIF 439
+ +I++L IL + P + + C +IY F +GPIP ++ EI
Sbjct: 705 ISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEIL 764
Query: 440 PTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPE 499
P K+RG ++ W C +VT T + ++G GAF ++ +CF+ FV + VPE
Sbjct: 765 PAKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVIIYVPE 824
Query: 500 TKGMPLEVI 508
T+G LE I
Sbjct: 825 TQGKTLEDI 833
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila simulans (taxid: 7240) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| 255539302 | 739 | sugar transporter, putative [Ricinus com | 0.998 | 0.706 | 0.833 | 0.0 | |
| 224061849 | 738 | predicted protein [Populus trichocarpa] | 0.977 | 0.692 | 0.818 | 0.0 | |
| 224086094 | 738 | predicted protein [Populus trichocarpa] | 0.990 | 0.701 | 0.824 | 0.0 | |
| 356508504 | 738 | PREDICTED: monosaccharide-sensing protei | 0.986 | 0.699 | 0.789 | 0.0 | |
| 225457626 | 740 | PREDICTED: monosaccharide-sensing protei | 0.994 | 0.702 | 0.791 | 0.0 | |
| 356517193 | 737 | PREDICTED: monosaccharide-sensing protei | 0.986 | 0.700 | 0.789 | 0.0 | |
| 147815142 | 740 | hypothetical protein VITISV_024656 [Viti | 0.994 | 0.702 | 0.790 | 0.0 | |
| 61613105 | 740 | hexose transporter 6 [Vitis vinifera] | 0.994 | 0.702 | 0.782 | 0.0 | |
| 449453003 | 729 | PREDICTED: monosaccharide-sensing protei | 0.975 | 0.699 | 0.777 | 0.0 | |
| 255559173 | 740 | sugar transporter, putative [Ricinus com | 0.992 | 0.701 | 0.766 | 0.0 |
| >gi|255539302|ref|XP_002510716.1| sugar transporter, putative [Ricinus communis] gi|223551417|gb|EEF52903.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/523 (83%), Positives = 474/523 (90%), Gaps = 1/523 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLGIGGETSIEEYIIGPGDEL D EPT EKD+I+LYGPE GLSWVAKPVTGQS
Sbjct: 216 MALLVEGLGIGGETSIEEYIIGPGDELPDDHEPTAEKDRIKLYGPEAGLSWVAKPVTGQS 275
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKH 120
SLALVSR GS+ N+SVPLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFSTAE H KH
Sbjct: 276 SLALVSRHGSMVNKSVPLMDPLVTLFGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHAKH 335
Query: 121 DHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHS 180
+HWDEESLQREGE + S+ AG DSDDNLHSPLISRQTTSMEKDM PPSHGSILSMRRHS
Sbjct: 336 EHWDEESLQREGEGYTSEAAGEDSDDNLHSPLISRQTTSMEKDMPPPPSHGSILSMRRHS 395
Query: 181 SLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSV 240
SLMQG+GEAV STGIGGGWQLAWKW+EREGEDGKKEGGFKR+YLHQEG PGSRRGSLVS
Sbjct: 396 SLMQGTGEAVSSTGIGGGWQLAWKWSEREGEDGKKEGGFKRVYLHQEGAPGSRRGSLVSF 455
Query: 241 PGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVK 300
PG DVP EGEY+QAAALVSQPALYSKEL+DQHPVGPAMVHP+ETA KGP WAALL+ GVK
Sbjct: 456 PGGDVPAEGEYVQAAALVSQPALYSKELLDQHPVGPAMVHPAETAKKGPIWAALLDPGVK 515
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
RAL+VG+GIQILQQFSGI G+LYYTPQILE+AGVEVLL+NLGI +ESASFLISAFTTFLM
Sbjct: 516 RALIVGIGIQILQQFSGIGGILYYTPQILEEAGVEVLLANLGIGTESASFLISAFTTFLM 575
Query: 361 LPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420
LPCI V M+LMDV+GRR LLLTTIPVLI SL+IL+I E++ L V A +STACV+IYF
Sbjct: 576 LPCIAVGMRLMDVSGRRALLLTTIPVLIGSLVILIIGESIDL-GTVANAAVSTACVVIYF 634
Query: 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480
CCFV AYGPIPNILC+EIFPT+VRG+CIAICA+ YWI DIIVTYTLPVML+SIGL G F
Sbjct: 635 CCFVTAYGPIPNILCSEIFPTRVRGLCIAICALVYWIADIIVTYTLPVMLTSIGLEGIFI 694
Query: 481 VYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKAD 523
++AV+C ISWVFVFL+VPETKGMPLEVITEFFAVGARQA A
Sbjct: 695 IFAVMCAISWVFVFLKVPETKGMPLEVITEFFAVGARQADAAK 737
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061849|ref|XP_002300629.1| predicted protein [Populus trichocarpa] gi|222842355|gb|EEE79902.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/512 (81%), Positives = 461/512 (90%), Gaps = 1/512 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALL EGLGIGGETSIEEYIIGP DE+ADG+EP +KDKI+LYGPEEGLSWVAKPVTGQS
Sbjct: 216 MALLAEGLGIGGETSIEEYIIGPADEVADGQEPIVDKDKIKLYGPEEGLSWVAKPVTGQS 275
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKH 120
SLALVSRQGS+ NQ VPLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFSTAE H +
Sbjct: 276 SLALVSRQGSMVNQGVPLMDPLVTLFGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRT 335
Query: 121 DHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHS 180
+ WDEES+QREGE + S+ G DSDDNLHSPLISRQTTSMEKDMA P SHGS LSMRRHS
Sbjct: 336 EQWDEESVQREGEGYTSEAGGEDSDDNLHSPLISRQTTSMEKDMAHPTSHGSALSMRRHS 395
Query: 181 SLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSV 240
SL+QG+GEAV TGIGGGWQLAWKW+EREGEDGKKEGGFKRIYLHQEGVPGSRRGS+VS+
Sbjct: 396 SLLQGAGEAVDGTGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHQEGVPGSRRGSVVSL 455
Query: 241 PGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVK 300
PG DVP EGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPS+TA+K P WAALLE GVK
Sbjct: 456 PGGDVPVEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSQTATKAPIWAALLEPGVK 515
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
AL VG+GIQ+LQQF+GINGVLYYTPQILE AGV VLL+NLG+S+ SASFLISAFT LM
Sbjct: 516 HALFVGMGIQLLQQFAGINGVLYYTPQILEDAGVSVLLANLGLSTNSASFLISAFTNLLM 575
Query: 361 LPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420
LPCIGVAMKLMD++GRR LLLTTIPVLI+SL++L+I E L +S ++ A I TACVII+
Sbjct: 576 LPCIGVAMKLMDISGRRTLLLTTIPVLILSLVVLIIFE-LVTVSAIVSAAILTACVIIFI 634
Query: 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480
CCFV+AYGPIPNILC+EIFPT+VRG+CIAICAM YWI DIIVTYTLPVML+SIGL G F
Sbjct: 635 CCFVSAYGPIPNILCSEIFPTRVRGLCIAICAMVYWIGDIIVTYTLPVMLTSIGLVGIFS 694
Query: 481 VYAVVCFISWVFVFLRVPETKGMPLEVITEFF 512
+YA VC ISW+FVFL+VPETKGMPLEVITEFF
Sbjct: 695 IYAAVCVISWIFVFLKVPETKGMPLEVITEFF 726
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086094|ref|XP_002307812.1| predicted protein [Populus trichocarpa] gi|222857261|gb|EEE94808.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/519 (82%), Positives = 469/519 (90%), Gaps = 1/519 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALL EGLGIGGETSIEEYIIGP DELA+G+EPT +KDKI+LYGPEEGLSWVAKPVTGQS
Sbjct: 216 MALLAEGLGIGGETSIEEYIIGPADELANGQEPTVDKDKIKLYGPEEGLSWVAKPVTGQS 275
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKH 120
SLAL SR GS+ +Q VPLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFSTAE H +
Sbjct: 276 SLALASRHGSMVSQGVPLMDPLVTLFGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRT 335
Query: 121 DHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHS 180
+ WDEES+QREGE + S+ G DSDDNL SPLISRQTTSMEKDMA P SHGS+LSMRRHS
Sbjct: 336 EQWDEESVQREGEGYTSEAGGGDSDDNLQSPLISRQTTSMEKDMAHPTSHGSVLSMRRHS 395
Query: 181 SLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSV 240
SLMQG G+AV TGIGGGWQLAWKW+EREGEDGKKEGGFKRIYLHQ GVPGSRRGSLVS+
Sbjct: 396 SLMQGVGDAVDGTGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHQGGVPGSRRGSLVSL 455
Query: 241 PGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVK 300
PG DVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPS+TA+K P W ALLE GVK
Sbjct: 456 PGGDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSQTATKAPIWTALLEPGVK 515
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
AL VG+GIQ+LQQF+GINGVLYYTPQILE+AGV VLL+NLG+S+ SASFLISAFT FLM
Sbjct: 516 HALFVGIGIQLLQQFAGINGVLYYTPQILEKAGVSVLLANLGLSTTSASFLISAFTNFLM 575
Query: 361 LPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420
LPCIGVAM+LMD+AGRR LLLTTIPVLI+SLI+L+I E L +S V+ A I TACVII+
Sbjct: 576 LPCIGVAMRLMDIAGRRTLLLTTIPVLILSLIVLIIFE-LVTVSSVVNAAILTACVIIFI 634
Query: 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480
CCFV+AYGPIPNILC+EIFPT+VRG+CIAICAM YWI DIIVTYTLPVMLSSIGL G FG
Sbjct: 635 CCFVSAYGPIPNILCSEIFPTRVRGLCIAICAMVYWIGDIIVTYTLPVMLSSIGLVGIFG 694
Query: 481 VYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQA 519
+YAVVC ISW+FVFL+VPETKGMPLEVITEFFAVGA+QA
Sbjct: 695 IYAVVCAISWIFVFLKVPETKGMPLEVITEFFAVGAKQA 733
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508504|ref|XP_003522996.1| PREDICTED: monosaccharide-sensing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/528 (78%), Positives = 464/528 (87%), Gaps = 12/528 (2%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLGIGG+TSIEEYIIGP DE+ADG E EKDKIRLYG + GLSW+AKPVTGQS
Sbjct: 216 MALLVEGLGIGGDTSIEEYIIGPADEVADGHEHATEKDKIRLYGSQAGLSWLAKPVTGQS 275
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESG---SMRSTLFPTFGSMFSTAEHH 117
S+ L SR GS+ NQS+PLMDPLVTLFGS+HEKLPE+G SMRSTLFP FGSMFSTAE H
Sbjct: 276 SIGLASRHGSIINQSMPLMDPLVTLFGSIHEKLPETGAGGSMRSTLFPNFGSMFSTAEPH 335
Query: 118 VKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPP-SHGSIL-S 175
K++ WDEESLQREGED+ SD AG DSDDNLHSPLISRQTTS+EKD+ PP SHGSIL S
Sbjct: 336 AKNEQWDEESLQREGEDYMSDAAGGDSDDNLHSPLISRQTTSLEKDLPPPPPSHGSILGS 395
Query: 176 MRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRG 235
MRRHSSLMQGSGE GSTGIGGGWQLAWKWT++ GEDGK++GGFKRIYLH+EGV SRRG
Sbjct: 396 MRRHSSLMQGSGEQGGSTGIGGGWQLAWKWTDK-GEDGKQQGGFKRIYLHEEGVSASRRG 454
Query: 236 SLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALL 295
S+VS+PG EGE++QAAALVSQPALYSKEL+D HPVGPAMVHPSETASKGPSW ALL
Sbjct: 455 SIVSIPG-----EGEFVQAAALVSQPALYSKELIDGHPVGPAMVHPSETASKGPSWKALL 509
Query: 296 EAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAF 355
E GVK AL+VGVGIQILQQFSGINGVLYYTPQILE+AGVEVLLS++GI SESASFLISAF
Sbjct: 510 EPGVKHALVVGVGIQILQQFSGINGVLYYTPQILEEAGVEVLLSDIGIGSESASFLISAF 569
Query: 356 TTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTAC 415
TTFLMLPCIGVAMKLMDV+GRR+LLLTTIPVLI SLIILVI + V A IST C
Sbjct: 570 TTFLMLPCIGVAMKLMDVSGRRQLLLTTIPVLIGSLIILVIGSLVNF-GNVAHAAISTVC 628
Query: 416 VIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475
V++YFCCFV YGPIPNILC+EIFPT+VRG+CIAICA+ +WI DII+TY+LPVML S+GL
Sbjct: 629 VVVYFCCFVMGYGPIPNILCSEIFPTRVRGLCIAICALVFWIGDIIITYSLPVMLGSLGL 688
Query: 476 AGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKAD 523
G F +YAVVCFISW+FVFL+VPETKGMPLEVI+EFF+VGA+QA A
Sbjct: 689 GGVFAIYAVVCFISWIFVFLKVPETKGMPLEVISEFFSVGAKQAASAK 736
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457626|ref|XP_002274415.1| PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera] gi|63334145|gb|AAY40466.1| putative hexose transporter [Vitis vinifera] gi|310877832|gb|ADP37147.1| putative tonoplastic monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/524 (79%), Positives = 458/524 (87%), Gaps = 4/524 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTG-Q 59
MALLVEGLGIGGETSIEEYIIGP EL + ++P KD+I+LYGPE GLSWVAKPV G Q
Sbjct: 216 MALLVEGLGIGGETSIEEYIIGPTGELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQ 275
Query: 60 SSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVK 119
S+L+LVSRQGSLA Q++PLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFSTA+ +K
Sbjct: 276 STLSLVSRQGSLATQTLPLMDPLVTLFGSVHEKLPETGSMRSMLFPNFGSMFSTADPQIK 335
Query: 120 HDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRH 179
+ WDEESLQREGED+ASD G DSD +L SPLISRQT+SMEKDM PPSH SI+SMRRH
Sbjct: 336 TEQWDEESLQREGEDYASD-GGGDSDHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRH 394
Query: 180 SSLMQGSGEAVGSTGIGGG-WQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLV 238
SSLMQG+ GG WQLAWKW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLV
Sbjct: 395 SSLMQGTAGEAAGGMGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLV 454
Query: 239 SVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAG 298
S+PG DVP EG+YIQAAALVSQPALYSKELMDQ PVGPAMVHP+ETAS+GP WAALLE G
Sbjct: 455 SLPGGDVPAEGDYIQAAALVSQPALYSKELMDQDPVGPAMVHPAETASRGPMWAALLEPG 514
Query: 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358
VK AL VG GIQILQQFSGINGVLYYTPQILE+AGVEVLL +LG+ +ESASFLISAFTT
Sbjct: 515 VKHALFVGAGIQILQQFSGINGVLYYTPQILEEAGVEVLLESLGLGTESASFLISAFTTL 574
Query: 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVII 418
LMLPCI VAMKLMD+ GRR+LLLTTIPVLIV+L++LVI + L + V+ A ISTACVII
Sbjct: 575 LMLPCIVVAMKLMDIVGRRRLLLTTIPVLIVTLLVLVIGD-LVTTTTVIHAAISTACVII 633
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
YFCCFV AYGPIPNILC+EIFPT+VRG+CIAICA+ YWI DIIVTYTLPVML+SIGL G
Sbjct: 634 YFCCFVTAYGPIPNILCSEIFPTRVRGLCIAICALVYWIGDIIVTYTLPVMLTSIGLTGI 693
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
FG+YAVVC ISWVFVFL+VPETKGMPLEVI EFFAVGARQ T A
Sbjct: 694 FGIYAVVCVISWVFVFLKVPETKGMPLEVIAEFFAVGARQVTAA 737
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517193|ref|XP_003527273.1| PREDICTED: monosaccharide-sensing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/527 (78%), Positives = 464/527 (88%), Gaps = 11/527 (2%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLGIGG+TSIEEYIIGP D++ADG E EKDKIRLYG + GLSW+AKPVTGQS
Sbjct: 216 MALLVEGLGIGGDTSIEEYIIGPADKVADGHEHATEKDKIRLYGSQAGLSWLAKPVTGQS 275
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESG---SMRSTLFPTFGSMFSTAEHH 117
S+ L SR GS+ NQS+PLMDPLVTLFGS+HEKLPE+G SMRSTLFP FGSMFSTAE H
Sbjct: 276 SIGLASRHGSIINQSMPLMDPLVTLFGSIHEKLPETGAGGSMRSTLFPNFGSMFSTAEPH 335
Query: 118 VKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSIL-SM 176
VK++ WDEESLQREGED+ SD A DSDDNLHSPLISRQTTS+EKD+ PPSHGSIL SM
Sbjct: 336 VKNEQWDEESLQREGEDYMSDAADGDSDDNLHSPLISRQTTSLEKDLPPPPSHGSILGSM 395
Query: 177 RRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGS 236
RRHSSLMQGSGE GSTGIGGGWQLAWKWT+++ EDGK +GGFKRIYLH+EGV S RGS
Sbjct: 396 RRHSSLMQGSGEQGGSTGIGGGWQLAWKWTDKD-EDGKHQGGFKRIYLHEEGVSASHRGS 454
Query: 237 LVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLE 296
+VS+PG EGE++QAAALVSQPALYSKEL+D HPVGPAMVHPSETASKGPSW ALLE
Sbjct: 455 IVSIPG-----EGEFVQAAALVSQPALYSKELIDGHPVGPAMVHPSETASKGPSWKALLE 509
Query: 297 AGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFT 356
GVK AL+VGVGIQILQQFSGINGVLYYTPQILE+AGVEVLLS++GI SESASFLISAFT
Sbjct: 510 PGVKHALIVGVGIQILQQFSGINGVLYYTPQILEEAGVEVLLSDIGIGSESASFLISAFT 569
Query: 357 TFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACV 416
TFLMLPCIGVAMKLMDV+GRR+LLLTTIPVLIVSLIILVI + V A IST CV
Sbjct: 570 TFLMLPCIGVAMKLMDVSGRRQLLLTTIPVLIVSLIILVIGSLVNF-GNVAHAAISTVCV 628
Query: 417 IIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476
++YFCCFV YGPIPNILC+EIFPT+VRG+CIAICA+ +WI DII+TY+LPVMLSS+GL
Sbjct: 629 VVYFCCFVMGYGPIPNILCSEIFPTRVRGLCIAICALVFWIGDIIITYSLPVMLSSLGLG 688
Query: 477 GAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKAD 523
G F +YAVVCFISW+FVFL+VPETKGMPLEVI+EFF+VGA+QA A
Sbjct: 689 GVFAIYAVVCFISWIFVFLKVPETKGMPLEVISEFFSVGAKQAASAK 735
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147815142|emb|CAN59780.1| hypothetical protein VITISV_024656 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/524 (79%), Positives = 458/524 (87%), Gaps = 4/524 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTG-Q 59
MALLVEGLGIGGETSIEEYIIGP EL + ++P KD+I+LYGPE GLSWVAKPV G Q
Sbjct: 216 MALLVEGLGIGGETSIEEYIIGPTGELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQ 275
Query: 60 SSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVK 119
S+L+LVSRQGSLA Q++PLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFSTA+ +K
Sbjct: 276 STLSLVSRQGSLATQTLPLMDPLVTLFGSVHEKLPETGSMRSMLFPNFGSMFSTADPQIK 335
Query: 120 HDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRH 179
+ WDEESLQ+EGED+ASD G DSD +L SPLISRQT+SMEKDM PPSH SI+SMRRH
Sbjct: 336 TEQWDEESLQQEGEDYASD-GGGDSDHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRH 394
Query: 180 SSLMQGSGEAVGSTGIGGG-WQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLV 238
SSLMQG+ GG WQLAWKW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLV
Sbjct: 395 SSLMQGTAGEAAGGMGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLV 454
Query: 239 SVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAG 298
S+PG DVP EG+YIQAAALVSQPALYSKELMDQ PVGPAMVHP+ETAS+GP WAALLE G
Sbjct: 455 SLPGGDVPAEGDYIQAAALVSQPALYSKELMDQDPVGPAMVHPAETASRGPMWAALLEPG 514
Query: 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358
VK AL VG GIQILQQFSGINGVLYYTPQILE+AGVEVLL +LG+ +ESASFLISAFTT
Sbjct: 515 VKHALFVGAGIQILQQFSGINGVLYYTPQILEEAGVEVLLESLGLGTESASFLISAFTTL 574
Query: 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVII 418
LMLPCI VAMKLMD+ GRR+LLLTTIPVLIV+L++LVI + L + V+ A ISTACVII
Sbjct: 575 LMLPCIVVAMKLMDIVGRRRLLLTTIPVLIVTLLVLVIGD-LVTTTTVIHAAISTACVII 633
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
YFCCFV AYGPIPNILC+EIFPT+VRG+CIAICA+ YWI DIIVTYTLPVML+SIGL G
Sbjct: 634 YFCCFVTAYGPIPNILCSEIFPTRVRGLCIAICALVYWIGDIIVTYTLPVMLTSIGLTGI 693
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
FG+YAVVC ISWVFVFL+VPETKGMPLEVI EFFAVGARQ T A
Sbjct: 694 FGIYAVVCVISWVFVFLKVPETKGMPLEVIAEFFAVGARQVTAA 737
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|61613105|gb|AAX47312.1| hexose transporter 6 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/524 (78%), Positives = 455/524 (86%), Gaps = 4/524 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTG-Q 59
MALLVEGLGIGGETSIEEYIIGP EL + ++P KD+I+LYGPE GLSWVAKPV G Q
Sbjct: 216 MALLVEGLGIGGETSIEEYIIGPTGELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQ 275
Query: 60 SSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVK 119
S+L+LV RQGSLA Q++PLMDPLVTLFGSVHEK PE+GSMRS LFP FGSMFSTA+ +K
Sbjct: 276 STLSLVPRQGSLATQTLPLMDPLVTLFGSVHEKPPETGSMRSMLFPNFGSMFSTADPQIK 335
Query: 120 HDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRH 179
+ WDEESLQ+EGED+ASD G DSD +L SPLISRQT+SMEKDM PPSH SI+SMRRH
Sbjct: 336 TEQWDEESLQQEGEDYASD-GGGDSDHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRH 394
Query: 180 SSLMQGSGEAVGSTGIGGG-WQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLV 238
SSLMQG+ GG WQLAWKW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLV
Sbjct: 395 SSLMQGTAGEAAGGMGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLV 454
Query: 239 SVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAG 298
S+PG DVP EG+YIQAAALVSQPALYSKELMDQ PVGPAMVHP+ETAS+GP WAALLE G
Sbjct: 455 SLPGGDVPAEGDYIQAAALVSQPALYSKELMDQDPVGPAMVHPAETASRGPMWAALLEPG 514
Query: 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358
VK AL VG GIQILQQFSGINGVLYYTPQILE+AGVEVLL +LG+ +ESASFLISAFTT
Sbjct: 515 VKHALFVGAGIQILQQFSGINGVLYYTPQILEEAGVEVLLESLGLGTESASFLISAFTTL 574
Query: 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVII 418
LMLP I VAMKLMD+ GRR++LLTTIPVLIV+L++LVI + L + V+ A ISTACVII
Sbjct: 575 LMLPSIVVAMKLMDIVGRRRMLLTTIPVLIVTLLVLVIGD-LVTTTTVIHAAISTACVII 633
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
YFCCFV AYGPIPNILC+EIFPT+VRG+CIAICA+ YWI DIIVTYTLPVML+SIGL G
Sbjct: 634 YFCCFVTAYGPIPNILCSEIFPTRVRGLCIAICALVYWIGDIIVTYTLPVMLTSIGLTGI 693
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
FG+YAVVC ISWVFVFL+VPETKGMPLEVI EFFAVGARQ T A
Sbjct: 694 FGIYAVVCVISWVFVFLKVPETKGMPLEVIAEFFAVGARQVTAA 737
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453003|ref|XP_004144248.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] gi|449528279|ref|XP_004171132.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/521 (77%), Positives = 458/521 (87%), Gaps = 11/521 (2%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLGIGGETSIEEYIIGP +E+ DG+ D+KDKIRLYGP EGLSWVAKPVTGQS
Sbjct: 216 MALLVEGLGIGGETSIEEYIIGPAEEI-DGDI-ADQKDKIRLYGPGEGLSWVAKPVTGQS 273
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKH 120
SL L SRQGSL N+S+ LMDPLVTLFGSVHEKLPESGSM +FP FGSMFSTAE HVK+
Sbjct: 274 SLVLASRQGSLINRSM-LMDPLVTLFGSVHEKLPESGSM---IFPNFGSMFSTAEPHVKN 329
Query: 121 DHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHS 180
+ WDEES + G+D+AS+ G DSDDNLHSPLISRQTTSM+KD+ PPSHGSI S+RRHS
Sbjct: 330 EQWDEES--QRGDDYASEAGGMDSDDNLHSPLISRQTTSMDKDIVPPPSHGSIFSVRRHS 387
Query: 181 SLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSV 240
SLMQG+ E VG+TGIGGGWQLAWKW+E+ GEDGK EGGFKRIYLH E +PGSRRGS++S+
Sbjct: 388 SLMQGNIETVGNTGIGGGWQLAWKWSEK-GEDGK-EGGFKRIYLHPEDIPGSRRGSILSL 445
Query: 241 PGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVK 300
PG DV +GE IQAAALVSQPAL SKEL DQHPVGPAMVHPSET SK P W+ALLE GVK
Sbjct: 446 PGEDVHADGEVIQAAALVSQPALVSKELKDQHPVGPAMVHPSETVSKTPIWSALLEPGVK 505
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
AL+VG+GIQILQQFSGINGVLYYTPQILE+AGVEVLLSN+GI SESASFLISAFTTFLM
Sbjct: 506 HALIVGIGIQILQQFSGINGVLYYTPQILEEAGVEVLLSNMGIGSESASFLISAFTTFLM 565
Query: 361 LPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420
LPCIGVAM+LMDV+GRR LLL TIPVLIVSL+IL++ + L +S ++ A IST CV++YF
Sbjct: 566 LPCIGVAMRLMDVSGRRWLLLATIPVLIVSLLILIVFK-LVTVSTIVNAAISTICVVVYF 624
Query: 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480
C FV AYGPIPNILC+EIFPT+VRG+CIAIC+M +W DIIVTY+LPVMLS+IGLAG FG
Sbjct: 625 CVFVMAYGPIPNILCSEIFPTRVRGLCIAICSMVFWTGDIIVTYSLPVMLSAIGLAGVFG 684
Query: 481 VYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATK 521
+YA VC ISW+FV+L+VPETKGMPLEVI EFF+VGARQA K
Sbjct: 685 IYAFVCIISWIFVYLKVPETKGMPLEVIAEFFSVGARQAAK 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559173|ref|XP_002520608.1| sugar transporter, putative [Ricinus communis] gi|223540207|gb|EEF41781.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/523 (76%), Positives = 456/523 (87%), Gaps = 4/523 (0%)
Query: 1 MALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQS 60
MALLVEGLG+GGETSIEEYIIGP +E+ D ++ + +KD ++LYGPEEGLSWVAKPVTGQS
Sbjct: 218 MALLVEGLGVGGETSIEEYIIGPANEVVDDQDISVDKDHVKLYGPEEGLSWVAKPVTGQS 277
Query: 61 SLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKH 120
++ LVSR+GSLANQS+PLMDPLVTLFGSVHEKLPE+GSMRS LFP FGSMFS + ++
Sbjct: 278 TIGLVSRRGSLANQSMPLMDPLVTLFGSVHEKLPETGSMRSMLFPHFGSMFSVGGNQARN 337
Query: 121 DHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHS 180
+ WDEES REGED+ SD G DSDDNL SPLISRQTTSM+KD+ P +HGS+ SMR H
Sbjct: 338 EEWDEESQTREGEDYQSDAGGGDSDDNLESPLISRQTTSMDKDLV-PHAHGSLSSMR-HG 395
Query: 181 SLMQGS-GEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVS 239
SLMQG+ GE VGS GIGGGWQLAWKW+EREG+DGKKEGGFKRIYLHQEGVPGSRRGSLVS
Sbjct: 396 SLMQGNAGEPVGSAGIGGGWQLAWKWSEREGQDGKKEGGFKRIYLHQEGVPGSRRGSLVS 455
Query: 240 VPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGV 299
+ G D P EGE+IQAAALVSQPAL+SKEL++QHPVGPAM+HPSETA+KGPSW L E GV
Sbjct: 456 LHGGDAPAEGEFIQAAALVSQPALFSKELVNQHPVGPAMIHPSETAAKGPSWNDLFEPGV 515
Query: 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFL 359
K AL+VGVG+QILQQFSGINGVLYYTPQILEQAGV VLLS+LGISS SAS LISA TT L
Sbjct: 516 KHALVVGVGLQILQQFSGINGVLYYTPQILEQAGVGVLLSDLGISSASASLLISAITTLL 575
Query: 360 MLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIY 419
MLPCI VAM+LMD++GRR LLL TIPVLIVSL++LV+ + L S V+ A ISTA VI+Y
Sbjct: 576 MLPCIAVAMRLMDISGRRSLLLCTIPVLIVSLLVLVLGSAVNLGS-VINASISTASVIVY 634
Query: 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAF 479
FCCFV +GPIPNILCAEIFPT+VRG+CIAICA+ +WI DIIVTY+LPVML SIGLAG F
Sbjct: 635 FCCFVMGFGPIPNILCAEIFPTRVRGLCIAICALTFWIGDIIVTYSLPVMLKSIGLAGVF 694
Query: 480 GVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATKA 522
G+YAVVC IS VFV+L+VPETKGMPLEVITEFF+VGARQA A
Sbjct: 695 GLYAVVCIISLVFVYLKVPETKGMPLEVITEFFSVGARQAAAA 737
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| TAIR|locus:2030377 | 734 | TMT1 "tonoplast monosaccharide | 0.560 | 0.399 | 0.613 | 5.7e-91 | |
| UNIPROTKB|B4P624 | 856 | Tret1 "Facilitated trehalose t | 0.390 | 0.238 | 0.313 | 1.9e-19 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.390 | 0.238 | 0.313 | 3.3e-19 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.376 | 0.403 | 0.314 | 4.2e-19 | |
| UNIPROTKB|B4QBN3 | 488 | Tret1-2 "Facilitated trehalose | 0.376 | 0.403 | 0.314 | 4.2e-19 | |
| UNIPROTKB|B4HNS0 | 857 | Tret1-1 "Facilitated trehalose | 0.390 | 0.238 | 0.313 | 5.4e-19 | |
| UNIPROTKB|B4QBN2 | 857 | Tret1-1 "Facilitated trehalose | 0.447 | 0.273 | 0.294 | 5.4e-19 | |
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.376 | 0.403 | 0.309 | 5.5e-19 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.432 | 0.488 | 0.270 | 1.3e-18 | |
| TIGR_CMR|CPS_0245 | 478 | CPS_0245 "sugar transporter fa | 0.478 | 0.523 | 0.276 | 1.5e-18 |
| TAIR|locus:2030377 TMT1 "tonoplast monosaccharide transporter1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 186/303 (61%), Positives = 224/303 (73%)
Query: 221 RIYLHQEGVPGSRRGSLVSVPGYDVPEEG-EYIQAAALVSQPALYSKELMDQHPVGPAMV 279
R YL ++G SRRGS++S+PG P+ G YI A+ALVS+ L K + H G AMV
Sbjct: 436 RYYLKEDGAE-SRRGSIISIPGG--PDGGGSYIHASALVSRSVLGPKSV---H--GSAMV 487
Query: 280 HPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLS 339
P + A+ GP W+ALLE GVKRAL+VGVGIQILQQFSGINGVLYYTPQILE+AGV++LLS
Sbjct: 488 PPEKIAASGPLWSALLEPGVKRALVVGVGIQILQQFSGINGVLYYTPQILERAGVDILLS 547
Query: 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXX 399
+LG+SS SASFLIS TT LMLP I VAM+LMDV+GRR
Sbjct: 548 SLGLSSISASFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVLIVSLVVLVISEL 607
Query: 400 XQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459
IS V+ A +ST CV++YFC FV YGPIPNILC+EIFPT+VRG+CIAICAM +WI D
Sbjct: 608 IH-ISKVVNAALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCIAICAMVFWIGD 666
Query: 460 IIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQA 519
IIVTY+LPV+LSSIGL G F +YA VC ISW+FV+++VPETKGMPLEVIT++FA GA+
Sbjct: 667 IIVTYSLPVLLSSIGLVGVFSIYAAVCVISWIFVYMKVPETKGMPLEVITDYFAFGAQAQ 726
Query: 520 TKA 522
A
Sbjct: 727 ASA 729
|
|
| UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 68/217 (31%), Positives = 102/217 (47%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQFSGIN V++YT QI + AG + + I +F+
Sbjct: 627 LLKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDGNVCTIIVGVVNFV-- 684
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-I 411
TF IG+ L+D AGR+ + P V G +
Sbjct: 685 --ATF-----IGIL--LIDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWL 735
Query: 412 STACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
C ++Y F +GPIP ++ EI P K+RG ++ W C +VT T ++
Sbjct: 736 PLTCFVVYILGFSVGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVG 795
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
S+G GAF ++ +CF+ FV L VPET+G LE I
Sbjct: 796 SLGAHGAFWLFGAICFVGLFFVILYVPETQGKTLEDI 832
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 68/217 (31%), Positives = 100/217 (46%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQFSGIN V++YT QI + AG + NL +I
Sbjct: 628 LLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNL-------CTIIV 679
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-I 411
FL IG+ L+D AGR+ + P V G +
Sbjct: 680 GIVNFLAT-FIGIV--LIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWL 736
Query: 412 STACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
C +IY F +GPIP ++ EI P K+RG ++ W C +VT T +
Sbjct: 737 PLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTV 796
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
++G GAF ++ +CF+ FV + VPET+G LE I
Sbjct: 797 AMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDI 833
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 66/210 (31%), Positives = 100/210 (47%)
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
+ L + +G+ QQFSGIN V++YT QI + AG + SNL +++ F TF+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVG---IVNFFATFM- 321
Query: 361 LPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-ISTACVII 418
G+ L+D GR+ + P V G + +C +I
Sbjct: 322 ----GII--LIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLSCFVI 375
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
Y F +GPIP ++ EI P K+RG ++ W C +VT T + ++G GA
Sbjct: 376 YILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGA 435
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
F ++ VVC + FV + VPET+G LE I
Sbjct: 436 FWLFGVVCIVGLFFVIIYVPETRGKSLEEI 465
|
|
| UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 66/210 (31%), Positives = 99/210 (47%)
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
+ L + +G+ QQFSGIN V++YT QI + AG + SNL +++ F TF+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVG---IVNFFATFM- 321
Query: 361 LPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-ISTACVII 418
G+ L+D GR+ + P V G + C +I
Sbjct: 322 ----GIL--LIDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVI 375
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
Y F +GPIP ++ EI P K+RG ++ W C +VT T + ++G GA
Sbjct: 376 YILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGA 435
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
F ++ VVC + FV + VPET+G LE I
Sbjct: 436 FWLFGVVCIVGLFFVIICVPETRGKSLEEI 465
|
|
| UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 68/217 (31%), Positives = 100/217 (46%)
Query: 294 LLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS 353
LL+ + L + +G+ QQFSGIN V++YT QI + AG + NL +I
Sbjct: 628 LLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNL-------CTIIV 679
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-I 411
FL IG+ L+D AGR+ + P V G +
Sbjct: 680 GIVNFLAT-FIGIV--LIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWL 736
Query: 412 STACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
C +IY F +GPIP ++ EI P K+RG ++ W C +VT T +
Sbjct: 737 PLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTV 796
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
++G GAF ++ +CF+ FV + VPET+G LE I
Sbjct: 797 AMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDI 833
|
|
| UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 74/251 (29%), Positives = 113/251 (45%)
Query: 263 LYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVK---RALLVGVGIQILQQFSGIN 319
L KE D P ++ A + S +LE + + L + +G+ QQFSGIN
Sbjct: 595 LRGKEA-DVEPELKGLMRSQADADRQASRNTMLELFKRINLKPLSISLGLMFFQQFSGIN 653
Query: 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKX 379
V++YT QI + AG + SNL +++ F TF+ G+ L+D GR+
Sbjct: 654 AVIFYTVQIFKDAG-STIDSNLCTIIVG---IVNFFATFM-----GIL--LIDRLGRKIL 702
Query: 380 XXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-ISTACVIIYFCCFVAAYGPIPNILCAE 437
+ P V G + C +IY F +GPIP ++ E
Sbjct: 703 LYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGE 762
Query: 438 IFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRV 497
I P K+RG ++ W C +VT T + ++G GAF ++ +CF+ FV + V
Sbjct: 763 ILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVIIYV 822
Query: 498 PETKGMPLEVI 508
PET+G LE I
Sbjct: 823 PETQGKTLEDI 833
|
|
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 5.5e-19, P = 5.5e-19
Identities = 65/210 (30%), Positives = 99/210 (47%)
Query: 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLM 360
+ L + +G+ QQFSGIN V++YT QI + AG + SNL S +++ F TF+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNL---STIIVGVVNFFATFM- 321
Query: 361 LPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISP-VLKAG-ISTACVII 418
G+ L+D GR+ + P V G + C +I
Sbjct: 322 ----GII--LIDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVSHLGWLPLTCFVI 375
Query: 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478
Y F +GPIP ++ EI P K+RG ++ W C +VT T + ++G GA
Sbjct: 376 YILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGA 435
Query: 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
F ++ +C + FV + VPET+G LE I
Sbjct: 436 FWLFGAICIVGLFFVIIFVPETRGKSLEEI 465
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 64/237 (27%), Positives = 111/237 (46%)
Query: 279 VHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLL 338
+ S KG W L ++ L + +G+ + QQ +GIN VLYY P IL+ G +
Sbjct: 230 IRASLQQQKG-DWRTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQ--- 285
Query: 339 SNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXX 398
+S++A L++ I +++ L+D GRR
Sbjct: 286 -----ASQTAILATMGIGAVLVIITI-ISLPLIDSLGRRPLLFIGVGAMTVSLLVLSWSF 339
Query: 399 XXQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458
++ I+ ++++ F + GPI ++ +EIFP +VRG+ +I A W
Sbjct: 340 KVHGHMDYMR-WIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWAS 398
Query: 459 DIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVG 515
+ +VT T ++ +G +G F +Y ++ I+ +F++ VPETKG+ LE I E G
Sbjct: 399 NWLVTITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQIEENLYAG 455
|
|
| TIGR_CMR|CPS_0245 CPS_0245 "sugar transporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 76/275 (27%), Positives = 124/275 (45%)
Query: 245 VPEEGEYIQAAALVSQPALYSKEL---MDQHPVGPAMVHPSETASKGPSWAALLEAGVKR 301
+PE Y+ A + + K + ++ + V S K PS L G K+
Sbjct: 214 IPESPRYLVAQGKIEEARTIFKRIATGVENEQIEE--VKKSLHGDKKPSIRDLFIDGKKK 271
Query: 302 A---LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358
+ +G+G+ + QQF GIN V YY ++ + AG + S+S + A TT
Sbjct: 272 IHPIIWIGIGLSVFQQFVGINVVFYYGAELWQAAGFD--------ESQSLFINLIAGTTN 323
Query: 359 LMLPCIGVAMKLMDVAGRRKXXXXXXXXXXXXXXXXXXXXXXQLISPVLKAGIS----TA 414
++ I +A L+D GR+ + K +S T
Sbjct: 324 IISTFIAIA--LVDKIGRKPLLLVGSVGMFISLGALTFIFGTGGLDEAGKLALSDTTGTV 381
Query: 415 CVI---IYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471
+I ++ F ++GPI +L E+F ++RG +AI A A W+ + +T T P++L
Sbjct: 382 ALIMANLFVVFFGLSWGPIVWVLLGEMFNNRIRGAALAIAASAQWLANFAITMTFPILLG 441
Query: 472 SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLE 506
S GLAGA+G+Y V +S FV + ET+G+ LE
Sbjct: 442 SFGLAGAYGLYTVSALLSIFFVIKYIKETRGIRLE 476
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00020052 | SubName- Full=Putative uncharacterized protein; (738 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 523 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-39 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 5e-37 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-25 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-06 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-39
Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 298 GVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGV-EVLLSNLGISSESASFLISAFT 356
V++ LL+GV +QI QQ +GIN + YY+P I E G+ + LL + + +++
Sbjct: 249 TVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVG------VVNFVF 302
Query: 357 TFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACV 416
TF +A+ L+D GRR LLL + + ++L ++ L + ++ +
Sbjct: 303 TF-------IAIFLVDRFGRRPLLLLGAAGMAICFLVLGVA-LLGVAKSKGAGIVAIVFI 354
Query: 417 IIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476
+++ F +GP+P ++ +E+FP VR +AI A W+ + ++ + P++ +IG
Sbjct: 355 LLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-G 413
Query: 477 GAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFF 512
F V+A + + +FVF VPETKG LE I E F
Sbjct: 414 YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-37
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 283 ETASKGPSWAALLEAG--VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSN 340
E S PSW +L + ++R L +GV +Q QQF+GIN ++YY+P I E AGV +
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF 322
Query: 341 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETL 400
L S ++ A VA+ L+D GRR LLL + + L +L I
Sbjct: 323 LV------SIIVGAVNFAFTF----VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372
Query: 401 QLISPVLKAG-ISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459
+ +G ++ ++++ F +GP+P ++ +EIFP +R I+I A W+ +
Sbjct: 373 FVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432
Query: 460 IIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
IV + P ML SIG+ G F + + + +FV+ +PETKG LE I
Sbjct: 433 FIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLP 362
+++GV + + QQF GIN VLYY P+I + G S + L + + L
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA----------STDIALLQTIIVGVINLT 321
Query: 363 CIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCC 422
+A+ +D GR+ L + + + + L + Q ++ ++ Y
Sbjct: 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----PGIVALLSMLFYVAA 376
Query: 423 FVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG----- 477
F ++GP+ +L +EIFP +RG +AI A WI + V++T P+M + L
Sbjct: 377 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNG 436
Query: 478 -AFGVYAVVCFISWVFVFLRVPETKGMPLE 506
++ +Y + ++ +F++ VPETKG LE
Sbjct: 437 FSYWIYGCMGVLAALFMWKFVPETKGKTLE 466
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 18/195 (9%)
Query: 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLP 362
LL+ + + G G+L Y P L++ + S + + L+ + +
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQE---------VLGLSAAEAGLLLSLFGLGGIL 226
Query: 363 CIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCC 422
+ L D GRR+ +L++ L++ + L+ + + ++
Sbjct: 227 GALLGGLLSDRLGRRR------LLLLIGLLLAALG---LLLLALAPSLALLLVALLLLGF 277
Query: 423 FVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVY 482
+ P L +E+ P + RG + + + ++L + G G F +
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337
Query: 483 AVVCFISWVFVFLRV 497
A + ++ + + L
Sbjct: 338 AALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Query: 337 LLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396
L +LG+S+ A ++SAF+ +A L D GRR++LL + + + ++L
Sbjct: 25 LAEDLGLSASQAGLIVSAFS-LGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83
Query: 397 SETLQLISPVLKAGISTACVIIYFCC--FVAAYGPIPNILCAEIFPTKVRGICIAICAMA 454
+ +L L+ ++ F A P L AE FP K RG + + +
Sbjct: 84 ASSLWLL------------LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131
Query: 455 YWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498
+ + ++ ++ S+G F + A++ + + + +
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 334 VEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLII 393
L +LGIS L++AF+ +A +L D GRR++LL + + + L++
Sbjct: 20 PLYLAEDLGISPTEIGLLLTAFS-LGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLL 78
Query: 394 LVISETLQLISPVLKAGISTACVIIYFCC--FVAAYGPIPNILCAEIFPTKVRGICIAIC 451
L+ + +L L+ +++ A P L A+ FP + RG + +
Sbjct: 79 LLFASSLWLL------------LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLL 126
Query: 452 AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501
+ + + + ++ S G AF + A++ ++ V L +P
Sbjct: 127 SAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPP 176
|
Length = 346 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 33/194 (17%)
Query: 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 377
YY G+ + L NLG + +L + + LP + + L+D GRR
Sbjct: 338 TTAFSYY--------GLVLDLGNLGGNI----YLDLFISGLVELPAKLITLLLIDRLGRR 385
Query: 378 K-LLLTTIPVLIVSLIILVISETLQLISPVL----KAGISTACVIIYFCCFVAAYGPIPN 432
+ + + + L++L + L + L K GI++A F Y
Sbjct: 386 YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSA--------FQMVY----- 432
Query: 433 ILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVF 492
+ AE++PT VR + + +C+ + II + V L L ++ + ++ +
Sbjct: 433 LYTAELYPTVVRNLGVGVCSTMARVGSIISPFL--VYLGEKWLFLPLVLFGGLALLAGIL 490
Query: 493 VFLRVPETKGMPLE 506
+PETKG+PL
Sbjct: 491 TLF-LPETKGVPLP 503
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 24/150 (16%)
Query: 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASF--LISAFTT 357
++ L+G+G+ I +Y L LG+S+ SA ++S
Sbjct: 218 RKPFLLGLGLVIATT------TTFYLITTYLPT---YLTQTLGLSANSALLVLMLSLILF 268
Query: 358 FLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGIST--AC 415
F+ +P G L D GRR +L+ +L + L+ +L +G T
Sbjct: 269 FITIPLSG---ALSDRIGRRPVLII--------FTVLAALLAVPLLMALLDSGSFTLFFF 317
Query: 416 VIIYFCCFVAAYGPIPNILCAEIFPTKVRG 445
+++ Y E+FPT+VR
Sbjct: 318 LVLGMALIGGMYTGPMGSFLPELFPTEVRY 347
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 416 VIIY-FCCFVAAYGPIPN--ILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472
+ IY F A +GP I+ E+FPT+ R I A + II + +
Sbjct: 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454
Query: 473 ----------IGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVI 508
I + ++A+ F+ +F L +PETKG LE +
Sbjct: 455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.84 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.77 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.77 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.77 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.77 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.72 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.63 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.62 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.55 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.53 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.53 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.52 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.5 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.49 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.49 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.49 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.49 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.48 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.47 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.47 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.47 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.46 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.46 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.46 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.46 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.45 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.45 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.44 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.44 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.43 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.43 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.42 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.42 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.42 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.42 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.41 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.41 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.41 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.41 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.4 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.4 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.39 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.38 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.38 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.37 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.37 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.35 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.35 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.32 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.32 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.32 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.32 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.32 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.32 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.31 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.3 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.29 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.29 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.27 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.26 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.26 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.26 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.26 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.24 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.24 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.24 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.23 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.23 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.23 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.23 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.22 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.22 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.22 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.21 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.21 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.21 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.19 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.19 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.19 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.18 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.17 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.17 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.17 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.17 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.17 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.16 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.15 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.14 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.14 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.13 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.13 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.12 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.12 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.11 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.11 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.08 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.06 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.06 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.05 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.05 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.05 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.05 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.03 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.03 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.03 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.03 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.02 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.01 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.0 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.99 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.97 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.95 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.93 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.9 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.85 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.84 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.83 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.82 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.81 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.8 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.8 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.8 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.79 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.79 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.78 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.77 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.76 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.76 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.75 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.75 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.75 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.74 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.73 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.71 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.67 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.64 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.62 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.57 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.56 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.53 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.52 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.52 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.51 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.5 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.49 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.42 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.4 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.39 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.39 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.38 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.37 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.23 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.18 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.16 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.13 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.01 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.99 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.98 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.94 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.89 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.87 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.79 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.76 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.6 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.59 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.53 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.41 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.4 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.38 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.3 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.28 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.27 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.19 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.04 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 96.96 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.95 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.87 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.63 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.2 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.04 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 95.94 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.88 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.81 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.78 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.35 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.31 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.86 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.75 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.47 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.28 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 93.16 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 92.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.64 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.1 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 90.34 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 89.76 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.04 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.36 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 86.57 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 84.08 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.74 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 81.29 | |
| PF05297 | 381 | Herpes_LMP1: Herpesvirus latent membrane protein 1 | 80.86 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 80.6 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=226.64 Aligned_cols=261 Identities=25% Similarity=0.393 Sum_probs=211.9
Q ss_pred EEec-CCCcchHHHHhhhccCCCCCCCchhHHHhhhhhhhhhhhhhhhcCCCCCCCCCCCcccccCcccHHHHh-ccchh
Q 009862 223 YLHQ-EGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALL-EAGVK 300 (523)
Q Consensus 223 yL~~-~G~~~ear~~l~~l~g~~~~~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~ 300 (523)
||+. +|+.+||+++++.++|.++....... .....++. +....+..++.+++ ++.+|
T Consensus 210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~------------~~~e~~~~---------~~~~~~~~sl~~~~~~~~lR 268 (485)
T KOG0569|consen 210 YLLIKKGDEEEARKALKFYRGKEDVEAEIEE------------MLREIEEE---------ELEKKKQISLRQLLKNPTLR 268 (485)
T ss_pred hHHHHcCCHHHHHHHHHHHhCCCcchhHHHH------------HHHHHHHh---------ccccccCCcHHHHhcCcchh
Confidence 6777 89999999999999985432221100 00001110 01111333455555 45788
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+++++.+.++++++|.+.+.+|...++++.|+ +...+.+.+...++..++..+++.+++||+|||+++
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~----------~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl 338 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF----------TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL 338 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999999999999877 446778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
++++.++.++.+++.+.............+..+.+++++.+.++.|.+|++|.+.+|+||++.|+.+.++..++.|+..+
T Consensus 339 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~f 418 (485)
T KOG0569|consen 339 LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNF 418 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHH
Confidence 99999999888887766554411112333345677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHHhcc
Q 009862 461 IVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVG 515 (523)
Q Consensus 461 ig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~~~~ 515 (523)
+....++.+.+.+|- ..|+++.+.+++.+++.++++||||+|+..|+.+.++++
T Consensus 419 iv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 419 IVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999997 789999999999999999999999999999999998877
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=194.70 Aligned_cols=268 Identities=30% Similarity=0.562 Sum_probs=209.2
Q ss_pred eeEEEecCCCcchHHHHhhhccCCCCCCCchhHHHhhhhhhhhhhhhhhhcCCCCCCCCCCCcccccCcccHHHHhccch
Q 009862 220 KRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGV 299 (523)
Q Consensus 220 ~~iyL~~~G~~~ear~~l~~l~g~~~~~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 299 (523)
.+-||.++|+.+++++++.++++.+. .+.+....... .....+... ......+..++++..
T Consensus 232 sp~~L~~~g~~~~a~~~l~~l~g~~~-~~~~~~~~~~~--------~~~~~~~~~----------~~~~~~~~~l~~~~~ 292 (513)
T KOG0254|consen 232 SPRWLIEKGRLEEAKRSLKRLRGLSP-EDVEVELELLK--------IKLLVEAEV----------AEGKASWGELFSPKV 292 (513)
T ss_pred ChHHHHHcCChHHHHHHHHHHhCCCC-cchHHHHHHHH--------HHHHHhhhc----------ccccccHHHhcCcch
Confidence 35578889999999999999997441 11111111100 001111100 011114677777778
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++++++++.+..++|++|++.+.+|.+++++..|.. . .. ...+.+..+..+++.+++.++.||+|||++
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~---------~-~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLK---------S-DT-FLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCC---------C-ch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999987662 2 11 566677788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---chhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLI---SPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYW 456 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~ 456 (523)
++.+.+.+.+++++++........ ......+..+...+++..++..+.++++|.+.+|+||.+.|+++.+++....|
T Consensus 362 ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~ 441 (513)
T KOG0254|consen 362 LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW 441 (513)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence 999999999999988876655411 13344567777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH-HhheeccCCCCCCHHHHHHHHhcccc
Q 009862 457 ICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWV-FVFLRVPETKGMPLEVITEFFAVGAR 517 (523)
Q Consensus 457 lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v-~~~~~lpEtk~~~le~i~~~~~~~~~ 517 (523)
+...+....++.+....+....|.++..++.+..+ ++++++||||++++|++++.+..+..
T Consensus 442 ~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 442 LWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 99999988888888776655678888888888887 89999999999999999998877643
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=168.00 Aligned_cols=260 Identities=15% Similarity=0.178 Sum_probs=174.3
Q ss_pred EEecCCCcchHHHHhhhccCCCCCCCchhHHHhhhhhhhhhhhhhhhcCCC-CCCCCCCCcccccCcccHHHHhccchhh
Q 009862 223 YLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHP-VGPAMVHPSETASKGPSWAALLEAGVKR 301 (523)
Q Consensus 223 yL~~~G~~~ear~~l~~l~g~~~~~~~~~~~a~~l~~~~~l~~~~~l~E~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 301 (523)
|.+.+|++++|.+.+.++...|... ...+.+. .......+|.. .-...+.. ..++.......++.|..|+
T Consensus 256 f~~~~G~~~kAletL~kiArmNg~q----lplgvl~----~s~~~~~e~e~~~~~~~~~~-a~ke~rg~~~nLlsp~lrk 326 (528)
T KOG0253|consen 256 FYLAKGDDYKALETLHKIARMNGKQ----LPLGVLE----SSAIDRQEQEESDLDDSKSS-AAKEVRGGTTNLLSPKLRK 326 (528)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCC----CCcceee----eehhhhhhhhhhchhhhhhc-cccccccchHhhcChHHHH
Confidence 5566789999999999986444311 1111110 00111111111 10011111 1112233567899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcC---chh----hhhc----cCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAG---VEV----LLSN----LGISSESASFLISAFTTFLMLPCIGVAMKL 370 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G---~~~----~~~~----lgls~~~~~~l~~~i~~l~~lig~~l~g~L 370 (523)
..++.+.+++...+. ||+.......+++.-. ... ...+ -..+. ...+.-..+..+..++|.++.+++
T Consensus 327 ttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHH
Confidence 999999998888776 6666666666554421 000 0000 11122 234555667889999999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHH
Q 009862 371 MDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAI 450 (523)
Q Consensus 371 sDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi 450 (523)
+||+|||+.|..++++++++.+++..+..-. ...++.+..-+|..+...+.|+|..|+||+.+|+++.|.
T Consensus 405 verlGRKkTMal~l~~f~iflfll~~c~~rn----------~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGt 474 (528)
T KOG0253|consen 405 VERLGRKKTMALSLILFGIFLFLLTTCKTRN----------AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGT 474 (528)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHhcCcc----------hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhh
Confidence 9999999999999999999988887655433 223333333344445556678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q 009862 451 CAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 505 (523)
Q Consensus 451 ~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~l 505 (523)
|+...++|+++.|.+. +........+.+++.++++++++.+.++--|||+|.+
T Consensus 475 cSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 475 CSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 9999999999999998 5555555667888999999998888887779999864
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=186.22 Aligned_cols=145 Identities=16% Similarity=0.243 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccc
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYG 428 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 428 (523)
.++.+++..++.+++.+++++++||+|||++++++.++.+++++++.+..... .++++.++..++..+..
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~----------~ll~~~~l~g~~~~~~~ 666 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSES----------AMIALLCLFGGLSIAAW 666 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHH----------HHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999888888877766443222 12222223333333445
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q 009862 429 PIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 505 (523)
Q Consensus 429 ~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~l 505 (523)
++.+++++|++|++.|++++|+++++.++|++++|++++.+... +...+|++++++.++++++.+ ++|||+++.+
T Consensus 667 ~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 667 NALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 56668889999999999999999999999999999999988764 344566666666666555444 5699998754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-21 Score=208.11 Aligned_cols=255 Identities=33% Similarity=0.545 Sum_probs=186.6
Q ss_pred eEEEecCCCcchHHHHhhhccCCCCCCCchhHHHhhhhhhhhhhhhhhhcCCCCCCCCCCC-cccccCcccHHHHhccc-
Q 009862 221 RIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHP-SETASKGPSWAALLEAG- 298 (523)
Q Consensus 221 ~iyL~~~G~~~ear~~l~~l~g~~~~~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~-~~~~~~~~~~~~L~~~~- 298 (523)
+-||..+||.+||++++.++++.+...+ + ..+..++ ++..+.+..++.+++++
T Consensus 195 P~wL~~~~~~~~A~~~l~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (451)
T PF00083_consen 195 PRWLLSKGRDEEAEKVLRKLRGKEIEDE-E------------------------IEEIKAEKKESQESKASWRDLFRNKK 249 (451)
T ss_pred cceecccccccccccccccccccccccc-c------------------------ccccccccccccccceeeeecccccc
Confidence 6799999999999999999765321111 0 0000000 01111113566666653
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChH
Q 009862 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRK 378 (523)
Q Consensus 299 ~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ 378 (523)
+++++++.+.+.+++++++++.+.+|.|.++++.+. +. . ...+.+..+..+++.+++.+++||+|||+
T Consensus 250 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~---------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~ 317 (451)
T PF00083_consen 250 YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI---------SN-S--FLATLILGLVNFLGTLLAIFLIDRFGRRK 317 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc---------cc-c--ccccccccccccccccccccccccccccc
Confidence 577888888888888888888899999999888655 12 1 34455566777788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG 458 (523)
+++.+.++++++.+.+..................+.+..++..++..+++++.+.+++|+||++.|+++++++....+++
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~ 397 (451)
T PF00083_consen 318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG 397 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 99999888887777664111111011001122334444455567777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHH
Q 009862 459 DIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFF 512 (523)
Q Consensus 459 ~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~ 512 (523)
+++++.+.+.+.+..+....+.++++++++..+++++++||||+++++|++++|
T Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999999998888756788888999999999999999999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=178.70 Aligned_cols=213 Identities=21% Similarity=0.222 Sum_probs=136.7
Q ss_pred cHHHHhccc----hhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccC-CCch-hhHHHHHHHHHHHHHHH
Q 009862 290 SWAALLEAG----VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLG-ISSE-SASFLISAFTTFLMLPC 363 (523)
Q Consensus 290 ~~~~L~~~~----~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lg-ls~~-~~~~l~~~i~~l~~lig 363 (523)
.+++++++. +++.++..+...++.. ..+|++..|.|.++++.|.+....... .... ........+..++.+++
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 351 (502)
T TIGR00887 273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLD-IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPG 351 (502)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666422 2233333333333333 346778889999998866521000000 0000 01111233445567788
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch
Q 009862 364 IGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV 443 (523)
Q Consensus 364 ~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~ 443 (523)
.+++++++||+|||++++++.++++++++++.+..... . .. ..+...+++..+++.+..++.+.+.+|++|++.
T Consensus 352 ~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~ 425 (502)
T TIGR00887 352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--S--TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY 425 (502)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--c--hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence 89999999999999999888877777666555432110 0 00 112222223333455667778888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHH
Q 009862 444 RGICIAICAMAYWICDIIVTYTLPVMLSS----------IGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITE 510 (523)
Q Consensus 444 Rg~a~gi~~~~~~lG~iig~~l~~~l~~~----------~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~ 510 (523)
|+++.|++++++++++++++.+.|++.+. .++...++++++++++..++ ++++|||+++++||++.
T Consensus 426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 99999999999999999999999999874 34445677787777766554 46789999999988764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=167.70 Aligned_cols=196 Identities=27% Similarity=0.491 Sum_probs=148.0
Q ss_pred HHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 009862 308 GIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVL 387 (523)
Q Consensus 308 ~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~ 387 (523)
....++++.+++.+.+|.|.++++.|. +. ....+......+..+++.+++++++||+|||++++.+.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~p~i~~~~g~---------~~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~ 346 (479)
T PRK10077 277 MLSVFQQFVGINVVLYYAPEIFKTLGA---------ST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM 346 (479)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHcCC---------CC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHH
Confidence 334455566677778889999887554 33 34455566677888999999999999999999999998888
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009862 388 IVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLP 467 (523)
Q Consensus 388 ~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~ 467 (523)
+++.+++....... ......++.++++..++...+.++.+.+++|++|++.|++++|+++...+++.++++.++|
T Consensus 347 ~v~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 347 AIGMFSLGTAFYTQ-----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred HHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88777665432211 0111223334444444555566777888999999999999999999999999999988888
Q ss_pred HHH------HhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHHhccccc
Q 009862 468 VML------SSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQ 518 (523)
Q Consensus 468 ~l~------~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~~~~~~~ 518 (523)
.+. +..++...|+++++++++++++.+++.||||+++++++++.++++.|+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 478 (479)
T PRK10077 422 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETKK 478 (479)
T ss_pred HHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcccC
Confidence 665 467888888888888888888888889999999999999998777654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=169.99 Aligned_cols=314 Identities=18% Similarity=0.188 Sum_probs=207.5
Q ss_pred cccccCcceeeEeeecccCCCCcccCceeeEEEecCCCcchHHHHh-----hhcc-CCCCC-------CCchhH-HHhhh
Q 009862 192 STGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSL-----VSVP-GYDVP-------EEGEYI-QAAAL 257 (523)
Q Consensus 192 ~~gigg~w~l~~~~~~~~~~~~~~~~~~~~iyL~~~G~~~ear~~l-----~~l~-g~~~~-------~~~~~~-~a~~l 257 (523)
..||||.+++.-..++|.+. .+++|.+-......+|-.--+-+++ ..+. ..+.+ .-||.. -.+++
T Consensus 155 GiGIGGDYPlSAtI~SE~an-~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESAN-KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred hccccCCCcchHHHhhhhhh-hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 46999999998877766443 3455555555555554433322221 1111 11111 125654 56777
Q ss_pred hhhhhhhhhhhhcCCCCCCCCCCCc-----ccc-cCcc---------------------cHHHHhccchhhHHHHHHHHH
Q 009862 258 VSQPALYSKELMDQHPVGPAMVHPS-----ETA-SKGP---------------------SWAALLEAGVKRALLVGVGIQ 310 (523)
Q Consensus 258 ~~~~~l~~~~~l~E~~~~~~~~~~~-----~~~-~~~~---------------------~~~~L~~~~~~~~~li~~~l~ 310 (523)
..+..+|.|..++|++++.+...++ +.. ++.+ .+..++..++-+.++..+..+
T Consensus 234 pa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~W 313 (538)
T KOG0252|consen 234 PALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTW 313 (538)
T ss_pred HHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999998876322211 000 0000 133333333446666666666
Q ss_pred HHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 009862 311 ILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVS 390 (523)
Q Consensus 311 ~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~ 390 (523)
++... .+|....+...++...|+....++.. ..-..+.....+..+..+++..+..+++|++|||++.+.+++++++.
T Consensus 314 FllDi-afy~~nL~~s~I~~~ig~~~~~~~~~-~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~ 391 (538)
T KOG0252|consen 314 FLLDI-AFYGQNLFQSVIFSAIGVIPSANTYH-ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIF 391 (538)
T ss_pred Hhhhh-hhhccccHHHHHHHhhccCCCcchHH-HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHH
Confidence 66666 47888999999999876622111110 00012333444556677788889999999999999999999999988
Q ss_pred HHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 391 LIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML 470 (523)
Q Consensus 391 ~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~ 470 (523)
.+.++...+.. . .....+++..+..++...+......++.+|+||+++|+++.|++.+.+.+|++++...+.++.
T Consensus 392 ~~~~~~~y~~~-~----~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t 466 (538)
T KOG0252|consen 392 FFVIAGPYNQL-E----NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLT 466 (538)
T ss_pred HHHHcCCcccc-c----ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhh
Confidence 88776554321 1 111233344444555666777777788899999999999999999999999999999999999
Q ss_pred H-----hhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHHhc
Q 009862 471 S-----SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAV 514 (523)
Q Consensus 471 ~-----~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~~~ 514 (523)
+ ..+.+.++++++.++++..++.+ ++||||++++|++....+.
T Consensus 467 ~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 467 DHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEEES 514 (538)
T ss_pred hccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChhhc
Confidence 8 77888899888888877665554 4789999999998655443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-15 Score=159.56 Aligned_cols=240 Identities=20% Similarity=0.162 Sum_probs=139.9
Q ss_pred CCchhH-HHhhhhhhhhhhhhhhhcCCCCCCCCCCCc---cc----ccCcccHHHHhccchhhHHHHHHHHHHHHHhhhh
Q 009862 247 EEGEYI-QAAALVSQPALYSKELMDQHPVGPAMVHPS---ET----ASKGPSWAALLEAGVKRALLVGVGIQILQQFSGI 318 (523)
Q Consensus 247 ~~~~~~-~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~---~~----~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~ 318 (523)
..||.. ...++..+++++++..++|+|.+.+.+.+. ++ ..+...++.++++ +++.+++.+.+.++.. ..+
T Consensus 189 ~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 266 (490)
T PRK10642 189 WGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATK-HWRSLLTCIGLVIATN-VTY 266 (490)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHH-hHHHHHHHHHHHHHHH-HHH
Confidence 346643 333444555677788888887653211100 00 0112245566654 3455554444444333 357
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+..|+|.++++ .+|++. ....+......++.+++.+++|+++||+|||++++++.+++.++.+.+....
T Consensus 267 ~~~~~~~p~~l~~--------~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 337 (490)
T PRK10642 267 YMLLTYMPSYLSH--------NLHYSE-DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI 337 (490)
T ss_pred HHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999865 234444 3445556667788889999999999999999988877654443332221111
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-chh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG-LAG 477 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G-~~~ 477 (523)
. .. .....++..+++..+.+...+ ....+++|++|++.|++++++.+...++++.++|.+.+++.+..+ |+.
T Consensus 338 ~---~~---~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~ 410 (490)
T PRK10642 338 N---SN---VIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM 410 (490)
T ss_pred h---CC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 1 00 011112222222222222222 233556799999999999998777788888999999999887665 455
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCCCCH
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKGMPL 505 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~~~l 505 (523)
++++..++++++.+ ..+++||++++..
T Consensus 411 ~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 411 PAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 55555554444444 3445699866433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=153.12 Aligned_cols=196 Identities=35% Similarity=0.641 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+..++..++.++.++.+.+.+.+|.|.++++.|+ +. ....+...+..++.+++.+++++++||+|||+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 352 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV---------ST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLL 352 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCC---------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4555555555555565666778888998887554 34 4556667778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch--hhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISP--VLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG 458 (523)
++++++++++++++.+..... ... ....+..+....++.++++.+..++.++++.|.+|++.|++++++.++..++|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg 431 (481)
T TIGR00879 353 LIGAAGMAICLFVLGILGASF-VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLA 431 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHH
Confidence 888777777666554322111 110 00122334444555566666777888788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHH
Q 009862 459 DIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEV 507 (523)
Q Consensus 459 ~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~ 507 (523)
.++++.+.+.+.+..+|...|+++++++++.+++.+++.||+|++++++
T Consensus 432 ~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 432 NFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 9999999999999999999999999998888888888899999877653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=160.14 Aligned_cols=161 Identities=16% Similarity=0.040 Sum_probs=118.7
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
..+...+|.+..+++ ++. ....++.++..++.+++.+++|+++||+|||+++++++++.+++.++..+..
T Consensus 184 ~~is~ilp~i~~~~g---------ls~-~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~ 253 (742)
T TIGR01299 184 FVVGFVLPSAEKDLC---------IPD-SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253 (742)
T ss_pred HHHHHHHHHHHHHhC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556777766644 444 4556667788899999999999999999999999998888877777666544
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI----- 473 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~----- 473 (523)
++. .+++..++.+++..+..++..++++|++|.+.|++.+++..++..+|.++++.+...+...+
T Consensus 254 s~~----------~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~ 323 (742)
T TIGR01299 254 GYG----------FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323 (742)
T ss_pred hHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Confidence 433 34444455555555556777788999999999999999999999999999998877776543
Q ss_pred --------CchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 474 --------GLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 474 --------G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+|++.+++.++. ++..++.++++||+
T Consensus 324 ~g~~~~~~gWR~l~~i~~lp-~ll~ll~~~~lPES 357 (742)
T TIGR01299 324 MGSAYQFHSWRVFVIVCAFP-CVFAIGALTFMPES 357 (742)
T ss_pred cccccccccHHHHHHHHHHH-HHHHHHHHHHcCCC
Confidence 466666555444 44445556678998
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-14 Score=151.35 Aligned_cols=146 Identities=21% Similarity=0.305 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPI 430 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 430 (523)
....+..+..+++.++.++++||+|||++++++.++.+++++++.+..... .+..++ ..++..++.....++
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~ 430 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-------YFLRTA-LAVLGKFGITSAFQM 430 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-------hHHHHH-HHHHHHHHHHHHHHH
Confidence 444566778889999999999999999999998888777776655432211 111122 222222222333345
Q ss_pred cceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHH
Q 009862 431 PNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEV 507 (523)
Q Consensus 431 ~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~ 507 (523)
.+++.+|++|++.|++++|+++++.++|++++|.+.+ ....++..+++++++++++++++.+ ++|||+++++++
T Consensus 431 ~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 431 VYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 5678899999999999999999999999999999988 3445556677777777776666554 589999987653
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=143.76 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT 382 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~ 382 (523)
.++.+++.++.+......+.+..|.+.++ ++++. ....+..+++.++..++.++.|+++||+|||+++..
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~---------~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 78 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKD---------LGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG 78 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhh---------cCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence 33333333334343455666666766555 45555 566677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHH
Q 009862 383 TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIV 462 (523)
Q Consensus 383 ~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig 462 (523)
+.++.+++.++..+..+.. .+++..++.++...+..+....+++|++|++.|++++++.++...+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~----------~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 148 (412)
T TIGR02332 79 IMVLWGIASTATMFATGPE----------SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG 148 (412)
T ss_pred HHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877776654433 344445555555555556666677999999999999999999999999999
Q ss_pred HHHHHHHHH------hhCchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 463 TYTLPVMLS------SIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 463 ~~l~~~l~~------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
+.+.+++.+ ..||++.|.+.++..++..++.++++||++.
T Consensus 149 ~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 149 LILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999998874 3699999999888887777777777888764
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=141.88 Aligned_cols=235 Identities=15% Similarity=0.094 Sum_probs=131.4
Q ss_pred Cchh-HHHhhhhhhhhhhhhhhhcCCCCCCCCCCCc-ccccCcccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhch
Q 009862 248 EGEY-IQAAALVSQPALYSKELMDQHPVGPAMVHPS-ETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 325 (523)
Q Consensus 248 ~~~~-~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~-~~~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~ 325 (523)
.||. +....+...+.++++...+|++++.+.+.+. +...+.+..+.++++ ++.+...+...++..+ +++.+..|.
T Consensus 197 gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~ 273 (438)
T PRK09952 197 GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRH--PGAFLKIIALRLCELL-TMYIVTAFA 273 (438)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHc--hHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4653 2334444455667777888887643222111 111112223334433 2333333333333333 466778888
Q ss_pred HHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 009862 326 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISP 405 (523)
Q Consensus 326 p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~ 405 (523)
|.++++ .+|++.. .......+..+..+++.++.|+++||+|||++++++.++.+++.+.+.......
T Consensus 274 ~~y~~~--------~~g~s~~-~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---- 340 (438)
T PRK09952 274 LNYSTQ--------NLGLPRE-LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ---- 340 (438)
T ss_pred HHHHHH--------hcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 988865 3444442 233334455667788889999999999999998877665554443332211100
Q ss_pred hhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhC--chhHHHHH
Q 009862 406 VLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYW-ICDIIVTYTLPVMLSSIG--LAGAFGVY 482 (523)
Q Consensus 406 ~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~-lG~iig~~l~~~l~~~~G--~~~~f~i~ 482 (523)
... ..+++..++.++......+..+++++|.+|++.|+++.++.+...+ +++.++|.+.+++.+..+ |...+.+.
T Consensus 341 -~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~ 418 (438)
T PRK09952 341 -SIF-WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL 418 (438)
T ss_pred -ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 011 1111122222222222334455778999999999999999765544 899999999999988653 55555544
Q ss_pred HHHHHHHHHHhheeccCCC
Q 009862 483 AVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 483 ~i~~~i~~v~~~~~lpEtk 501 (523)
++++++.++. .+.++|++
T Consensus 419 ~~~~~i~~v~-~~~~~~~~ 436 (438)
T PRK09952 419 LAGCLISAMT-ALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHH-HHHccccc
Confidence 4444444444 44467654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=141.95 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.++...++.++..+...+.+..+.|.+.+++|. +. ....++.++..++..++.++.|+++||+|||+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~ 91 (434)
T PRK11663 22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGL---------SR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM 91 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC---------CH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence 3444444444444443345667788988887554 34 5666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
.++.++.+++.+++.+..++. .+++..++.++..+...+....+++|.+|++.|++++++.+....+|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 161 (434)
T PRK11663 92 GIGLIATGIINILFGFSSSLW----------AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA 161 (434)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999888888877666544333 2222233333333333445556779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 461 IVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 461 ig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+++.+.+.+.+.+||++.|.+.++++++..++..+++||+
T Consensus 162 ~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 162 LIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999888877766655555556654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-13 Score=138.68 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=125.0
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+......|.+.+++| ++. ....+......++..++.++.|+++||+|||++++.+.++.+++.+.+.+..
T Consensus 26 ~~~~~~~~~l~~~~~---------~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 95 (390)
T PRK03545 26 FVPVGLLSDIAQSFH---------MQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW 95 (390)
T ss_pred HHHHcchHHHHhHcC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445677777644 444 5666677788888889999999999999999999999888888877776655
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
++. .+++..+..++......+....++.+++|.+.|++++|+......+|..+++.+.+.+.+.+||++.
T Consensus 96 ~~~----------~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~ 165 (390)
T PRK03545 96 NFT----------VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT 165 (390)
T ss_pred cHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence 443 3333334444444444455556778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhheeccCCC
Q 009862 479 FGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
|++.++++++..++.++.+|+.+
T Consensus 166 f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 166 FLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998888777666666667643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-13 Score=136.87 Aligned_cols=168 Identities=17% Similarity=0.156 Sum_probs=128.5
Q ss_pred hhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 009862 316 SGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV 395 (523)
Q Consensus 316 ~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~ 395 (523)
.+........|.+.+++|. +. ....+..++..++.+++.++.|+++||+|||+.++++.++.+++.+.+.
T Consensus 19 ~~~~~~~~~~p~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLST---------PA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHhcccHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3455666677887777544 44 5667777788899999999999999999999999998888877777665
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
...+.. .+++..++.++......+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..+|
T Consensus 89 ~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 158 (385)
T TIGR00710 89 LSNNIE----------TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW 158 (385)
T ss_pred HHccHH----------HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 543332 2333333333333444455557779999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 476 AGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
+..+++.++++++..++.+++.||++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 159 HAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999888888777777777667776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-13 Score=138.43 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=124.7
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
.....+|.+.+++| ++. ....+..++..++..++.++.|+++||+|||++++.+.++.+++.++..+..+
T Consensus 38 ~~~~~l~~~~~~~g---------~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 107 (394)
T PRK10213 38 LPVSLLTPMAQDLG---------ISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS 107 (394)
T ss_pred HHHhhHHHHHHHcC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh
Confidence 44445677776654 444 55566667788889999999999999999999999999998887777665444
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHH
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAF 479 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f 479 (523)
+. .+++..++.++......+....++.|++|++.|+.+.++......+|.++++.+.+.+.+.+||++.|
T Consensus 108 ~~----------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 108 FS----------LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred HH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 33 34444444444444455666677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeccCCC
Q 009862 480 GVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 480 ~i~~i~~~i~~v~~~~~lpEtk 501 (523)
++.+++++++.++....+||++
T Consensus 178 ~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 178 NAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 8888777666555555567754
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=137.91 Aligned_cols=266 Identities=15% Similarity=0.181 Sum_probs=168.6
Q ss_pred ccCceeeEEEecCCCcchHHHHhh--hccCCCCCCCchhHHHhhhhhhhhhhhhhhhcCCCCCCCC------C----C--
Q 009862 215 KEGGFKRIYLHQEGVPGSRRGSLV--SVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAM------V----H-- 280 (523)
Q Consensus 215 ~~~~~~~iyL~~~G~~~ear~~l~--~l~g~~~~~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~------~----~-- 280 (523)
.+|.+-.+|=.+++.-......+. ............++..+++..+++++.....+++|+.... + +
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~ 229 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY 229 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh
Confidence 367788888888854444444444 2221111344567888888888888887777777653210 0 0
Q ss_pred CcccccC-cccHHHHhccchhhHHHH-HHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHH
Q 009862 281 PSETASK-GPSWAALLEAGVKRALLV-GVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF 358 (523)
Q Consensus 281 ~~~~~~~-~~~~~~L~~~~~~~~~li-~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l 358 (523)
+++++.. .+.|+.+++.-.+.+.++ .++..++... .-+++..|.|.|+.+ ..|++. ..+.+..+++-.
T Consensus 230 ~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi-vR~gi~dW~p~YL~e--------~k~~s~-~~a~~a~~lfE~ 299 (448)
T COG2271 230 EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV-VRYGINDWGPLYLSE--------VKGFSL-VKANWAISLFEV 299 (448)
T ss_pred hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHhhhHHHHHHH--------hcCCCH-HHHHHHHHHHHH
Confidence 1111111 233554444333333333 3444444444 478999999999988 355555 566677779999
Q ss_pred HHHHHHHHHHHHHHhh--CChHHHHHHHHHH-HHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceee
Q 009862 359 LMLPCIGVAMKLMDVA--GRRKLLLTTIPVL-IVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILC 435 (523)
Q Consensus 359 ~~lig~~l~g~LsDr~--GRR~lll~~~~l~-~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~ 435 (523)
++++|.+++||++||+ |||..+.+.+.+. .++++.+... +..+ .....+++...+++..+..-+....+
T Consensus 300 agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------~~~~-~~l~~~~l~~iGf~IyGPqmLiGl~a 371 (448)
T COG2271 300 AGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------PNGS-YLLDAILLFIIGFLIYGPQMLIGLAA 371 (448)
T ss_pred HhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------CCcc-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999995 7776654433333 3333222211 1111 12233333333444444444445567
Q ss_pred ecccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 436 AEIFPTKVRGICIAICAMAYWI-CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 436 aElfP~~~Rg~a~gi~~~~~~l-G~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
.|+.|.+.-|++.|+...+..+ |+..+....+++.+.+||.+.|.++.+.++++.++......
T Consensus 372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998 99999999999989999999999888888877766655443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=139.47 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=126.1
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
......++.|.+.+++|. +. ....++..+..++.+++.++.|+++||+|||++++.+.++.+++.+++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 101 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGL---------DP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL 101 (398)
T ss_pred HHHHHHhhHHHHhhccCC---------CH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888777544 33 45566677888899999999999999999999999988877777666654
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.. .+++..++.++......+....++.|.+|.+.|++++++......+|.++++.+.+.+.+..+|+
T Consensus 102 ~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 102 ATNVT----------QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred ccchH----------HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 33322 23333334444444455666678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
..+++.++++++..++.++++||+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCC
Confidence 9888887777766666666678764
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=137.27 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT 382 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~ 382 (523)
++.+.++..+++..+.+.....+|.+.++.|. +. ....+..++..++.+++.++.|+++||+|||+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~---------s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 73 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNA---------SE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIP 73 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHH
Confidence 44445555555555667777888998887554 33 556667778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHH
Q 009862 383 TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIV 462 (523)
Q Consensus 383 ~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig 462 (523)
+.++.+++.+++....+.. .+++..++.++......+..+.++.|.+|++.|+++.++.+....++.+++
T Consensus 74 ~~~~~~i~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~ 143 (392)
T PRK10473 74 GAALFIIASLLCSLAETSS----------LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLA 143 (392)
T ss_pred HHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776665433322 222223333333333344555677999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 463 TYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 463 ~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
|.+.+.+.+..+|++.+++.++++++..++.++++||++.
T Consensus 144 ~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 144 PVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999888888899999999888888777777777787654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=138.02 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=122.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
......-+|.+.++ ++.+. ....+..+++.++..++.++.|+++||+|||++++.+.++.+++.+++.+.
T Consensus 32 ~~~~~p~l~~i~~~---------~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 32 TDLIQPGIINVVRD---------FNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHhhccCHHHHHHH---------hCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 33444445555555 44444 455666778889999999999999999999999999988888777766654
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.++. .+++..++.++......++.++++.|.+|++.|++++++.+....++.++++.+.+.+.+..||++
T Consensus 102 ~~~~----------~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~ 171 (413)
T PRK15403 102 TSMT----------QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKV 171 (413)
T ss_pred CCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4333 233333333333333344455667899999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.|++.+++.++..++.++.+||++.
T Consensus 172 ~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 172 LFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9998888877776666666888753
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=137.63 Aligned_cols=167 Identities=10% Similarity=0.097 Sum_probs=121.8
Q ss_pred hhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL 394 (523)
Q Consensus 315 ~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l 394 (523)
..+.+.+..++|.++++ ++|++. ....+..++..+..+++.++.|+++||+|||++++++.++.+++.+.+
T Consensus 20 ~~g~~~~~~~l~~~l~~--------~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 20 TIGRGATLPFMTIYLSR--------QYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 34567778888888865 355555 566666777788889999999999999999999998888777766665
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
.+..++. ..++ .....++......++...+.+|.+|++.|++++++.+...++|.+++|.+.+.+.. .+
T Consensus 91 ~~~~~~~---------~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g 159 (395)
T PRK10054 91 PLVNNVT---------LVVL-FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS 159 (395)
T ss_pred HHHhHHH---------HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 5444332 1222 22222222233445556777899999999999999999999999999999998875 78
Q ss_pred chhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 475 LAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
|+..|.+.++++++..++..+++|+++
T Consensus 160 ~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 160 INLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 998888877777766555555566553
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=133.57 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=145.0
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
-+...-.+|.+.+++++ +...+.+..+++.++..++.++...+.+|+.||++++..+.+++++.++.++.
T Consensus 29 Efv~~gLLp~iA~dl~v----------s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA 98 (394)
T COG2814 29 EFVPVGLLPPIAADLGV----------SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA 98 (394)
T ss_pred HHHHHhchHHHHHHcCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788999988666 33677777889999999999999999999999999999999999999999998
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
+++. .+++..+..+.....+.++..++++++.|+++|++++++..+...++.+++..++.++-+.+|||.
T Consensus 99 p~f~----------~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 99 PSFA----------VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred ccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 8887 667777777777777788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 009862 478 AFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lp 498 (523)
+|++.+++.+++.+..+..+|
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998899
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=135.93 Aligned_cols=231 Identities=19% Similarity=0.192 Sum_probs=122.0
Q ss_pred Cchh-HHHhhhhhhhhhhhhhhhcCCCCCCCCCCCcccccCcccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchH
Q 009862 248 EGEY-IQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTP 326 (523)
Q Consensus 248 ~~~~-~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p 326 (523)
.||. +...++..++.++++..++|++.+++.. . .....++.++++ ++..+.... .++.....++.+..|+|
T Consensus 196 gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~----~-~~~~~~~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~lp 267 (432)
T PRK10406 196 GWRIPFALGAVLAVVALWLRRQLDETSQQETRA----L-KEAGSLKGLWRN--RRAFIMVLG-FTAAGSLCFYTFTTYMQ 267 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----h-cccccHHHHHhh--HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4664 2344445555666777778776532111 0 112245666653 232222222 22222334677888999
Q ss_pred HHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 009862 327 QILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPV 406 (523)
Q Consensus 327 ~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~ 406 (523)
.++.+ .+|++. ........+..++..++.++.|+++||+|||++++++.++.+++.+.+...... ..
T Consensus 268 ~~l~~--------~~g~s~-~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~- 334 (432)
T PRK10406 268 KYLVN--------TAGMHA-NVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN---VS- 334 (432)
T ss_pred HHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc---CC-
Confidence 99875 244444 344444555566667788889999999999998776655443333222211110 00
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 009862 407 LKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI-CDIIVTYTLPVMLSSIGLAGAFGVYAVV 485 (523)
Q Consensus 407 ~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l-G~iig~~l~~~l~~~~G~~~~f~i~~i~ 485 (523)
.....+.++ +...+......+..+.+++|+||++.|++++|+++..+++ .+...|.+.+.+ +..|+....+++.++
T Consensus 335 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~ 411 (432)
T PRK10406 335 -SPYAAFGLV-MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTL 411 (432)
T ss_pred -cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHH
Confidence 011111111 1111111122234456679999999999999999887765 344566766644 555644444444433
Q ss_pred HHHHHHHhheeccCCCCC
Q 009862 486 CFISWVFVFLRVPETKGM 503 (523)
Q Consensus 486 ~~i~~v~~~~~lpEtk~~ 503 (523)
+.+++++..++ .++++|
T Consensus 412 ~~~i~~~~~~~-l~~~~~ 428 (432)
T PRK10406 412 MAVVAFLVSLM-LHRKGK 428 (432)
T ss_pred HHHHHHHHHHH-hhhccc
Confidence 33333333333 334444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=144.53 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=131.9
Q ss_pred HhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 009862 314 QFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLII 393 (523)
Q Consensus 314 ~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~ 393 (523)
............|.+.+++|. +. ....+....+.++.+++.++.|+++||+|||++++++.++.+++.++
T Consensus 14 ~~~~~~~~~~~~p~~~~~~g~---------s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 14 AVLDSTIVNVAIPTIAGDLGS---------SL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---------Ch-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333456677788988887554 33 45667777889999999999999999999999999998888887776
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+....++. .+++..++.++......+....++.|.+|++.|++++++..+...+|..+++.+.+.+.+..
T Consensus 84 ~~~~~~~~----------~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 153 (485)
T TIGR00711 84 CGVAPNLE----------LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY 153 (485)
T ss_pred HhCcCCHH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence 65443332 34444444455555555666678899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
+|++.|++.+.++++..++..+++|+++.
T Consensus 154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 154 HWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred CceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 99999998887777777666666776543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=138.11 Aligned_cols=174 Identities=12% Similarity=0.021 Sum_probs=126.5
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+..+.|.++++ .+|++. ....++..+..++.+++.++.+++.||.++++.+..+.++.+++.+.+.+..
T Consensus 240 ~~~~~~~p~~~~~--------~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T PRK10489 240 SAVRVLYPALADE--------VWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP 310 (417)
T ss_pred HhHHHhhHHHHHh--------ccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc
Confidence 3456678888876 234444 4455566677888999999999999998877777777666655554443222
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
+. +...++. ++.++......+...+++.|.+|++.|++++|++++...+|..+++.+.|.+.+..|....
T Consensus 311 ~~---------~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~ 380 (417)
T PRK10489 311 MW---------ILAVLCL-ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVAS 380 (417)
T ss_pred hH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhH
Confidence 11 1112222 2222222233344456778999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhheeccCCCCCCHHHHHHH
Q 009862 479 FGVYAVVCFISWVFVFLRVPETKGMPLEVITEF 511 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~ 511 (523)
+.+++++.++.+++.++.+|++|+++++++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 381 ASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 888888888888888888899999998887654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-13 Score=142.56 Aligned_cols=178 Identities=13% Similarity=0.059 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Q 009862 304 LVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTT 383 (523)
Q Consensus 304 li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~ 383 (523)
+..+++..+....-...+..-+|.+..+++. +. ....+....+.++...+.++.|+++||+|||++++++
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~---------s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGA---------SG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3333333333344456677778999887554 33 5566777788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHH
Q 009862 384 IPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIV 462 (523)
Q Consensus 384 ~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig 462 (523)
.++.+++.+++.+..+.. .+++..++.++...+..+.....+.+.+ |++.|++++|+......+|..++
T Consensus 78 ~~~~~~~~~~~~~a~~~~----------~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~g 147 (495)
T PRK14995 78 GTLFGLASLAAAFSPTAS----------WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFG 147 (495)
T ss_pred HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777655443 3344444444444444444334444555 77999999999999999999999
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 463 TYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 463 ~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
|.+.+.+.+..+|++.|++...++++..++.++++|+.+
T Consensus 148 p~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 148 PLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999888887777777777777754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=136.16 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=106.2
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
..+.+..|.|.++++.|. +. ...........++.+++.++.|+++||+|||+.+..+.+..+++++.+..
T Consensus 235 ~~~~~~~~~p~~~~~~g~---------s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGL---------SR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHhCCC---------Ch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788999877544 33 44555666778889999999999999999999988766655555444332
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
.... + .+.+..++.+++..+..+....++.|.+|++.|+++.|+.+....+|.+++|.+.+.+.+..+..
T Consensus 305 ~~~~---------~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~ 374 (406)
T PRK11551 305 APSF---------A-GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST 374 (406)
T ss_pred cCcH---------H-HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch
Confidence 2111 1 12222222333333444555677799999999999999999999999999999999998876544
Q ss_pred hH-HHHHHHHHHHHHHHhh
Q 009862 477 GA-FGVYAVVCFISWVFVF 494 (523)
Q Consensus 477 ~~-f~i~~i~~~i~~v~~~ 494 (523)
.. +++...+.++..++.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 375 VGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 33 3333333333333333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-12 Score=136.39 Aligned_cols=179 Identities=12% Similarity=0.020 Sum_probs=120.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 009862 298 GVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 377 (523)
Q Consensus 298 ~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR 377 (523)
++++.+...+...++. +...+.+..+.|.+.+++| ++. ....++.+...++.+++.++.|+++||+|||
T Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g---------ls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r 101 (476)
T PLN00028 33 PHMRAFHLSWISFFTC-FVSTFAAAPLLPIIRDNLN---------LTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPR 101 (476)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 3445555554443333 3345566667777777654 444 4455566677888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 378 KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 378 ~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
+++.++.++.+++.++..+..+.. .+++..++.+++.....+. ..+++|.+|++.|++++++.+....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~----------~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~ 170 (476)
T PLN00028 102 YGSAFLLMLTAPAVFCMSLVSSAT----------GFIAVRFFIGFSLATFVSC-QYWMSTMFNGKIVGTANGIAAGWGNL 170 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHhhHHH-HHHHHHhcChhheeHHHHHHHHHHHH
Confidence 999888877777766655443322 2222223333333333333 34568999999999999999988888
Q ss_pred HHHHHHHHHHHHHHh---------hCchhHHHHHHHHHHHHHHHhheecc
Q 009862 458 CDIIVTYTLPVMLSS---------IGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 458 G~iig~~l~~~l~~~---------~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
|..+++.+.+.+... .||++.|++.++++++..++.+++.+
T Consensus 171 g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 171 GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888877766431 48999999888888777666655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=135.16 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=128.3
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+....|.+.+++| ++. ....++..+..++.+++.++.|+++||+|||++++++.++.+++.+++.+.
T Consensus 10 ~~~~~~~~~~~~~~~g---------~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 79 (399)
T TIGR00893 10 RANLSFAAPMLQEDLG---------LSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA 79 (399)
T ss_pred HHhhhHhHHHHHHhhC---------CCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence 3455666777766644 444 566677778899999999999999999999999999888887777766654
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+.. .+++..++.++......+....++.|.+|++.|++++++......+|.++++.+.+.+.+..+|++
T Consensus 80 ~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 149 (399)
T TIGR00893 80 GAYV----------SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149 (399)
T ss_pred cCHH----------HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchH
Confidence 4333 333444444444455566666788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.|.+.++++++..++.++..||++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 150 AFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHHHHHHhhheecCCCC
Confidence 9998888887777777666776544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=133.21 Aligned_cols=179 Identities=10% Similarity=0.045 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+...++..+.. ....+.+....|.+.+++| ++. ....++.++..++.+++.++.|+++||+|||+++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~---------~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~ 80 (405)
T TIGR00891 12 NAFSAAWLGWLLD-AFDFFLVALVLAEVAGEFG---------LTT-VDAASLISAALISRWFGALMFGLWGDRYGRRLPM 80 (405)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC---------CCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3333333333333 3345666777777776654 444 4566677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
+++.++.+++.+++.+..++. .+++..++.++......+....++.|.+|++.|+++.++.++...+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~ 150 (405)
T TIGR00891 81 VTSIVLFSAGTLACGFAPGYI----------TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV 150 (405)
T ss_pred HHHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH
Confidence 998888877777665544333 3333344444444444555557779999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 461 IVTYTLPVMLSSIG--LAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 461 ig~~l~~~l~~~~G--~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+++.+.+.+.+..+ |++.|.+.++..++ .++..+.+||++
T Consensus 151 ~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~ 192 (405)
T TIGR00891 151 VAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 99999999888776 88887765444333 344445567764
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=137.61 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+++.++..++. ....+.+..+.|.+.+++|. +. ....+......++..++.+++|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~g~---------s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 78 (471)
T PRK10504 10 WQLWIVAFGFFMQ-SLDTTIVNTALPSMAQSLGE---------SP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF 78 (471)
T ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhCc---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3444444444443 33466778889999987655 33 4555566777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
+.+.++.+++.+++.+..+.. .+++..++.++......+....++.|.+|++.|++++++.+....+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (471)
T PRK10504 79 FTAIVLFTLGSLFCALSGTLN----------ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPL 148 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 988777777666554432222 2333344444444445556667778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 461 IVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 461 ig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+++.+.+.+.+..+|++.|.+...++.+..++.....|+.
T Consensus 149 ~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 149 LGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred hhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999888777776666666655654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=133.18 Aligned_cols=183 Identities=11% Similarity=0.069 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChH
Q 009862 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRK 378 (523)
Q Consensus 299 ~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ 378 (523)
.+|.+++..++..+..+. .+......|.+.++++. +. ....+...+..++..++.+++|+++||+|||+
T Consensus 6 ~~~~l~~~~~~~~~~~~~-~~~~~p~~~~i~~~~~~---------s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~ 74 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMA-QTIYVPAIADMARDLNV---------RE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP 74 (394)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH
Confidence 345555555555444432 34455567777776544 44 56667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG 458 (523)
.++++.++.+++.+......++. .+++..++.++......+....+..|.++.+.|+.+.++.++...++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (394)
T PRK11652 75 VILVGMSIFILGTLVALFAHSLT----------VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVS 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHH----------HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99988887777766655433222 23333333333333333444456678899899999999999999999
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 459 DIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 459 ~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
..++|.+.+.+.+..||++.|++.+++.++..++..++.||++.
T Consensus 145 ~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 145 PLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999999999988999999988887777666666666787643
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=135.88 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT 382 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~ 382 (523)
++..++..++.+. .++++..|+|.|+++ .+|++. ..+.+...+..++.+++.+++|+++||+|||+.++.
T Consensus 260 ~~~~~~~~~~~~~-~~~~~~~~~p~yl~~--------~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~ 329 (467)
T PRK09556 260 IWLLCFANIFLYI-VRIGIDNWSPVYAFQ--------ELGFSK-EDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA 329 (467)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------ccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 3444444444333 456788899999876 345555 455566667788899999999999999999987765
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-HHHH
Q 009862 383 TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI-CDII 461 (523)
Q Consensus 383 ~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l-G~ii 461 (523)
...+.+++...+.+.. .. ..+...+..++++ ++..+.......++.|.+|++.|+++.|+.+.+.++ |.++
T Consensus 330 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 330 CIALALIIFTLGVYQH----AT---SEYMYLASLFALG-FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred HHHHHHHHHHHHHHHh----cC---cHHHHHHHHHHHH-HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence 5443333222211111 01 1111112222222 122222112224456999999999999999999997 7799
Q ss_pred HHHHHHHHHH------------hhCchhHHHHHHHHHHHHHHHhhe
Q 009862 462 VTYTLPVMLS------------SIGLAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 462 g~~l~~~l~~------------~~G~~~~f~i~~i~~~i~~v~~~~ 495 (523)
+|.+.|.+.+ ..+|...|.++.++++++.++..+
T Consensus 402 ~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 402 AKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 567888888876666665555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=134.16 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 381 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll 381 (523)
.++++++..++..+ ..+......|.+.+++|. +. ....+......++.+++.++.|+++||+|||++++
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 84 (406)
T PRK11551 16 TIGLCFLVALLEGL-DLQSAGVAAPRMAQEFGL---------DV-AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI 84 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 34444444443322 345566667877776544 34 56677777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH
Q 009862 382 TTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII 461 (523)
Q Consensus 382 ~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii 461 (523)
.+.++.+++.+++.+..++. .+++..++.+.......+....++.|.+|++.|++++++.+....+|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 85 VSVALFGLFSLATAQAWDFP----------SLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred HHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777666555443322 23333333333333444555567899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 462 VTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 462 g~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
++.+.+.+.+..+|+..|++.+++.++..++..+++||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999888888889998888877766666666666677763
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=132.61 Aligned_cols=173 Identities=11% Similarity=0.142 Sum_probs=116.5
Q ss_pred hhhhchHHHHHhcCchhhhhcc--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 320 GVLYYTPQILEQAGVEVLLSNL--GISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~l--gls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
....+.|.++++.|.+. .. ++.. .......++..+..+++.++.++++||+|||++++++.++.+++.+++...
T Consensus 226 ~~~~~~~~~~~~~g~~~---~~~~~~~~-~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNP---EFADSFVV-KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred HHHHhHHHHHHHhcccc---cccchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33456677776654310 00 0111 334555667778888999999999999999999999888777765554431
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhh---
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICA-MAYWICDIIVTYTLPVMLSSI--- 473 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~-~~~~lG~iig~~l~~~l~~~~--- 473 (523)
.. .....+..++..++...+.. ...+....+++|.+|++.|+++.|+.+ +...+|.+++|.+.|.+.+..
T Consensus 302 ~~-----~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~ 375 (418)
T TIGR00889 302 DP-----EYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY 375 (418)
T ss_pred Cc-----chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 10 00001111222222222222 333444466799999999999999997 567899999999999999874
Q ss_pred ---CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 474 ---GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 474 ---G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
||+..|.+.++++++++++.++++||+++
T Consensus 376 ~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 376 GTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 57888888888888888888888888865
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=132.84 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=125.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.....+|.+.+++|. +. ....+..+...++.+++.++.|+++||+|||+++.++.++.+++.++..+.
T Consensus 19 ~~~~~~~l~~~~~~~g~---------s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~ 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGI---------SI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS 88 (382)
T ss_pred HHHHHhChHHHHHHcCC---------CH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677888777554 33 456677778899999999999999999999999999998888887776655
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
++.. .+++..++.++......+....++.+++|++.|+.++++......++..+++.+.+.+.+..+|++
T Consensus 89 ~~~~----------~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~ 158 (382)
T PRK10091 89 SSYL----------MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRY 158 (382)
T ss_pred CcHH----------HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHH
Confidence 4433 333333343333333334444567899999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.|.+.++++++..+..++++||.+.
T Consensus 159 ~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 159 TFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9999888777776666666787543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=135.71 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-CChH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-GRRK 378 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-GRR~ 378 (523)
++.+...++..++..+ ++|++..++|.++.+ .+|++. ..+..+...+.+...++.+++|+++||+ |||+
T Consensus 8 p~~l~~l~~~~~~e~f-s~Yg~~~~L~~yL~~--------~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr 77 (493)
T PRK15462 8 PRAIYYVVALQIWEYF-SFYGMRALLILYLTN--------QLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRM 77 (493)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 4666666666666666 478899999999876 355655 4556666677788888999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc--hhhHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK--VRGICIAICAMAYW 456 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~--~Rg~a~gi~~~~~~ 456 (523)
+++++.++.++..+++....... ....+.+.+. .+..+...+...++++|+||++ .|.++.++.++..+
T Consensus 78 ~iliG~il~~lg~lll~~~~~~~--------~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n 148 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASEIHP--------SFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN 148 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcch--------hHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH
Confidence 99998888877765543211000 0111111111 1222233344456789999986 79999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 009862 457 ICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISW 490 (523)
Q Consensus 457 lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~ 490 (523)
+|++++|.+.+++.+..||+..|.+.++..++..
T Consensus 149 lG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 149 VGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887665444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-12 Score=132.06 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=121.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+...+|.+.++++ .+. ....+......++..++.++.|+++||+|||++++++.++.+++.+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~---------~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFN---------AGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA 98 (406)
T ss_pred hhhHhcchHHHHHHhC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666644 444 455566678889999999999999999999999999888887777766554
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.++. .+++..++.++......++...++.|.+|++.|.++.++......++..++|.+.+.+.+..+|++
T Consensus 99 ~~~~----------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 99 QSIE----------QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred ccHH----------HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 3332 223333333333333344555667899999999999999888888999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.+++.++++++..+..++..||++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 9988888887777766666787754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-12 Score=134.15 Aligned_cols=170 Identities=14% Similarity=0.065 Sum_probs=109.0
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CCh-HHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRR-KLLLTTIPVLIVSLII 393 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~--GRR-~lll~~~~l~~i~~l~ 393 (523)
.++.+..|+|.++.+ .+|++. ........+..++.+++.+++|+++||+ ++| .......+...++.+.
T Consensus 258 ~~~~~~~~~p~~l~~--------~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~ 328 (434)
T PRK11663 258 VRAAINDWGNLYMSE--------TLGVDL-VTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHh--------ccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 355677899999865 245555 4555666778889999999999999999 333 3322222222212111
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+..... . ... .....++..+++..+...+...+++|.+|++.|++++|++++..++|.+++|.+.+++.+..
T Consensus 329 ~~~~~~-~------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~ 400 (434)
T PRK11663 329 LWLMPF-A------SYV-MQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW 400 (434)
T ss_pred HHHccc-c------cHH-HHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc
Confidence 111110 0 011 11111111222222222222345689999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
||...|.+.++++++.++..+++.++.+++
T Consensus 401 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 401 HWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999888888877777666656655554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=131.15 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=115.7
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009862 291 WAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKL 370 (523)
Q Consensus 291 ~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~L 370 (523)
++.+++++..+..++.+.+.+ ..+...+.+..++|.++++.|. +. ........+..++.+++.++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~---------~~-~~~~~~~~~~~~~~~~g~~~~g~l 289 (426)
T PRK12307 221 MKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGF---------DT-GVVSNLMTAAAFGTVLGNIVWGLC 289 (426)
T ss_pred HHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555433333333322222 2222334566788988887544 33 344555567778899999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHH-HHhhccccccceeeecccCcchhhHHHH
Q 009862 371 MDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFC-CFVAAYGPIPNILCAEIFPTKVRGICIA 449 (523)
Q Consensus 371 sDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~i~~~~~aElfP~~~Rg~a~g 449 (523)
+||+|||+++..+.++.++.++.+....... ...+..+++.. +...+..++...++.|.+|++.|++++|
T Consensus 290 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 360 (426)
T PRK12307 290 ADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN---------YLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTG 360 (426)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHcccc---------HHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhh
Confidence 9999999988877766655444333211100 01111222222 2222333444456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhHHH-HHHHHHHHHHHHhheeccCC
Q 009862 450 ICAMAYWICDIIVTYTLPVMLSSIGLAGAFG-VYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 450 i~~~~~~lG~iig~~l~~~l~~~~G~~~~f~-i~~i~~~i~~v~~~~~lpEt 500 (523)
+++...++++.++|.+.+++.+.+|+....+ +.+..+.+......+..|++
T Consensus 361 ~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 361 LIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 9999999999999999999999888654333 33333333333333444554
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=132.54 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=103.6
Q ss_pred hhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL 394 (523)
Q Consensus 315 ~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l 394 (523)
..+++.+..|.|.|+++ .+|++. ....+...+..++.+++.++.|+++||+|||++++++.++.++..+..
T Consensus 251 ~~~~~~~~~~~p~~l~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 321 (434)
T PRK15075 251 TVSFYLITVYTPTFGKT--------VLHLSA-ADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33567888999999986 234444 445566667788889999999999999999998877654433222111
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI-CDIIVTYTLPVMLSSI 473 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l-G~iig~~l~~~l~~~~ 473 (523)
.... .. .. ..........+...++ ....+..+.++.|.+|++.|+++.++.+.+... ++.++|.+.+.+.+..
T Consensus 322 ~~~~-~~--~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 322 LSWL-VA--AP--SFARMLAVELWLSFLY-GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHH-Hc--CC--chHHHHHHHHHHHHHH-HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 1100 00 00 0111111111121222 233333445678999999999999997655554 5788999999999988
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 505 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~l 505 (523)
|+.+...++.+.+.+++++..+.+++.++.++
T Consensus 396 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK15075 396 GDKAAPGYWLSFAAVCGLIATLVLYRRRGARL 427 (434)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 86433222222222333333333444444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=133.78 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 381 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll 381 (523)
.++..++..+. .........+..|.+.++.| ++. ....+..++..++.+++.++.|+++||+|||++++
T Consensus 19 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---------~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~ 87 (426)
T PRK12307 19 ALFSAWLGYVF-DGFDFMLIFYIMYLIKADLG---------LTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMM 87 (426)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 33433333333 33345556666677766644 444 45666777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH
Q 009862 382 TTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII 461 (523)
Q Consensus 382 ~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii 461 (523)
++.++.+++.++..+..+.. .+++..++.++......+....++.|.+|++.|+++.++..+...+|.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~----------~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 88 WSIVAYSVGTGLSGLASGVI----------MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII 157 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence 99998888877766654433 33334444444444445555677799999999999999999999999999
Q ss_pred HHHHHHHHHHhhCchhHHHHHHH
Q 009862 462 VTYTLPVMLSSIGLAGAFGVYAV 484 (523)
Q Consensus 462 g~~l~~~l~~~~G~~~~f~i~~i 484 (523)
++.+.+.+.+..+|++.|++..+
T Consensus 158 ~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 158 AAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHcccCCHHHHHHHHHH
Confidence 99999999888999998876443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=132.18 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
|.++++++++.....+..-..+..-.|.+.++.++ +..+..++.+.+.+.+-++-++.|.++||.+.|..
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l----------sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f 96 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL----------SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC----------CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence 44455554444433333345667778888887555 33677777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
+.+++++++++.+++.+..+.. +..++..+-+.+-+.++.|+. ..+...||++.||+..++.|.+.++|+
T Consensus 97 m~~gLilsai~nil~Gfs~s~~---------~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGG 166 (448)
T COG2271 97 MAFGLILSAIVNILFGFSPSLF---------LFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGG 166 (448)
T ss_pred ehHHHHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhccc
Confidence 9999999999999988766544 333444444445566666665 556899999999999999999999999
Q ss_pred HHHHHHH--HHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 460 IIVTYTL--PVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 460 iig~~l~--~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+.+.+. +.+..+.+|+..|++-++++++.++++++.+++|
T Consensus 167 al~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 167 ALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred chHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999 8888888999999999999999999888877655
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=135.63 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++.+...++..++..+ ..+.+....|.+.+++|. +. ....+......++.+++.++.|+++||+|||++
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---------s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 87 (496)
T PRK03893 19 WKAFSAAWLGYLLDGF-DFVLITLVLTEVQGEFGL---------TT-VQAASLISAAFISRWFGGLLLGAMGDRYGRRLA 87 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3434444433333333 355666677887776544 44 455566667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
++++.++.+++.+++.+..++. .+++..++.++...+..+....++.|.+|.+.|+++.++..+...+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 88 MVISIVLFSVGTLACGFAPGYW----------TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 9998888887777766544333 333344444444444455555677999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 460 IIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 460 iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
++++.+.+.+.+..+|++.|++.++.++ ..++....+||+
T Consensus 158 ~~~~~~~~~l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p~~ 197 (496)
T PRK03893 158 VVAAQVYSLVVPVWGWRALFFIGILPII-FALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHhCCCc
Confidence 9999999999999999988876443333 333333445654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=126.40 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=105.5
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETL 400 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~ 400 (523)
...+.+.+.++.+ .+. ........+..++.+++.++.++++||+|||+.+.++.++.+++.+.+.+....
T Consensus 224 ~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T TIGR00890 224 LIGLYKPYGQSLG---------LSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML 293 (377)
T ss_pred HHHHHHHHHHHcC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc
Confidence 3445555655543 333 445566677888999999999999999999999888877777766554432211
Q ss_pred hccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHH
Q 009862 401 QLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480 (523)
Q Consensus 401 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~ 480 (523)
. ....+....+. +.......++...+++|.+|++.|+++.|+.+....+|..++|.+.+.+.+..||...|.
T Consensus 294 ~-------~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~ 365 (377)
T TIGR00890 294 N-------DVLFLATVALV-FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFI 365 (377)
T ss_pred h-------hHHHHHHHHHH-HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Confidence 1 11111112222 222223334444667899999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHH
Q 009862 481 VYAVVCFIS 489 (523)
Q Consensus 481 i~~i~~~i~ 489 (523)
+.+++++++
T Consensus 366 ~~~~~~~~~ 374 (377)
T TIGR00890 366 VTGAFALTS 374 (377)
T ss_pred HHHHHHHHh
Confidence 777666554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=127.34 Aligned_cols=168 Identities=17% Similarity=0.090 Sum_probs=120.5
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.......+|.+..+.+. +.....++.++..++.+++.++.|+++||+|||++++.+.++.+++.+++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~----------s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 15 TAITQVALPLYVLAGTG----------SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777776543 23566777788889999999999999999999999999888777766665554
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.... . .+.+ .+++..++.++......+....+++|++|++.|+++.++.+....+|.++++.+.+.+.+..+|++
T Consensus 85 ~~~~---~-~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 85 ALLG---G-LNIW-QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred HHcC---C-CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3111 0 0111 233333334444444556666788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhe-eccCC
Q 009862 478 AFGVYAVVCFISWVFVFL-RVPET 500 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~-~lpEt 500 (523)
.+++.++.+++..++.++ ..|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC
Confidence 888777666555444433 33443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-12 Score=130.79 Aligned_cols=163 Identities=13% Similarity=-0.006 Sum_probs=117.4
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+...+|.+.+++|. +. ....++.+.+.+++.++.++.|+++||+|||++++.+......+.+.....
T Consensus 7 ~~~~~~~lp~i~~~~~~---------s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 76 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDV---------SK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP 76 (368)
T ss_pred HHHHHhhHHHHHHHhCc---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888877544 44 556667778889999999999999999999988765544443332211111
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.++ ..+++..++.+..... ........+|.+|++.|++++++..+...+|.++++.+.+.+.+..||+.
T Consensus 77 ~~~----------~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~ 145 (368)
T TIGR00903 77 FNY----------EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQL 145 (368)
T ss_pred ccH----------HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 111 1334444443333322 23333445899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
.|++.++++++..++.++++||++
T Consensus 146 ~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 146 LIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999988888888777777888864
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-12 Score=134.84 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCCh
Q 009862 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRR 377 (523)
Q Consensus 299 ~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR 377 (523)
++|.+++.+++.++..+ ++|++..+++.|+++ ++|++. ....++...+.+...+..+++|+++|| +|||
T Consensus 12 ~p~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~--------~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 12 QPRPFFMIFFVELWERF-GYYGVQGILAVFFVK--------QLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred CChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 45777777777766666 478888888888876 456655 445555556666666777899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc--hhhHHHHHHHHHH
Q 009862 378 KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK--VRGICIAICAMAY 455 (523)
Q Consensus 378 ~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~--~Rg~a~gi~~~~~ 455 (523)
++++++.++.+++.+++.+..... ..+++.....+...+...+...++++|.||++ .|+.++++.++..
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~~~---------~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ 152 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLLKP---------DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI 152 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence 999999999988887776543211 11222333334444455566667889999987 4578899999999
Q ss_pred HHHHHHHHHHHHHHHHhhCchhHHHHHHH
Q 009862 456 WICDIIVTYTLPVMLSSIGLAGAFGVYAV 484 (523)
Q Consensus 456 ~lG~iig~~l~~~l~~~~G~~~~f~i~~i 484 (523)
++|.+++|.+.|++.+..||++.|++..+
T Consensus 153 nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 153 NIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 99999999999999999999998887544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=128.33 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=120.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchh----hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSES----ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLI 392 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~----~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l 392 (523)
+.+....++|.++++.|. +..+ ...++.++..+...++.++.|+++||+|||++++.+.++.+++.+
T Consensus 29 ~~~~~~~~l~~~~~~~g~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGV---------TGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHhhhhHHHHHHHhCC---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 455677788999887554 3222 235566778888899999999999999999999988877777766
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
++....++. .+++..++.++.. +..+....++.+.+|++.|+++.++.+....+|.++++.+.+.+.+.
T Consensus 100 ~~~~~~~~~----------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 100 LMGLAQNIW----------QFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred HHHHHhhHH----------HHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433322 2222222323222 23344445667899999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 473 IGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 473 ~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+|+..+++.+++.++..++.++++|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 169 YGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999888888777777666666664
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=127.26 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+...+|.+.+++++ +. ....+..++..++..++.+++|+++||+|||++++.+.++.+++.+++.+.
T Consensus 23 ~~~~g~~~~~i~~~~~~---------s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~ 92 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNL---------PV-SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS 92 (394)
T ss_pred HHHHhhhhHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667778888877544 34 556666778888999999999999999999999998888777777666544
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCch
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS-SIGLA 476 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~-~~G~~ 476 (523)
.+.. .+++..++.++......+....++.|.+|++.|+.++++.+....+++.++|.+.+.+.. ..+|+
T Consensus 93 ~~~~----------~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~ 162 (394)
T PRK03699 93 HSLA----------LFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162 (394)
T ss_pred chHH----------HHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 3322 233333333333333344455667899999999999999888889999999999888765 57999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009862 477 GAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~ 494 (523)
+.|.+.++++++..++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 163 WVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888877766555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=129.46 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=120.9
Q ss_pred hhhhhhchH-HHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTP-QILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p-~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
...+....| .+.++ +|.+. ....++.++..++..++.++.|+++||+|||++++++.++.+++.++..+
T Consensus 12 ~~~~~~~~~~~~~~~---------~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 12 FSIISPALPLYLAEE---------LGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHH-HHHCC---------STTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---------cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 444555666 44444 45555 45666777888999999999999999999999999998888887444443
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+. + .+++..++.++......+....++.|.+|.+.|++++++.+....+|.++++.+.+.+.+..+|+
T Consensus 82 ~~~~---------~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~ 151 (352)
T PF07690_consen 82 ASNF---------W-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR 151 (352)
T ss_dssp HCCH---------H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred hhhH---------H-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc
Confidence 2221 2 34444444455545556666678899999999999999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+.|++.++++++..++..++++++
T Consensus 152 ~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 152 WAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccccccchhhhhhhhHhhhhhhc
Confidence 999999998888877644545433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=132.47 Aligned_cols=164 Identities=14% Similarity=0.083 Sum_probs=126.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+....|.+.+++|. +. ....++.++..++.+++.++.|+++||+|||++++++.++.+++.+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGL---------SK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred HHhhhhhhHHHHHHhCC---------CH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 45566677877776544 44 566677778889999999999999999999999999988888887777655
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCch
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVT-YTLPVMLSSIGLA 476 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~-~l~~~l~~~~G~~ 476 (523)
.+.. .+++..++.+++.....+....++.|.+|++.|++++++.+....+|.++++ .+.+.+....+|+
T Consensus 81 ~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00881 81 TSLW----------VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH 150 (379)
T ss_pred hhHH----------HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence 4333 3344444444555555666777889999999999999999999999999999 4666677778999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+.|++.++++++..++.+++.||++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCCCc
Confidence 9988888877777777777777653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=129.48 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=125.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.......+|.+.+++|. +. ....+...+..++..++.+++|+++||+|||+++..+.++.+++.+.+.+.
T Consensus 7 ~~~~~p~~~~~~~~~~~---------s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~ 76 (377)
T PRK11102 7 IDMYLPALPVIAADFGV---------SA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA 76 (377)
T ss_pred HHHHhccHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888877544 34 566667778889999999999999999999999999988888877776654
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+.. .+++..++.+++.....+....++.|.+|++.|++++++.+....+|.++++.+.+.+.+..+|++
T Consensus 77 ~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 146 (377)
T PRK11102 77 QTID----------QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHA 146 (377)
T ss_pred ccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence 4332 233333333343444445555677999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeccCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
.|++.++++++..++..+++||++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 147 IFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccC
Confidence 998888888777777666677753
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=125.35 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=115.6
Q ss_pred hhhhhhhhhchHH-HHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQ-ILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLII 393 (523)
Q Consensus 315 ~~g~~~i~~~~p~-il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~ 393 (523)
+...+.+..+.|. +.++ +|++. ....++..+..++.+++.+++|+++||+|||++++++.++.+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~---------~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDD---------LGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHhHHhhhHHHHHH---------hCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3345677888886 4444 45555 56667777889999999999999999999999999998888888777
Q ss_pred HHHHH-hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 394 LVISE-TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 394 l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
+.+.. ++. .+++..++.+.....+ +....++++.+|++.|+++.++......+|..+++.+.+.+...
T Consensus 84 ~~~~~~~~~----------~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 84 AGLAVQSYS----------VLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHhhhHH----------HHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66544 332 2333333333333333 33446678999999999999999988889998888888877653
Q ss_pred ----------hCchhHH-HHHHHHHHHHHHHhheeccCC
Q 009862 473 ----------IGLAGAF-GVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 473 ----------~G~~~~f-~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+|++.+ ++.+++..+..++.+++.+++
T Consensus 153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3788888 443555444444444445544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=129.66 Aligned_cols=164 Identities=13% Similarity=0.014 Sum_probs=110.3
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETL 400 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~ 400 (523)
+.+.+|.+.++ |+ +. ....+..++..++..++.++.|+++||+|||++++++.++.+++.+++.+....
T Consensus 48 ~~~~~p~l~~~-g~---------s~-~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~ 116 (452)
T PRK11273 48 FALAMPYLVEQ-GF---------SR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 116 (452)
T ss_pred HHHhhHHHHHc-CC---------CH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc
Confidence 45566765543 44 44 566777778899999999999999999999999999988888777766543211
Q ss_pred hccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCchhHH
Q 009862 401 QLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII-VTYTLPVMLSSIGLAGAF 479 (523)
Q Consensus 401 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii-g~~l~~~l~~~~G~~~~f 479 (523)
. .. ...+++..++.+.+.....+.....+.+.+|++.|++++++.+....+|..+ ++.+...+....+|++.|
T Consensus 117 ~-----~~-~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f 190 (452)
T PRK11273 117 T-----SS-IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAAL 190 (452)
T ss_pred c-----cc-HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHH
Confidence 0 01 1122222233333333333433345689999999999999998888888644 444333333345899999
Q ss_pred HHHHHHHHHHHHHhheeccCCC
Q 009862 480 GVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 480 ~i~~i~~~i~~v~~~~~lpEtk 501 (523)
++.++++++..++..+++||+.
T Consensus 191 ~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 191 YMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHHHHHHccCCH
Confidence 8888877777777767677653
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=128.29 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=120.5
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.+.+..++|.++++ ++|++. ....+...+..+...+..+++|+++||+|||++++++.++.+++++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~--------~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 25 GFFVVFPLISIRFVD--------QLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHH--------HhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 355666777776654 345555 55666666777888888999999999999999999998888887777654
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.+ .+++..++.++......+...+++.+.+|++.|++++++......+|..+++.+.+.+. ..+|+
T Consensus 96 ~~~~~----------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~ 164 (400)
T PRK11646 96 AHEPW----------LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFR 164 (400)
T ss_pred hccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 33222 22333333333333344555566789999999999999999999999999999999998 67999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+.|++.++++++..++..+++||.
T Consensus 165 ~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 165 LVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999888777776665555556664
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-11 Score=126.76 Aligned_cols=168 Identities=13% Similarity=0.206 Sum_probs=103.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHHHHH-HHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRRKLLLT-TIPVLIVSLIIL 394 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~--GRR~lll~-~~~l~~i~~l~l 394 (523)
.+.+..|.|.++++. .|++. ........+..++.+++.+++|+++||+ +||....+ ...+..++.+++
T Consensus 269 ~~~~~~~~P~~l~~~--------~g~s~-~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~ 339 (452)
T PRK11273 269 RYGILDWSPTYLKEV--------KHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 339 (452)
T ss_pred HHHHHHHHHHHHHHh--------cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence 567788999999872 34444 3455556677788889999999999999 55543222 222222222211
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII-VTYTLPVMLSSI 473 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii-g~~l~~~l~~~~ 473 (523)
.+.. .. ..+...+.+..+. ....+.......++.|.+|++.|++++|+.+...++|+.+ +|.+.+.+.+..
T Consensus 340 ~~~~-----~~--~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~ 411 (452)
T PRK11273 340 WLNP-----AG--NPTVDMACMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 411 (452)
T ss_pred HHhc-----cc--ChHHHHHHHHHHH-HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 1110 00 0111111112221 1111211222344579999999999999999998998765 799999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhe-eccCCCC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFL-RVPETKG 502 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~-~lpEtk~ 502 (523)
|+...|++.+++++++.++..+ ..+|+|+
T Consensus 412 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 412 GWDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999998888877776665553 3345544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=123.02 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=107.4
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL-TTIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll-~~~~l~~i~~l~l~ 395 (523)
..+.+..|.|.++++ .++.+. ....+...+..++.+++.++.++++||++||+..+ .......++.+...
T Consensus 230 ~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQ--------ERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS 300 (399)
T ss_pred HHHHHHHHHHHHHHH--------HhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 456777888988866 234444 45556666778889999999999999999996211 11111111111111
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG- 474 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G- 474 (523)
..... ....... ...+ ......++..+..+..+.+++|.+|++.|++++++.+.+.++|..+++.+.+.+.+..|
T Consensus 301 ~~~~~--~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~ 376 (399)
T TIGR00893 301 LLMFA--TNYVNIP-YAAL-ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS 376 (399)
T ss_pred HHHHH--hccchhH-HHHH-HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence 11100 0000111 1122 22222233333567777888999999999999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHHHhhe
Q 009862 475 LAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~ 495 (523)
+...+.+.++++++..++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 377 FAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 888887777776666555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=129.86 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRKL 379 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~l 379 (523)
+.++..++..++..+ +++++..++|.|+.+.+ .+|++. ..+..+...+.++..++.+++|+++|| +|||++
T Consensus 10 ~~~~~l~~~~~~~~~-~~~~~~~~L~~yl~~~~------~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 10 KPLFTLFFVELWERF-SYYGMQGILAVYLVQQA------GLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT 81 (475)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCC------CCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence 444444444444344 57888999999987621 145555 566667778889999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch---hhHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV---RGICIAICAMAYW 456 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~---Rg~a~gi~~~~~~ 456 (523)
++++.++.+++.+++.+..+.. .+++..++.+...+...+...+++++++|++. |+++.++.++..+
T Consensus 82 l~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n 151 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIYPD----------LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSIN 151 (475)
T ss_pred HHHHHHHHHHHHHHHHhcccHh----------HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHH
Confidence 9999988888777665433221 22222333333344455666677789998754 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 009862 457 ICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISW 490 (523)
Q Consensus 457 lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~ 490 (523)
+|.++++.+.+++.+..||+..|.+.++.+++..
T Consensus 152 iG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 152 IGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887765554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=129.12 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=112.6
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+..+.|.+.+++|. +. ....++..+..+...++.++.|+++||+|||++++++.++.++..+++.+..
T Consensus 36 ~~~~~~~~~i~~~~g~---------s~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQA---------TY-SETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS 105 (455)
T ss_pred cchhhhHHHHHHHhCc---------ch-hHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh
Confidence 4556677888777544 34 4555566677777788889999999999999999998888877776665544
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
+.. ..++...++.++......+....++.+.+| +.|+++.++.+....+|..+++.+.+.+.+.+||++.
T Consensus 106 ~~~---------~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 106 NVI---------ELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred hHH---------HHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 333 111222222222222222333355678886 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhheecc
Q 009862 479 FGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~~lp 498 (523)
|++.+++++++.+..++..+
T Consensus 176 f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99988877666554444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=125.76 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=117.5
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+..+.|.+.+++|. +. ....+..++..++..++.++.|+++||+|||++++++.++.+++.+...+.
T Consensus 19 ~~~~~~~~~~~~~~~~~---------s~-~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGV---------GV-TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhhhhHHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence 44566778888777544 34 567777889999999999999999999999999999988888887776665
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.++. .+++...+.+.......+.....+.+.+| +.|+++.++......+|.++++.+.+.+.+..+|++
T Consensus 89 ~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (377)
T TIGR00890 89 DSLA----------ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPA 157 (377)
T ss_pred HHHH----------HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHH
Confidence 5443 22222223222222222233344567777 569999999999999998888878888888889999
Q ss_pred HHHHHHHHHHHHHHHhheeccC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpE 499 (523)
.|.+.++++++..+..++++++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 158 AFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 9998888887777666655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=124.26 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=120.2
Q ss_pred Cchh--HHHhhhhhhhhhhhhhhhcCCCCCCCCCCCcccccCcccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhch
Q 009862 248 EGEY--IQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 325 (523)
Q Consensus 248 ~~~~--~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~ 325 (523)
+||. ...+++.....+..+..++|+|+.+.... +..+....++.++++ +.++..++..+ +....++++..|+
T Consensus 142 gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~--~~~~~~~~~~~ll~~---~~~~~~~~~~~-~~~~~~~~~~~wl 215 (368)
T TIGR00903 142 GLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGF--GFKDAVKEFGALAGR---KDLWIIGAILG-FGVALFDNLAIWL 215 (368)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc--chHHHHHHHHHHHcC---hhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4554 33345544555556667788765432110 000001134555554 33333333333 3344577889999
Q ss_pred HHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh---HHHHH-HHHHHHHHHHHHHHHHhhh
Q 009862 326 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR---KLLLT-TIPVLIVSLIILVISETLQ 401 (523)
Q Consensus 326 p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR---~lll~-~~~l~~i~~l~l~~~~~~~ 401 (523)
|+++++.|+ +. . ......+.. +.+.+..++++||+.|| +.... ..++.+++++++....
T Consensus 216 p~~L~~~g~---------s~-~-~~~~~~l~~---~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~--- 278 (368)
T TIGR00903 216 EAALRPAGL---------ED-I-AGDAVALAI---LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL--- 278 (368)
T ss_pred HHHHHHCCC---------Ch-H-HHHHHHHHH---HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 999987544 22 2 222333333 34444557888887653 33232 2222222222222111
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHH
Q 009862 402 LISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGV 481 (523)
Q Consensus 402 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i 481 (523)
. .... +.+....+++.....+..+++.+|++|++.|++++|+.+..++++++++|.+.+.+.. +....|.+
T Consensus 279 ---~---~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~ 349 (368)
T TIGR00903 279 ---N---RLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTF 349 (368)
T ss_pred ---c---cHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 0 1111 2222223333434444556778999999999999999999999999999999988773 66677888
Q ss_pred HHHHHHHHHHHhh
Q 009862 482 YAVVCFISWVFVF 494 (523)
Q Consensus 482 ~~i~~~i~~v~~~ 494 (523)
+++.++++++.+.
T Consensus 350 ~~~~~~i~~~~~~ 362 (368)
T TIGR00903 350 LAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777666654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-11 Score=124.02 Aligned_cols=147 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHH
Q 009862 341 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420 (523)
Q Consensus 341 lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 420 (523)
++.+. ....+..++..++..++.+++|+++||+|||++++.+.++.+++.+++.+..++. .+++..++.
T Consensus 36 ~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~ 104 (401)
T PRK11043 36 LQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA----------QLLVLRFVQ 104 (401)
T ss_pred HCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHH
Confidence 44444 5667777788899999999999999999999999988887777766665443322 222222222
Q ss_pred HHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 421 ~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
++......+....++.|.+|.+.|+...+..+....++..++|.+.+++.+..+|+..+++.+++.++..++.+++.+
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222222233334566899999999999999888899999999999999999999999988887777766655544333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=119.24 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=101.4
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
....+.|.++.+ .+|.+. ........+..+..+++.++.+++.||+|||+++.++.++..++.+.+....+
T Consensus 217 ~~~~~~~~~~~~--------~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T TIGR00899 217 LYIINMPLLIIH--------ELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS 287 (375)
T ss_pred HHHhhhHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777654 244444 33444444555667788899999999999999888776655444333322111
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHH
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAF 479 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f 479 (523)
. +...+...+...+.+ ...+....++.|.+|.+ |++++++++...++|..+++.+.+.+.+..|++..+
T Consensus 288 ~---------~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~ 356 (375)
T TIGR00899 288 L---------WALLMLQLLNAIFIG-ILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVY 356 (375)
T ss_pred H---------HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 1 122222222222222 23344456678888865 669999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhh
Q 009862 480 GVYAVVCFISWVFVF 494 (523)
Q Consensus 480 ~i~~i~~~i~~v~~~ 494 (523)
++.++++++..++..
T Consensus 357 ~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 357 WFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=127.81 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....++.....++.+++.+++|+++||+|||+++++++++..++.++..+..... .......+++..++.++..++
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS----PKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc----cchHHHHHHHHHHHHHHHHhh
Confidence 3456777888899999999999999999999999988888877776655432210 000112344444455555555
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhCchhHHHHHH
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS-----------------------SIGLAGAFGVYA 483 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~-----------------------~~G~~~~f~i~~ 483 (523)
..+....+++|.+|++.|++++++.++...+|.++++.+...+.. ..+|+..+.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 566667889999999999999999999999999999888776543 136888886655
Q ss_pred HHHHHHHHHhheeccCC
Q 009862 484 VVCFISWVFVFLRVPET 500 (523)
Q Consensus 484 i~~~i~~v~~~~~lpEt 500 (523)
+.+++ .++..+++||+
T Consensus 212 ip~~i-~~~~~~~lpES 227 (502)
T TIGR00887 212 VPALL-ALYFRLTIPET 227 (502)
T ss_pred HHHHH-HHHHHHhCCCC
Confidence 54444 44445668998
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-11 Score=126.65 Aligned_cols=159 Identities=16% Similarity=0.041 Sum_probs=114.3
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc--cchhhhHHHHHHHHHH
Q 009862 341 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL--ISPVLKAGISTACVII 418 (523)
Q Consensus 341 lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~--~~~~~~~~~~~i~~~~ 418 (523)
++.+. ....+..++..++.+++.+++|+++||+|||++++++.++.+++.+...+...... .......+..+++..+
T Consensus 50 ~~~~~-~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAAN-SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence 35555 45567778889999999999999999999999999998888777665554211100 0011112234455556
Q ss_pred HHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCchhHHHHHHHHHHHHH
Q 009862 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML--------SSIGLAGAFGVYAVVCFISW 490 (523)
Q Consensus 419 ~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~--------~~~G~~~~f~i~~i~~~i~~ 490 (523)
+.++..++..+...++++|++|++.|++++++......+|.++++.+...+. ...||++.|++.+++.++..
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~ 208 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL 208 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence 6666666667777788899999999999999999998999888877665443 34689999988776666654
Q ss_pred HHhheeccCCC
Q 009862 491 VFVFLRVPETK 501 (523)
Q Consensus 491 v~~~~~lpEtk 501 (523)
+ ..+++||+.
T Consensus 209 ~-~~~~l~~s~ 218 (479)
T PRK10077 209 M-LLYFVPETP 218 (479)
T ss_pred H-HHHcCCCCc
Confidence 4 455688874
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=121.55 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=101.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
++.+..+.|.++++ .++++. ....++..+..+..+++.+++|+++||+|||+.+..+.+..++.++.+...
T Consensus 232 ~~~~~~~~p~~l~~--------~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK15011 232 NSLYIINMPLFIIN--------ELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA 302 (393)
T ss_pred HHHHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888765 345555 344444455667778889999999999999998776655444433222211
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+ .+..++...+...+.+... +....+..|.+|.+ |++++++++...++|..+++.+.+.+.+..||+.
T Consensus 303 ~~---------~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~ 371 (393)
T PRK15011 303 HS---------PAILLGLQLLNAIYIGILG-GIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHA 371 (393)
T ss_pred hh---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 1111211111111212111 12234457888864 9999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhheeccCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+.+..+++++.. +.++++||+
T Consensus 372 ~~~~~~~~~~~~~-~~~~~~~~~ 393 (393)
T PRK15011 372 VFWFALVMIIATL-FCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHH-HHHHhhcCC
Confidence 8776665555544 444455653
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-11 Score=127.92 Aligned_cols=146 Identities=16% Similarity=0.058 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccc
Q 009862 353 SAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPN 432 (523)
Q Consensus 353 ~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 432 (523)
..+..++..++.+++|+++||+|||++++++.++++++.+++++.+++...+ . .....+++..++.++..++..+...
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g-~-~a~~~l~~~R~l~G~g~g~~~~~~~ 140 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIG-I-WAPILLLLCKMAQGFSVGGEYTGAS 140 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHH-H-HHHHHHHHHHHHHHhHhHhhHHHHH
Confidence 3566688889999999999999999999999999999988888766543000 0 0111244455555555556666666
Q ss_pred eeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 433 ILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS--------SIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 433 ~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~--------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
.+++|.+|++.|+...++......+|.++++.+...+.. .+||++.|++.++++++ .++..+.+||+.
T Consensus 141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 888999999999999999888888888888776655432 57999999886654443 344455678863
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=125.26 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcc
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAY 427 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 427 (523)
....+..+..+..+++.+++++++||+|||+.+.++.++.++..+++.+..+.. . ++...++.+......
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~---------~-~~~~~~l~g~~~~~~ 332 (420)
T PRK09528 263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPL---------E-VSILKLLHAFEVPFL 332 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHH---------H-HHHHHHHHHHHHHHH
Confidence 444555667778889999999999999999998887777766655554322211 1 222222222222222
Q ss_pred ccccceeeecccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 428 GPIPNILCAEIFPTKVRGICIAI-CAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 428 ~~i~~~~~aElfP~~~Rg~a~gi-~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+....++.|.+|++.|+++.++ .++...+|.++++.+.+++.+..||+..|.+.+++.++..++.++.+++.
T Consensus 333 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 333 LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22333566888999999988766 57788899999999999999999999999888888777766666555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=126.72 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+..+.++++.....+.....+.+..|.+. +.|+ +. ....+...+..++..++.++.|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~ 94 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF---------SK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCC---------CH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence 33444444433333333334455566554 3343 34 5666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
+++.++.+++.+++....... .....+.+..++.+++.....+....++.|++|++.|++++++.++...+|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ 168 (438)
T TIGR00712 95 PAGLILSAAVMLLMGFVPWAT------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG 168 (438)
T ss_pred HHHHHHHHHHHHHHhcccccc------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH
Confidence 888877777766554322110 01112222222223322223333345568999999999999999999999999
Q ss_pred HHHHHHHHHHH-hhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 461 IVTYTLPVMLS-SIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 461 ig~~l~~~l~~-~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+++.+.+.+.. ..+|+..|++.++++++..++.++++||++
T Consensus 169 ~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99888776554 468999999888888877776666677653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-12 Score=133.23 Aligned_cols=182 Identities=18% Similarity=0.114 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+++.+++..+...- -|.+....+.+-+ .++++. ....+++..+.+...++.+++|++.||+.||.++
T Consensus 33 ~~l~il~~vnlmny~D-r~~iagv~~~v~~---------~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~ 101 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYAD-RYTIAGVLKEVQT---------YFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI 101 (493)
T ss_pred HHHHHHHHHHHHHHhh-hhhhhhhhHHHHH---------hcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence 4444555555544332 3444443333333 355555 5667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
.++..+..++.++..+...++ .+++...+.+..-+.+.|+...+++|.||...|++++++.+++..+|..
T Consensus 102 ~vG~~iW~~Av~~~~fs~~Fw----------q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg 171 (493)
T KOG1330|consen 102 AVGIFIWTLAVFASGFSNHFW----------QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG 171 (493)
T ss_pred eeHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc
Confidence 999999999999888776655 5666777777777888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 461 IVTYTLPVMLSSIG-LAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 461 ig~~l~~~l~~~~G-~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
+|-.+...+....+ |++.|.+.+++.++++++.+++++|..++
T Consensus 172 lG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 172 LGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred eeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 99888888887776 99999999999999999999988887654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=106.31 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccccccee
Q 009862 355 FTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNIL 434 (523)
Q Consensus 355 i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 434 (523)
...++.+++.++.+++.||+|||+.+..+..+..++.+.+....+.. .+.+..++.++......+..+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT----------VLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 34567788899999999999999999888877777666554432221 22222333333333344556677
Q ss_pred eecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 435 CAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 435 ~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+.|.+|++.|+++.++.+....+|..+++.+.+.+.+..+|+..+.+..+++++..++.+++.||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 799999999999999999999999999999999999888998888888888887777777767764
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=119.97 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=122.3
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.+....+.|.+.++.+. +. ....+...+..++.+++.++.|+++||+|||+.++++.++..++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 14 DRGLLSPALPLLAEDLGL---------SA-SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred hhhhhHhhHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 456677788888877544 33 56667777888999999999999999999999999998888888777665
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.. .+++..++.++......+....++.|++|++.|++.+++.+....+|..+++.+.+.+.+..+|+
T Consensus 84 ~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (352)
T cd06174 84 ASSLW----------LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153 (352)
T ss_pred hccHH----------HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 43322 33344444444444555666678899999999999999999999999999999999999998998
Q ss_pred hHHHHHHHHHHHHHHHh
Q 009862 477 GAFGVYAVVCFISWVFV 493 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~ 493 (523)
..+++.+++.++..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 154 WLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887776666555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=129.75 Aligned_cols=167 Identities=9% Similarity=-0.034 Sum_probs=117.3
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
-..+....|.+.+++ |++. ....++.+.+.+++.++.++.|+++||+|||+++.+++++.+++.+++...
T Consensus 45 r~~~~~~~~~i~~~~---------~~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 114 (467)
T PRK09556 45 RKNFKAAQNDMISTY---------GLST-TELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGAS 114 (467)
T ss_pred hcChhhhhHHHHHhc---------CCCH-HHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHH
Confidence 344555577777764 4444 566677778899999999999999999999999988888777766655542
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI---G 474 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~---G 474 (523)
.... ......+++..++.+++.....+....+++|++|++.|++++|+......+|.++++.+..++.... +
T Consensus 115 ~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~ 189 (467)
T PRK09556 115 LGSG-----SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGH 189 (467)
T ss_pred Hhcc-----cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCc
Confidence 1110 0111233334444444444445566677899999999999999999999999999998887776653 5
Q ss_pred chhHHHHHHHHHHHHHHHhheeccC
Q 009862 475 LAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
|+..|.+.+++.++.+++.++++++
T Consensus 190 ~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 190 VIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777777766666655555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=122.62 Aligned_cols=160 Identities=12% Similarity=0.004 Sum_probs=107.1
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.......+|.++.+ ++|++. ....+..++..+...++.+++|+++||+|||++++++.++..++.+....
T Consensus 30 ~~~~~~p~l~~~l~~--------~lg~s~-~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (392)
T PRK12382 30 TVGLPLPVIPLFVHH--------DLGFGN-TMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL 100 (392)
T ss_pred HHHHHhhhhhHHHHH--------hcCCcH-HHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 345556667766543 345555 56677777889999999999999999999999999887776655443222
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..... .........+++..++.+.......+....++.|.+|++.|++++++......+|..+++.+.+.+.+..||+
T Consensus 101 ~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (392)
T PRK12382 101 AAILP--VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA 178 (392)
T ss_pred hhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 11100 0001111223333333333333333444456689999999999999999999999999999999999988988
Q ss_pred hHHHHHHHHHH
Q 009862 477 GAFGVYAVVCF 487 (523)
Q Consensus 477 ~~f~i~~i~~~ 487 (523)
..+.+..++.+
T Consensus 179 ~~~~~~~~~~~ 189 (392)
T PRK12382 179 ALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHH
Confidence 76655444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=118.82 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred hhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHHHHHH
Q 009862 316 SGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL-TTIPVLIVSLIIL 394 (523)
Q Consensus 316 ~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll-~~~~l~~i~~l~l 394 (523)
.+++++.+|.|.++++.|. +. ........+..++.+++.++.|+++||+|||+.+. .+.+.++++.+++
T Consensus 236 ~~~~~~~~~~p~~~~~~g~---------s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAELGF---------ST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHHHHHHHHHHHHcCC---------Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 3467788899999877544 34 34455556777889999999999999999888764 2333333333332
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
....... .+ ..+..++..++++.+.. ...+.. ..+.|..| +.|++++|+.+....++.+++|.+.+.+.+..|
T Consensus 306 ~~~~~~~-~~---~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 306 YYIPQHF-GH---SFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred HHHHHcc-CC---cHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2221110 00 11112222222222222 233333 33467655 589999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhe
Q 009862 475 LAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~ 495 (523)
+...+++.+++.++..++.+|
T Consensus 379 ~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 379 AIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 988888888777776665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=124.84 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRK 378 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~ 378 (523)
++.++..++..++..+ ++|++..++|.++.+ ++|++... +...............+++|+++|| +|||+
T Consensus 20 p~~~~~~~~~~~~~~~-~~y~~~~~l~~yl~~--------~lg~s~~~-a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~ 89 (500)
T PRK09584 20 PKAFYLIFSIELWERF-GYYGLQGIMAVYLVK--------QLGMSEAD-SITLFSSFSALVYGLVAIGGWLGDKVLGTKR 89 (500)
T ss_pred CchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 3556666666666555 478888899999865 45665543 3333434444444555789999999 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch--hhHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV--RGICIAICAMAYW 456 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~--Rg~a~gi~~~~~~ 456 (523)
+++++.++.+++.+++.+..... ..+.+..++.++..+...+....+++|+||.+. |..++++.+++.+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~~~---------~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~ 160 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGHDA---------GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSIN 160 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHH
Confidence 99999888877766655422110 112222223333333345555567899998643 4567888899999
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 009862 457 ICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFI 488 (523)
Q Consensus 457 lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i 488 (523)
+|.+++|.+.+++.+.+||++.|.+.++..++
T Consensus 161 iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 161 IGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876654443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=122.40 Aligned_cols=162 Identities=14% Similarity=0.028 Sum_probs=112.6
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.......+|.++++ ++|.+. ....++.++..++.+++.++.|+++||+|||++++.+.++.+++.+.+.+
T Consensus 30 ~~~~~~~~l~~~i~~--------~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (399)
T PRK05122 30 TIGLPLAVLPGYVHD--------QLGFSA-FLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLL 100 (399)
T ss_pred HHHHHHHHHHHHHHH--------hcCccH-HHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 355566677776544 345545 56677778888999999999999999999999999988877666554433
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..... .........+++..++.++......+....++.|.+|.+.|++++++......+|.++++.+.+.+.+.+||+
T Consensus 101 ~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 178 (399)
T PRK05122 101 AGLLA--AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA 178 (399)
T ss_pred hhhhh--ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence 22111 0000111223333344444444445555566689999999999999998999999999999999999999998
Q ss_pred hHHHHHHHHHHHH
Q 009862 477 GAFGVYAVVCFIS 489 (523)
Q Consensus 477 ~~f~i~~i~~~i~ 489 (523)
..+++..+++++.
T Consensus 179 ~~~~~~~~~~~~~ 191 (399)
T PRK05122 179 GLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=120.01 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=114.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+++.+..|.|.++++.|. +. ........+..++.+++.++.+++.||+|||+.++++..+.+++.+++..
T Consensus 220 ~~~~~~~~lp~~l~~~g~---------s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 289 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGA---------SA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW 289 (393)
T ss_pred HHHHHHHHHHHHHHHcCC---------Ch-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 466788899999887544 33 45556667888999999999999999999999888876666555443332
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG- 474 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G- 474 (523)
..... . .. ...+....+ ....+.......+.+ |++.|++.+++.+....++..++|.+.+++.+..|
T Consensus 290 ~~~~~-------~--~~-~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~ 358 (393)
T PRK09705 290 LPLQL-------P--VL-WAMVCGLGL-GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN 358 (393)
T ss_pred ccchH-------H--HH-HHHHHHHhc-cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11100 0 11 111121122 222233333445555 46789999999999999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHHHhheeccCCCCCC
Q 009862 475 LAGAFGVYAVVCFISWVFVFLRVPETKGMP 504 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~ 504 (523)
+...+.+.++++++..+...++.|||+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 359 YLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 555566666666666666677789987754
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=120.80 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT 382 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~ 382 (523)
++......++... .++.+..|.|.++++ .++.+. ........+..++.+++.++.++++||+|||+.++.
T Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 290 (394)
T TIGR00883 221 FLLGLGLVIATTT-TFYLITTYLPTYLTQ--------TLGLSA-NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII 290 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------hcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 4444444444333 356677888988854 244444 445556667788889999999999999999998775
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHH-HHHHHHHHHH
Q 009862 383 TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAIC-AMAYWICDII 461 (523)
Q Consensus 383 ~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~-~~~~~lG~ii 461 (523)
...+..++.+.+..... . .. ..+..++.. +..+++.....+....+++|.+|++.|+++.++. ++...+|..+
T Consensus 291 ~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ 364 (394)
T TIGR00883 291 FTVLAALLAVPLLMALL-D-SG---SFTLFFFLV-LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF 364 (394)
T ss_pred HHHHHHHHHHHHHHHHh-c-CC---chHHHHHHH-HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence 55444333321111110 0 00 111222222 2222333333444557789999999999999985 4556688889
Q ss_pred HHHHHHHHHHhhC-chhHHHHHH
Q 009862 462 VTYTLPVMLSSIG-LAGAFGVYA 483 (523)
Q Consensus 462 g~~l~~~l~~~~G-~~~~f~i~~ 483 (523)
+|.+.+.+.+..| |...+++..
T Consensus 365 ~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 365 APYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHHHHHHHHcCcchhHHHHHH
Confidence 9999999999888 554443333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=124.00 Aligned_cols=191 Identities=18% Similarity=0.092 Sum_probs=124.1
Q ss_pred cHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 290 SWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMK 369 (523)
Q Consensus 290 ~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~ 369 (523)
.++.+++++..+.+++..++..+ +........|.+.++.+. +. ....+......++.+++.++.|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------s~-~~~g~~~~~~~l~~~~~~~~~G~ 74 (417)
T PRK10489 9 DLSLLKTHPAFRAVFIARFISIF----GLGLLGVAVPVQIQMMTG---------ST-LQVGLSVTLTGGAMFIGLMVGGV 74 (417)
T ss_pred HHHHHHhCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHC---------CH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence 34555554444444444333322 234556677888776433 23 56677778889999999999999
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHH
Q 009862 370 LMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIA 449 (523)
Q Consensus 370 LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~g 449 (523)
++||+|||++++++.++.+++.+.+....... ....+ .+++..++.+++.....+....++.+++|.+.|+++.+
T Consensus 75 l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (417)
T PRK10489 75 LADRYDRKKLILLARGTCGLGFIGLALNAFLP----EPSLL-AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGA 149 (417)
T ss_pred HhhhcCCceEEEehHHHHHHHHHHHHHHHHcC----CCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 99999999998887776666555443211100 00111 22222222222222223333456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 450 ICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 450 i~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+.++...+|.++++.+.+.+.+..+|++.+++.++..++..++ .+.+|++
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 199 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPAL 199 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 9999999999999999999999889988887766655554443 4456664
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=119.87 Aligned_cols=184 Identities=13% Similarity=0.022 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 381 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll 381 (523)
+.+....+.+...|...+.+....+.+-+. +++++. .+..++.++..+.+.++.+..|++.||+|.|+++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~--------~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~ 104 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKI--------GFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 444445555555554444444444454442 356666 45666666788888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH
Q 009862 382 TTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII 461 (523)
Q Consensus 382 ~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii 461 (523)
++.++.++..+.+.+..... . .....++++.++.++.+. ..+.....++++||++.||+++|+....+++|..+
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~----~-~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNP----N-TPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHHHHHHHHccc----C-CCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 98888877777666531100 0 011133333333333333 33445566799999999999999998888888888
Q ss_pred HHHHHHHHHH-----h-------------hCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 462 VTYTLPVMLS-----S-------------IGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 462 g~~l~~~l~~-----~-------------~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
++.+.|.++. . .+++.+++++.++.++.+++.+++.++.
T Consensus 179 ~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 179 MQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888877552 2 2356666777777777777777666554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=125.37 Aligned_cols=147 Identities=15% Similarity=0.087 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....++.++..++..++.+++|+++||+|||++++++.++.+++.++..+..... . ...+++..++.++....
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~r~l~G~~~~~ 143 (481)
T TIGR00879 71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL------S-VEMLIVGRVLLGIGVGI 143 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcccc------c-hHHHHHHHHHHHhhhhH
Confidence 5566777788999999999999999999999999988888877766664432211 0 11233333444444444
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTL---PVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~---~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
..+....+++|.+|++.|++++++.++...+|.++++.+. ..+....+|++.|++.++..++ .++..+++||+.
T Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~ 220 (481)
T TIGR00879 144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESP 220 (481)
T ss_pred HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence 4556667889999999999999999999999999999988 5555667899988885554444 444455578763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=120.70 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=111.6
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT-TIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~-~~~l~~i~~l~l~ 395 (523)
+.......+|.++++ ++|.+. ....++.++..+..++..++.|+++||+|||+.++. +.++.+++.+++.
T Consensus 12 ~~~~~~~~l~~~l~~--------~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 12 AGALQFPTLSLFLSE--------EVRARP-AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHhhHHHHHHHc--------ccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 345556667776654 355555 455666667778888889999999999998886554 4444444444444
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGIC--IAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a--~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+..++. .+++..++.+.+.....|....+..|..|++.|+.+ .++......+|.++++.+.+.+.+..
T Consensus 83 ~~~~~~----------~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~ 152 (375)
T TIGR00899 83 WNRNYF----------LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF 152 (375)
T ss_pred hcchHH----------HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc
Confidence 332222 222222222333333445555566788887777654 57777788899999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+|++.|++.++++++..++.++++||.+
T Consensus 153 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 153 GFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999988887777777666677754
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=121.08 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=116.3
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+...+|.+.++++. +. ....+..+++.++..++.++.|+++||+|||++++.+..+.+++.+...+.+
T Consensus 26 ~~~~~~lp~i~~~~~~---------s~-~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~ 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGM---------SF-SVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP 95 (393)
T ss_pred hccchhHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 4566778888887554 34 5677778888899999999999999999999999999999999999887766
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cchh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI-GLAG 477 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~-G~~~ 477 (523)
++. .+++..++.++......+....++.+.+| +.|+.++++......+|..+++.+.+.+.+.. +|+.
T Consensus 96 ~~~----------~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 96 QSA----------LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred chH----------HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 554 33444444444444444555566788887 77999999999999999999999999988875 7988
Q ss_pred HHHHHHHHHHHH
Q 009862 478 AFGVYAVVCFIS 489 (523)
Q Consensus 478 ~f~i~~i~~~i~ 489 (523)
.+.++++..++.
T Consensus 165 ~~~~~~~~~~~~ 176 (393)
T PRK09705 165 TLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHHH
Confidence 877665554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=123.93 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=108.2
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
..+++..|.|.++++. .|++. ....+...+..+..+++.+++++++||+++++....+.....+..+.+..
T Consensus 266 ~~~~~~~~~p~~l~~~--------~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 336 (438)
T TIGR00712 266 LRYGVLDWSPTYLKEV--------KHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIV 336 (438)
T ss_pred HHHHHHHhHHHHHHHc--------cCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH
Confidence 4567788999999872 34444 44556666778889999999999999996543222222222111111111
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCc
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD-IIVTYTLPVMLSSIGL 475 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~-iig~~l~~~l~~~~G~ 475 (523)
.. .. ... ..+...+.++++ +....+........+.|.+|++.|++++|+++...++++ +++|.+.|.+.+..|+
T Consensus 337 ~~-~~-~~~--~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~ 411 (438)
T TIGR00712 337 YW-MN-PAG--NPLVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 411 (438)
T ss_pred HH-hc-CCC--chHHHHHHHHHH-HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence 00 00 000 111111111111 111111111112345799999999999999998888875 6899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 476 AGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
...+.+.+++++++.++.+++.||.|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 412 DGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 889888888888888888887888763
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=121.47 Aligned_cols=184 Identities=9% Similarity=-0.045 Sum_probs=115.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 009862 298 GVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 377 (523)
Q Consensus 298 ~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR 377 (523)
..+|.+....+..++.++. .+....+.|.++++.|. +. ....+..+.+.++..++.+++|+++||+|||
T Consensus 10 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~g~---------s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k 78 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTG-DGLEQGWLSPFLKALGL---------SP-QQSASAFTLYGIAAAISAWISGVVAEIIGPL 78 (402)
T ss_pred CCCchhhHHHHHHHHHHHh-hhhHHHhHHHHHHHhCC---------CH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 3445555555555554443 44556677888776544 44 5666777788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 378 KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 378 ~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
++++.+.++.+++.+++...... .. .. ..+++..++.+.......+....++.+.+|++.|++++|+.++...+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~---~~--~~-~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 152 (402)
T TIGR00897 79 KTMMIGLLLWCVGHAAFIVFGLG---HA--NY-PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSI 152 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---Cc--cH-HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999888877765543221100 00 01 12222222222222222233334557889999999999999999999
Q ss_pred HH-HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 458 CD-IIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 458 G~-iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
|. ++++.+.+.+.+.+|+...++....+.++..++..++.+
T Consensus 153 g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 153 GIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 96 578888888888888655544443333333333334344
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-10 Score=116.77 Aligned_cols=159 Identities=15% Similarity=0.110 Sum_probs=102.6
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+....|.|.++.+ ..|++. ....+...+..++.+++.++.++++||++||.+.+. ..+..++.+.+....
T Consensus 222 ~~~~~~~~~~l~~--------~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~ 291 (390)
T PRK03545 222 FTAYSYIEPFVQQ--------VAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAA 291 (390)
T ss_pred HHHHHHHHHHHHH--------hcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHh
Confidence 3445566666655 244445 445555667788899999999999999998875443 333333332222111
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
. ..+...+..+++ +.......+.....+.+..| +.|++++|+++....+|..+++.+.|.+.+.+|++..
T Consensus 292 ~--------~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~ 361 (390)
T PRK03545 292 N--------SEWHLSVLSIFW-GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSI 361 (390)
T ss_pred c--------hHHHHHHHHHHH-HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 0 011122222222 22222333333345567766 5889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhheec
Q 009862 479 FGVYAVVCFISWVFVFLRV 497 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~~l 497 (523)
+.+.+++.++..++.++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 362 GYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 8888887777766665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=124.65 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=103.5
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETL 400 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~ 400 (523)
+..++|.++++ .+|++. ....++.++..++.+++.+++|+++||+|||++++++.++..+..+++.....
T Consensus 294 ~~~~lp~~l~~--------~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~- 363 (496)
T PRK03893 294 IQALLPTYLKT--------DLGYDP-HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG- 363 (496)
T ss_pred HHHHHHHHHHh--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 45678888853 244445 45566667888899999999999999999999888776655544433221110
Q ss_pred hccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHH
Q 009862 401 QLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480 (523)
Q Consensus 401 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~ 480 (523)
... ..+....++..++..+..++...++.|.+|++.|++++++.++...+|..++|.+.+.+.+.+|+...+.
T Consensus 364 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~ 436 (496)
T PRK03893 364 ------ANV-WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALA 436 (496)
T ss_pred ------cHH-HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHH
Confidence 011 1111222222223333344455677899999999999999999999999999999999999999887776
Q ss_pred HHHHHHHH
Q 009862 481 VYAVVCFI 488 (523)
Q Consensus 481 i~~i~~~i 488 (523)
+.++.+.+
T Consensus 437 ~~~~~~~~ 444 (496)
T PRK03893 437 SLSFSLTF 444 (496)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-11 Score=126.30 Aligned_cols=152 Identities=12% Similarity=-0.022 Sum_probs=116.8
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIY 419 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~ 419 (523)
+++++. ....++...+.++++++.+++|+++||+|||+++.++.++.+++.+++.+..... ...+++..++
T Consensus 70 ~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~~ 140 (465)
T TIGR00894 70 NFKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG--------IALVVFCRVI 140 (465)
T ss_pred CCCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC--------chHHHHHHHH
Confidence 456666 4556667788899999999999999999999999988887777665543321110 1234444555
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchhHHHHHHHHHHHHHHHhheecc
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS-IGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~-~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
.++......+....+++|.+|++.|++++++.+....+|.++++.+.+.+.+. .+|+..|.+.+++.++..++.+++.+
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 55666666677777889999999999999999999999999999999999988 49999999888887777666665555
Q ss_pred CC
Q 009862 499 ET 500 (523)
Q Consensus 499 Et 500 (523)
+.
T Consensus 221 ~~ 222 (465)
T TIGR00894 221 DD 222 (465)
T ss_pred CC
Confidence 43
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=121.06 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=115.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSES--ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL 394 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~--~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l 394 (523)
....+.+..|.+.++++. .+.+... ..........++..++.+++|+++||+|||++++++.++++++.+++
T Consensus 37 d~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 37 DFYVYSFCSLYFAHIFFP------SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHhCC------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 355566666767666431 0122211 12222334455666999999999999999999999999998888877
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML---- 470 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~---- 470 (523)
++.+++. ... ......+++..++.++...+..+....+++|.+|++.|++..++.......|.++++.+.+.+.
T Consensus 111 ~~~~~~~-~~~-~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 188 (432)
T PRK10406 111 ACLPGYE-TIG-TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLE 188 (432)
T ss_pred hhcCCch-hHH-HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6654432 000 0112234445555555555666777788899999999999999888777788777776655543
Q ss_pred ----HhhCchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 471 ----SSIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 471 ----~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
..+||+..|++.++.+++. ++....+||++.
T Consensus 189 ~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~ 223 (432)
T PRK10406 189 DAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ 223 (432)
T ss_pred HHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence 2579999998766655544 333445677643
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=121.28 Aligned_cols=171 Identities=12% Similarity=0.037 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhCCh
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISA-----FTTFLMLPCIGVAMKLMDVAGRR 377 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~-----i~~l~~lig~~l~g~LsDr~GRR 377 (523)
....+++..+..+.....+.+..|.+.++++. +..+...+... ...+...++.++.|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFP---------AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 34444444444444567788888988887543 33232222211 12233357889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 378 KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 378 ~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
++++.+.++.+++.+++.+.+++.... .. ....+++..++.++......+....+++|++|++.|++++++.....++
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIG-LA-APLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHH-HH-HHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence 999999998888888777654433000 00 0012233333444333333444456789999999999999999988888
Q ss_pred HHHHHHHHHHHHH--------HhhCchhHHHHHHH
Q 009862 458 CDIIVTYTLPVML--------SSIGLAGAFGVYAV 484 (523)
Q Consensus 458 G~iig~~l~~~l~--------~~~G~~~~f~i~~i 484 (523)
|..+++.+.+.+. ..+||++.|++.++
T Consensus 165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8888777776653 46799988876443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=117.93 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=97.9
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
.....+.|.++.+ ++|++. ....++..+..++.+++.++.++++||+|||+.+.++.++.++..+.+....
T Consensus 255 ~~~~~~~~~~~~~--------~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (405)
T TIGR00891 255 HPIQDLLPTYLKA--------DLGLSP-HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG 325 (405)
T ss_pred hhhhhhhHHHHHH--------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC
Confidence 4556677888765 245555 4555566678889999999999999999999988877665533322221110
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-chh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG-LAG 477 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G-~~~ 477 (523)
. ..+ .+.+..++..++..+..++...+++|.+|++.|++++|+.+...++|..++|.+.+.+.+..| +..
T Consensus 326 ~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 326 A--------NVA-VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred C--------chH-HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 0 111 122221222233333444555677999999999999999999999999999999999999988 544
Q ss_pred HH
Q 009862 478 AF 479 (523)
Q Consensus 478 ~f 479 (523)
.+
T Consensus 397 ~~ 398 (405)
T TIGR00891 397 AL 398 (405)
T ss_pred hH
Confidence 43
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-10 Score=116.85 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=108.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+..+..|.|.++.+.+. + .......+..++.+++.++.+++.||+|||+.+..+.++.+++.+++...
T Consensus 232 ~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T PRK05122 232 FGTIATFITLYYAARGW---------D---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA 299 (399)
T ss_pred HHHHHHHHHHHHHHccc---------c---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777765432 1 22233456677788899999999999999998887777666665554432
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+. +..++..++++.+++ ...+.....+.|.+|++.|++++++.+....+|..+++.+.+.+.+..|++.
T Consensus 300 ~~~---------~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 369 (399)
T PRK05122 300 PSP---------WMALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPS 369 (399)
T ss_pred ccH---------HHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 221 122222222222222 2233333445688999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.+.+.++++++..++.++ +++.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (399)
T PRK05122 370 IFLAAALAALLGLALTWL-LYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-hccccc
Confidence 888877777766555544 444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=118.99 Aligned_cols=159 Identities=9% Similarity=0.067 Sum_probs=106.6
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.+.+..|.|.++++ .+|++. ........+..++.+++.++.++++||++||++++....+.++.++++..
T Consensus 220 ~~~~~~~~~p~~l~~--------~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~ 290 (394)
T PRK03699 220 AQLTFISWVPEYAQK--------KFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN 290 (394)
T ss_pred HHHHHHHHHHHHHHH--------HcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 456778899999965 245555 44555666777888999999999999999999888766655554443322
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.. ...+.. +..+++..+..+....+..+..|. .++...++...+..+|.+++|.+.+++.+..|++
T Consensus 291 ~~~~~---------~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 291 TDDPS---------HLLYAI-LGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred cCCch---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 11111 112222 222222223333333445566654 4677888998999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhe
Q 009862 477 GAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~ 495 (523)
..+++.+++++++.+.+.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 360 AALLTANGLYAVVFVMCIL 378 (394)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 8888777777666554433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=125.38 Aligned_cols=140 Identities=17% Similarity=0.093 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....+..++..++.+++.++.|+++||+|||++++++.++.+++.++..+..++. .+++..++.++...+
T Consensus 127 ~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~r~l~G~~~~~ 196 (505)
T TIGR00898 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT----------VFLVFRLLVGMGIGG 196 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhhccc
Confidence 4566777888999999999999999999999999999888888877776554443 444555555566666
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
..++..+++.|++|.+.|+.+.++..+...+|.++++.+...+.+ |++.+++.++.+++..++. +++||+
T Consensus 197 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 677777888999999999999999988888998888887765544 8888888877766665554 567886
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=119.15 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH-HHHHHHHHH
Q 009862 311 ILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL-LTTIPVLIV 389 (523)
Q Consensus 311 ~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll-l~~~~l~~i 389 (523)
+++...+++.+..|+|.++++.+ .+++. ...........++.+++.++.++++||++||+.. +...++.++
T Consensus 251 ~~~~~~~~~~~~~~~p~~l~~~~-------~~~s~-~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~ 322 (412)
T TIGR02332 251 YFCLTNTLSAINIWTPQILQSFN-------QGSSN-IMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAA 322 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------CCCcH-HHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHH
Confidence 33444457788999999998742 23333 4455567788888999999999999999977643 333333332
Q ss_pred HHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 390 SLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVM 469 (523)
Q Consensus 390 ~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l 469 (523)
.+ ++... . .. ....++.+.+ .++......++.+....|.+|++.|++++|+++...++|++++|.+.+.+
T Consensus 323 ~~-~~~~~--~--~~----~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i 392 (412)
T TIGR02332 323 GW-LLASA--T--DH----NLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL 392 (412)
T ss_pred HH-HHHHh--c--CC----HHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 22 21111 1 01 0111111111 11111122233445557889999999999999999999999999999999
Q ss_pred HHhhC-chhHHHHHHHH
Q 009862 470 LSSIG-LAGAFGVYAVV 485 (523)
Q Consensus 470 ~~~~G-~~~~f~i~~i~ 485 (523)
.+..| |...+++.+++
T Consensus 393 ~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 393 KDATGSFNSGLWFVAAL 409 (412)
T ss_pred cccCCCCchhHHHHHHH
Confidence 99875 77776655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-10 Score=113.08 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=124.2
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRK-LLLTTIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~-lll~~~~l~~i~~l~l~ 395 (523)
..+....+.|.++++. ++.+. ........+..++.+++.++.++++||+|||+ .+..+.++..++.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 190 GYYGLLTYLPLYLQEV--------LGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHHHHHHHHHh--------cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4567777888887763 23434 55666777888999999999999999999999 88888888777777665
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
...+. .......++.++......+....++.|.+|++.|++.+++.+...+++..+++.+.+.+.+..++
T Consensus 261 ~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~ 330 (352)
T cd06174 261 LAPSL----------ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330 (352)
T ss_pred HhccH----------HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 43321 13333444444555555677778889999999999999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHHHHhhe
Q 009862 476 AGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~~~ 495 (523)
+..+.+.+++.++..++.++
T Consensus 331 ~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 331 GGVFLILAALALLAALLLLL 350 (352)
T ss_pred chHHHHHHHHHHHHHHHhee
Confidence 98888888888777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-10 Score=115.91 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=109.2
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+..+..|.|.++++.+. + ...+......++.+++.++.+++.||+|||+.+..+..+.+++.+++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 299 (392)
T PRK12382 232 FAVIGTFVSLYFASKGW---------A---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA 299 (392)
T ss_pred HhHHHHHHHHHHHhcCC---------c---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc
Confidence 44556777777776443 1 22334445667778899999999999999999888777766665544432
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+. +...+...+...+.+ ...+.....+.+.+|++.|+++.|+.++...+|..+++.+.+.+.+..||+.
T Consensus 300 ~~~---------~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~ 369 (392)
T PRK12382 300 PTA---------WVALAGAALTGAGCS-LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPS 369 (392)
T ss_pred ccH---------HHHHHHHHHHHHHHH-hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 211 112222222222222 2233344556788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhee
Q 009862 478 AFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~ 496 (523)
.|.+.+++.++..++..++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 370 VFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9988887777766665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=118.98 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcc
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAY 427 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 427 (523)
....+..+..++.+++.+++++++||+|||+++.++.++.+++.+.+.+... ..+..++ ..++.++.....
T Consensus 258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~g~~~~~~ 328 (437)
T TIGR00792 258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS--------NLPLILV-LIILAGFGQNFV 328 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch--------hHHHHHH-HHHHHHHHHHHH
Confidence 3344555667888999999999999999999998887777666554433210 1111222 222222222333
Q ss_pred ccccceeeecccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh--------------HHHHHHHHH
Q 009862 428 GPIPNILCAEIFP-------TKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG--------------AFGVYAVVC 486 (523)
Q Consensus 428 ~~i~~~~~aElfP-------~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~--------------~f~i~~i~~ 486 (523)
.+..+++.+|..+ .+.+|+..|+.+++..+|..+++.+.+.+.+..|+.. .+.+..+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~ 408 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALF 408 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4555566677654 5678999999999999999999999999998876531 233444444
Q ss_pred HHHHHHhhe-eccCCCCCCHHHHHHHH
Q 009862 487 FISWVFVFL-RVPETKGMPLEVITEFF 512 (523)
Q Consensus 487 ~i~~v~~~~-~lpEtk~~~le~i~~~~ 512 (523)
.++.++... +.|.++.+ .+++.+.+
T Consensus 409 ~~~~~~~~~~~y~l~~~~-~~~i~~~l 434 (437)
T TIGR00792 409 LLLAAIIIGRFYKLTEKK-HAEIVEEL 434 (437)
T ss_pred HHHHHHHHHHHeeCcHHH-HHHHHHHH
Confidence 444444443 56666443 33444443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=121.31 Aligned_cols=157 Identities=15% Similarity=0.042 Sum_probs=89.4
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChH-------HHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRK-------LLLTTIPVLIVS 390 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~-------lll~~~~l~~i~ 390 (523)
.+.+..|.|.++.+ .+|++. ..+.....+..++.+++.+++|+++||++||+ ++.+..++.+++
T Consensus 268 ~~~~~~~~p~~l~~--------~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~ 338 (476)
T PLN00028 268 ELTMDNIIAEYFYD--------RFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVF 338 (476)
T ss_pred HHHHHhHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 34566778888765 245554 45566777888999999999999999998762 222222222222
Q ss_pred HHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 391 LIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML 470 (523)
Q Consensus 391 ~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~ 470 (523)
++++... . +.+..++.++++..+...+ .+..+.++.++.| +.|+++.|+.+..+++|+++++.+.+ ..
T Consensus 339 ~~~~~~~------~---~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~ 406 (476)
T PLN00028 339 CIWLGRA------N---SLGAAIVVMILFSIFVQAA-CGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TG 406 (476)
T ss_pred HHHhccc------c---hHHHHHHHHHHHHHHHHHh-hhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hc
Confidence 2211111 1 1111222222222222222 2233345566654 68999999988877777777776543 11
Q ss_pred HhhCchhHHHHHHHHHHHHHHHhhe
Q 009862 471 SSIGLAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 471 ~~~G~~~~f~i~~i~~~i~~v~~~~ 495 (523)
...+|...|++.+++.++++++.++
T Consensus 407 ~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 407 SSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred CCccHhhHHHHHHHHHHHHHHHHHh
Confidence 2235777887777776666555544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-10 Score=118.50 Aligned_cols=186 Identities=12% Similarity=0.128 Sum_probs=127.1
Q ss_pred HHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--HHHHHHH
Q 009862 307 VGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR--KLLLTTI 384 (523)
Q Consensus 307 ~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR--~lll~~~ 384 (523)
+++..+....+++.+......|..+ .+|++. .....+..+..+..++|+++++++.||+|.| +++++++
T Consensus 286 fLia~~l~~dg~~ti~~~~~i~a~~--------~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 286 FLIAYFLYSDGVNTIISFAGIYATE--------VLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL 356 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------hcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 3334444445677777777777765 466666 4566666788899999999999999999988 7777666
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHH
Q 009862 385 PVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTY 464 (523)
Q Consensus 385 ~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~ 464 (523)
++..+..+...+..... .....+.+ .+.++.++.+.+.++..+...++.+|+.|+...+..+|++.+..+..++++|.
T Consensus 357 ~~~~~i~~~g~~G~~~~-~~g~~~~~-~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 357 ILWIIIPLYGLFGFWPS-FFGLKSPW-EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHHHHHhhhc-ccCcccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 65533333222100000 00111122 24444445566666777778888899999999999999999999999999999
Q ss_pred HHHHHHHhhC-chhHHHHHHHHHHHHHHHhheeccCCCCCC
Q 009862 465 TLPVMLSSIG-LAGAFGVYAVVCFISWVFVFLRVPETKGMP 504 (523)
Q Consensus 465 l~~~l~~~~G-~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~ 504 (523)
+.+.+.+..| .+..+....++.++..+ ++++++..|++.
T Consensus 435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~-ll~~v~~~~g~~ 474 (477)
T PF11700_consen 435 LFGLITDATGSQRYGFLFLLVLFLIGLI-LLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHH-HHhhccchhhhh
Confidence 9999999987 55555555555544444 445677777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-10 Score=116.55 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+..++.|+..|+..+ -..+.+..|.+.++ +|++.......+..++..+++++.++.|+++||+|-|+++
T Consensus 27 ~~~~~lC~fGF~~e~--R~n~s~a~p~L~~e---------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL 95 (511)
T TIGR00806 27 VLVLYLCFYGFMAQF--RPGESFITPYLLTV---------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL 95 (511)
T ss_pred HHHHHHHHHHHHHHh--hchHHHHHHHHHHH---------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 455556666666555 24455566666665 5555544366777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
.++.+..+++.+++.+...+. .+.++.++.+.+.++.. ..+.++...+|++.|+++.|+++....+|.+
T Consensus 96 ~l~~l~Wsl~t~L~~fa~Sl~----------~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~ 164 (511)
T TIGR00806 96 VLQALSFVCVWLLLLLGTSVW----------HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF 164 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888887765443 45555555555554444 5567789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCchhHHHH--HHHHHHHHHHHhheeccCC
Q 009862 461 IVTYTLPVMLSSIGLAGAFGV--YAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 461 ig~~l~~~l~~~~G~~~~f~i--~~i~~~i~~v~~~~~lpEt 500 (523)
+++.+.+. +..+||+....+ +...+.+++++..+++|..
T Consensus 165 Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 165 LSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999 567788875443 3334445555556667743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-10 Score=117.14 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....++...+.+...++.+++|+++||+|||++++++.++.+++.+++.+..+ .++..++.+.....
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~-------------~~~~r~l~G~~~a~ 104 (393)
T PRK11195 38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH-------------PLLAYGLVGIGAAA 104 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 45667777888999999999999999999999999998888776655433211 12233445556666
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
..|...+++.|++|++.|+++.++..+...++.+++|.+++.+.+.. +...+.+.+.+.+ ..++..+++||.+
T Consensus 105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~-~~~~~~~~l~~~~ 177 (393)
T PRK11195 105 YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYL-LAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHhcCCCCc
Confidence 77777788899999999999999999999999999999999998864 5444444433332 3334445677653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=132.87 Aligned_cols=147 Identities=14% Similarity=0.007 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....+..+++.+..+++.+++|+++||+|||+++.....+.+++.+...+.... .....++++.++.++....
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-------NSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHh
Confidence 345566667888889999999999999999997644222222221111111000 0112445555566666667
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+.|...+++.+++|.+.|+.++|+.++...+|.+++|.+++++....+|+..| +..++..+.++++.+++|+++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 77888888999999999999999999999999999999999999999998777 444444444444555566553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=117.80 Aligned_cols=166 Identities=10% Similarity=-0.021 Sum_probs=104.4
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS-AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~-~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.....+.+.++.+ .+|++.. ...... .+..++.+++.+++|+++||+|||+.++++.++.+++.+++...
T Consensus 239 ~~~~~~~~~~l~~--------~~G~s~~-~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 239 AFAMSLTTTFLIR--------GVGFDAG-EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHH--------hcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666543 2455553 344443 45567889999999999999999887776555444443322211
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.. .. .+.+.....+++...+++.+..+ .+++..++.|.+.+++.+++.+....+|.++++.+.|.+.+.+||..
T Consensus 310 ~~---~~--~~~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~ 383 (491)
T PRK11010 310 SI---TD--KNLYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPT 383 (491)
T ss_pred Hh---cc--ccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 11 00 01111122222222222222222 24566788999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhheeccCC
Q 009862 478 AFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.|.+.++++++..++..+ ++++
T Consensus 384 ~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhc
Confidence 787777777666555544 3443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=122.84 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....+..+++.++.++|.+++|.++||+|||+++++++++.+++.++.++..++. .++++.++.+++..+
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~----------~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW----------MFLIFRFLSGFFGSG 187 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHhhccc
Confidence 4566777888999999999999999999999999999999999998888877776 778888888888888
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
...+.+.+++|+++++.|+.+..+ ..+.+.++.+++.+.+++.. +|++.+++..+..++..++ +++.||++
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 888888999999999999999999 88889999999998888887 8999988888887776666 55566763
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-10 Score=115.48 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.++..++..++. ..+...+..++|.++++.|. +. ....++.+...++..++.++.|+++||+|||+++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~lp~~~~~~~~---------s~-~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~ 74 (381)
T PRK03633 6 RPVLLLLCGLLLL-TLAIAVLNTLVPLWLAQEHL---------PT-WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY 74 (381)
T ss_pred HHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444443333 33456777889999988554 33 6777888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDI 460 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~i 460 (523)
..+.++.+++.+.+.+..++. .+++..++.++......+.....+.+..|.+.|++++++......+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (381)
T PRK03633 75 YLASLIFAAGCAGLGLMVGFW----------SWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV 144 (381)
T ss_pred HHHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 998888887777665544333 2333334433333333344334446778888999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 009862 461 IVTYTLPVMLSSI 473 (523)
Q Consensus 461 ig~~l~~~l~~~~ 473 (523)
+++.+.+.+.+..
T Consensus 145 ~g~~~~~~l~~~~ 157 (381)
T PRK03633 145 LGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHhcccccc
Confidence 9999998887653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-10 Score=117.98 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccccccee
Q 009862 355 FTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNIL 434 (523)
Q Consensus 355 i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 434 (523)
+..++..++.++.|+++||+|||++++++.++.+++.+++.+.+++. ... ......+++..++.++...+..+....+
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 149 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFS-TIG-WWAPVLLVTLRAIQGFAVGGEWGGAALL 149 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHH-HHH-HHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 34456778889999999999999999999999988888877655543 100 1111223444455555555555555678
Q ss_pred eecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 435 CAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS--------SIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 435 ~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~--------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
++|.+|++.|+...+.......+|.+++..+...+.. .+||+..|++.++..++ .++....+||++
T Consensus 150 ~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 150 AVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 8999999999999999988888888888777666553 46899888876665443 333334466664
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-10 Score=116.64 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPI 430 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 430 (523)
.+..+..++.+++.++.++++||+|||+++..+.++.+++.+.+...... +. +++..++.+++.....+.
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~g~~~~~~~~~ 331 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP---------LQ-LGILRFLLGAADGALLPA 331 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH---------HH-HHHHHHHHHhhhHhhHHH
Confidence 33445567778888899999999999999888777666555444322211 11 222222222233333344
Q ss_pred cceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 431 PNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 431 ~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
...++.+..|.+.|++.+++.+.+..+|..++|.+.+.+.+..|++..|.+.+++.++..++.++..+
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888999999999999999999999999999999999999998888888777776655443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-09 Score=111.19 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=108.4
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+......|.|.++++.|. +. ........+..+..+++.++++++.||+|+|++++++.++.++..+.+.+
T Consensus 220 ~~~~~~~~~~~~l~~~g~---------s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 220 AHAAYYGFSAIYWQAAGI---------SA-SATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHHHHHHHHHHHHHHCCC---------CH-hHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 355666788888877544 44 44455566788889999999999999999999999888888887776655
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCc
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICA-MAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~-~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
..+.. ..+...++....++... +....++.+. |.+.|+++.++++ ....+|.++++.+.|.+.+.+|.
T Consensus 290 ~~~~~---------~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 290 IEAFP---------LIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred HhhHH---------HHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 44332 22333333333443333 3344566777 9999999999986 45679999999999999999985
Q ss_pred hhHHHHHHHHHHHHHH
Q 009862 476 AGAFGVYAVVCFISWV 491 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v 491 (523)
..|++.+++.++..+
T Consensus 359 -~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 359 -GTFVFMAIIAAAAFF 373 (382)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 566666666655433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=114.33 Aligned_cols=165 Identities=8% Similarity=-0.007 Sum_probs=114.4
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
........|.+.++++ ++. ....++.+...++.+++.++.+++.||+|||++++++.++++++.+++...
T Consensus 19 ~~~~~~l~~~~~~~~~---------~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~ 88 (410)
T TIGR00885 19 NDITNPMVPQFQQAFT---------LTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA 88 (410)
T ss_pred HHhHHHHHHHHHHHhC---------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777766644 444 567778889999999999999999999999999999998888877664332
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS----- 472 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~----- 472 (523)
.... .+..++...++.++......+....++.++.|++.|++.+++.+.+..+|..+++.+.+.+...
T Consensus 89 ~~~~-------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 89 AEIM-------NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred Hhhc-------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1110 1112333333333333333344445667888999999999999999999999999998877532
Q ss_pred ---------------------hCchhHHHHHHHHHHHHHHHhh-eeccC
Q 009862 473 ---------------------IGLAGAFGVYAVVCFISWVFVF-LRVPE 499 (523)
Q Consensus 473 ---------------------~G~~~~f~i~~i~~~i~~v~~~-~~lpE 499 (523)
.+|+.+|.+.+++.++..++.. ...|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3588888887776666554443 33565
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.7e-11 Score=118.25 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
..+..+.+.+.+..+++++.+|.++||+|||+++++|++..+++.++.+...++. .++...+..+++..-
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~----------afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFA----------AFVLARFLGGIFKGN 137 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhccCc
Confidence 4566777888999999999999999999999999999999988888777665543 344445666666555
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCchhHHH---HHHHHHHHHHHHhheeccCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS---SIGLAGAFG---VYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~---~~G~~~~f~---i~~i~~~i~~v~~~~~lpEt 500 (523)
.+. ..++++|+++.+.|+.+++.++..+.+|.++||.+++++.. ..|..+.++ +..+.......+..+++|||
T Consensus 138 l~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 138 LSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred hHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 444 45788999999999999999999999999999999999987 444333222 12222222234456678998
Q ss_pred C
Q 009862 501 K 501 (523)
Q Consensus 501 k 501 (523)
-
T Consensus 217 L 217 (451)
T KOG2615|consen 217 L 217 (451)
T ss_pred c
Confidence 3
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.6e-10 Score=114.01 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=98.8
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009862 291 WAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKL 370 (523)
Q Consensus 291 ~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~L 370 (523)
++.+++++..+..+..++..++. ..+++.+..|.|.+..+.|. +. ........+..++.+++.++.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~---------~~-~~~~~~~~~~~~~~~~~~~~~~~l 308 (398)
T TIGR00895 240 FKALFQGKTARITVLLWLLYFML-LVGVYFLTNWLPKLMVELGF---------SL-SLAATGGALFNFGGVIGSIIFGWL 308 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444344444444333333 33466777888877766443 33 455566677888999999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHH
Q 009862 371 MDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAI 450 (523)
Q Consensus 371 sDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi 450 (523)
+||+|||++++... +.+++.+++..... ..+...+.. ++.+++.....+..+.+++|.+|++.|++++|+
T Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 378 (398)
T TIGR00895 309 ADRLGPRVTALLLL-LGAVFAVLVGSTLF--------SPTLLLLLG-AIAGFFVNGGQSGLYALMALFYPTAIRATGVGW 378 (398)
T ss_pred HhhcchHHHHHHHH-HHHHHHHHHHHHhh--------CHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999995544333 33333332222110 011122222 223333333445556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009862 451 CAMAYWICDIIVTYTLPVM 469 (523)
Q Consensus 451 ~~~~~~lG~iig~~l~~~l 469 (523)
.+.+..+|.+++|.+.+++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999998865
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=115.58 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 429 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (523)
++...+......++....+.+.|++|||..+..+.++..++++++++..... .. ++..++..+..++...++..
T Consensus 353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~ 426 (521)
T KOG0255|consen 353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL-GG-----WLHWILPLLGKFFIGSAFNL 426 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc-hh-----HHHHHHHHHHHHHHHHHHHH
Confidence 3444455557888888889999999999999999999988888887655433 10 12233333333444444444
Q ss_pred ccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHH
Q 009862 430 IPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVIT 509 (523)
Q Consensus 430 i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~ 509 (523)
+ +.+.+|++|+.+|.++.+.+++..+++++++|.+...... ......+.+++.++.+.++++.+++|||+++.+.+..
T Consensus 427 ~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~ 504 (521)
T KOG0255|consen 427 I-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL 504 (521)
T ss_pred H-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence 4 6788999999999999999999999999999988655444 3222333335667777777777889999999876544
Q ss_pred HHHh
Q 009862 510 EFFA 513 (523)
Q Consensus 510 ~~~~ 513 (523)
+..+
T Consensus 505 ~~~~ 508 (521)
T KOG0255|consen 505 LDAE 508 (521)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=112.76 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=103.6
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLIS-AFTTFLMLPCIGVAMKLMDVAGRRKLLL-TTIPVLIVSLIILV 395 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~-~i~~l~~lig~~l~g~LsDr~GRR~lll-~~~~l~~i~~l~l~ 395 (523)
...+..++|.++.+ ++|++.. ...+.. ....+..+++.+++++ +||+|||+.++ .+.++.++..+++.
T Consensus 31 ~~~~~p~~~~~l~~--------~~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 31 GALQTPTLSIFLTD--------EVHARPA-MVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHh--------hcCCCHH-HHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 44566777777654 4566564 444443 3444456666666666 99999988654 44444444444443
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRG--ICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg--~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+...+. .+++...+.........+....+..+..+.+.|. ...++.++...+|.+++|.+.+.+.+.+
T Consensus 101 ~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~ 170 (393)
T PRK15011 101 WNRNYF----------VLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF 170 (393)
T ss_pred HhhHHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 333222 2222222222333344555555556666655443 3447778888999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
||+..|++.++.+++.++++++++||.+.
T Consensus 171 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 171 SFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 99999988888887777777777787643
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=111.54 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=90.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGR-RKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~lll~~~~l~~i~~l~l~~ 396 (523)
.+.+..|.|.++.+ .+|++. ........+..++.+++.++.++++||+.+ |+..+. ....+.+.+.+..
T Consensus 232 ~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~ 301 (379)
T TIGR00881 232 RTGILDWSPLYLTQ--------EKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLV 301 (379)
T ss_pred HHHHHHHHHHHHHH--------HhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHH
Confidence 45677788888865 244444 455566667888899999999999998643 332222 1111111111111
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
.. .......+ ..+...+..+.+..+..+..+.+..|.+|++.|+++.|+.+....+|..+++.+.+.+.+..||+
T Consensus 302 ~~----~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 302 YW----LNPAANPL-MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred Hh----cCcchhHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 11 00001111 11222222222333333444456789999999999999999999999999999999999999987
Q ss_pred hH
Q 009862 477 GA 478 (523)
Q Consensus 477 ~~ 478 (523)
..
T Consensus 377 ~~ 378 (379)
T TIGR00881 377 GA 378 (379)
T ss_pred cc
Confidence 54
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-09 Score=109.45 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=105.9
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
.....|+|.++++.|. +. ........+..++.+++.++.++++||+|||+++..+..+.+++.+.+. .
T Consensus 217 ~~~~~~lp~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~ 284 (381)
T PRK03633 217 GSLYGLMPLYLNHQGM---------SD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S 284 (381)
T ss_pred HHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h
Confidence 3445678888877444 33 3444556677788899999999999999999988877766665544332 1
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
... ......++ ++......|....++.|..|++.++...+..+..+.+|.+++|.+.+.+.+..++.+.
T Consensus 285 ~~~----------~~~~~~l~-g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~ 353 (381)
T PRK03633 285 QAA----------MAPALFIL-GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL 353 (381)
T ss_pred hHH----------HHHHHHHH-HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 100 11111112 2222233455556667888888888888888888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhe
Q 009862 479 FGVYAVVCFISWVFVFL 495 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~ 495 (523)
|.+.+.+.++..+..+.
T Consensus 354 f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 354 FIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88877777655544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=128.25 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccc
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYG 428 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 428 (523)
..++.+++.++.+++.+++|+++||+|||++++++.++.+++.++..+..... ....+++..++.++......
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~ 121 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG-------WFWLAFAVTFLLGAQSAIYS 121 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHHhhc
Confidence 45666778888899999999999999999999988766555554443322111 11234444445555556666
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hC-chhHHHHHHHHHHHHHHHhheeccC
Q 009862 429 PIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS--------IG-LAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 429 ~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~--------~G-~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
+...++++|++|.+.|++++++..++..+|.++++.+++++... ++ +.+.+.+..++.++++++..+++|+
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK 201 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence 77778889999999999999999999999999999999998876 32 3334434444444444444555676
Q ss_pred CC
Q 009862 500 TK 501 (523)
Q Consensus 500 tk 501 (523)
+.
T Consensus 202 ~~ 203 (1146)
T PRK08633 202 VP 203 (1146)
T ss_pred CC
Confidence 53
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-09 Score=107.70 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=110.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.+....|.-.++++ ..|++. +...+....+.++.+++..+.|+++|| +.|+.+.....+.++.++.+.+
T Consensus 226 g~F~~ftYi~P~L~~--------v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~ 295 (394)
T COG2814 226 GHFALYTYIRPFLES--------VAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF 295 (394)
T ss_pred chhhhHHhHHHHHHH--------ccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence 455666666666655 244444 566777789999999999999999999 8888888777777777666554
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccc-cceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPI-PNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i-~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
..... +..++.+.+ ..+.....+. .....++ .-++.+..+.++....+++|..+|..+++.+.+.+|+
T Consensus 296 ~~~~~--------~~~~~~~~~--wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~ 364 (394)
T COG2814 296 TGASP--------ALALALLFL--WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY 364 (394)
T ss_pred hcchH--------HHHHHHHHH--HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 33322 122222222 2222222222 1222344 3457899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhheec
Q 009862 476 AGAFGVYAVVCFISWVFVFLRV 497 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~~~~l 497 (523)
....++-+++.+++.++..+..
T Consensus 365 ~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 365 AATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777766665533
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=110.03 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=116.5
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIY 419 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~ 419 (523)
++++|. .+..++..+..+...+..++.|++.||+|-|+..+++.+++.+-++.+.+..... ..+ .++++.++
T Consensus 43 ~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~------~~~-~ll~~gll 114 (417)
T COG2223 43 DFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP------STW-QLLVIGLL 114 (417)
T ss_pred ccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC------chH-HHHHHHHH
Confidence 466666 5667777788899999999999999999999999999888887777776654433 011 22222223
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHHHHHhhee
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG---LAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G---~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
+....+...+...+++..||++.+|+++|+.. .+|+|..+...+.|.++...| |+.+..++.+..++.++..++.
T Consensus 115 -~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~ 192 (417)
T COG2223 115 -LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLG 192 (417)
T ss_pred -HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455567799999999999999988 999999999999999999999 8999999998888888877776
Q ss_pred ccC
Q 009862 497 VPE 499 (523)
Q Consensus 497 lpE 499 (523)
..+
T Consensus 193 ~~d 195 (417)
T COG2223 193 MND 195 (417)
T ss_pred hCC
Confidence 543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=108.67 Aligned_cols=134 Identities=11% Similarity=-0.025 Sum_probs=95.6
Q ss_pred hchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009862 323 YYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL 402 (523)
Q Consensus 323 ~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~ 402 (523)
.+.|.++++ .++.+. ........+..++.+++.++.+++.||++||+++..+..+.+++++.+.+...
T Consensus 232 ~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (365)
T TIGR00900 232 ALFPYVQSK--------YLGRGS-THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP--- 299 (365)
T ss_pred HHhHHHHHH--------HhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch---
Confidence 677888775 134444 45556666778889999999999999999999888776666665555443221
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 403 ISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 403 ~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
+.+...+. .++.++......+....++.|.+|++.|+++.|+.+...+++..+++.+.+.+.+.+|
T Consensus 300 -----~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 300 -----NFPLFLVL-WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred -----hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 01122222 2333333334455556777899999999999999999999999999999999988654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=109.92 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=134.6
Q ss_pred cHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 290 SWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMK 369 (523)
Q Consensus 290 ~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~ 369 (523)
..+.++++ +.+++.+++++ ..|.++-++..|+|.|+++ +++++. ..+........+...+..+++|+
T Consensus 210 ~~~~v~~~---~~~W~lsllY~-~tFG~Fvgfs~~l~~~~~~--------~fg~~~-~~Ag~~a~~f~~~g~l~Rp~GG~ 276 (417)
T COG2223 210 QLKAVFSN---KDTWLLSLLYF-ATFGGFVGFSAYLPMYLVT--------QFGLSP-VTAGLIAFLFPLIGALARPLGGW 276 (417)
T ss_pred HHHHHhcC---cchHHHHHHHH-HHHHHHHHHHHHHHHHHHH--------hcCCCh-hhHHHHHHHHHHHHHHHHhccch
Confidence 35555543 34444444443 3455677889999999987 677777 45556667788888899999999
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHH
Q 009862 370 LMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIA 449 (523)
Q Consensus 370 LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~g 449 (523)
|+||+|.++++.+...+++++..++.+..... . .....+..+..++.+..+.+.+.+.+. .+++.+||. .-|...|
T Consensus 277 LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G 352 (417)
T COG2223 277 LSDRIGGRRVTLAVFVGMALAAALLSLFLTGF-G-HGGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTG 352 (417)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHcccccc-c-cCcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHH
Confidence 99999999999988888888887776543221 1 112222333334444455555555554 667888876 5688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHhhee
Q 009862 450 ICAMAYWICDIIVTYTLPVMLSSIG-LAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 450 i~~~~~~lG~iig~~l~~~l~~~~G-~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
+..+++.+|+++-|...+...+..| +...|+++..+.+++.++.+..
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 6667778777777777665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-09 Score=111.83 Aligned_cols=187 Identities=15% Similarity=0.053 Sum_probs=106.1
Q ss_pred cHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 290 SWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMK 369 (523)
Q Consensus 290 ~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~ 369 (523)
.++.+++. +.++..++.. +....+++.+..|+|.|+++ .+|++. ....+...+..++.+++.+++|+
T Consensus 253 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~lp~~l~~--------~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~ 319 (465)
T TIGR00894 253 PIKAIPKS---LPVWAIWFAI-FGHFWLYTILPTYLPTFISW--------VLRVSG-KENGLLSSLPYLFAWLCSIFAGY 319 (465)
T ss_pred CHHHHhcC---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--------HhCcCh-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 35555553 3333333333 33444577888899999876 355555 45556666778889999999999
Q ss_pred HHHhhCChHHHH---HHHHHHHHHH---HHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch
Q 009862 370 LMDVAGRRKLLL---TTIPVLIVSL---IILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV 443 (523)
Q Consensus 370 LsDr~GRR~lll---~~~~l~~i~~---l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~ 443 (523)
++||+++|+... ...+...++. .+..+..... . ...+..+++ .++.+++..+..+..+....|..|. .
T Consensus 320 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~-~ 393 (465)
T TIGR00894 320 LADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL--S--AAFYLTIII-LTLANAVSSGPLAGVLINSLDLAPR-F 393 (465)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--C--CchHHHHHH-HHHHHHHhhhhhhhhhhchhhcChh-H
Confidence 999987542211 0001111111 1111111100 0 011112222 2222222222233333444566665 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHHhhe
Q 009862 444 RGICIAICAMAYWICDIIVTYTLPVMLSSI---GLAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 444 Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~---G~~~~f~i~~i~~~i~~v~~~~ 495 (523)
+|++.++.++.+.++++++|.+.+.+.+.. +|...|.+.++++++..++..+
T Consensus 394 ~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 999999999999999999999999887643 3666777777666666555444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=126.33 Aligned_cols=162 Identities=16% Similarity=0.085 Sum_probs=102.5
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+.+..++|.++.+ .+|++......++.++..++.+++.+++++++||+++|+++.++.++++++++++.+..
T Consensus 249 ~~~~~~~~~~~~~--------~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 249 QLAQANFPAYAKE--------VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHHhhHHHHHH--------HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 4456677777765 34555531556666777888999999999999999999888877777666665554332
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS-IGLAG 477 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~-~G~~~ 477 (523)
+.. ..+++.+++ +++.....+...+++.+.+|++.|++++|+.+++..+|.++++.+.+.+... +++..
T Consensus 321 ~~~---------~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~ 390 (1146)
T PRK08633 321 SLA---------SVLVLFFLF-GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAG 390 (1146)
T ss_pred hHH---------HHHHHHHHH-HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 211 222222223 2333333344456778999999999999999999999998887776655441 23333
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 009862 478 AFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lp 498 (523)
.+++.++++++..++.++.+|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (1146)
T PRK08633 391 LFYLIALVTLIGTLYTLLLLP 411 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 444444444443333333333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-09 Score=110.19 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=104.3
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+.....+.|.++++... ..+.+. ........+..+..+++.+..+++.||+|||+.++++.++.++..++....
T Consensus 231 ~~~~~~~~~~y~~~~~~-----~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~ 304 (396)
T TIGR00882 231 YDVFDQQFANFFTSFFA-----TPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA 304 (396)
T ss_pred HHHHHHHHHHHHHHhcc-----ccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc
Confidence 33444566777665321 112222 233445556677788888999999999999999888777666655543322
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAI-CAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi-~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
.+.. ...+..++...+. .........++.+.+|++.++++.++ .+....+|.++++.+.+++.+..|+.
T Consensus 305 ~~~~---------~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~ 374 (396)
T TIGR00882 305 TTAL---------EVVILKMLHAFEV-PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQ 374 (396)
T ss_pred CChH---------HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 2111 1222222222111 11112223455677888888887776 57789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhe
Q 009862 477 GAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~ 495 (523)
.+|.+.+++.++..++..+
T Consensus 375 ~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 375 GAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998888887777666544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=110.41 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=102.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+..+...+|.+.+++|. +. ....+..++..++..++.++.|+++||+|||++++++.++.+++.+.. ..
T Consensus 16 ~~~~~~~lp~l~~~~~~---------s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~ 84 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGM---------SF-SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA 84 (355)
T ss_pred cccCcccHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh
Confidence 44566778888887554 34 667778889999999999999999999999999988877666554433 22
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--c
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG--L 475 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G--~ 475 (523)
.+.. .+++..++.++......+....++.+.+| +.|++++++.+....+|..+++.+.+.+.+..+ |
T Consensus 85 ~~~~----------~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w 153 (355)
T TIGR00896 85 PGTA----------LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHW 153 (355)
T ss_pred ccHH----------HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 1111 22222323222222223333345678886 579999999999999999999999988877653 7
Q ss_pred hhHHHHHHHHHHH
Q 009862 476 AGAFGVYAVVCFI 488 (523)
Q Consensus 476 ~~~f~i~~i~~~i 488 (523)
+..|.+.++++++
T Consensus 154 ~~~f~~~~~~~~~ 166 (355)
T TIGR00896 154 QQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 7777665554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-09 Score=110.56 Aligned_cols=149 Identities=10% Similarity=-0.015 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
..+++.+.+.+...+ .......+.|.+.++ ++++. ....+....+.++..++.++.|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~~~~~-~~~~~~~~~p~i~~~---------~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l 94 (438)
T PRK10133 26 IPFALLCSLFFLWAV-ANNLNDILLPQFQQA---------FTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 333333333333333 345667778888655 44544 6677777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILVI---SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 381 l~~~~l~~i~~l~l~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
+++.++.+++.+++.. .+++. .+++..++.++......+..+.++.++.|.+.|...+++.+.+..+
T Consensus 95 ~~g~~~~~~~~~l~~~~~~a~~~~----------~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~ 164 (438)
T PRK10133 95 ITGLFLYALGAALFWPAAEIMNYT----------LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 9999888887765431 11221 3333333333333334444445667877777777789999999999
Q ss_pred HHHHHHHHHHHHH
Q 009862 458 CDIIVTYTLPVML 470 (523)
Q Consensus 458 G~iig~~l~~~l~ 470 (523)
|..+++.+.+.+.
T Consensus 165 G~~~g~~~g~~l~ 177 (438)
T PRK10133 165 GAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-10 Score=118.65 Aligned_cols=155 Identities=6% Similarity=0.041 Sum_probs=100.0
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHHHHHH--HHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRRKLLLTT--IPVLIVSLI 392 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~--GRR~lll~~--~~l~~i~~l 392 (523)
+++....|+|.++++.|. +. ....++.++..++.+++.++.++++||. ++|+..++. .++.+++.+
T Consensus 256 ~~~~~~~~l~~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l 325 (455)
T TIGR00892 256 GFFAPIIFLVPYAKDKGV---------DE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL 325 (455)
T ss_pred HccchHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 355667788888876444 34 4555666678888899999999999973 334333322 222222222
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
++....+ .+ .+++..++.++......+....++.|.+|.+.+++++|+++.+..+|.+++|.+.+.+.+.
T Consensus 326 l~~~~~~---------~~-~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 326 LCALAGD---------YT-GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHHhch---------HH-HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 2221111 11 2222222223333333445556678999999999999999999999999999999999988
Q ss_pred hC-chhHHHHHHHHHHHHHH
Q 009862 473 IG-LAGAFGVYAVVCFISWV 491 (523)
Q Consensus 473 ~G-~~~~f~i~~i~~~i~~v 491 (523)
.+ |...|.+.+++++++++
T Consensus 396 ~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 396 TKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred cCCcchHHHHhhHHHHHHHH
Confidence 74 77777777666655544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=113.23 Aligned_cols=180 Identities=15% Similarity=0.127 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----C
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-----G 375 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-----G 375 (523)
|+.+..+++.+.+.. ........+|.++++.|. +. ......+ ...... ++.++++.++||+ |
T Consensus 12 ~~~~~~~~l~~~~gl-~~~~~~~~l~~~l~~~g~---------~~-~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~G 78 (491)
T PRK11010 12 PNSAILLILGFASGL-PLALTSGTLQAWMTVENI---------DL-KTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLG 78 (491)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCC---------CH-HHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCC
Confidence 445555555444433 355666678888887554 22 2333322 222222 6789999999999 9
Q ss_pred ChHH-HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHH
Q 009862 376 RRKL-LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMA 454 (523)
Q Consensus 376 RR~l-ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~ 454 (523)
||+. ++++.+..+++.+.+.+.... .+. ..+....++.+++.....+...++..|++|.+.|+++.++..+.
T Consensus 79 rrr~~ll~~~i~~~~~~~~~a~~~~~------~~l-~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g 151 (491)
T PRK11010 79 RRRGWLLATQLLLLVAIAAMGFLEPG------TQL-RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLG 151 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCc------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 9885 556666665665555442211 111 12232333334444455555667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-hhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 455 YWICDIIVTYTLPVMLS-SIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 455 ~~lG~iig~~l~~~l~~-~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+++|.++++.+...+.+ ..||+..|++.+++.++..+..++ +||+.
T Consensus 152 ~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 152 YRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999988 579999999888777666554443 67763
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=108.78 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 009862 303 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT 382 (523)
Q Consensus 303 ~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~ 382 (523)
+++.+++. ++.+.++.++.+|+|+++++. + +. ........+..+...+..+++|+++||+|+|+++++
T Consensus 254 ~Wllslly-~~tFG~fvg~s~~lp~~~~~~--------~--~~-~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 254 LWLLSLLY-LATFGSFIGFSAGFAMLAKTQ--------F--PD-VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------c--Ch-HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 34444443 334545667888999998762 1 11 222333445567788899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc---------------------
Q 009862 383 TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT--------------------- 441 (523)
Q Consensus 383 ~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~--------------------- 441 (523)
++++++++.+++..... .......+..++.++.+..+.+.+.+++. -+++.+||.
T Consensus 322 ~~i~~~i~~~~~~l~lp---~~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
T PRK15034 322 NFIFMAIFSALLFLTLP---GTGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAV 397 (462)
T ss_pred HHHHHHHHHHHHHHHhc---cccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHH
Confidence 88877766644332221 11111222333333333344444444443 456788874
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHhheec
Q 009862 442 KVRGICIAICAMAYWICDIIVTYTLPVMLSSIG-LAGAFGVYAVVCFISWVFVFLRV 497 (523)
Q Consensus 442 ~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G-~~~~f~i~~i~~~i~~v~~~~~l 497 (523)
+.-|.+.|+..+.+.+|+++.|.+++...+..| +...|+++.+..++|.++.+++.
T Consensus 398 ~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 398 TETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 156788999999999999999999999988876 44567777777777777666543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=109.76 Aligned_cols=163 Identities=18% Similarity=0.084 Sum_probs=107.8
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----CChHHH-HHHHHHHHHHHHH
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-----GRRKLL-LTTIPVLIVSLII 393 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-----GRR~ll-l~~~~l~~i~~l~ 393 (523)
.+..-.|.++++.|+ +. ....+...+ .+...+ .+++|+++||+ |||+.+ +.+.++.++++++
T Consensus 6 ~~~~~~~~~~~~~g~---------s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 6 LVGNTLPYWLRSKNV---------SL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI 73 (356)
T ss_pred hHHhHHHHHHHHcCC---------CH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 445567788887554 44 344444433 333333 88999999998 898874 5555555555544
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+.+... ....+. +..+.+....+.....+...++++|++|++.|+.+.++......+|.++++.+.+.+....
T Consensus 74 l~~~~~------~~~l~~-l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 146 (356)
T TIGR00901 74 LSFLVP------STDLPL-LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE 146 (356)
T ss_pred HHcCCc------chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 443211 111112 2222222233334445555677899999999999999999999999999999999998888
Q ss_pred C--------chhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 474 G--------LAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 474 G--------~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+ |+..|++.+++.++..++.++..||.+
T Consensus 147 g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 147 FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 8 999998888877766655555567753
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=105.11 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=94.8
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFT-TFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~-~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.....+.+.++++.|+ +. +...+...+. .+..+++.++.|++.||+|+|+.+.++.++.++..+.....
T Consensus 225 ~~~~~~~~~~l~~~G~---------s~-~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 294 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGW---------PL-EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQ 294 (390)
T ss_pred HHHHHHhhHHHHhcCC---------CH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777776544 44 3444444444 34667788899999999999998887766553332222211
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT-KVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~-~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
.... ... ..........+...+.+... +....+..+..++ +.+++.+++.+....+|.+++|.+.+.+.+..|+.
T Consensus 295 ~~~~-~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~ 370 (390)
T TIGR02718 295 AAFW-LAP--GIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYA 370 (390)
T ss_pred HHcc-cCC--cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 1111 000 11111111111111222222 2222333455554 88999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHH
Q 009862 477 GAFGVYAVVCFISWV 491 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v 491 (523)
..|.+.+++.++..+
T Consensus 371 ~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 371 GGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=109.32 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=115.5
Q ss_pred hhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----CChH-HHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-----GRRK-LLLTTIPVLI 388 (523)
Q Consensus 315 ~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-----GRR~-lll~~~~l~~ 388 (523)
...+.....-+|.++++.|+ +. ++..++..+... .+..+++|+++||+ |||+ .++++.++++
T Consensus 12 ~~~~~~~~~~~~~~l~~~g~---------~~-~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 12 GLPLALTSGTLQAWMTVEGL---------DI-QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred hhhHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 33456667788999998665 33 455444444333 58889999999999 8775 6777777777
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 389 VSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPV 468 (523)
Q Consensus 389 i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~ 468 (523)
++++.+.+... ..+.+. ++.+.++..++.....+...+++.|++|++.|+++.++..+.+.+|.++++.+...
T Consensus 80 l~~~~l~~~~~------~~~~~~-l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 80 ASIAAMAFCPP------HAALWP-LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHHHHHhcCc------cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66666554321 111122 22222223345555566666788999999999999999999999999999999998
Q ss_pred HHHh-hCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 469 MLSS-IGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 469 l~~~-~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+.+. .||+..|++.+++.++..+. .+++||++
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 8885 59999998888777655443 34566653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-09 Score=110.32 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hhCC
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMD----VAGR 376 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsD----r~GR 376 (523)
++++....+.+..|++ +.....+++.|++.+|. +. ....++..+..+..++..++.|+++| |+||
T Consensus 4 ~~li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~---------~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR 72 (477)
T TIGR01301 4 RKLLRVASVAAGVQFG-WALQLSLLTPYVQELGI---------PH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR 72 (477)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC
Confidence 4455555555666664 66677788888877554 33 66677777888999999999999999 5999
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHhhhcc-c----hhhhH---HHHHHHHHHHHHHHhhccccccceeeecccCcchh--h
Q 009862 377 RKLLLTT-IPVLIVSLIILVISETLQLI-S----PVLKA---GISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVR--G 445 (523)
Q Consensus 377 R~lll~~-~~l~~i~~l~l~~~~~~~~~-~----~~~~~---~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~R--g 445 (523)
|+.++.+ .+..+++++++.+....... . ..... +..++.+.++..+......|. .++++|++|++.| +
T Consensus 73 Rrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~ 151 (477)
T TIGR01301 73 RRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTR 151 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHH
Confidence 9988765 44445554554443322100 0 00011 112222222223333333344 4778999998866 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhh-------------CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 446 ICIAICAMAYWICDIIVTYTLPVM--LSSI-------------GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 446 ~a~gi~~~~~~lG~iig~~l~~~l--~~~~-------------G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.+.++.+.+..+|+++++.+.++. ...+ +.+..|.+-+++.+++.++..+.+||...
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 789999999999999999988765 2222 44567888788888888888888998653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-09 Score=112.76 Aligned_cols=164 Identities=9% Similarity=0.058 Sum_probs=102.1
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.|.+..+.|.+.+++|+ +.. ...++..+... ...+.+++|++.||+|||++++++.++.+++.+++.+.
T Consensus 43 ~y~fsv~s~~L~~~lgl---------s~~-~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 43 MYAFNLISGAMQARYNL---------TQR-DLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHHHHHhCc---------CHH-HHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888776544 443 33333333322 23456678999999999999999999998888877664
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.... . ..+. ..+.+..++.+.......+.....+.++|| +.||+++|+...+..+|+++.+.+...+.. .+|..
T Consensus 112 ~~~~-i--~~s~-~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~ 185 (591)
T PTZ00207 112 FQEV-I--EGSV-VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSA 185 (591)
T ss_pred hccc-c--cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Confidence 2111 0 0111 122222333333333233333345678897 679999999999999999865555444443 35666
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 009862 478 AFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lp 498 (523)
.|++.+++.++..++.+++++
T Consensus 186 ~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 186 YFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 777777777776666655554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=108.50 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=101.2
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
++..+..++|.++++ ++|++. ....+..++..+...++.++.|+++||+|||++++++..+.+++...+..
T Consensus 25 ~~~~~~~~~~~~l~~--------~~g~s~-~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 95 (420)
T PRK09528 25 IWSSWFSFFPIWLHD--------INGLSG-TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI 95 (420)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 345667888888876 345555 56677788999999999999999999999999988765555443322211
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP--TKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP--~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
..... .... .......+.....+.+..... ..+..+.+ .+.++..++.......+|.++++.+.+.+.+ .+
T Consensus 96 ~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~ 168 (420)
T PRK09528 96 YVFAP----LLQY-NILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-IN 168 (420)
T ss_pred HHHHH----HHHH-HHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cC
Confidence 10000 0000 001111111111111111111 11122222 2346677888888899999999999998876 48
Q ss_pred chhHHHHHHHHHHHHHHHhheeccCC
Q 009862 475 LAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
|+..|++.+++++++.++.++..|+.
T Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 169 PQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred chHhHHHHHHHHHHHHHHHhcccccc
Confidence 88888887777766666655544443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=120.41 Aligned_cols=190 Identities=13% Similarity=-0.039 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++.+++.+.+..+.+......+..-+|++-++ +++++ ....++.+.+.++.+++.++.+++.||+|||+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~---------F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~ 100 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERR---------FKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV 100 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh---------hCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceE
Confidence 34444444444444443223334444555544 55556 456667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc---cc-------------------h-----------------h--hhHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQL---IS-------------------P-----------------V--LKAGISTACVII 418 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~---~~-------------------~-----------------~--~~~~~~~i~~~~ 418 (523)
+.+++++++++.+++++...... .. . . ...+..+++..+
T Consensus 101 i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 180 (633)
T TIGR00805 101 IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQL 180 (633)
T ss_pred EEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHH
Confidence 99999999988888766531100 00 0 0 012334455566
Q ss_pred HHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------C-ch
Q 009862 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI---------------------G-LA 476 (523)
Q Consensus 419 ~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~---------------------G-~~ 476 (523)
+.++......++...++.|.+|++.|+..+++.+....+|.++++.+++++.+.+ | |+
T Consensus 181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 6666666777788889999999999999999999999999999999999887643 1 55
Q ss_pred hHHHHHHHHHHHHHHHhheeccCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
..|++.+++.++.++.. +++|++
T Consensus 261 l~Fli~g~l~~l~~v~l-~~~p~~ 283 (633)
T TIGR00805 261 IGFLICGGVALLTSIPF-FFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHHHHHH-HhCccc
Confidence 55666666666655543 345554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-08 Score=106.68 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=111.5
Q ss_pred ccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009862 289 PSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAM 368 (523)
Q Consensus 289 ~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g 368 (523)
..++.+++++..+.+++..++..+. ......+.+++.+.. ++.+ ........+..+..+++.++++
T Consensus 216 ~~~~~~~~nr~~~~l~~~~~~~~~~----~~~~~~~~~y~~~~v--------l~~~--~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 216 DSLRSLFRNRPFRILLLAFFLQWLA----FALMNTFLPYYFTYV--------LGNE--GLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cchhhhcccchHHHHHHHHHHHHhh----hhhhhhHHHHHHHHH--------hcCc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 3466777764444444444333322 333444445555442 2222 2344555577888899999999
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-------c
Q 009862 369 KLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-------T 441 (523)
Q Consensus 369 ~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-------~ 441 (523)
+++||+|+|+++..+.++.+++.+++.+.... ....+++..++.+........+++++.+|+.+ .
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~ 353 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG--------SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR 353 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC
Confidence 99999999999999999888888776655411 11234444444455555566778888899876 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 442 KVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 442 ~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
+..|...|+.++...++..+++.+.+.+++..|+.
T Consensus 354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 44689999999999999999999999998876543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-08 Score=106.13 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
..+.+.......+.+++.++..++++|+|+|+++.++.++.+++.+.+.+..... ...+++..+........
T Consensus 272 l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~--------~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 272 LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS--------VVLIVVALIIAGVGTGI 343 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc--------hHHHHHHHHHHHHHhhc
Confidence 4454555566677777799999999999999999999998888888777654111 12333333444555566
Q ss_pred cccccceeeecccC-----c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch---------------hHHHHHHH
Q 009862 427 YGPIPNILCAEIFP-----T--KVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA---------------GAFGVYAV 484 (523)
Q Consensus 427 ~~~i~~~~~aElfP-----~--~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~---------------~~f~i~~i 484 (523)
..+++|++++|+.. + |.-|...++..++..+|..++..+.++++...|+. ..+.++.+
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa 423 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPA 423 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 77889999888742 3 34477778889999999999999999999876532 23344444
Q ss_pred HHHHHHHHhheeccCCCCCCHHHHHHHHhcccc
Q 009862 485 VCFISWVFVFLRVPETKGMPLEVITEFFAVGAR 517 (523)
Q Consensus 485 ~~~i~~v~~~~~lpEtk~~~le~i~~~~~~~~~ 517 (523)
++.+.+.+...+.|-++. ..++|.+.++++++
T Consensus 424 ~l~l~~~i~~~~y~L~~~-~~~~I~~eL~~r~~ 455 (467)
T COG2211 424 LLLLLAAIIIFFYKLNEK-MHKEIIEELEQRKA 455 (467)
T ss_pred HHHHHHHHHHHhccCCHH-HHHHHHHHHHHHhc
Confidence 444444444445565543 34455555554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=117.43 Aligned_cols=137 Identities=19% Similarity=0.266 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....+++....+...++.++.|+++|.||||..++++.++..+..++.+.+.+.. ..+....+++.. .+
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~---------~~iag~~l~Gvg--aG 146 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN---------TFIAGMVLYGVG--AG 146 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH---------HHHHHHHHHHHh--hH
Confidence 3455666778888999999999999999999999999999999988887665554 122223333222 22
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhh
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~ 494 (523)
...+....++|+.|.+.|..+.++.....-+...+++.+...+....+|||.|+++.++..+..++.+
T Consensus 147 ~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 147 VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 22233445799999999998887766555455555666666555566899999988887766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-09 Score=111.74 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....++.....+..++..+++|.++||+.||++++.+-++.+++.+++.+..... ..+.+ .++++.++.+++...
T Consensus 45 ~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~----~~~~~-~Ll~~~fl~g~~~a~ 119 (524)
T PF05977_consen 45 LMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG----LLSPW-LLLILTFLLGIGSAF 119 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC----cCCHH-HHHHHHHHHHHHHHH
Confidence 4556666777788888999999999999999999998887776655555433222 11112 234444455555666
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWV 491 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v 491 (523)
..|...+++.|+.|.+....+.++.++..++..++||.++|.++..+|...+|.+-++..++..+
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788899999999999999999999999999999999999999988888776665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=105.52 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=102.2
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+...+..++|.++.+ ++|++. ....+...+..+..+++.++.|+++||+|||+.++.+.++.+++...+..
T Consensus 17 ~~~~~~~~~~~~~~~--------~~g~s~-~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 87 (396)
T TIGR00882 17 IMSAYFPFFPIWLHD--------VNGLSK-TDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFI 87 (396)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888765 345555 56667788999999999999999999999999998776655443332221
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..... ......+...++..++.++......+....+..+.- +.++..++.......+|.++++.+.+.+.+ .+|+
T Consensus 88 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~ 162 (396)
T TIGR00882 88 YVFGP--LLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ 162 (396)
T ss_pred HHhhh--HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence 11000 000001111111122222222222333333333332 233446677777888999999999887754 5898
Q ss_pred hHHHHHHHHHHHHHHHhheeccCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
..|++.+++.++..++.++..|+.
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 163 IVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888888777776665555544543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=110.75 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 429 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (523)
.++.++..++.+++.+++|+++|++|||+.++++.+...+..++.+++.+.. .+++..++.++..++...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~----------~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY----------QLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHhccchhhhhh
Confidence 6778899999999999999999999999999999999999988888776554 455555555555555556
Q ss_pred ccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 430 IPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS--IGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 430 i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~--~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+...+++|+.|++.||...++......+|..++ ++.+..... .+|+..+.+..+.+++..+. .+++||+
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 666889999999999999999999988777777 555555554 38988888888888777777 7778987
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=108.18 Aligned_cols=166 Identities=15% Similarity=0.088 Sum_probs=128.7
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIY 419 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~ 419 (523)
++..+.. ...++......+.+++.+..++++||+|-|+++.++.++.+++.++.-++.... .+ .++++.++
T Consensus 67 ~~~ws~~-~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-------~~-~~~~~R~l 137 (466)
T KOG2532|consen 67 EYDWSST-EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-------FY-LLLVLRFL 137 (466)
T ss_pred eecCCHH-HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-------ch-hhHHHHHH
Confidence 5666664 445556678899999999999999999999999999998888877766554433 11 34556666
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchhHHHHHHHHHHHHHHHhheecc
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS-IGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~-~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
.++......|....+.+.+.|++.|++..++......+|.+++-.+.|++.+. +||+.+|.+++++.++..++.+++..
T Consensus 138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666677778889999999999999999999999999999999999998 99999999999999888777666654
Q ss_pred CC----CCCCHHHHHHHHhc
Q 009862 499 ET----KGMPLEVITEFFAV 514 (523)
Q Consensus 499 Et----k~~~le~i~~~~~~ 514 (523)
+. +..+.+|.+...+.
T Consensus 218 d~P~~h~~is~~El~~I~~~ 237 (466)
T KOG2532|consen 218 DSPSKHPNISEKELKYIEKG 237 (466)
T ss_pred CCcccCCCCCHHHHHHHHhc
Confidence 33 33344454444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=108.29 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccc
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYG 428 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 428 (523)
...+..+..+..+++.+++++++||+|||+.+++++++.+++.+.+.+..... ....+..++...+ .++......
T Consensus 268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l-~g~~~~~~~ 342 (473)
T PRK10429 268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA----PHNALLIVIAGIL-LNIGTALFW 342 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHH-HHHHHHHHH
Confidence 33445566678889999999999999999999887776555544433211101 1111222222222 222333334
Q ss_pred cccceeeecccC-----c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 429 PIPNILCAEIFP-----T--KVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 429 ~i~~~~~aElfP-----~--~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
+..+++.+|+.+ + +..|..+|+..++..++..+++.+.+.+++..|+
T Consensus 343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555667788844 3 4456778888999999999999999999987765
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=110.38 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....++.....+.+++..++.|.++||+|+|..++++++++..+.+++++...+. ..++...+.+...++
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~----------~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP----------MLFVARSLQGVGSAF 175 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH----------HHHHHHHHhhhhHHH
Confidence 5667777888999999999999999999999999999999999999998877666 666777777777777
Q ss_pred cccccceeeecccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCC
Q 009862 427 YGPIPNILCAEIFPTKV-RGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMP 504 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~-Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~ 504 (523)
......+++++.||.+. |++++|+.-.+..+|.+++|.+++++.+..|...+|.+.++++++...+.++.++.++..+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 77777788899999875 7999999999999999999999999999999999999999999999988888777665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=109.17 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=94.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.....++.|.+++. .+|.+. ....+......++.+++.++.++++||+|||++++++.++.++..+++.+.
T Consensus 277 ~~~~~~~~~~~~~~--------~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 347 (471)
T PRK10504 277 SGMLPFMTPVFLQI--------GLGFSP-FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV 347 (471)
T ss_pred HHHHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence 44556678888775 234444 455555666777778888999999999999999988877776665554432
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
.. .. ..+...+...+.+.+.+... +....+..+.+|.+.|+++.++.++...+|..+++.+.+.+.+..|+
T Consensus 348 ~~----~~--~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 348 AL----LG--WYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred cc----cc--cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 01 11111111222222222222 23335567889999999999999999999999999999999887765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=104.75 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Q 009862 304 LVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTT 383 (523)
Q Consensus 304 li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~ 383 (523)
+..+++..+....|.+++......+... .+|++. .+..++.....+..+++++++|+|.||+|-|+++.++
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~fg~~--------~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~ 324 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGVFGAA--------DLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG 324 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence 3333333344444677777777777763 355655 5677778888999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHH
Q 009862 384 IPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVT 463 (523)
Q Consensus 384 ~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~ 463 (523)
+++..+.++...+...- ..+....++.+.+.++.....-.+.+++.|++.-++.+|++++.++..++++|
T Consensus 325 lvi~~~~~~~~~~~~~~----------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp 394 (438)
T COG2270 325 LVILSIAALYLIFLEGE----------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGP 394 (438)
T ss_pred HHHHHHHHHHHHHcccc----------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHH
Confidence 77766555544322111 13344444555566666777778889999999999999999999999999999
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCC
Q 009862 464 YTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMP 504 (523)
Q Consensus 464 ~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~ 504 (523)
.+.+.+.+..|....-....++.+...++.++++|+.+.++
T Consensus 395 ~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~~ 435 (438)
T COG2270 395 FLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRRE 435 (438)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence 99999999887644444444445555666677777665443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-08 Score=103.82 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=84.3
Q ss_pred cCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHH--
Q 009862 341 LGISSESASFLIS-AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVI-- 417 (523)
Q Consensus 341 lgls~~~~~~l~~-~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~-- 417 (523)
+|++. ....++. ....++.+++.++++++.||+|||+.+.++.++.+++.+.+....... . ..+...+...
T Consensus 240 ~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~--~---~~~~~~~~~~~~ 313 (402)
T PRK11902 240 AGFSA-GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP--K---HLWTMALAIGIE 313 (402)
T ss_pred cCCCH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--C---cHHHHHHHHHHH
Confidence 44444 3333343 334456789999999999999999987766665554443332211110 0 1112222221
Q ss_pred -HHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 009862 418 -IYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFV 493 (523)
Q Consensus 418 -~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~ 493 (523)
++.++......+....++.+.+|.+. .++.+....++.++++.+.+.+.+.+||...|.+.++++++..++.
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 12222223333444456677777554 4555556677887777889999999999888888777776665544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=108.17 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=115.7
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETL 400 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~ 400 (523)
+...+|.+.++ .++.++ ....++....+++.+++.++.+++.+|+++++++..+.++.+++++.+++..+.
T Consensus 237 ~~aLlPl~a~~--------~l~~~a-~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 237 VWALLPLFARD--------VLGGGA-SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred HHHhhhHHHHH--------HhCCcH-HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence 34457877765 355555 455667778899999999999999999999998888888888777776655443
Q ss_pred hccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHH
Q 009862 401 QLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFG 480 (523)
Q Consensus 401 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~ 480 (523)
+ ...+.+ ++.++..........+.+.+..|.+.||+.++++.+....+..+|..+.|.+.+.+|...++.
T Consensus 308 ~---------~~~~~l-~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~ 377 (524)
T PF05977_consen 308 W---------LALIAL-FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALL 377 (524)
T ss_pred H---------HHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3 222222 333333333334444666889999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHhh-eeccCCC
Q 009862 481 VYAVVCFISWVFVF-LRVPETK 501 (523)
Q Consensus 481 i~~i~~~i~~v~~~-~~lpEtk 501 (523)
+.+++.++..++.+ +.+|+.+
T Consensus 378 ~a~~~lll~~~~~~~~~l~~~~ 399 (524)
T PF05977_consen 378 IAGAALLLSALIALRFPLRQGE 399 (524)
T ss_pred HHHHHHHHHHHHHHHhcCcccc
Confidence 66655544444433 3344443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-08 Score=99.52 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 381 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll 381 (523)
.++++.+..+ .....-.++..|.+.|+.+.. .+|++. .........+..+.+++.++.++++||+|+|+++.
T Consensus 141 ~~~l~~~~~f-~yvg~e~~~~~w~~~yl~~~~------~~g~s~-~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~ 212 (310)
T TIGR01272 141 HLVLGALGIF-VYVGAEVSAGSFLVNFLSDPH------ALGLPE-DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA 212 (310)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc------cCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3444433333 333334577889999997521 245555 45556677888899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH
Q 009862 382 TTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII 461 (523)
Q Consensus 382 ~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii 461 (523)
++.++.+++.+++..... . .....+. ..+++.....|.......+.+|.+ .+++.++. ....+|+++
T Consensus 213 ~~~~l~~~~~~l~~~~~~-~---------~~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i 279 (310)
T TIGR01272 213 FNAFLAVLLSIGAALTHG-Y---------VAMWFVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAI 279 (310)
T ss_pred HHHHHHHHHHHHHHHcCC-H---------HHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchH
Confidence 776666655543322111 0 1122222 233444444455445556767754 45566664 567799999
Q ss_pred HHHHHHHHHHhhCchhHHHHHH
Q 009862 462 VTYTLPVMLSSIGLAGAFGVYA 483 (523)
Q Consensus 462 g~~l~~~l~~~~G~~~~f~i~~ 483 (523)
.|.+.|.+.+..|.+.++++..
T Consensus 280 ~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 280 VPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHHHHHhccchHHHHHHH
Confidence 9999999999999877765333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=107.62 Aligned_cols=141 Identities=9% Similarity=0.018 Sum_probs=88.0
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+.....+.|.+++. .+|.+. ....+......++.+++.++.++++||+|+|+++.++.++++++.+.+.+.
T Consensus 244 ~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 244 TFAVSASSLFYVRY--------VLNDTG-LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHhhhheeeEee--------ecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555666554 234333 333333333456677889999999999999999998887776665554432
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT-------KVRGICIAICAMAYWICDIIVTYTLPVML 470 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~-------~~Rg~a~gi~~~~~~lG~iig~~l~~~l~ 470 (523)
.. ...+..++...+. ++......+..+++.+|..|. +.+|...|+.++...+|..+++.+.+.++
T Consensus 315 ~~-------~~~~~~~~~~~l~-g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 315 SV-------WSLPVALVALAIA-SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred Cc-------hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222222222 222223334455666676653 45699999999999999999999999998
Q ss_pred HhhCc
Q 009862 471 SSIGL 475 (523)
Q Consensus 471 ~~~G~ 475 (523)
+..|+
T Consensus 387 ~~~G~ 391 (448)
T PRK09848 387 GLSGY 391 (448)
T ss_pred HHcCC
Confidence 87665
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-08 Score=100.36 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=91.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
++....+.|.++++ .+|.+. ...........++.+++.++.+++.||+|||+.+..+..+..++.+++...
T Consensus 222 ~~~~~~~~~~~~~~--------~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 222 FFAFFSGAPFVYID--------IMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHcChHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888764 244444 455556667788899999999999999999998887776666655544432
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.... ...+..++...++.+.......+....+..|.+| +.|+++.++.+.....++.+.+.+.+.+.+..+ .
T Consensus 293 ~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~ 364 (385)
T TIGR00710 293 AILG-----LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA--W 364 (385)
T ss_pred HHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccCh--H
Confidence 2111 0011122222222222222233444455677777 578999999888877666565555554433323 3
Q ss_pred HHHHHHHHHHHHHH
Q 009862 478 AFGVYAVVCFISWV 491 (523)
Q Consensus 478 ~f~i~~i~~~i~~v 491 (523)
.+.++..++.+..+
T Consensus 365 ~~~~~~~~~~~~~~ 378 (385)
T TIGR00710 365 PMSLSCLVLAVVSV 378 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 34343443333333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-08 Score=101.64 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=109.9
Q ss_pred hhhhhhchHHHHHhcC-chhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAG-VEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G-~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
......|.+.++++.| . +. .......++..+..++.-.+.+++..|+|-|++++++++..++=..+++.
T Consensus 223 ~~~~~~f~~~yl~~~gg~---------~~-~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 223 HAAYYTFFSIYLQELGGY---------SG-STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHcccc---------hh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888865 3 22 34444555777889999999999999999999999998888777666654
Q ss_pred HHhhhccchhhhHHHHHHH-HHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhC
Q 009862 397 SETLQLISPVLKAGISTAC-VIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMA-YWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~-~~lG~iig~~l~~~l~~~~G 474 (523)
..... ...+...++ ..+.+..++..... ...++.+..|++.|+++.+++++. ..+|..++..++|++.+.+|
T Consensus 293 ~~~~~-----~~~~~~~~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 293 FSDPW-----PFIVALQLLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred hcCCc-----HHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 41111 000011111 12234444433333 336778999999999999998765 56999999999999999887
Q ss_pred chh------HHHHHHHHHHHHHHHhheeccCC
Q 009862 475 LAG------AFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 475 ~~~------~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+. .+.+.+++.++..++.+++.||+
T Consensus 367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 367 ARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 554 33444444444445555545554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.9e-08 Score=102.88 Aligned_cols=140 Identities=15% Similarity=0.203 Sum_probs=83.9
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
.+..+.|.++.+ ++|++. ........+..++.+++.++.+++.||+|||+.+++++++..++.+++.+...
T Consensus 221 ~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 291 (392)
T PRK10473 221 TFVNTSPVLLME--------QMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS 291 (392)
T ss_pred HHHHhCHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666654 245544 34455566778888899999999999999999988887777666655544322
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHH
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAF 479 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f 479 (523)
.. ...+...+...+++.++.. .+..++.|.+.|+ +..+....++..+++.+.+.+.+.+|+....
T Consensus 292 ~~---------~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~ 356 (392)
T PRK10473 292 HA---------VSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWN 356 (392)
T ss_pred HH---------HHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 11 1122222222222222221 2224455655553 4444556788888888888888888876544
Q ss_pred HHHH
Q 009862 480 GVYA 483 (523)
Q Consensus 480 ~i~~ 483 (523)
.+.+
T Consensus 357 ~~~~ 360 (392)
T PRK10473 357 MLIG 360 (392)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=99.60 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=93.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
+.....+.|.++++.|. +. ........+..++.++..++.+++.||+|+|+++..+.++.+++.+.+...
T Consensus 221 ~~~~~~~~~~~~~~~g~---------s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 221 HAAYYGFSAIYWQAAGY---------SA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred hHhHHHHHHHHHHHCCC---------CH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777766443 34 344445557777888899999999999999999888887777766554433
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCch
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICA-MAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~-~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
.+. +..++..++.+.+++.. .+....++.+. +...+++..++.+ ....+|..+++.+.|.+.+.+|+
T Consensus 291 ~~~---------~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~- 358 (382)
T PRK11128 291 TAL---------PWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA- 358 (382)
T ss_pred hhH---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence 222 12233333333333332 23333445565 4555688888876 44567778999999999999886
Q ss_pred hHHHHHHHHHH
Q 009862 477 GAFGVYAVVCF 487 (523)
Q Consensus 477 ~~f~i~~i~~~ 487 (523)
..+++.+++.+
T Consensus 359 ~~~~~~~~~~~ 369 (382)
T PRK11128 359 GVFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-08 Score=105.08 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPI 430 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 430 (523)
.......+..+++.+++++++||+|||+.+.++.++.+++.+.+.+... ...+.. ++..++.++......++
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP-------SNVWLI-FALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc-------chHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444556777888899999999999999988777655543333322110 111122 22223333333445566
Q ss_pred cceeeecccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 431 PNILCAEIFP-------TKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 431 ~~~~~aElfP-------~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
.+++++|+.+ .+..|...++.+++..+|..+++.+.+.+++..|+
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7778888874 34457788999999999999999999999988776
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-08 Score=101.09 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=94.5
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
+....|.+.++.+ ..|++. ....+...+..++.+++.++.+++.||+|+|+++..+..+.+++.+++....
T Consensus 216 ~~~~~~~~~~~~~--------~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (382)
T PRK10091 216 FAWFSYIKPYMMF--------ISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG 286 (382)
T ss_pred HHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554 234444 4566667788889999999999999999999988887776666554443221
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS-IGLAG 477 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~-~G~~~ 477 (523)
... +..++..++..........+.......+..|.+.++.+ ..+....+|.+++|.+.+.+.+. .++..
T Consensus 287 ~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~ 356 (382)
T PRK10091 287 GMK--------TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNY 356 (382)
T ss_pred hhH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcch
Confidence 111 11222222222222222222222233455555555544 44677899999999999999985 57877
Q ss_pred HHHHHHHHHHHHHHHhhe
Q 009862 478 AFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~ 495 (523)
.+.+.++++.+......+
T Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 357 VALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666555544444333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=104.64 Aligned_cols=155 Identities=10% Similarity=-0.093 Sum_probs=89.2
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009862 291 WAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKL 370 (523)
Q Consensus 291 ~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~L 370 (523)
++.+++++..+.++..++..++..+ +++....+.|.++++.|+ +.............+..+++.++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~---------~~~~~g~~~~~~~~~~~~~g~~~~g~l 268 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKL-GDSAATVLTTLFLLDMGF---------SKEEIALVAKINGLLGAILGGLIGGII 268 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC---------CHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455554332234444444343333 356677888888877544 343333333333446778999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccc--hhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHH
Q 009862 371 MDVAGRRKLLLTTIPVLIVSLIILVISETLQLIS--PVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICI 448 (523)
Q Consensus 371 sDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~ 448 (523)
+||+|||+.+++++++.++...++.+.....+.. .....+ .++...++..+......+....+..|.+|++.|++.+
T Consensus 269 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 347 (356)
T TIGR00901 269 MQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL-MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM 347 (356)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 9999999988887777666555443321110000 001111 2222222323333344455567789999999999999
Q ss_pred HHHHHHHH
Q 009862 449 AICAMAYW 456 (523)
Q Consensus 449 gi~~~~~~ 456 (523)
|+.+...+
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 99776654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-08 Score=101.12 Aligned_cols=165 Identities=12% Similarity=-0.047 Sum_probs=96.4
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
.....+.|.++.+ .++++. ....+......++.+++.++.++++||+++|+.+.++.++.++..+++.+..
T Consensus 232 ~~~~~~~p~~~~~--------~~g~~~-~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 302 (406)
T PRK15402 232 LAWIALSPVILIS--------GEQLSS-YEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALAT 302 (406)
T ss_pred HHHHHHhHHHHHH--------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777654 244444 3333444455567888999999999999999988887776666655554432
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
... .. ..+..++..+++..+.+... +...... ...+++.|++..++.++...++..+++.+.+.+.+..++...
T Consensus 303 ~~~-~~---~~~~~~~~~~~~g~g~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 376 (406)
T PRK15402 303 VIS-SH---AYLWLTAGLSLYAFGIGLAN-AGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLF 376 (406)
T ss_pred Hcc-cc---cHHHHHHHHHHHHHHHHHHh-hhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 111 00 11112222222322222222 2222222 223347899999999999999999999999998887776544
Q ss_pred HHHHHHHHHHHHHHhheecc
Q 009862 479 FGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~~lp 498 (523)
.+...+..++..++..++.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK15402 377 NLFNLANGLLWLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44433333333333333333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-08 Score=101.75 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeec
Q 009862 358 FLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAE 437 (523)
Q Consensus 358 l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aE 437 (523)
+...++.++.|+++||+|||++++.+.++.+++.+++.+..++. .... .....+++..++.+.......+....++.|
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA-TIGI-WAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh-hhHH-HHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 34456889999999999999999999888888777766544332 0000 001122333333344444445555677899
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 438 IFPTKVRGICIAICAMAYWICDIIVTYTLPVML--------SSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 438 lfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~--------~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
.+|.+.|++..++......+|.++++.+.+.+. ...+|+..+.+.++++++..+ .....||++
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETP 194 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Confidence 999999999999999999999999988877654 345788887766555544433 333455543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-07 Score=97.29 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=90.9
Q ss_pred hhhhhhch-HHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYT-PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~-p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
.+....|. |.+.++.|+ +. ...........++.+++.++.+++.||.+|+ .++.+..+..++.+.+..
T Consensus 232 ~~~~~~~~~p~~~~~~g~---------s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~ 300 (394)
T PRK10213 232 QFAFFTYIRPVYMNLAGF---------GV-DGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTL 300 (394)
T ss_pred HHHHHHHHHHHHHHhcCC---------Ch-hHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH
Confidence 33444454 666665443 44 4455556677788899999999999996544 433333333333222221
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
... ..+......++++.++. ...+....++.+..|. .++...++......+|..+++.+.+.+.+..|+.
T Consensus 301 ~~~--------~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~ 370 (394)
T PRK10213 301 WGS--------DKIVATGVAIIWGLTFA-LVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT 370 (394)
T ss_pred Hhh--------hHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 111 11122222233332332 2333333345666664 4567777777888999999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009862 477 GAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~ 494 (523)
..+...++++++..+++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~ 388 (394)
T PRK10213 371 SPLMLSGTLMLLTALLVT 388 (394)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 777666655555544443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=105.81 Aligned_cols=183 Identities=19% Similarity=0.203 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRK 378 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~ 378 (523)
.|.+...+.+.+.--|+ ||++...+..|+... + .+.+|++.+....+..+..++++ ...+++||++|| +|+|+
T Consensus 20 Pr~l~~if~vE~WERFs-yYGmraiL~~Yl~~~-~---~~gLg~~~~~A~~l~~~y~slVY-~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 20 PRGLYLIFFVELWERFS-YYGMRAILILYLYYQ-L---GDGLGFDETHATGLFSAYGSLVY-LTPIIGGWLADRVLGTRR 93 (498)
T ss_pred CchHHHHHHHHHHHHHh-hhhhHHHHHHHHHHh-c---cccCCcChHhhHHHHHHHHHHHH-HHHHHHHHHHHHhcchhH
Confidence 48888888888888885 888887777777542 1 11256888666666665555555 667899999999 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc--hhhHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK--VRGICIAICAMAYW 456 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~--~Rg~a~gi~~~~~~ 456 (523)
.++.+.++.++..++++...... ...+.+...+..+..+.+-+....++.|++|++ .|-.+.++.++..+
T Consensus 94 tI~lGail~~iGh~~L~~~~~~~--------~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN 165 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSVSG--------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN 165 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccccc--------ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEee
Confidence 99999999999988887543000 012223333333555556666667789999863 37788888899999
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 457 ICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 457 lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
+|++++|.+.+++....||...|.+.++-..+..+..++.
T Consensus 166 iGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988887777766655543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=100.13 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPI 430 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 430 (523)
.+..+..++.+++.+++++++||+|+|+++..+..+.++..+++.+.+.. ..+..++..++ .++......++
T Consensus 267 ~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l-~g~~~~~~~~l 338 (460)
T PRK11462 267 AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQ-------ASITMFVFIFV-IGVLHQLVTPI 338 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchh-------HHHHHHHHHHH-HHHHHHHHHHH
Confidence 34556667788899999999999999988775554443333332221110 01111222222 22233334455
Q ss_pred cceeeecccC-----cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 431 PNILCAEIFP-----TKVR--GICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 431 ~~~~~aElfP-----~~~R--g~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
.+.+.+|... +..| |..++...++.++|..+++.+.+.+++..|+
T Consensus 339 ~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 339 QWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5566666644 3344 4445666789999999999999999887655
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-08 Score=100.30 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=97.7
Q ss_pred hhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHH-HHHHHHH
Q 009862 316 SGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVL-IVSLIIL 394 (523)
Q Consensus 316 ~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~-~i~~l~l 394 (523)
.++.....++|.++++.|. +. ....+...+..+...++.++.+.++||+|||........+. +++.+.+
T Consensus 18 ~~~~~~~p~l~~~l~~~g~---------s~-~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~ 87 (382)
T TIGR00902 18 CAYGIFLPFFPAWLKGIGL---------GE-EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3455677888999988555 33 56677777888999999999999999999864432222111 1111111
Q ss_pred H-HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 395 V-ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 395 ~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
. ...++ + .+++..++.+.+.....|...+++.+ + .+.|++++|.......+|.++++.+.+.+.+.+
T Consensus 88 ~~~~~~~---------~-~l~~~~~l~~~~~~~~~p~~~al~~~-~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~ 155 (382)
T TIGR00902 88 SAGAHNA---------W-LLFIAIGLFALFFSAGMPIGDALANT-W-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF 155 (382)
T ss_pred HHhhhhH---------H-HHHHHHHHHHHHHccchhHHHHHHHH-H-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 11111 1 22222332333333345555555444 2 567899999999999999999999999999999
Q ss_pred CchhHHHHHHHHH
Q 009862 474 GLAGAFGVYAVVC 486 (523)
Q Consensus 474 G~~~~f~i~~i~~ 486 (523)
||+..|.+..++.
T Consensus 156 g~~~~f~~~~~~~ 168 (382)
T TIGR00902 156 DEQNILAILTAGL 168 (382)
T ss_pred ChhHHHHHHHHHH
Confidence 9999887766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=115.60 Aligned_cols=163 Identities=12% Similarity=-0.084 Sum_probs=101.7
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+..++|.|+++ .+|.+. ....++.+...++.+++.++.++++++.++++.+..+.++.+++.+.+.+.
T Consensus 241 ~~~~~~~~p~~~~~--------~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (1140)
T PRK06814 241 GAVVLSQLPLLAKE--------TLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFA 311 (1140)
T ss_pred HHHHHHHhHHHHHH--------HcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhc
Confidence 34566788999876 245555 455666778889999999999999988877766555555554444433321
Q ss_pred Hhh-hc----------cchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 398 ETL-QL----------ISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTL 466 (523)
Q Consensus 398 ~~~-~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~ 466 (523)
... .. .......+..++..+++ +++.....+...+++.+.+|.+.||+++|+.+++..++..+++.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 312 SSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL-AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred ccccccccccccchhhhhcccccHHHHHHHHHH-HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 000 00 00001122222222333 3333333344556778999999999999999999999999999999
Q ss_pred HHHHH-hhCchhHHHHHHHHHHHHH
Q 009862 467 PVMLS-SIGLAGAFGVYAVVCFISW 490 (523)
Q Consensus 467 ~~l~~-~~G~~~~f~i~~i~~~i~~ 490 (523)
+.+.+ ..+....+++.++++++.+
T Consensus 391 g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 391 ALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 88874 3455444544444433333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.2e-08 Score=99.99 Aligned_cols=162 Identities=11% Similarity=-0.013 Sum_probs=100.9
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH-HHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTI-PVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~-~l~~i~~l~l~ 395 (523)
+...+..++|.++++.|. +. ....+..++..+..+++.++.|.++||+|||....-.. ++..++.+.+.
T Consensus 19 ~~g~~~p~l~~~l~~~g~---------s~-~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PRK11128 19 AYGVFLPFWSVWLKGQGY---------TP-ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFW 88 (382)
T ss_pred HHHHHhhhHHHHHHhcCC---------CH-HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 455677788899988554 33 67777788888999999999999999999953211111 11111111111
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
.. ..+.+ .+++.....++......+...+++.+. .+.|+.+.+...+...+|.+++|.+.+++.+.+||
T Consensus 89 ~~--------~~~~~-~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~ 157 (382)
T PRK11128 89 FG--------AHSFW-LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE 157 (382)
T ss_pred Hh--------cccHH-HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 10 01111 222233333333444455554554444 34578888888889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhheeccCC
Q 009862 476 AGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+..|++.++..++..+ ..++.||.
T Consensus 158 ~~~f~~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 158 QAILWILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred hHHHHHHHHHHHHHHH-HHHccCCC
Confidence 9888776654444333 33345654
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=99.27 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 429 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (523)
..+..++.++.++|.++.++++||+|||..++++.++..++.+++.+..... ..-.+++..+..+........
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~-------~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP-------SFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHhHHHHH
Confidence 3455678899999999999999999999999988887777766665544332 122344444444434333333
Q ss_pred ccceeeecccCcchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHh-hCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 430 IPNILCAEIFPTKVRGICIAICAMAYWICDIIVTY-TLPVMLSS-IGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 430 i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~-l~~~l~~~-~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+...|+.|+.|++.||....+..++..+|..++.. ..+.+... ..|...+.+..+.+++..+ ...++||+.
T Consensus 136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESP 208 (485)
T KOG0569|consen 136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESP 208 (485)
T ss_pred HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 44467899999999999999999999999888844 34445433 3465555555555544444 445589973
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-08 Score=102.27 Aligned_cols=229 Identities=12% Similarity=0.025 Sum_probs=139.3
Q ss_pred CCCchhHHHhhhhhhhhhhhhhhhcCCCCCCCCCCCcc-----------ccc--CcccHHHHhccchhhHHHHHHHHHHH
Q 009862 246 PEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSE-----------TAS--KGPSWAALLEAGVKRALLVGVGIQIL 312 (523)
Q Consensus 246 ~~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~-----------~~~--~~~~~~~L~~~~~~~~~li~~~l~~~ 312 (523)
++..-|+..+++..+..+.......++|.......++| ... ...+|+.+++. ..++..++..+
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts---~~vwai~~~~f- 268 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTS---PPVWAIWISAF- 268 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcC---HHHHHHHHHHH-
Confidence 34445566666655555554445555554432211111 111 24467777774 34444444444
Q ss_pred HHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC---------hHHHHHH
Q 009862 313 QQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGR---------RKLLLTT 383 (523)
Q Consensus 313 ~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GR---------R~lll~~ 383 (523)
....+++.+..|+|.|+++. ++++- ....+.+++..+.+++..+++|.++||+-+ |..-.++
T Consensus 269 ~~~~~~~~l~~y~PtY~~~V--------L~f~v-~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 269 GGNWGFYLLLTYLPTYLKEV--------LGFDV-RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHhhHHHHHH--------hCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 44446889999999999983 66666 566677889999999999999999998855 2222344
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHH
Q 009862 384 IPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIV 462 (523)
Q Consensus 384 ~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig 462 (523)
..+.+++++++.+..... .+..++++.+..++.+.. ... .+..-.. .++.-+..+|+.+....+.++++
T Consensus 340 ~~~~ai~l~~l~~~~~~~-------~~~a~~~l~~~~~~~g~~--~~G-f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~ 409 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTSDEH-------RLLAVILLTIAIGLSGFN--ISG-FYKNHQDIAPQHAGFVMGIINFVGALAGFIA 409 (466)
T ss_pred HHHHHHHHHeeeecCCCc-------chHHHHHHHHHHHHcccc--hhh-hHhhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 444455555444332211 112222222222222111 111 1122222 56778999999999999999999
Q ss_pred HHHHHHHHH---hhCchhHHHHHHHHHHHHHHHhheec
Q 009862 463 TYTLPVMLS---SIGLAGAFGVYAVVCFISWVFVFLRV 497 (523)
Q Consensus 463 ~~l~~~l~~---~~G~~~~f~i~~i~~~i~~v~~~~~l 497 (523)
|.+.+.+.. ...|+.+|++.+++.++..++..++-
T Consensus 410 P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 410 PLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 999999984 34789999999998888876665553
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=98.69 Aligned_cols=141 Identities=12% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccc
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYG 428 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 428 (523)
......+..+..++..++.+++.||+++|+.+.+++++.++..+.+.+... ..+...+...++ +.......
T Consensus 246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~g~~~~~ 316 (395)
T PRK10054 246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN--------SLLLWGMSAAVF-TVGEIIYA 316 (395)
T ss_pred HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch--------HHHHHHHHHHHH-HHHHHHHH
Confidence 334444555566666778899999999999888877666665544432111 011122222222 22223334
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccC
Q 009862 429 PIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 429 ~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
|....++.+..|++.|+++.+..+ ..++|..++|.+.+.+.+..|....|.+.+++.+++.++.....+|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRA 386 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhcccc
Confidence 454566778899999999988755 6779999999999999999998888877777777666666644443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-08 Score=102.21 Aligned_cols=170 Identities=15% Similarity=0.073 Sum_probs=110.0
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCChH-HHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGRRK-LLLTTIPVLIVSLII 393 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GRR~-lll~~~~l~~i~~l~ 393 (523)
..+..|++.++.+ .+|++. ....++.++..+...+..++.|+++|| +|||+ .++.+.+..+++.++
T Consensus 16 ~~~~~~l~~~~~~--------~~g~s~-~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 16 AIVSTYLLFFYTD--------VLGLSA-AFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred HHHHHHHHHHHHH--------ccCCCH-HHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 4455566666665 356656 566777778889999999999999998 67744 566676666666665
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIVTYTLPVMLS- 471 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~- 471 (523)
+...+... .....+..++..+++..+... ......++.+|+. +.+.|++..++.+.+..+|.++++.+.+.+..
T Consensus 87 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 162 (437)
T TIGR00792 87 LFTTPDFS---ATGKLVYAYITYILLGLFYSF-VNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY 162 (437)
T ss_pred HHhCCCCC---cchHHHHHHHHHHHHHHHHHh-hcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433211 111111222222222222232 2222335667876 46889999999888889998888777666654
Q ss_pred ------hhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 472 ------SIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 472 ------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
..+|+..+.++++++++..++.+++.||++
T Consensus 163 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 163 FGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 346888888888888877777777777764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.7e-08 Score=99.83 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
.......++..+..++...+..++.+|+|.|+.++++..++++=.+..++.++.. .+..+-++-+.-...
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~----------~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPW----------VISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHH----------HHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchH----------HHHHHHHHHHHHHHH
Confidence 3455566677888899999999999999999999999888888777766554433 233333332222222
Q ss_pred cccccceeeecccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~-~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
......-|+++.+|++..++...+. +....+|.++.+.+.|.+.+.+|.+.+|++.+.+.++..++..+.+++.+.
T Consensus 329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 2222236778999999999999886 677889999999999999999999999999999888888888887776554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=97.53 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=91.1
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-GRRKLLLTTIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-GRR~lll~~~~l~~i~~l~l~ 395 (523)
.++.+..|+|.++++.|. +. .......++..++.+++.++.+++.||+ +||+.+.++.++.+++.+.+.
T Consensus 212 ~~~~~~~~lp~~~~~~g~---------~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 212 LYYSLIGWLPAILISHGA---------SA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 356677889999887544 33 4556667778899999999999999999 566666666666666555444
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeee-cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCA-EIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~a-ElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
+..... ......++ ++......+.....+. +..+++.++...++.+....++.+++|.+.+.+.+..|
T Consensus 282 ~~~~~~----------~~~~~~l~-g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 282 FAPMHG----------LWAWALVL-GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HhhhhH----------HHHHHHHH-HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 322111 11111222 2222222333323333 33456778999999999999999999999999999887
Q ss_pred c
Q 009862 475 L 475 (523)
Q Consensus 475 ~ 475 (523)
.
T Consensus 351 ~ 351 (355)
T TIGR00896 351 N 351 (355)
T ss_pred c
Confidence 4
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=94.29 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=75.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+.+.+..+.|.++.+ .+|++. ....+...+..++.+++.++.+++.||+|||+.+..+..+..+..+.+..
T Consensus 209 ~~~~~~~~~~~~~~~--------~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 279 (377)
T PRK11102 209 GMFSFLTAGPFVYIE--------LNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVV 279 (377)
T ss_pred HHHHHHHcCHHHHHH--------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677776655 244444 45556667888889999999999999999999988877655444333322
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHH-HHHHHHHHH
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYW-ICDIIVTYT 465 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~-lG~iig~~l 465 (523)
..... ...+...+...++.+..... .+....++.|..| +.|+++.++++.... +|..+++.+
T Consensus 280 ~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 280 SALLD-----LGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHh-----hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 01111222222222222221 2222234467766 789999998766533 455555544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.8e-08 Score=103.44 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=120.1
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIY 419 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~ 419 (523)
++++.. ..-..+.+++.++++++.++++.+.||+.-.+.+..+.++.++..++.....++. .++++.++
T Consensus 75 dl~~~~-~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~----------~~ialr~l 143 (495)
T KOG2533|consen 75 DLKLVG-NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFP----------GLIALRFL 143 (495)
T ss_pred ccchhh-hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHH
Confidence 344444 4556677789999999999999999999966666555555555444443333333 56777777
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHh
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS------SIGLAGAFGVYAVVCFISWVFV 493 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~------~~G~~~~f~i~~i~~~i~~v~~ 493 (523)
.+++..+..|....+++.+|..+.|++-+|+.+....+|+++++.+...+.. ..||++.|++-++++++.++++
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 7777777777777888999999999999999999999999999999888643 4589999999999999999999
Q ss_pred heeccCCCC
Q 009862 494 FLRVPETKG 502 (523)
Q Consensus 494 ~~~lpEtk~ 502 (523)
++++|+...
T Consensus 224 f~~lp~~P~ 232 (495)
T KOG2533|consen 224 FFFLPDNPS 232 (495)
T ss_pred EEEecCChh
Confidence 999987644
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=97.38 Aligned_cols=178 Identities=15% Similarity=0.026 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHH--HHHHHHHHHHHHHHH-HHHHHhhCChHHHHH
Q 009862 306 GVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLI--SAFTTFLMLPCIGVA-MKLMDVAGRRKLLLT 382 (523)
Q Consensus 306 ~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~--~~i~~l~~lig~~l~-g~LsDr~GRR~lll~ 382 (523)
...+++ .|...+.....++|.++++.|. +. ....+. ..+..+..++..++. ++..||+|||+.+++
T Consensus 6 ~~~ly~-~~g~~~~~~~p~lp~~l~~~g~---------~~-~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 6 LGLLYL-SQGIPIGLAMDALPTLLREDGA---------PL-TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 334443 4444567778899999998655 34 344443 345566676677777 557899999988755
Q ss_pred HHHHH-HHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHH
Q 009862 383 TIPVL-IVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDII 461 (523)
Q Consensus 383 ~~~l~-~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ii 461 (523)
.+.+. +++...+.... ... ......+.......++.....+..-.+..|..+.+.++...+.......+|.++
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~ 148 (390)
T TIGR02718 75 PMQCLVSACLASLALVG----PDV--AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG 148 (390)
T ss_pred HHHHHHHHHHHHHHcCC----cch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH
Confidence 54332 22222222111 000 001112222223334444445555556678888888888888888888999999
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 462 VTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 462 g~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
++...+++.+.+||+..|++.+++.++..+..++..|+.
T Consensus 149 g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 149 GGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998888777666665554543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-08 Score=104.21 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=119.1
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+..+.+.+.++++ .+. ....++..+......+..++.+.+.||+|.|.+.+++.++.++++++..++
T Consensus 62 ~~~~Gv~~~~~~~~f~---------~s~-~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~ 131 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFG---------SSS-SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA 131 (509)
T ss_pred hheehhhHHHHHHHhC---------CCc-cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666543 334 346677778888888889999999999999999999999999999888877
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAG 477 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~ 477 (523)
.+++ ...+..-++.+.++++.+.|.. +++. .+..+.|+.+.|+......+|.++.|.+.-++++.+||++
T Consensus 132 ~~i~--------~l~lt~gvi~G~G~~~~~~pai-viv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 132 TSLW--------QLYLTFGVIGGLGLGLIYLPAV-VILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred hhHH--------HHHHHHHHHhhccchhhhcchh-hhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 7655 0112222233334444444444 3334 4456779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheecc
Q 009862 478 AFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 478 ~f~i~~i~~~i~~v~~~~~lp 498 (523)
.+++++.+++-+.+....+.|
T Consensus 202 ~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 202 ALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999988777777777666
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-07 Score=97.29 Aligned_cols=154 Identities=13% Similarity=0.054 Sum_probs=97.3
Q ss_pred hhhhhhchHHHH-HhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQIL-EQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p~il-~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
.+....|.+.++ ++ .+|++. ....+......++.+++.++++++.||+|||+++..+.++.++.+++..+
T Consensus 274 ~~~~~~~~~~~l~~~--------~~g~s~-~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 344 (438)
T PRK10133 274 QTACWSYLIRYAVEE--------IPGMTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF 344 (438)
T ss_pred HHHHHHHHHHHHhhh--------cCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677664 33 245555 55666677888999999999999999999999888776665544443322
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-c
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG-L 475 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G-~ 475 (523)
... . ..+..+ ...+++.....|.......+.+|.+ .+++.++..+ ..+|+.++|.+.+.+.+..| .
T Consensus 345 ~~~-------~---~~~~~~-~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~ 411 (438)
T PRK10133 345 AGG-------H---VGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_pred cCC-------h---HHHHHH-HHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccch
Confidence 111 0 112222 2233333344455556667777764 5677777754 45788899999999999887 6
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 009862 476 AGAFGVYAVVCFISWVFV 493 (523)
Q Consensus 476 ~~~f~i~~i~~~i~~v~~ 493 (523)
+..|++..++.+...++.
T Consensus 412 ~~~~~v~~~~~~~~~~~~ 429 (438)
T PRK10133 412 PTAELIPALCFAVIFIFA 429 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667765554444444443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-07 Score=96.02 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=80.7
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMD-VAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsD-r~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
...+.|.++++.+. ++ ....+...+..++.++.....+++.| |++.++.++.++++.++..+++.....
T Consensus 227 ~~~~~p~~~~~~~~---------~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~ 296 (400)
T PRK11646 227 VMLMLPIMVNDIAG---------SP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN 296 (400)
T ss_pred HHHhhhhhHHhhcC---------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 35677888876422 23 33333444444444444444455554 566666666666666655554443322
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
.. ...+...++..+. ....|....++.+..|.+.|++++|+.+....+|..++|.+.+.+.+..
T Consensus 297 ~~---------~~~~~~~l~~~g~-~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 297 LQ---------QLFTLICLFYIGS-IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HH---------HHHHHHHHHHHHH-HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 21 1222222222222 2333444567789999999999999999999999999999999999875
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-07 Score=99.08 Aligned_cols=142 Identities=16% Similarity=0.115 Sum_probs=96.5
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
.++...++.|.++++ .+|++. ....+......++.+++.++++++.||+|||+++.++.++.+++.+.+.+
T Consensus 270 ~~~~~~~~~p~~~~~--------~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 270 GLYGSFYLLPLYLQQ--------VLGYTA-LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 355667888999876 245555 45566677788899999999999999999999988887776666554432
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
... .....+......++.+.+.+....+.. ....+.+|++.|+++.++.++...+|+.+++.+.+.+.+..
T Consensus 341 ~~~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 341 TFT-----PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred cCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111122222222222222223333 33467789999999999999999999999999999888743
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=96.65 Aligned_cols=131 Identities=22% Similarity=0.229 Sum_probs=87.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
++....+.|.++.+ .++.+..........+..+..+++.++.++++||+++|+.+........++.+.+.+.
T Consensus 222 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 222 FSGFSFFLPLYLQE--------VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHHCCH--------HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhhcccchhhhh--------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887443 2444412455556677888888889999999999999887777666665555544322
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHH
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVT 463 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~ 463 (523)
... ......++...+ .++......+....++.+.+|++.|+++.|+.+....++.+++|
T Consensus 294 ~~~------~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFS------SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHH------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh------hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 211 011122222222 33344444566667789999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-07 Score=96.35 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=148.7
Q ss_pred hhHHHhhhhhhhhhhhhhhhcCCCCCCCCC------CCcccccCcccHHHHhc--cchhhHHHHHHHHHHHHHhhhhhhh
Q 009862 250 EYIQAAALVSQPALYSKELMDQHPVGPAMV------HPSETASKGPSWAALLE--AGVKRALLVGVGIQILQQFSGINGV 321 (523)
Q Consensus 250 ~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~------~~~~~~~~~~~~~~L~~--~~~~~~~li~~~l~~~~~~~g~~~i 321 (523)
-|...++++....+......+|.+...... ++.++......++++++ +...+.+...+.++++..+ +++.+
T Consensus 199 ~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~-a~f~~ 277 (477)
T TIGR01301 199 CFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWI-AWFPF 277 (477)
T ss_pred HHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHH
Confidence 345555556665566666666654311110 00111111112333332 1233556666666666655 46677
Q ss_pred hhchHHHHHhcCchhhh-hccCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHH
Q 009862 322 LYYTPQILEQAGVEVLL-SNLGIS-SESASFLISAFTTFLMLPCIGVAMKLMDVAGR-RKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 322 ~~~~p~il~~~G~~~~~-~~lgls-~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~lll~~~~l~~i~~l~l~~~~ 398 (523)
.+|.+.+..+.-+.... ....++ ......+...++++...+.+++.-++.+|+|+ |++..++.++.+++++...+..
T Consensus 278 ~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 278 ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 77777776542110000 000000 00113445555666666777778889999994 7777888888888877776544
Q ss_pred hhhc-----------cchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc--hhhHHHHHHHHHHHHHHHHHHHH
Q 009862 399 TLQL-----------ISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK--VRGICIAICAMAYWICDIIVTYT 465 (523)
Q Consensus 399 ~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~--~Rg~a~gi~~~~~~lG~iig~~l 465 (523)
.... ...........++.+...++..+....++++++++..|.+ ..|..+|+.|++.-+.+++....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~ 437 (477)
T TIGR01301 358 YVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLG 437 (477)
T ss_pred hhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3210 0000000123344444555556666788889999998854 45999999999999999999998
Q ss_pred HHHHHHhhC--chhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 466 LPVMLSSIG--LAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 466 ~~~l~~~~G--~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.+.+.+.+| ...++.+-++..+++++++++.+|+++.
T Consensus 438 ~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 438 SGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 888777776 3346667777778888888898998764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-07 Score=95.03 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=95.1
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
...+..|.++++ .+|.+. ....+......++.+++.++.+++.||.++|+++..+.. .++..+.+.....
T Consensus 223 ~~~~~~~~~~~~--------~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~ 292 (393)
T PRK11195 223 TLRFLVLAWAPV--------ALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHS 292 (393)
T ss_pred HHHHHHHHHHHH--------HcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhH
Confidence 334445555554 245555 456666778888999999999999999998887776643 3332222221111
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV-RGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~-Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
.+...+...+.+.+.+....+. .....+..|.+. +|++.++.++..+++..++..+.+.+ ..+|.+..
T Consensus 293 ---------~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 361 (393)
T PRK11195 293 ---------LLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVV 361 (393)
T ss_pred ---------HHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHH
Confidence 1122222223333333333333 344567666655 79999999999999999999888844 67787777
Q ss_pred HHHHHHHHHHHHHHhhe
Q 009862 479 FGVYAVVCFISWVFVFL 495 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~~ 495 (523)
+.+..+..++.+.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 362 AVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76655555555444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-07 Score=92.60 Aligned_cols=140 Identities=19% Similarity=0.109 Sum_probs=84.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
++.+..+.|.++++.|. +. ....+......++.+++.++.+++.||+|+|+.+....++.+++.+.+...
T Consensus 219 ~~~~~~~~p~~~~~~g~---------s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 219 FFAWLTGSPFILEQMGY---------SP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHhHHHHHHcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888876444 33 344445556667788899999999999999987766555555444433222
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
.... .. ..+..++...+. ++......+.......+.+| +.|+++.|+.+.....++.+++.+.+.+.+..
T Consensus 289 ~~~~--~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 289 SLLS--HP--SLVPLLIPFCVM-AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred HHhc--cC--cHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 1111 00 111122222222 22222333443344456666 47999999999998888889998888887643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.7e-07 Score=97.05 Aligned_cols=140 Identities=15% Similarity=0.018 Sum_probs=95.6
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
.+++..+|.|.+++.. .|++. ..+.+......++..++.++.|+++||+|||+++..+.++.+++.+.+..
T Consensus 274 ~~~~~~~~~~~~lq~v--------~g~s~-~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~ 344 (495)
T PRK14995 274 TLVGFELLMAQELQFV--------HGLSP-LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAM 344 (495)
T ss_pred HHHHHHHHHHHHHHHH--------cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 3556677889888762 45555 55666677788889999999999999999999888777766665554432
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
... .. ..+......++.+.+.+.. .+.....+.+..|.+.++.+.++.++...+|..+++.+.+.+.+.
T Consensus 345 ~~~----~~--~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 345 TDF----ST--QQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hcC----CC--chHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11 1111222222333233322 233334456788999999999999999999999999999988753
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-10 Score=120.93 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH---hhhccchhhhHHHHHHHHHHHHHHHh
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE---TLQLISPVLKAGISTACVIIYFCCFV 424 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 424 (523)
...+..+...++.++|.+++|+++||+|||+.++++.++..++.++..+.+ +.. .+.+..++.++..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFW----------MLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccc----------ccccccccccccc
Confidence 456677788899999999999999999999999999998888888777655 332 4455555566666
Q ss_pred hccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 425 AAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI---GLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 425 ~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~---G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
++..++..+++.|..|++.|+...++.+....+|.+++..+...+.... +|+..+.+.++.+++..+ ..+++||+
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6666777789999999999999999998888888888777665543333 377776666666554433 44668987
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=92.02 Aligned_cols=134 Identities=7% Similarity=-0.002 Sum_probs=85.6
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 398 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~ 398 (523)
..+..|++.++++.+. +.+. ...............++.++++++.||+++|+++.++.++.+++++++.+..
T Consensus 249 ~~~~s~l~~y~~~~~~-------~~~~-~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~ 320 (410)
T TIGR00885 249 IMCWTFIIQYAVRLIP-------GMTA-GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG 320 (410)
T ss_pred HHHHHHHHHHHhhccC-------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455777887765321 2222 2222233344467789999999999999999998888777777666554322
Q ss_pred hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 399 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 399 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
.. ....++.+..++.+..+ |..+.+..+.++++.+..+.+++... +|+.+.|.+.|.+.|..
T Consensus 321 ~~----------~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 321 GH----------VGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred Ch----------HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 11 12233333333444444 66667777888877665555555443 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-08 Score=105.26 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG--RRKL 379 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G--RR~l 379 (523)
+.++.+.+.......+++...+++|.+.++.|+ +. ..+.....+.++..+++.++.|+++|+.. ++.+
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~---------~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~ 367 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL---------SS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVL 367 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------Ch-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHH
Confidence 444445555555555788888899999887655 34 56666677889999999999999999988 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
..++.++.+++.+.+.+...+. .++.++++.++..+.+..+...++.|+++.+.-..+.|+..++..++.
T Consensus 368 ~~~~ll~~gl~~~~~p~~~~~~----------~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~ 437 (509)
T KOG2504|consen 368 FLLTLLIAGLARLFLPFATTYV----------GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA 437 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH
Confidence 5556566666554444443332 445555555555555666665677999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHH
Q 009862 460 IIVTYTLPVMLSSIG-LAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 460 iig~~l~~~l~~~~G-~~~~f~i~~i~~~i~~v~ 492 (523)
+++|.+.+.+.+..+ |...|.+..++.++.+++
T Consensus 438 l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 438 LVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 999999999999888 555555555544444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-07 Score=97.44 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=105.9
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCCh-HHHHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGRR-KLLLTTIPVLIVSLII 393 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GRR-~lll~~~~l~~i~~l~ 393 (523)
..+..|++.++.+ .+|++. .....+..+..+...+..++.|+++|| +||| +.++++.+..+++.++
T Consensus 26 ~~~~~~l~~~~t~--------~~gls~-~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 26 QTVMLFLAYFYTD--------VFGLSA-AIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred HHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 4556677777766 466766 566777778888999999999999998 7774 5555666666666554
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
+...+... .....+...+..+++..++.....| ..++.+|+. +.+.|.+..++...+..+|..+++.+...+...
T Consensus 97 ~f~~p~~~---~~~~~~~~~~~~~l~~~~~t~~~ip-~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 97 TFYTPDFG---ATGKIIYACVTYILLSLVYTAINVP-YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred HHhCCCCC---cchHHHHHHHHHHHHHHHHHhhcch-HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332211 1111222222233333334433333 346678887 457899888888888889888888766555544
Q ss_pred h-------CchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 473 I-------GLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 473 ~-------G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
+ +|...+.+++++++++.+++++..+|.
T Consensus 173 ~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 173 LGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 3 455566666666666666666655554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-07 Score=91.45 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+..+.|.++++ .+|++. ........+..+..+++.+++++++||+|||+.+..+....+++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 311 (366)
T TIGR00886 241 FLGVSSIFAMFFKD--------QFGLSK-VTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLG 311 (366)
T ss_pred HHHHHHHHHHHHHH--------HcCCcH-HHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhc
Confidence 45667788888876 245555 445556667778888999999999999999887776665555544444322
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG 458 (523)
... ....+..+....++..+++.+. +..+.++++++| +.|++++|+.+...++|
T Consensus 312 ~~~-----~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 312 LVS-----PLSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CCC-----cchHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 110 0011122222222223333333 334466788887 68999999988777664
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-07 Score=87.40 Aligned_cols=137 Identities=11% Similarity=0.003 Sum_probs=87.6
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
.+.+....|.++++ .+|+|+.+.....+ .......+.+++.|.++||+||+...+.+..+..+..-...++
T Consensus 280 ~fPFi~lg~~fF~~--------rfGlS~~~a~~i~s-~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F 350 (459)
T KOG4686|consen 280 WFPFITLGPMFFQK--------RFGLSAVSAGNILS-TVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF 350 (459)
T ss_pred HHHHhhhhHHHHHH--------hhCCChhhccchhh-hhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh
Confidence 33444455666655 68888855544444 5556677888999999999999988776655443332222222
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
.... + ...+++++..+... ....|..++-+.|.+.-|+++|+++.+.++|-.+.|++.+.+.+.-|
T Consensus 351 t~ls-------P---y~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 351 TFLS-------P---YTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hhcc-------H---HHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 2111 1 22222222222211 11123445677888999999999999999999999999999998766
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=99.37 Aligned_cols=216 Identities=12% Similarity=-0.003 Sum_probs=114.5
Q ss_pred CCCchhHHHhhhhhhhhhhhhhhhcCCCC---CCCCCC------Ccccc-----cCcccHHHHhccchhhHHHHHHHHHH
Q 009862 246 PEEGEYIQAAALVSQPALYSKELMDQHPV---GPAMVH------PSETA-----SKGPSWAALLEAGVKRALLVGVGIQI 311 (523)
Q Consensus 246 ~~~~~~~~a~~l~~~~~l~~~~~l~E~~~---~~~~~~------~~~~~-----~~~~~~~~L~~~~~~~~~li~~~l~~ 311 (523)
+.+|-|+..+++....++++...+++.|. +...++ +.++. .+...+..+++--....++...+..+
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~ 283 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYF 283 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHH
Confidence 45566788888888888888888888877 222211 00000 01122333332111233444444444
Q ss_pred HHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCChHHHHHHHHHH
Q 009862 312 LQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGRRKLLLTTIPVL 387 (523)
Q Consensus 312 ~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GRR~lll~~~~l~ 387 (523)
+... ..+++.+|+|.++++. .|++. ..+..+++...++.+++.+++|+++|| +.+|...+....+.
T Consensus 284 ~~~l-v~~~~~~~lpl~l~~~--------~~~s~-~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 284 FLKL-VNYGFSYWLPLYLKSN--------GGYSE-LQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHhh-ccccHHHHHHHHHHcC--------CCcCh-HHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444 4788999999999981 23333 567778889999999999999999999 55665555544444
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc-chhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 388 IVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT-KVRGICIAICAMAYWICDIIVTYTL 466 (523)
Q Consensus 388 ~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~-~~Rg~a~gi~~~~~~lG~iig~~l~ 466 (523)
.+...+........ . .....++..........++....+++.... ..|-+..+.....+..++++++.+.
T Consensus 354 ~~~g~~~l~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 354 AIIGAISLLAAAVL-------P--GAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHHHHHHHHhhccc-------h--HHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 33332222111111 0 111111111111112222333334444444 4445555555555566666555554
Q ss_pred HHH-HHhhCchhHHH
Q 009862 467 PVM-LSSIGLAGAFG 480 (523)
Q Consensus 467 ~~l-~~~~G~~~~f~ 480 (523)
... ...++|...|.
T Consensus 425 ~~~~ap~y~~~~~f~ 439 (495)
T KOG2533|consen 425 RSLDAPRYGWGAVFY 439 (495)
T ss_pred ccccCcchhhhhHHH
Confidence 433 33456766763
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=95.02 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
.....+..+..++.++|++++||+.||+|||+++...++++++|.+++++... .++.......+.++..+.++..++
T Consensus 84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~---~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG---TTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC---CCCCcchhhHHHHHHHHhhccccC
Confidence 56677888999999999999999999999999999999999988885543221 112212234455566666777778
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----C-----------chhHHHHHHHHHHHHHH
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI----G-----------LAGAFGVYAVVCFISWV 491 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~----G-----------~~~~f~i~~i~~~i~~v 491 (523)
-.|+..++++|..-.+.||.-++...+...+|...+..+.-.+...+ + ||..+.+-++.+ +...
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa-~~~l 239 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPA-LLVL 239 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH-HHHH
Confidence 88999999999999999999988877766666665555544443321 1 444443333333 3333
Q ss_pred HhheeccCCCCCC
Q 009862 492 FVFLRVPETKGMP 504 (523)
Q Consensus 492 ~~~~~lpEtk~~~ 504 (523)
..-+.+|||+.-+
T Consensus 240 y~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 240 YFRLKMPETARYT 252 (538)
T ss_pred HhhhcCCcchhHH
Confidence 3445578987643
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.5e-06 Score=85.16 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=114.1
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
..-...|.+.+.+ +++. .++.++...+..++.+..+.++++.+|+|+|+-++.++.++++.+.++.-+..
T Consensus 31 l~diLip~l~~~f---------~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 31 LNDILIPHLKEVF---------DLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred cchhhHHHHHHHh---------CccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445566666554 4444 67788888999999999999999999999999999999999988887653222
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS------- 472 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~------- 472 (523)
.. .+..+++..+..+..........+.++..+.|++..+.-+.+...++.+|++++|.+...++.+
T Consensus 101 ~~-------~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 101 SK-------SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred hh-------hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 21 1122333222223333334445556778888888788889999999999999999999988763
Q ss_pred ------------hCchhHHHHHHHHHHHHHHHhh-eeccCCCC
Q 009862 473 ------------IGLAGAFGVYAVVCFISWVFVF-LRVPETKG 502 (523)
Q Consensus 473 ------------~G~~~~f~i~~i~~~i~~v~~~-~~lpEtk~ 502 (523)
..++.++...+..++++.+... ...|+.+.
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 1255566666666655555443 34465543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=92.80 Aligned_cols=170 Identities=11% Similarity=0.014 Sum_probs=101.0
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hhCC-hHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMD----VAGR-RKLLLTTIPVLIVSLI 392 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsD----r~GR-R~lll~~~~l~~i~~l 392 (523)
+..+..|++.|+.+ .+|++. .....+..+.-+...+..++.|+++| |+|| |+.++++.+.++++++
T Consensus 22 ~~~~~~~l~~yyt~--------v~Gls~-~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 22 IGIVYMYLMYYYTD--------VVGLSV-GLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred HHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 44556677777766 356666 56666677888899999999999999 5698 5566667766666655
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeeccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIF-PTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElf-P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
++...+.. ......+..++..+++..++.... ....++.+|+. ..+.|....++-..+..+|+++.+.+...+..
T Consensus 93 llf~~p~~---~~~~~~~~~~~~~~l~~~~~t~~~-ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~ 168 (473)
T PRK10429 93 LLFSAHLF---EGTAQYVFVCVTYILWGMTYTIMD-IPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN 168 (473)
T ss_pred HHHcCCCC---CccHHHHHHHHHHHHHHHHHHHHc-chHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322111 111111112222222323333332 33335668988 57899998888777778877777666554444
Q ss_pred hh-------CchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 472 SI-------GLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 472 ~~-------G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.. ++.....+++++.+++.+++++..||.
T Consensus 169 ~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 169 YVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 33 233444455555555555666656664
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=94.21 Aligned_cols=174 Identities=13% Similarity=0.042 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-----ChHH
Q 009862 305 VGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG-----RRKL 379 (523)
Q Consensus 305 i~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G-----RR~l 379 (523)
+...+.+.+ ... +.+...++.++.+ ++|++. ........+..+...+-. ++|.++||++ ||+.
T Consensus 30 ~~~~~y~~q-Gl~-~l~~~~~~~~l~~--------~lg~s~-~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~ 97 (468)
T TIGR00788 30 IGLQVLFVK-GIA-GLMRLPLSPMLTD--------DLGLDG-ARYQRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWY 97 (468)
T ss_pred HHHHHHHHh-hHH-HHhhhhhhHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHH
Confidence 333344443 333 4555556666664 355555 344444556667666654 5999999997 7777
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHH---HHHHHHHH
Q 009862 380 LLTTIPVLI-VSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGIC---IAICAMAY 455 (523)
Q Consensus 380 ll~~~~l~~-i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a---~gi~~~~~ 455 (523)
++++.++.. ++...+.... ......++.+++..+......+..-++..|..+ +.+... .++.....
T Consensus 98 l~~~~~l~~~~~~~~l~~~~---------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~ 167 (468)
T TIGR00788 98 LVLSGLLGSAILYGLLPGKV---------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGAS 167 (468)
T ss_pred HHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHH
Confidence 777765552 2222221100 011112222333333344444555567788888 444443 33333444
Q ss_pred HHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 456 WICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 456 ~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
.+|.++++.+.+.+.+.++|+..|++.+++.++. ++..+++||.+
T Consensus 168 ~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 168 ATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 5899999999999999999999998888777766 44455578764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-06 Score=85.71 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=116.3
Q ss_pred cHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 290 SWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMK 369 (523)
Q Consensus 290 ~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~ 369 (523)
....++++++.+...++.+++...+. .+..|++.|+.+. .|++. ..+....+.+..+.++|.+++.+
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~--------~g~~~-~~aa~~~s~~~~~~~vGRFig~~ 294 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEEL--------LGLNE-QQAAYYLSFFWVGFMVGRFIGSA 294 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhc--------CCccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777666665555555554433 5677889998872 33444 45566667888899999999999
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHH
Q 009862 370 LMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIA 449 (523)
Q Consensus 370 LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~g 449 (523)
++.|+...+.+.+.+++..+.++...+..... .+...++.+.+.....|..+....+..|. .-.. .|
T Consensus 295 lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-----------~~~~l~~ig~F~simfPTIfslal~~l~~-~ts~-~s 361 (422)
T COG0738 295 LMSRIKPEKYLAFYALIAILLLLAVALIGGVV-----------ALYALFLIGLFNSIMFPTIFSLALKNLGE-HTSV-GS 361 (422)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-----------HHHHHHHHHHHhHHHHHHHHHHHHhccCc-cccc-cc
Confidence 99999988888877766666555555443322 22333334445555556666666777773 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 009862 450 ICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 450 i~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~ 492 (523)
......-+|+.+.|.+.|++.+..|....+.+...+|.+..++
T Consensus 362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~ 404 (422)
T COG0738 362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLF 404 (422)
T ss_pred eeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2333456889999999999999999877777666666655533
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-06 Score=88.15 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceee
Q 009862 356 TTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILC 435 (523)
Q Consensus 356 ~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~ 435 (523)
..+..++.+++.|.++||+|||..++...+.+.+-.+++.+.. + +.++ ..-+.+.+. .......+++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~----------~~~~-~~~l~g~~~-~~~s~~~a~v 137 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-Y----------WFFL-LLGLSGGFS-AIFSVGFAYV 137 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-H----------HHhh-hcccccchh-hhhhhhhhhe
Confidence 4667788899999999999999999988777766655554332 1 1122 222222222 2334445788
Q ss_pred ecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q 009862 436 AEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 505 (523)
Q Consensus 436 aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~l 505 (523)
+++...+.|...+|+.+...+.+..++|.+.+.+....|...+|.+..+..++..++..+++||+...+.
T Consensus 138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 9999999999999999999999999999999999999999899999999999999999999999855443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=93.58 Aligned_cols=169 Identities=20% Similarity=0.154 Sum_probs=110.6
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hhCChHHH-HHHHHHHHHHHHHH
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMD----VAGRRKLL-LTTIPVLIVSLIIL 394 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsD----r~GRR~ll-l~~~~l~~i~~l~l 394 (523)
.+..|++.++.+ .+|+++ ....++..+..+...+..++.|+++| |+|||+.. +++.+..+++++++
T Consensus 19 ~~~~~~~~f~~~--------~~gl~~-~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 19 LLSSYLLYFYTD--------VLGLSP-ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh
Confidence 344455555555 345555 55666666778888899999999999 79976654 46767777766666
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT-KVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~-~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
....... ...........+..+++..++.... ....++.+|+.+. +.|....++-..+..+|.++...+.+.+.+..
T Consensus 90 f~~~p~~-~~~~~~~~~~~~~~~l~~~~~t~~~-i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~ 167 (428)
T PF13347_consen 90 FSPPPAG-LSFTAKLVWLFVFYILFDIAYTFVQ-IPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF 167 (428)
T ss_pred hccccch-hhhhhHHHHHHHHHHHHHHhhhhcc-CchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5331101 1111111122333333333333333 3334677999884 68999999999999999988888888877654
Q ss_pred C-------chhHHHHHHHHHHHHHHHhheeccC
Q 009862 474 G-------LAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 474 G-------~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
+ |.....+++++.+++.++.++..||
T Consensus 168 g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 168 GGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 3 6667777778888888888888888
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-06 Score=88.28 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=105.0
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCChHH-HHHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGRRKL-LLTTIPVLIVSLII 393 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GRR~l-ll~~~~l~~i~~l~ 393 (523)
..+..|+..++.+ .+|++. .....+..+.-+...+.-++.|+++|| +|||+. ++++.+.+++++++
T Consensus 26 ~~~~~~l~~fyt~--------~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 26 DNVMLYMMFFYTD--------IFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred HHHHHHHHHHHHH--------hhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 4455666666665 356666 566667778888899999999999996 687654 44566666666655
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-TKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
+...+. .+.........+..+++..++.....|- +++.+|+.+ .+.|++..++-..+..+|.++++.+...+...
T Consensus 97 lf~~p~---~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 97 AYSTPD---LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred HHhCCC---CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443321 1111111122222233333333333332 356678877 68899999999999999988888877666655
Q ss_pred hC-------chhHHHHHHHHHHHHHHHhheeccCC
Q 009862 473 IG-------LAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 473 ~G-------~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.| |.....+++++.+++.+++++..+|.
T Consensus 173 ~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 173 IGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 43 44455566666556655555555654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.2e-06 Score=80.51 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=92.5
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
..|.+..|.|++-+++|+ ++++...+.....++..++ ++.|.+.|++|.+.+++++.+...+....+..
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~----------sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGY----------SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred cccchhhhhHHHHHHhCC----------CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999888666 3356666677777777765 78899999999999999998888887776655
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhcc-ccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAY-GPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
...-. .. ..+. +.+.+..+.+..+.++ .......+...||. .||++.|+.-....+++.+...+.-.+...
T Consensus 86 ~~~~~-i~-~~~~--~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 86 AVSGR-IP-SLPV--WLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHhCc-cC-ccch--HHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 43222 11 1112 2222222222222222 22222334578985 799999999999999888877766555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6e-06 Score=83.67 Aligned_cols=141 Identities=18% Similarity=0.085 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
....+++....+++.+++..+|.++|++|||+.+.+...+.++..++-...+++. .+.++....++..++
T Consensus 113 ~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~----------~L~~f~~l~~~g~gg 182 (528)
T KOG0253|consen 113 GQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFA----------SLCVFRALWGFGVGG 182 (528)
T ss_pred hhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCee----------hhhHHHHHHhccCCC
Confidence 3445566677889999999999999999999999888887777666555444433 233333333333333
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.|...++-.|..|...|...+=+. ....+|.++...+.-.++.++||++..+...+...+.+++++ .+||.
T Consensus 183 -~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ES 253 (528)
T KOG0253|consen 183 -LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV-WVYES 253 (528)
T ss_pred -ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccC
Confidence 566556668999999999887666 777889999998888889999999887777755555555544 48887
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-05 Score=82.80 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=75.0
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+..+.+.++++ .+|.+. ....+......++.+++.++.+++.||++|+.... ...+.+..+.+...
T Consensus 223 ~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 291 (394)
T PRK11652 223 IAVFEACSGVLMGA--------VLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIP 291 (394)
T ss_pred HHHHHHhChHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33444556666665 244444 34444555666777788888888888887433222 22222221111111
Q ss_pred HhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 398 ETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
.... ....+.......++..+.+ ...+....++.|.+| +.++++.++.+....+|..+++.+.+.+...
T Consensus 292 ~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 292 GWFG----VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHhc----cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1000 0011122222222222222 234444455678787 5789999999999999999999888876543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-06 Score=82.55 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHH
Q 009862 307 VGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-GRRKLLLTTIP 385 (523)
Q Consensus 307 ~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-GRR~lll~~~~ 385 (523)
+.+++..|...+|.+..|+|.|+.+.|+ +. ..+.....+..+..++..+....+.+|. .+|+..+....
T Consensus 213 vtLfmGlqS~~~Y~~~~WLP~ili~~G~---------sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 213 VTLFMGLQSLLYYIVIGWLPAILIDRGL---------SA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCC---------CH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3344444555689999999999999666 33 6777777788999999999999999975 46777666666
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-cchhhHHHHHHHHHHHHHHHHHHH
Q 009862 386 VLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-TKVRGICIAICAMAYWICDIIVTY 464 (523)
Q Consensus 386 l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-~~~Rg~a~gi~~~~~~lG~iig~~ 464 (523)
++.+..+.+.+.+... .+...+..+....+..++...++..-.. ++.-+.-.|+.+.++.+-+.++|.
T Consensus 283 ~~l~G~~G~~~~P~~~-----------~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 283 LMLVGLVGLLLAPGQL-----------PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHHHHHHHhhhhH-----------HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 6666655554433222 1111222222223333443344444333 455567778888888899999999
Q ss_pred HHHHHHHhhCc-hhHHHHHHHHHHHHHHHhhe
Q 009862 465 TLPVMLSSIGL-AGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 465 l~~~l~~~~G~-~~~f~i~~i~~~i~~v~~~~ 495 (523)
++|++.|..|. ......++.+.++..++.+.
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999874 44444455555555544444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-06 Score=87.12 Aligned_cols=69 Identities=10% Similarity=-0.081 Sum_probs=48.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGR-RKLLLTTIPVLIVSLIILV 395 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~lll~~~~l~~i~~l~l~ 395 (523)
+.....+++.++.+ ++|++. ....++..+..++.+++.++.|+++||+|| |+++.++.++..++.....
T Consensus 18 ~~~~~~~l~~~l~~--------~~g~s~-~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 18 WGSWLVTLGSYMSK--------TLHFSG-AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 33444566666654 345555 577788889999999999999999999965 7677776666655554444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=92.04 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=91.4
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccch-hhhHHHHHHHHHHH
Q 009862 341 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISP-VLKAGISTACVIIY 419 (523)
Q Consensus 341 lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~-~~~~~~~~i~~~~~ 419 (523)
+|+++ ....+...+..++.+++..+.+++.+|++.|+++.++.++.+++.+...+......... ....+......++.
T Consensus 283 lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 283 LPGGP-SFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred CCCCc-chhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 55666 45556666777999999999999999999999999888877766544321110010000 01111222223333
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
..+++..+.+. ..+++++.|++.+++..++.+.+.++|..+++.+++.+.+.+|
T Consensus 362 ~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 362 EVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444455555 4667899999999999999999999999999999999999887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00011 Score=77.70 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=77.7
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
.++.+..+.|.++++. +|++. ....+.......+.+++..+.+++.++..+++.+.....+..++.+++.+
T Consensus 233 ~~~~~~~~~P~~l~~~--------~g~s~-~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~ 303 (413)
T PRK15403 233 PMMSWVAVSPVILIDA--------GGMTT-SQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIV 303 (413)
T ss_pred HHHHHHHhChHHHHHh--------cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3556667789888773 44555 34444555556666776777777654444433332222222222222222
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-TKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL 475 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~ 475 (523)
..... .. ..+..++..+++..+.+... +..... + +.+ ...+|++.++.+.....+..+++...+++... +.
T Consensus 304 ~~~~~-~~---~~~~~~~~~~l~~~G~~~~~-p~~~~~-a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~ 375 (413)
T PRK15403 304 GNLLW-PH---VWLWSVLGTSLYAFGIGLIF-PTLFRF-T-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GG 375 (413)
T ss_pred HHHHc-cc---cHHHHHHHHHHHHHHHHHHh-HHHHHH-H-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 11001 00 01111222222222222222 222111 1 122 22479999999888888888888888877665 44
Q ss_pred hhHHHHHHHHHHHH
Q 009862 476 AGAFGVYAVVCFIS 489 (523)
Q Consensus 476 ~~~f~i~~i~~~i~ 489 (523)
...|....+++.+.
T Consensus 376 ~~~~~~~~~~~~~~ 389 (413)
T PRK15403 376 RLPFHLLAVVAGVI 389 (413)
T ss_pred chHHHHHHHHHHHH
Confidence 55555555544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-05 Score=81.80 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=67.1
Q ss_pred hhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh----CChHHH-HHHHHHHHHHHHH
Q 009862 319 NGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA----GRRKLL-LTTIPVLIVSLII 393 (523)
Q Consensus 319 ~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~----GRR~ll-l~~~~l~~i~~l~ 393 (523)
..+..|++.|+++ .+|++. .....+..+..+...+..++.|+++||. |||+.+ +++.+...++.++
T Consensus 25 ~~~~~~l~~y~~~--------~~gl~~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 25 AMGALFLLSYYTD--------VAGVGA-AAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred HHHHHHHHHHHHH--------HcCCCH-HHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 3444555566665 355655 5677777788999999999999999996 777654 4554444444333
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-cchhhHHHHHHHHHHHHH
Q 009862 394 LVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-TKVRGICIAICAMAYWIC 458 (523)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-~~~Rg~a~gi~~~~~~lG 458 (523)
+...+. . .......+..+....++..+++....|. .++..++.. .+.|....++-.....++
T Consensus 96 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~r~~~~~~r~~~~~~~ 158 (448)
T PRK09848 96 VFWVPT-D-WSHSSKVVYAYLTYMGLGLCYSLVNIPY-GSLATAMTQQPQSRARLGAARGIAASLT 158 (448)
T ss_pred HHhCcC-C-CCcchHHHHHHHHHHHHHHHHHHhcccH-hhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 322110 1 1111111112222223333333332222 234455544 456877666654444443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=81.60 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=112.9
Q ss_pred CCchhHHHhhhhhhhhhhhhhhhcCCCCCCCCCCCccc---ccCcccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhh
Q 009862 247 EEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSET---ASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLY 323 (523)
Q Consensus 247 ~~~~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~~~~~---~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~ 323 (523)
+.|.+...+++..++++..+...+|.++....+...+. ....+.|++++.-..-+.+.+..+..+..++. ...+.+
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv-~Gs~sw 265 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV-IGSLSW 265 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHh-ccccch
Confidence 34455666777777777777777776654322222221 12233455554311002222222222333332 456677
Q ss_pred chHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh----HHHHHHHHHH----HHHHHHHH
Q 009862 324 YTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR----KLLLTTIPVL----IVSLIILV 395 (523)
Q Consensus 324 ~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR----~lll~~~~l~----~i~~l~l~ 395 (523)
|.|.++...- +-.+.+. ....++..++..++.+|.+++|.++||+-|+ ....+..+.+ .++...+.
T Consensus 266 w~p~~~~~~~-----~~~~~~~-~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~ 339 (493)
T KOG1330|consen 266 WAPAFIYYSY-----ELIGFDH-NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLF 339 (493)
T ss_pred hhhhHHHHHH-----HHhCCcc-ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHH
Confidence 8887765421 1123333 4566677788899999999999999994321 1111111111 11111111
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI-CDIIVTYTLPVMLSSI- 473 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l-G~iig~~l~~~l~~~~- 473 (523)
..... .....+..++++++........+.+.. -+..|+.|++.|.+++++..++..+ |.+-+|++.|.+.+.+
T Consensus 340 ~~~~~----~~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 340 LFPAF----TSSSMIFGLILFLVGETISWFNWATNN-PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred HHHhh----hhHHHHHHHHHHHHHHHHHhccccccc-ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 11111 111111222222222223333444444 3448999999999999998666654 5556666889888765
Q ss_pred Cch
Q 009862 474 GLA 476 (523)
Q Consensus 474 G~~ 476 (523)
|+.
T Consensus 415 g~~ 417 (493)
T KOG1330|consen 415 GYK 417 (493)
T ss_pred CCC
Confidence 444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=74.28 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
.+...+.....+...+...+.|.++||+|||+.-++.+++.+++++.... +++. .+++-.++.+.....
T Consensus 69 ~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~----------~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 69 HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYP----------VLLLGRVLGGIATSL 137 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccH----------HHHHHHHHHHHHHHH
Confidence 34444444566677778888999999999999888877777777664322 2222 333333333333222
Q ss_pred -cccccceeeecc----cCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCc--hhHHHHHHHHHHHHHHHhheecc
Q 009862 427 -YGPIPNILCAEI----FPTKVRGICIAICA-MAYWICDIIVTYTLPVMLSSIGL--AGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 427 -~~~i~~~~~aEl----fP~~~Rg~a~gi~~-~~~~lG~iig~~l~~~l~~~~G~--~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
+.+.=.-++.|. +|.+..+...+... ..+.+-++++..+.-.+.+..+. ..+|....++.+++++++....+
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 222222233554 55555555555444 23344556666666677776654 55676666666677776666667
Q ss_pred CCCCC
Q 009862 499 ETKGM 503 (523)
Q Consensus 499 Etk~~ 503 (523)
|..+.
T Consensus 218 ENyg~ 222 (354)
T PF05631_consen 218 ENYGD 222 (354)
T ss_pred ccCCC
Confidence 87654
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.9e-05 Score=82.80 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=103.4
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+|++...+..|+.+ .++++......... .+....-+..+++|+++|+ +||++.++++.++..+..+++.+
T Consensus 3 yYGm~aiLvlYl~~--------~lg~~~~~A~~i~~-~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 3 YYGMRTILVLYFLN--------FLGFSESTSTVLFH-TFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred eeecHHHHHHHHHH--------HcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555444 25555544444444 4444445667788999996 79999999888887777766654
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK---VRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~---~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
..... ...... ....++.+.+..+...++-+...+...+.++.+ .|-....++.++.++|+++++.+.+++....
T Consensus 74 ~a~~~-~~~~~~-~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 74 GAIPS-SGHPLH-DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred ccCcc-cccchH-HHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32111 000111 111222233333444445566667778888753 4778888999999999999999999987543
Q ss_pred -------CchhHHHHHHHHHHHHHHHhh
Q 009862 474 -------GLAGAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 474 -------G~~~~f~i~~i~~~i~~v~~~ 494 (523)
+|...|.+.+++++++.++..
T Consensus 152 ~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 152 GCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 577777777777666655543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.3e-05 Score=78.91 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=72.9
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG-RRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G-RR~lll~~~~l~~i~~l~l~~ 396 (523)
+.....|.|.++++.|+ +. .+...+.++..+..+++.+++|+++||.+ +|+++.++.++.++.++....
T Consensus 18 ~G~~~p~~~~~L~~~G~---------s~-~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGF---------SG-TQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHhCCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999998665 33 67777788889999999999999999987 456666665655555444433
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYT 465 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l 465 (523)
...+. ..+.+.+++ .++.....|+..+++.+... .++.-+|-.-+.+.+|-+++...
T Consensus 88 ~~~f~---------~~~~~~~l~-~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 88 SSSFW---------WLFVIMLLF-SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred hccHH---------HHHHHHHHH-HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 22222 222222222 33333334444444333333 23333444445555665555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=78.17 Aligned_cols=170 Identities=17% Similarity=0.147 Sum_probs=110.8
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCCh-HHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGRR-KLLLTTIPVLIVSLI 392 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GRR-~lll~~~~l~~i~~l 392 (523)
+..+..|+..++.+ ..|++. ..+..+..+.-+...+.-++.|.++|| +||| +-++++.+..++..+
T Consensus 28 ~~~~~~yLl~fYTd--------v~Gis~-~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 28 FGIVVLYLLFFYTD--------VFGLSA-ALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred HHHHHHHHHHHHhc--------ccCCcH-HHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 34556777777776 467767 455556667778888999999999996 6765 455566666666666
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFP-TKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP-~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
++...+... .........+...++..++.....|-. ++.+|+.+ ++.|.+..++-..+..+|.++...+.+.+..
T Consensus 99 l~F~~p~~~---~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 99 LLFITPDFS---MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred HHHcCCCcc---cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544322 112222233333444445554444433 55677765 4789999999999999999999999988887
Q ss_pred hh-------CchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 472 SI-------GLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 472 ~~-------G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+ |+.....+++++.++..+++++-.+|.
T Consensus 175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55 444455566666666666666656554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00018 Score=77.84 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-----hHHH--HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHH
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGR-----RKLL--LTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCF 423 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GR-----R~ll--l~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 423 (523)
++.++..+.-++..++..++..+.+| +... .+++++.+++++.+.+..... ..........++...++..+.
T Consensus 316 ~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~~~~g 394 (475)
T TIGR00924 316 WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLFQTLG 394 (475)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHHHHH
Confidence 44445555555555554443334433 3333 566777776666655432221 111111222334444444555
Q ss_pred hhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 424 VAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 424 ~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
-....|....++.+..|++.|++.+|+......+|..+++.+........++.+.+....+++++++++.++..|
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888999999999999999999999999999888887776667777787777777777666655444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-05 Score=81.03 Aligned_cols=188 Identities=11% Similarity=0.001 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGR-RK 378 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~ 378 (523)
||.+.+..+.+++... .+..+..-.-.|++++ +.+-+. ...+++.+...++.+++.+++|+...|.++ |+
T Consensus 33 wrsi~l~~~~sfl~~v-~~sI~~~s~wpYl~~l-------D~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~ 103 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAV-QFSIYLTSMWPYLQKL-------DPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK 103 (488)
T ss_pred hHhHHHHHHHHHHHhh-hheEEEeecchhhhhc-------CCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCccc
Confidence 4555555555554433 2334444444555552 122222 456677778999999999999999999985 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC 458 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG 458 (523)
.+++++++++++.++........ +.+..++++.-+.++++.+...+.-.|++...-.+.|.++++..+...-+|
T Consensus 104 Pli~s~ii~~~g~llY~~l~~~~------~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAYVP------NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 67778888877777663332222 101223333333344444555566677788777778888888888877888
Q ss_pred HHHHHHHHHHHHHhh--C-----------chhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 459 DIIVTYTLPVMLSSI--G-----------LAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 459 ~iig~~l~~~l~~~~--G-----------~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.++||.+.+.+.... | +..+-|+.+++.++..++.+++++|...
T Consensus 178 ~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 888887766654311 1 2335567777777777777777777533
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.9e-05 Score=79.13 Aligned_cols=160 Identities=18% Similarity=0.099 Sum_probs=87.2
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH--
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV-- 395 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~-- 395 (523)
+.....+.|.++++ ..|++. .+...+.++..+..++..++.|.++||+|.|+-++..+.+..+....+.
T Consensus 23 ~gi~~pF~~iWL~~--------~~GLs~-~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~ 93 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQ--------VAGLSG-TEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY 93 (412)
T ss_dssp HHHHHHHHHHHHHH--------HH---H-HHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcc--------ccCCCH-HHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888876 244455 5667777788899999999999999999966555444333222211111
Q ss_pred -HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 396 -ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT---KVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 396 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~---~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
+.+... .+ ..+..++....++..+.+...+ .|.+-. +..+.-+|=.-+.+.+|-+++..+.|.+.+
T Consensus 94 v~~pll~-----~n---~~lg~iig~i~l~~~f~~~~~~--~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~ 163 (412)
T PF01306_consen 94 VFGPLLQ-----SN---FWLGAIIGGIYLGLVFNAGVPL--SEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN 163 (412)
T ss_dssp THHHHHH-----TT----HHHHHHTTTTTTTTTTTHHHH--HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HH---HHHHHHHHHHHHHHHHcccchH--HHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence 111111 00 1111222222223333333222 243221 234555677778889999999999998887
Q ss_pred hhCchhHHHHHHHHHHHHHHHhheec
Q 009862 472 SIGLAGAFGVYAVVCFISWVFVFLRV 497 (523)
Q Consensus 472 ~~G~~~~f~i~~i~~~i~~v~~~~~l 497 (523)
. +....|++..+..++..++.++..
T Consensus 164 i-~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 164 I-NPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred e-CccHHHHHHHHHHHHHHHHHHHcC
Confidence 4 334566665555555544444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.8e-05 Score=77.37 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhh
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGR-RKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVA 425 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 425 (523)
..+.....+..++++++..+.|.+.||... |.++++......++.+.+....... ...+.+...+...+++..
T Consensus 301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~------~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL------GDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC------CceEehhhhHHHHHHhhc
Confidence 466677778888899999999999999875 3344444444333322222111111 111234444555667777
Q ss_pred ccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----chhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 426 AYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG----LAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 426 ~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G----~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+..|+..-+..|..=+..-++..|+.++.+.+-+++-.++.+...+..+ +...-++....+.+..++..++.|.-+
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 8888888888887555556778899999999988888888888887766 333344444445555555555555544
Q ss_pred CCCHH
Q 009862 502 GMPLE 506 (523)
Q Consensus 502 ~~~le 506 (523)
++..|
T Consensus 455 R~~~e 459 (480)
T KOG2563|consen 455 RLRAE 459 (480)
T ss_pred hHhhh
Confidence 44443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00041 Score=70.65 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=107.6
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
.+...++.+-.+ +|++. ..+.+++++..++..+..++..++..|+|-++.+.+++++.++..++=.....
T Consensus 30 svgPLL~~Ir~~---------~gls~-s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~ 99 (395)
T COG2807 30 SVGPLLDEIRQD---------LGLSF-SVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGL 99 (395)
T ss_pred hhhhhHHHHHHH---------hcccH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 444445555544 55555 67778888888888999999999999999999988887776666554322111
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CchhH
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI-GLAGA 478 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~-G~~~~ 478 (523)
+ .++....+.++.....+.+...++-+-||.+ -+..+|++.+...+++.+++.+...+..+. ||+..
T Consensus 100 ----------~-~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a 167 (395)
T COG2807 100 ----------P-LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA 167 (395)
T ss_pred ----------H-HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence 1 2222222333333333444445667888876 588999999999999999999999998877 79999
Q ss_pred HHHHHHHHHHHHHHhh
Q 009862 479 FGVYAVVCFISWVFVF 494 (523)
Q Consensus 479 f~i~~i~~~i~~v~~~ 494 (523)
..+.+..+++..++.+
T Consensus 168 L~~WAl~allAl~~Wl 183 (395)
T COG2807 168 LGFWALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9888888877765543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=74.77 Aligned_cols=148 Identities=17% Similarity=0.145 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhh
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT-TIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVA 425 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~-~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 425 (523)
+......++..+...+..++.|-++|+-++|+.++. ...++.++.+++.+...-. .+...++.++...++.
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~-------~~~~~~l~iia~v~~~- 141 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQ-------WWLALVLFIIANVGYE- 141 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcch-------HHHHHHHHHHHHHHHH-
Confidence 334556677788888888999999999997766554 4444444555444331111 1122222222222222
Q ss_pred ccccccceeeecccCcchh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 009862 426 AYGPIPNILCAEIFPTKVR--------------------------GICIAICAMAYWICDIIVTYTLPVMLSSI------ 473 (523)
Q Consensus 426 ~~~~i~~~~~aElfP~~~R--------------------------g~a~gi~~~~~~lG~iig~~l~~~l~~~~------ 473 (523)
.......++..|+.+.+.+ ++..+.....+.+|+++.-.+.-.+....
T Consensus 142 ~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~ 221 (477)
T PF11700_consen 142 ASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASN 221 (477)
T ss_pred HHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2334445677888888777 88899988888999888777655544322
Q ss_pred --CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 474 --GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 474 --G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
..+..+.+.++..++..+..++++|+.++
T Consensus 222 ~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 222 TWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 23556777777777777777888888754
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.7e-05 Score=82.56 Aligned_cols=134 Identities=9% Similarity=0.138 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPI 430 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 430 (523)
...++...+.++..++.++|..|+|+-+++..++.+..+=++.+....+.+ ..+.+=++-.......+..+
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W---------~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW---------MVLPIEILQGITHALIWAAI 480 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch---------heeeHHHHHHHHHHHHHHHH
Confidence 455566677888999999999999999999888877777666555444433 33333333334444444444
Q ss_pred cceeeecccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhh
Q 009862 431 PNILCAEIFPTKVRGICIAICAM-AYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 431 ~~~~~aElfP~~~Rg~a~gi~~~-~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~ 494 (523)
. +|++...|++.|+++.++... ...+|-.+|.++++.+...+|.+..|.++++.|++..++..
T Consensus 481 ~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 481 I-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred H-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 3 777899999999999999854 45688889999999999999999999999888877665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00036 Score=75.76 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChHH-------HHHHHHHHHHHHHHHHHHHh-hhccchhhhHHHHHHHHHHHHHH
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVAGRRKL-------LLTTIPVLIVSLIILVISET-LQLISPVLKAGISTACVIIYFCC 422 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~GRR~l-------ll~~~~l~~i~~l~l~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 422 (523)
.+..+..+..++..++.+++.||++||+. +.+++++.+++++.+++... ....+...+.+. ++...++.++
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~l~g~ 391 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWF-IVLVYLFQSL 391 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHHHH
Confidence 33445555666778888999999998863 66676666666554432211 110111122222 2333333344
Q ss_pred HhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------h---h-CchhHHHHHHHHHHHHHHH
Q 009862 423 FVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS------S---I-GLAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 423 ~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~------~---~-G~~~~f~i~~i~~~i~~v~ 492 (523)
......+....++....|.+.++.++|+.++...+|+.++..+...... . . .+.+.|...++++++++++
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445556656777788999999999999999999999998887765421 0 1 1345566666666666555
Q ss_pred hheec
Q 009862 493 VFLRV 497 (523)
Q Consensus 493 ~~~~l 497 (523)
.++..
T Consensus 472 ~~~~~ 476 (489)
T PRK10207 472 MALMV 476 (489)
T ss_pred HHHHH
Confidence 55433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=74.20 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
+.+.+.++++.+.+++..+.+.|+.|++|-|..++++....++...+=.+...-. ........+.... ..........
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~-v~~~f~~~l~~~G-q~iaa~Aq~F 156 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF-VPPLFRRPLTHTG-QSIAAAAQPF 156 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc-ccccchhhhhHHh-HHHHHHhhhH
Confidence 6778889999999999999999999999999999988888877766543322110 0000000011111 1111222222
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
...++.-+..-+||+++|+++..+..+..-+|..++..+-|.+....
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 22333344456799999999999999999999999999888887644
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=78.83 Aligned_cols=146 Identities=8% Similarity=0.053 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 351 LISAFTTFLMLPCIGVAMKLMDVA----GRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 351 l~~~i~~l~~lig~~l~g~LsDr~----GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
++..+..+..++..++..++-.|. +.+..+.+++++++++++.+.............+.+ ..+...++.++....
T Consensus 320 ~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~-~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 320 QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVN-WLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HHHHHHHHHHHHHHH
Confidence 344455555555555554444444 444667778888888877766554432111112222 334444444555566
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhCchhHHHHHHHHHHHHHHHhhee
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS----------SIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~----------~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
..|+...++.+..|++.||+++|+..+...+|..++..+...... ..++.+.|..+++++++++++.++.
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788899999999999999777777777777666642210 1124566666666666555544443
Q ss_pred c
Q 009862 497 V 497 (523)
Q Consensus 497 l 497 (523)
.
T Consensus 479 ~ 479 (500)
T PRK09584 479 A 479 (500)
T ss_pred H
Confidence 3
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0032 Score=65.46 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=104.7
Q ss_pred CcccHHHHhccchhhHHHHHHHHHHHHHhhhhhhhhhchH-HHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHH
Q 009862 287 KGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTP-QILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIG 365 (523)
Q Consensus 287 ~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p-~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~ 365 (523)
....|+.+...+.-+++++.+++..+. +++. .+++-+|- +-+|++. ..+..++.+...+.+++..
T Consensus 197 f~~a~~~~~~~~~a~~f~~fl~l~t~a---------~~~QD~iLEPygg----~Vfgmsv-~eTT~Lta~~~~G~L~G~~ 262 (403)
T PF03209_consen 197 FREAWRQVWASPQARRFFVFLFLGTLA---------FFMQDVILEPYGG----EVFGMSV-GETTRLTAFWGGGTLLGML 262 (403)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHH---------HHhhHHHcCCchh----HHcCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 334566777666666666665554432 2222 23444432 2477777 5666677788899999999
Q ss_pred HHHHHHH-hhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchh
Q 009862 366 VAMKLMD-VAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVR 444 (523)
Q Consensus 366 l~g~LsD-r~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~R 444 (523)
+.+++.. |.+++++..+++.++++++.++.+..... +.+.....+++++...+...... -..+.++...+..
T Consensus 263 ~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~------~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~a 335 (403)
T PF03209_consen 263 LAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG------SPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRA 335 (403)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcch
Confidence 9998877 67788887788888877777665543322 12223333333322222221111 1234677778889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 445 GICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 445 g~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
|+.+|.......++..++..+.+.+.|.
T Consensus 336 G~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 336 GLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988763
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0045 Score=68.18 Aligned_cols=114 Identities=11% Similarity=-0.056 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcc
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGR-RKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAY 427 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GR-R~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 427 (523)
..+.+....++..++.++.+.+..+++| |..++++.+++.+++-+++... ..... . .+. +.++.+++....
T Consensus 351 ~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~----~~n~~-~--~i~-~~~l~g~giG~~ 422 (599)
T PF06609_consen 351 IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR----PDNKN-A--AIA-FLVLAGFGIGGI 422 (599)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc----CCCcc-h--HHH-HHHHHHHhHHHH
Confidence 3455566777778888889999998887 4455566555554444433221 11111 1 112 222222222222
Q ss_pred ccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 428 GPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML 470 (523)
Q Consensus 428 ~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~ 470 (523)
.....+.+.-..|++.-+++.|+...+..+|+.++..+...+.
T Consensus 423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 423 LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2233345566789999999999999999999988887765443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=73.22 Aligned_cols=141 Identities=15% Similarity=0.018 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhh
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAG--RRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVA 425 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~G--RR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 425 (523)
...+......+..+++..+.|.++||++ |-...+.++++.++++....++..+ ...|+....+.+.......
T Consensus 307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~------~~L~vp~~~l~~~i~~~da 380 (464)
T KOG3764|consen 307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI------AQLWVPNFGLGFGIGLADA 380 (464)
T ss_pred ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH------HHHhhhhHHHHHHHHHHHH
Confidence 4444555667888999999999999999 5444444545445444444433322 2333333444444444444
Q ss_pred ccccccceeeecccCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhe
Q 009862 426 AYGPIPNILCAEIFPTK---VRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 426 ~~~~i~~~~~aElfP~~---~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~ 495 (523)
...|...- +.+.--.+ +-|..+++....+.+|.+++|.+.+.+...+|+.|...++++..++.+-++.+
T Consensus 381 sl~P~l~~-lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 381 SLIPTLGY-LVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHhhhhHH-hcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444422 23332333 67899999999999999999999999999999999988888888777655544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00067 Score=54.10 Aligned_cols=62 Identities=24% Similarity=0.299 Sum_probs=50.2
Q ss_pred hhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPV 386 (523)
Q Consensus 315 ~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l 386 (523)
+++...+..|.|.++++.|+ +. ....++..+..+..+++.+++|+++||++|++..+....+
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl---------~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGL---------SP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 44566788899999998666 33 6778888899999999999999999999998877655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0059 Score=68.47 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=47.1
Q ss_pred HhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhCC--hHHHHHHHHHHHHH
Q 009862 314 QFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTF-LMLPCIGVAMKLMDVAGR--RKLLLTTIPVLIVS 390 (523)
Q Consensus 314 ~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l-~~lig~~l~g~LsDr~GR--R~lll~~~~l~~i~ 390 (523)
....++++..|+|.++++ .+|++.. .+.++..+..+ +.+++.+++|+++||+++ |+++.+++++..+.
T Consensus 342 ~~~~~~~~~~~lP~yl~~--------~~g~s~~-~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 342 DSLAFNGYITFLPKYLEN--------QYGISSA-EANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHHHHHHHHHHH--------HcCCcHH-HHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 334577888999999986 4666664 44444444443 668999999999999984 45555555555554
Q ss_pred HH
Q 009862 391 LI 392 (523)
Q Consensus 391 ~l 392 (523)
++
T Consensus 413 ~~ 414 (633)
T TIGR00805 413 YL 414 (633)
T ss_pred HH
Confidence 33
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0051 Score=59.70 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcc
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAY 427 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 427 (523)
...+......+...++.++.|+++||+|||+.++.+.....+..+...+... .....++......+......
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN--------VGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc--------chHHHHHHHHHHHHhhhHHH
Confidence 3455666777777788899999999999997777766543333222222111 11112222222233333345
Q ss_pred ccccceeeecccCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHHHHh--hCchhHHHHHHHHH
Q 009862 428 GPIPNILCAEIFPT-KVRGICIAICAM-AYWICDIIVTYTLPVMLSS--IGLAGAFGVYAVVC 486 (523)
Q Consensus 428 ~~i~~~~~aElfP~-~~Rg~a~gi~~~-~~~lG~iig~~l~~~l~~~--~G~~~~f~i~~i~~ 486 (523)
.+....+..|.+|. ..|+...++... ...++.++++.+.+.+... .+|+..+.+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 56666778899988 678888888877 5777888888666666544 46666444444333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0023 Score=70.66 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhc-CchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQA-GVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR-- 377 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~-G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR-- 377 (523)
..+++.++..++...++ ..+...+-+|.+.+ |.+ .+.+....+.++.++++.+|.+..|++....-||
T Consensus 353 ~d~Wll~~~~~cg~g~g-l~~~~N~~qI~~sl~g~~--------~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~ 423 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAH-FVIIFNARFIYTALAGEA--------PDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRA 423 (591)
T ss_pred hhHHHHHHHHHHhhCch-heeeecHHHHHHHhcCCC--------CCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhcc
Confidence 44555555555444443 45667778888775 331 1111122255677888888888888777322222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHH
Q 009862 378 ------KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAIC 451 (523)
Q Consensus 378 ------~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~ 451 (523)
++.+....++.+..+++++.... ....+..++.+.+++..+.... ..++|+|. +.-|+-+-++
T Consensus 424 ~~r~prt~~l~~~~~~~~~~lll~~~~p~---------~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~ 492 (591)
T PTZ00207 424 EDRVPITIALFIPSVCIITMLTLFLTLPK---------AALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFC 492 (591)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHCCc---------cHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHH
Confidence 22222222233333333322110 1233444444445555544444 55799999 8889988888
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhh-------------CchhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 452 AMAYWICDIIV-TYTLPVMLSSI-------------GLAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 452 ~~~~~lG~iig-~~l~~~l~~~~-------------G~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
....-+|+++. ..+.|.+.|.- +++.+|++++++|++..+......-+|+.
T Consensus 493 ~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 493 FLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 88888888777 56777776532 46678999999998888877666556653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=65.68 Aligned_cols=137 Identities=17% Similarity=0.076 Sum_probs=79.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-----ChHHHHHH-HHHHHHHHHHHHHHHhhhcc---chhhhHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG-----RRKLLLTT-IPVLIVSLIILVISETLQLI---SPVLKAG 410 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G-----RR~lll~~-~~l~~i~~l~l~~~~~~~~~---~~~~~~~ 410 (523)
+++++. ........+..+. .+..+.+|+.+|+.+ ||..+++. .++++....+..+....... ....+.+
T Consensus 9 EL~vpA-~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 9 ELGVPA-WLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HhccHH-HHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 445544 3333333344333 467889999999998 88777654 33333333333222211101 1111222
Q ss_pred HHHHHHHHHHHHHh---hccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 411 ISTACVIIYFCCFV---AAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 411 ~~~i~~~~~~~~~~---~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
.......+.+..++ ........++++|..|++.|+++.++.....-+|.+++..+.+.+++.+.....
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 22222222222222 222334456779999999999999999999899999999999999887754433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=68.01 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=92.5
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA-----GRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTA 414 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-----GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i 414 (523)
++|+++. ....+..+..+-. ..-++.|.++|-+ .||+-++++.++.+++.+.++..+... .......+
T Consensus 19 ~l~ls~~-~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-----~s~~~~~~ 91 (433)
T PF03092_consen 19 DLGLSPA-QLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-----SSAAIAVV 91 (433)
T ss_pred HcCCCHH-HHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-----chhhhHHH
Confidence 4566664 3333333443333 4567889999975 356666667766655555554433211 11111122
Q ss_pred HHHHHHHHHhhccccccceeeeccc---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 009862 415 CVIIYFCCFVAAYGPIPNILCAEIF---PTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWV 491 (523)
Q Consensus 415 ~~~~~~~~~~~~~~~i~~~~~aElf---P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v 491 (523)
++++. .+.......+.-++++|.. |.+ |+.-.+++..+..+|++++..+.|.+.+..+.+..|.+.+++..+..+
T Consensus 92 ~l~la-~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 92 LLFLA-SFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHH-HHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 22222 2222222333334445653 545 888889999999999999999999999999998899888888777776
Q ss_pred HhheeccCC
Q 009862 492 FVFLRVPET 500 (523)
Q Consensus 492 ~~~~~lpEt 500 (523)
..++..+|.
T Consensus 170 ~~~~~~~e~ 178 (433)
T PF03092_consen 170 VALFLLEER 178 (433)
T ss_pred HHHHhhhhc
Confidence 666666763
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0067 Score=55.25 Aligned_cols=143 Identities=7% Similarity=-0.028 Sum_probs=84.8
Q ss_pred HHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 009862 311 ILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVS 390 (523)
Q Consensus 311 ~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~ 390 (523)
++..++++.........+++..+-. ..-+++. ........+......++.+++..+.+++|.|+.++++.+...+.
T Consensus 5 f~~~Ftaf~t~~~i~~svi~s~~~~---~~~~i~~-~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y 80 (156)
T PF05978_consen 5 FMFLFTAFQTQSFIQESVIHSVHER---NPSSISA-GLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY 80 (156)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhc---Ccccccc-cccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444445556556666666554210 0011222 23444555666677788888999999999999999888777665
Q ss_pred HHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 391 LIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPV 468 (523)
Q Consensus 391 ~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~ 468 (523)
.+....... +..+....+.+.+.+..+. ....++.+....+.|++-.++.-.+...+.++|..+.-.
T Consensus 81 ~~~~~~~~~----------~~l~~~s~l~G~~~a~lW~-aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 81 IASFFYPNS----------YTLYPASALLGFGAALLWT-AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHhhhH----------HHHHHHHHHHhhhhHHhhH-hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332211 1223333333333333333 333566787888889999998877777777777665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0082 Score=66.98 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG--RRKL 379 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G--RR~l 379 (523)
.+++.+++........+.++..|+|.|+++ ++|.++.....++..+...+..+|.+++|+++.|+- -|..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~--------Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~ 463 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLET--------QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA 463 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHH--------HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence 445555555555566688999999999988 678888666666666666778899999999999874 3444
Q ss_pred HHHHHHHHHHH
Q 009862 380 LLTTIPVLIVS 390 (523)
Q Consensus 380 ll~~~~l~~i~ 390 (523)
..+.++...++
T Consensus 464 a~~~~~~~~l~ 474 (735)
T KOG3626|consen 464 AKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=62.31 Aligned_cols=203 Identities=12% Similarity=0.137 Sum_probs=114.5
Q ss_pred hhHHHhhhhhhhhhhhhhhhcCCCCCCCCCC---------CcccccCcccHHHHhccchhhHHHHHHHHHHHHHhhhhhh
Q 009862 250 EYIQAAALVSQPALYSKELMDQHPVGPAMVH---------PSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGING 320 (523)
Q Consensus 250 ~~~~a~~l~~~~~l~~~~~l~E~~~~~~~~~---------~~~~~~~~~~~~~L~~~~~~~~~li~~~l~~~~~~~g~~~ 320 (523)
.+..+.+......+|.+..++|+...++... ..........++.+.+.+..|..+..++..++....-...
T Consensus 180 ~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~ 259 (463)
T KOG2816|consen 180 VFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGG 259 (463)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcC
Confidence 4456666666667777778888754333220 0000011112333444333444444344333322211111
Q ss_pred hhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 321 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAM-KLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 321 i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g-~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
..-..+.++. ..++.+....+.+.. .......++.++.. .+...+|-|++...++..-.+..+.+++...
T Consensus 260 ~~~~~~~yl~--------~~f~w~~~~~s~~~~-~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~ 330 (463)
T KOG2816|consen 260 ASDVLLLYLK--------AKFGWNKKEFSDLLS-LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE 330 (463)
T ss_pred ceeEEEEEEe--------eecCcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc
Confidence 1101122222 245666644444444 44555556665555 7888899888877887777777777776554
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 400 LQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
.+ .........++.....+...++++-+...+.+|++.++...+..+..+++|.+.+.+...
T Consensus 331 ~w-----------~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 331 TW-----------MMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred ch-----------hhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44 122222223334444555556667788899999999999999999999999998887643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.025 Score=61.35 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC--hH-----HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHH
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGR--RK-----LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCC 422 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GR--R~-----lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 422 (523)
.+..++..+.-++..++.+++=.|..| |. =+.+++++++++.+++.+.......+...+. .+++...++...
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~-~wl~~~~~~~t~ 389 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSL-PLMVLGLAVMGF 389 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCH-HHHHHHHHHHHH
Confidence 344556666666777777767666633 21 1556777777777666554433211121222 234444444556
Q ss_pred HhhccccccceeeecccCcchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 009862 423 FVAAYGPIPNILCAEIFPTKVRGICIAICAMAY-WICDIIVTYTLPVM 469 (523)
Q Consensus 423 ~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~-~lG~iig~~l~~~l 469 (523)
.-.+..|+..++++++.|++.|+..+|+..... .+|..++..+....
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788999899999999999999999975532 45555555544433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.034 Score=59.82 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhh--ccchh--h------------------hHHHHHHHHH
Q 009862 360 MLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQ--LISPV--L------------------KAGISTACVI 417 (523)
Q Consensus 360 ~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~--~~~~~--~------------------~~~~~~i~~~ 417 (523)
.++..++.+++++|++|++++-+......+..+++++..... ..++. . ..|. ..++.
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~-~~~FY 135 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWS-FALFY 135 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhh-HHHHH
Confidence 334478889999999999988877766666655555442211 00000 0 0111 11112
Q ss_pred HHHHHHhhccc-cccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 418 IYFCCFVAAYG-PIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 418 ~~~~~~~~~~~-~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
+..-.++.... -+.|.+++|++..++-.+-+++...+.++|.++++.+..++..
T Consensus 136 v~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 136 VMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333 3778899999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.059 Score=56.66 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++.+++.++..++..+ -..-.|+..|+..- ..|++..+...-+.-+..=..++..++...+.|.++.|++
T Consensus 4 ~~~~~llc~~gf~~~f---rPsEPfl~~yL~~~-------~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv 73 (412)
T PF01770_consen 4 KKITLLLCLFGFFKEF---RPSEPFLTPYLTGP-------DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV 73 (412)
T ss_pred hHHHHHHHHHHHHHhc---CCCCccchHHHcCC-------ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3555556666665544 34455666666541 2455554444334334444556667777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
++++.+...+..+++.+..... ...+.-++++..... -...++++=-..|++.--++.+.+....-+|.
T Consensus 74 iil~~~~~i~t~~lll~~~sv~---------~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~ 142 (412)
T PF01770_consen 74 IILQALSYIITWLLLLFGTSVL---------AMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGR 142 (412)
T ss_pred HHHHHHHHHHHHHHHHHHCcHH---------HHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHH
Confidence 9998887777777666544333 122222222222222 12222333334566666677888888888888
Q ss_pred HHHHHHHHHHHHhhCchhHHH-HHHHHHHHHHHHhheeccCC
Q 009862 460 IIVTYTLPVMLSSIGLAGAFG-VYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 460 iig~~l~~~l~~~~G~~~~f~-i~~i~~~i~~v~~~~~lpEt 500 (523)
+++..++..+...-+...... .....+...+++..+++|..
T Consensus 143 ~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 143 FISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888888777766433222222 22333333444444456654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0012 Score=69.26 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCC
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV----AGR 376 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr----~GR 376 (523)
+.++....+.+..+++ +..-..|.|.|+.++|++ . .....+-.+.-+..++..++.|..+|| +||
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvp---------h-k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVP---------H-KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCC---------c-ccccccccccccccceeccccccccccccccccc
Confidence 5566666666777774 566678888898887762 2 333344445556777888999999995 898
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHhhhc-cchh--h-----hHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhH-
Q 009862 377 RKLLLTTI-PVLIVSLIILVISETLQL-ISPV--L-----KAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGI- 446 (523)
Q Consensus 377 R~lll~~~-~l~~i~~l~l~~~~~~~~-~~~~--~-----~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~- 446 (523)
|+.++... +..++.++++.+...+.. .... . ...+.++.+.++=.......+|+= ++.++++....+.+
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~ 179 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTR 179 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhc
Confidence 87776554 444555555554443321 1111 1 111122222222233334445553 66788888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009862 447 CIAICAMAYWICDIIVTYTLP 467 (523)
Q Consensus 447 a~gi~~~~~~lG~iig~~l~~ 467 (523)
+.++...+..+|+.++-.+.+
T Consensus 180 Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 180 ANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cchhHHHHHHhcceeeeeccc
Confidence 888888888888877665554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0041 Score=66.42 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH-HhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS-ETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
.......+..++.+++..+...+.-+..-|+++.++.++.+++.+.-.+. ...+..-.....+..+.--++........
T Consensus 256 f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~ 335 (433)
T PF03092_consen 256 FYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIA 335 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHH
Confidence 33344456666667777766665555666777666655544433321110 00000000111111122222233333334
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
+.|.. .+++|++|+..-|+.+++...+.++|..++..++..+.+.++
T Consensus 336 ~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 336 FMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444 456899999999999999999999999999999999988776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0012 Score=72.26 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG--RRK 378 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G--RR~ 378 (523)
.++++...+..........++..|+|.|++. ++++++.....+...+...+.++|.+++|+++.|+. .|.
T Consensus 304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~--------QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~ 375 (539)
T PF03137_consen 304 NPVFMCLILAGVFESFIVSGFATFLPKYLES--------QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG 375 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence 3455555555555555678899999999987 678877655555555666678899999999999874 344
Q ss_pred HHHHHHHHHHHHHHH---HHH--HHhhhc------c------ch--------------------------h-hhHHHHHH
Q 009862 379 LLLTTIPVLIVSLII---LVI--SETLQL------I------SP--------------------------V-LKAGISTA 414 (523)
Q Consensus 379 lll~~~~l~~i~~l~---l~~--~~~~~~------~------~~--------------------------~-~~~~~~~i 414 (523)
++..+.+...++.+. +.+ ..+... . .. . ......++
T Consensus 376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl 455 (539)
T PF03137_consen 376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence 444444333333322 111 111000 0 00 0 00111111
Q ss_pred HH-HHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhC
Q 009862 415 CV-IIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYW-ICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 415 ~~-~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~-lG~iig~~l~~~l~~~~G 474 (523)
++ ++...+......|.. .+.-...|.+.|+.|+|+..++.+ +|.+-+|+++|.++|...
T Consensus 456 ~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 11 122222223333333 233467899999999999887776 477899999999998765
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0012 Score=72.36 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=1.1
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhcc---c--h---------
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLI---S--P--------- 405 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~---~--~--------- 405 (523)
.+++++ ..+.++.+.+-++.++..++..++..|..|-+.+-++.++++++.+++++....... . .
T Consensus 32 RF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 32 RFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 456666 677778888999999999999999988777677778888888887777653322100 0 0
Q ss_pred -----------------------hhhHH---HHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 406 -----------------------VLKAG---ISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 406 -----------------------~~~~~---~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
..... ..+++..++.++......++..+|+-|..+++.-+.-+|+......+|.
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 00011 1112222233333444566677888999999998899999888888888
Q ss_pred HHHHHHHHHHH
Q 009862 460 IIVTYTLPVML 470 (523)
Q Consensus 460 iig~~l~~~l~ 470 (523)
++|-.+++.++
T Consensus 191 a~Gf~lg~~~L 201 (539)
T PF03137_consen 191 ALGFLLGSFCL 201 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 87777776654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.29 Score=52.09 Aligned_cols=135 Identities=16% Similarity=-0.004 Sum_probs=83.2
Q ss_pred hhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Q 009862 320 GVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISET 399 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~ 399 (523)
.+...+..|+...|+ ++ ......-.+..+.++.+.++..++.+|+|-.+.-++++....+|+.+......
T Consensus 276 sf~~lmt~yl~~~G~---------s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~ 345 (432)
T PF06963_consen 276 SFGGLMTAYLKSQGY---------SP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFW 345 (432)
T ss_pred cCcHHHHHHHHHCCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 345556677776555 34 55566667788889999999999999999888877777766655554443222
Q ss_pred hhccch-hhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 009862 400 LQLISP-VLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYT 465 (523)
Q Consensus 400 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l 465 (523)
.. ..+ .......++..+++.=+.--++.....-++.|..|.+.||+..|+-+...++..++.-.+
T Consensus 346 ~~-~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 346 AP-GSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred cC-CCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22 111 111111222222222222223333444566899999999999999888888776654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.26 Score=53.92 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHHHHHHHHHHHhh
Q 009862 445 GICIAICAMAYWICDIIVTYTLPVMLS-SIGLAGAFGVYAVVCFISWVFVF 494 (523)
Q Consensus 445 g~a~gi~~~~~~lG~iig~~l~~~l~~-~~G~~~~f~i~~i~~~i~~v~~~ 494 (523)
+...|-.+.+..+|+++|+.++++++- .+|.....++.+.+.++++++.+
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 556777888899999999999988764 67876666666666555554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.082 Score=55.33 Aligned_cols=170 Identities=11% Similarity=0.004 Sum_probs=95.6
Q ss_pred hhhhchHHHHHhcCchhhhhc---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHH
Q 009862 320 GVLYYTPQILEQAGVEVLLSN---LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLT-TIPVLIVSLIILV 395 (523)
Q Consensus 320 ~i~~~~p~il~~~G~~~~~~~---lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~-~~~l~~i~~l~l~ 395 (523)
...++.|.|+++.- .+ ...+.+.......++..+...+-.++.|.++|+.|+|+..+. ...+..++.+.+.
T Consensus 33 vtt~ifply~~~~~-----~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~ 107 (438)
T COG2270 33 VTTFIFPLYFTSVA-----GAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLW 107 (438)
T ss_pred eeeehhHHHHHHHH-----hhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 34555666665521 01 223334445556667777777888889999999997665554 4444444545444
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH-H----
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVM-L---- 470 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l-~---- 470 (523)
+.+. . ..+...+++.+.......+......++..++.+++.-++..++....+.+|+.+.-.+.-.. +
T Consensus 108 ~i~~------~-s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~ 180 (438)
T COG2270 108 FIPP------G-SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQ 180 (438)
T ss_pred HhCC------C-chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccc
Confidence 4332 1 12223333333333333333445556778888877767777776666777766544432111 1
Q ss_pred -------------HhhCchhHHHHHHHHHHHHHHHhheeccCCC
Q 009862 471 -------------SSIGLAGAFGVYAVVCFISWVFVFLRVPETK 501 (523)
Q Consensus 471 -------------~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk 501 (523)
+....+.++.+.++..++..+-.++.+++..
T Consensus 181 ~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~ 224 (438)
T COG2270 181 TGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAE 224 (438)
T ss_pred cceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccc
Confidence 1123455677777777777777777776654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.063 Score=43.50 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=58.6
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
-+.+...+|.+.++.++ +. ....++.+.+.+++++|.+...++.++..+++.+..+.++..++++.+.+.
T Consensus 8 RFayTplLP~M~~~~~l---------s~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGL---------SL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888887655 33 678888889999999999999999999888888888888888888877765
Q ss_pred Hhh
Q 009862 398 ETL 400 (523)
Q Consensus 398 ~~~ 400 (523)
...
T Consensus 78 ~~~ 80 (85)
T PF06779_consen 78 HSF 80 (85)
T ss_pred hch
Confidence 543
|
Note that many members are hypothetical proteins. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.024 Score=58.43 Aligned_cols=123 Identities=16% Similarity=0.095 Sum_probs=68.6
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHH
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAG--RRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVI 417 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~G--RR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~ 417 (523)
.+|+++. +...+....++.+.+.........+|.. -+-.+..+..++.-..+.+..... .....+...
T Consensus 291 rfg~ss~-~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---------~~~l~~~s~ 360 (451)
T KOG2615|consen 291 RFGYSSM-QQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---------PVVLYLGST 360 (451)
T ss_pred ccCCChh-hheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---------chhhhHHHH
Confidence 4666664 4444444556666666665555666654 333333333222222222111110 111222223
Q ss_pred HHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 418 IYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 418 ~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
+..++ ++...+....++....|...||+..|+......++-++||.+.|.+..+.
T Consensus 361 l~sf~-~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 361 LKSFS-TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHH-HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 33222 22233333456678899999999999999999999999999998877654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.12 Score=55.16 Aligned_cols=149 Identities=11% Similarity=0.117 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCh---H----HHHHHHHHHHHHHHHHHHHHhhhccc-hhhhHHHHHHHHHHHHH
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRR---K----LLLTTIPVLIVSLIILVISETLQLIS-PVLKAGISTACVIIYFC 421 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR---~----lll~~~~l~~i~~l~l~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 421 (523)
.+..++..+.-++..++..++.-+.+++ + -+-++.++++.+.+++....... .+ ....+..+++...++..
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF-GGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcCHHHHHHHHHHHH
Confidence 4556667777777787888888775544 1 23345555555555554432222 11 12122334445555556
Q ss_pred HHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHH------HHHhhCchhHHHHHHHHHHHHHHHhhe
Q 009862 422 CFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPV------MLSSIGLAGAFGVYAVVCFISWVFVFL 495 (523)
Q Consensus 422 ~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~------l~~~~G~~~~f~i~~i~~~i~~v~~~~ 495 (523)
+.-.+..|+...++..+.|++..+..+++..+....|..++..+.+. ..+.......|+.++.+.++..+....
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66677788888888899999999999999888888888888777773 223334445677777766666666554
Q ss_pred eccC
Q 009862 496 RVPE 499 (523)
Q Consensus 496 ~lpE 499 (523)
..|+
T Consensus 486 ~~~~ 489 (498)
T COG3104 486 LSPK 489 (498)
T ss_pred hhHH
Confidence 4443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.38 Score=53.14 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=105.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q 009862 296 EAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-A 374 (523)
Q Consensus 296 ~~~~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~ 374 (523)
+...|+.....+....+--+ .++++..-+-.|+.. .++.+....+ -.............+++++++|- +
T Consensus 32 ~~g~~~s~~~il~~e~~e~~-a~~g~~~nlv~ylt~--------~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~ 101 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERL-AFFGLVSNLVTYLTL--------ELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFL 101 (571)
T ss_pred eechhHhHHHHHHHHHHHHH-hHhcchhHHHHHHHH--------HhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 33344444444444444333 344444444444433 2344442223 33334445556777889999996 5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhccc-------------hhhhHHH-HHHHHHH-HHHHHhhccccccceeeeccc
Q 009862 375 GRRKLLLTTIPVLIVSLIILVISETLQLIS-------------PVLKAGI-STACVII-YFCCFVAAYGPIPNILCAEIF 439 (523)
Q Consensus 375 GRR~lll~~~~l~~i~~l~l~~~~~~~~~~-------------~~~~~~~-~~i~~~~-~~~~~~~~~~~i~~~~~aElf 439 (523)
||-+++.++.++..+.++++.+........ ....... .++...+ ...+..++.-+....+-+|-|
T Consensus 102 gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf 181 (571)
T KOG1237|consen 102 GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF 181 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence 888888888877777665554433322111 1111111 1111122 222234455566666778888
Q ss_pred Cc----ch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 009862 440 PT----KV--RGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFV 493 (523)
Q Consensus 440 P~----~~--Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~ 493 (523)
+. .. +..-+.++....++|..++..+..++-+..+|...|.+..++.+++.++.
T Consensus 182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 72 22 23666777788888888888888888788899888877776666554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.036 Score=57.74 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcc---hhhHHHHHHHHH
Q 009862 378 KLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTK---VRGICIAICAMA 454 (523)
Q Consensus 378 ~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~---~Rg~a~gi~~~~ 454 (523)
++++++.++.+++.+++.+.................+.+ .+.....++.-|....+.+|.|+.+ .|.+...+..++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL-~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGL-ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHH-HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHH-HHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 345666666666666655443332111111112223323 3344445556666667778988765 577788889999
Q ss_pred HHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 455 YWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 455 ~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
.++|++++..+.+++.+..||...|.+..+..+++.+..+..
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988888887777766655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.18 Score=53.87 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=75.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh---hCChHHHHHHHHHHHHHHHHHHHHHhhhc-cch--h-----hhHH
Q 009862 342 GISSESASFLISAFTTFLMLPCIGVAMKLMDV---AGRRKLLLTTIPVLIVSLIILVISETLQL-ISP--V-----LKAG 410 (523)
Q Consensus 342 gls~~~~~~l~~~i~~l~~lig~~l~g~LsDr---~GRR~lll~~~~l~~i~~l~l~~~~~~~~-~~~--~-----~~~~ 410 (523)
+.+......+......++.+++..+.+.+.+| +||++++.++..+-.+.+++..+...... ... . .+..
T Consensus 274 ~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~ 353 (461)
T KOG3098|consen 274 GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSY 353 (461)
T ss_pred cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccch
Confidence 33344445555666777788888888888765 78888888877766665555443222110 000 0 0111
Q ss_pred HHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 411 ISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVML 470 (523)
Q Consensus 411 ~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~ 470 (523)
....++.++.++.-.++....+.+++.++ ++.|..+.++.-+-..+++.++-+..+...
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 12222223333333455556667778888 567888888887777777777666655543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.055 Score=55.05 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hCchh
Q 009862 414 ACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS----------------IGLAG 477 (523)
Q Consensus 414 i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~----------------~G~~~ 477 (523)
++..++.++......+..+.+++.+.|.+.+++.+++...++.+|.+++|.+.+.++.. ..|+.
T Consensus 14 l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (310)
T TIGR01272 14 LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHT 93 (310)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHH
Confidence 33333334444445566678889999999999999999999999999999999988732 35666
Q ss_pred HHHHHHHHHHHHHH-HhheeccCCCC
Q 009862 478 AFGVYAVVCFISWV-FVFLRVPETKG 502 (523)
Q Consensus 478 ~f~i~~i~~~i~~v-~~~~~lpEtk~ 502 (523)
++++.+++.++..+ +.++.+||.+.
T Consensus 94 ~yl~ia~~~~~~~i~~~~~~~p~~~~ 119 (310)
T TIGR01272 94 PYLLLAGALAVLAIIFAFLPLPELQE 119 (310)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 77756555444443 33445566543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=58.26 Aligned_cols=162 Identities=13% Similarity=0.003 Sum_probs=107.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc-------c------ch-
Q 009862 340 NLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL-------I------SP- 405 (523)
Q Consensus 340 ~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~-------~------~~- 405 (523)
.+++++ +.+.++...+-++.++...+..++.-|.-|-+.+-++++++++..+++++...... . ..
T Consensus 126 RF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 126 RFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 466666 45777777888888888888889988888888888888888888887765422110 0 00
Q ss_pred --------------------------h--hhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 406 --------------------------V--LKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 406 --------------------------~--~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
. ...++.+++..++.++......++...|+-|....+.-..-+|+...+.-+
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence 0 012333444444455555566677778888888888888889998888888
Q ss_pred HHHHHHHHHHHHHHhh------------------C-chhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 458 CDIIVTYTLPVMLSSI------------------G-LAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 458 G~iig~~l~~~l~~~~------------------G-~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
|-++|-.+++++...+ | |+..|++.+++.++.++..++ .|++..+
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~ 348 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKELPK 348 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccCcc
Confidence 8888877777766422 2 444455555665555555544 5665443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.043 Score=58.82 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=47.0
Q ss_pred eeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 009862 433 ILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 433 ~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~ 492 (523)
++-+|+..++..+++.++......++..++|.+.-.+....|.++...+.++..++...+
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence 344899999999999999999999999999999888888888877665555544444333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.9 Score=46.82 Aligned_cols=113 Identities=11% Similarity=-0.013 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hhhccchhh--------------------hHHHHHHHH
Q 009862 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE--TLQLISPVL--------------------KAGISTACV 416 (523)
Q Consensus 359 ~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~--~~~~~~~~~--------------------~~~~~~i~~ 416 (523)
..++...+-.+++++++|.+++-+.......+.+++++.. +-...+... ..|...++.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4455666778999999999988776666655555544432 211111110 001111111
Q ss_pred HHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 417 IIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 417 ~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
+..-........-+.|.+++|++..+.-.+-+++...+.++|.++++.+..++..
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222333568899999999999999999999999999999999888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.34 Score=50.12 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHH--HHHHHHHHHHH-----
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLML--PCIGVAMKLMD----- 372 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~l--ig~~l~g~LsD----- 372 (523)
++.+.+..++...+.. - +++..-.|.+++.-|.+ - .... ++.++.- ---+++..++|
T Consensus 30 ~~~illLl~LYllQGi-P-~GL~~~iP~lL~ak~vS---------y-t~~a----~fS~ay~P~sLKllWaPiVDs~y~k 93 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGI-P-LGLIGAIPLLLQAKGVS---------Y-TSQA----IFSFAYWPFSLKLLWAPIVDSVYSK 93 (510)
T ss_pred hhhHHHHHHHHHHcCC-c-hhHhhhhHHHhcCCCcc---------h-hhhh----hhhhhhhHHHHHHHHHhhhHHHHHH
Confidence 4556666666655533 2 35555788888864432 1 1111 2222222 23457778888
Q ss_pred hhCChHHHHHH-HHHHHHHHHHHHH
Q 009862 373 VAGRRKLLLTT-IPVLIVSLIILVI 396 (523)
Q Consensus 373 r~GRR~lll~~-~~l~~i~~l~l~~ 396 (523)
|+|||+..++- ..+.+..+..+..
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs~ 118 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLSY 118 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHhh
Confidence 99999876653 3344444444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.11 Score=51.06 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 009862 361 LPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLI 392 (523)
Q Consensus 361 lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l 392 (523)
++...+.|-++|+-|||+.-+.-++..+++++
T Consensus 86 mLFGtivgSLaDkqGRKracvtycitYiLsCi 117 (454)
T KOG4332|consen 86 MLFGTIVGSLADKQGRKRACVTYCITYILSCI 117 (454)
T ss_pred HHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence 33445667799999999976655555555544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.4 Score=44.10 Aligned_cols=146 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH----HHHHHHHHHhhhccch---hhhHHHHHHHHHHHHHH
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIV----SLIILVISETLQLISP---VLKAGISTACVIIYFCC 422 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i----~~l~l~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 422 (523)
........+..++..+..|.++||..|.+....+.++.-+ ++.++....... ... .......+++..++++.
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYP-SSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-ccccccchHHHHHHHHHHHHHHH
Confidence 3444555667777888889999999998877666554422 222222222111 111 11111122222222221
Q ss_pred Hhhccccccceeeecc----c--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 423 FVAAYGPIPNILCAEI----F--PTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 423 ~~~~~~~i~~~~~aEl----f--P~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
-..+.....-++--|+ . .+..+....+...-+=-+..+++|.+.+.+.+..+......+.++..++..++=+++
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111222 2 222233333332222235788999999999998888777777777777766654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.016 Score=57.29 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDV-AGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYG 428 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr-~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 428 (523)
.++.+++..-.++-++++||+.|| +|-|..-++-++...+.-++++ .+...++...+.+-.+..+..+-...
T Consensus 82 tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa-------~Ggi~~aFw~M~~GRF~FGIGgESlA 154 (459)
T KOG4686|consen 82 TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFA-------AGGISHAFWTMLAGRFLFGIGGESLA 154 (459)
T ss_pred eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHH-------hchHHHHHHHHHhhheeeccCchhhh
Confidence 344557777888889999999996 6766544433333333333332 22223333344444444444444455
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009862 429 PIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI 473 (523)
Q Consensus 429 ~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~ 473 (523)
...+.++.-.|.-+.-+.++|+.....++|+.+--.+.|++.+..
T Consensus 155 VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 155 VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 566778888899999999999999999999998888888887755
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.1 Score=56.22 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=49.0
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTT-IPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~-~~l~~i~~l~l~ 395 (523)
+...+...++.|++++|+ ++ .....+....-+..+++.+++|+++||+-+|+.++++ .+....+.+++.
T Consensus 26 ~~g~l~pll~vy~kQLGl---------~p-~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~ 95 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGL---------NP-AVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV 95 (618)
T ss_pred cccccchHHHHHHHHcCC---------CH-HHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence 456777888899988655 44 4555666677788999999999999999866555544 444444444444
Q ss_pred H
Q 009862 396 I 396 (523)
Q Consensus 396 ~ 396 (523)
+
T Consensus 96 f 96 (618)
T KOG3762|consen 96 F 96 (618)
T ss_pred e
Confidence 3
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=2.1 Score=45.97 Aligned_cols=112 Identities=9% Similarity=-0.093 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhc
Q 009862 347 SASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAA 426 (523)
Q Consensus 347 ~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 426 (523)
...+....+......+++++++.+.|++|.|..|+++.....+..+.+...+.+. .++.-.+.+.+.+..
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~----------~yfssallG~Gaall 119 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYY----------LYFSSALLGFGAALL 119 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHH----------HHHHHHHhhhhHHhe
Confidence 3455557778888899999999999999999999999888877776665544332 333334444444433
Q ss_pred cccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 427 YGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVM 469 (523)
Q Consensus 427 ~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l 469 (523)
+..- ..+.+|....+.+.+.+++.-.++..+.++|..+.-.+
T Consensus 120 w~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 120 WTGQ-GGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred eccc-ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 3333 36778999999999999998888888888776655443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.10 E-value=4.9 Score=43.14 Aligned_cols=113 Identities=7% Similarity=-0.063 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhh----ccc---------hhh----------hHHHHHHH
Q 009862 359 LMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQ----LIS---------PVL----------KAGISTAC 415 (523)
Q Consensus 359 ~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~----~~~---------~~~----------~~~~~~i~ 415 (523)
.+++..++-.++.+++-|.+++-+.+..+..+.+++++..... +.+ ... ..|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 4556667777888888888887766666655555555433211 011 000 01222222
Q ss_pred HHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 416 VIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 416 ~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
.++.-.-......-+.|..+.|++..++-.+-+++.+...+++.++++.+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222223333567778999999999999999999999999998888887765
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=90.34 E-value=11 Score=37.15 Aligned_cols=35 Identities=11% Similarity=-0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 009862 353 SAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVL 387 (523)
Q Consensus 353 ~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~ 387 (523)
..++.++.++|.+..|.+...-=+|+.++.+.+.+
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~ 181 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISL 181 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHH
Confidence 33444455566666666655333344444433333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=89.76 E-value=7.2 Score=41.13 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=36.3
Q ss_pred HHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 416 VIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 416 ~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
++++.+..++......+..+.|-.|++.|-.++|...+.-.+|..++..+.-.+-.
T Consensus 341 lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 341 LIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33343433333333333445677899999999999988888888877776554433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.04 E-value=28 Score=37.87 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 009862 353 SAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSL 391 (523)
Q Consensus 353 ~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~ 391 (523)
....++..++..++++.+..|+|=+...++.-+++.++.
T Consensus 325 ~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 325 SSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 344455556666788899999998877766544444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.36 E-value=22 Score=37.53 Aligned_cols=16 Identities=6% Similarity=-0.193 Sum_probs=10.7
Q ss_pred hhhhhhhchHHHHHhc
Q 009862 317 GINGVLYYTPQILEQA 332 (523)
Q Consensus 317 g~~~i~~~~p~il~~~ 332 (523)
.++.+.+-.+++...+
T Consensus 33 pWN~fiTa~~y~~~~~ 48 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRF 48 (406)
T ss_pred chHhhhccHHHHHhhc
Confidence 4667777777776664
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=86.57 E-value=3.6 Score=43.37 Aligned_cols=128 Identities=9% Similarity=0.106 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccccccee
Q 009862 355 FTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNIL 434 (523)
Q Consensus 355 i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 434 (523)
.-.+-.++..+++.++.+|+.-+.-.+++.+++++++++.++..+.. .-++.+.+.. ++.+.+-+...-
T Consensus 67 adi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~---------~~l~Gv~las--~ssg~GE~tfL~ 135 (402)
T PF02487_consen 67 ADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVW---------VRLLGVVLAS--LSSGLGEVTFLS 135 (402)
T ss_pred HHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchh---------HHHHHHHHHh--hhhhhhHHHHHH
Confidence 34455666777788899988644333444445555655555433222 2222222222 222222222121
Q ss_pred eecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--hhHHHHHHHHHHHHHHHhheecc
Q 009862 435 CAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGL--AGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 435 ~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~--~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
....|+.. +++-.......++++|+...-.+.. .|+ +..+.+..++.++..+..++.+|
T Consensus 136 lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 136 LTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred HHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23455542 3344444445566666665544444 554 44566666666555544444454
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.21 E-value=11 Score=40.37 Aligned_cols=117 Identities=8% Similarity=0.001 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhccc---hhhhHHHHHHHHHHHHHHH
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRK-LLLTTIPVLIVSLIILVISETLQLIS---PVLKAGISTACVIIYFCCF 423 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~-lll~~~~l~~i~~l~l~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~ 423 (523)
.......+++++-++|..+..+.. .-.+|. .+.+..+.=.+...++.++....... ...+.+.. +++.+..+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~-~~~~~l~glt 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYF-IILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHH-HHHHHHHHHh
Confidence 444566677788888887554331 112231 23333333333333332222110000 11122222 2233333333
Q ss_pred hhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 009862 424 VAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTL 466 (523)
Q Consensus 424 ~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~ 466 (523)
.+........+..+..+++.|-.+-.+...+..+|-.+|..+.
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344445555667778888998888888877777777776653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=84.08 E-value=6.3 Score=41.64 Aligned_cols=76 Identities=13% Similarity=-0.044 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChH
Q 009862 299 VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRK 378 (523)
Q Consensus 299 ~~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ 378 (523)
+..+.++-+.+++....+|++-+..|...+.+....+ +- .....+.+-++..+.+.++.+..|++..++.+..
T Consensus 244 y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~------~~-~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~ 316 (412)
T PF01770_consen 244 YSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPS------DN-ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG 316 (412)
T ss_pred hcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCC------CC-CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH
Confidence 4456667777777777888888888988888775110 00 1122334455666777778888888866666644
Q ss_pred HHH
Q 009862 379 LLL 381 (523)
Q Consensus 379 lll 381 (523)
-+.
T Consensus 317 ~l~ 319 (412)
T PF01770_consen 317 ELA 319 (412)
T ss_pred HHH
Confidence 433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.74 E-value=11 Score=37.60 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--H
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR--K 378 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR--~ 378 (523)
|..+++.+ +......-+..+..|.|.+-.+ +-+. .. ..+...+.++.++|.-+..++..|-..| +
T Consensus 249 ki~LLG~i-qsLFE~smytFVFLWTPaLspn--------~e~i---Ph-GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ 315 (454)
T KOG4332|consen 249 KIALLGAI-QSLFEGSMYTFVFLWTPALSPN--------DEEI---PH-GFIFATFMLASMLGSSLASRLLSRSSPKVES 315 (454)
T ss_pred HHHHHHHH-HHHHhhhhheeeeeecccCCCC--------cccC---Cc-hhHHHHHHHHHHHhhHHHHHHHhcCCcccch
Confidence 33444443 3333333355667788877422 1111 12 2333345566667777777776664443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHH
Q 009862 379 LLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICA 452 (523)
Q Consensus 379 lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~ 452 (523)
.+.+.+++.++.+.+..+..... .+ .......++.++++-.+.+..+..+. -+=+...|.+.|++.+-+.-
T Consensus 316 ymqivf~vs~a~l~Lpilt~~vs-P~-kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 316 YMQIVFLVSIAALLLPILTSSVS-PS-KESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-CC-cCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence 55555555555444433333222 22 22333445666666666665554444 44577889999988877643
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=81.29 E-value=21 Score=38.24 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHH
Q 009862 355 FTTFLMLPCIGVAMKLMDVAGRRKLLLTTIP 385 (523)
Q Consensus 355 i~~l~~lig~~l~g~LsDr~GRR~lll~~~~ 385 (523)
...+..++..++...+..|+..|.-++.+++
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 3444445555555566666665333333433
|
|
| >PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) | Back alignment and domain information |
|---|
Probab=80.86 E-value=0.5 Score=46.28 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHhheeccCCCC
Q 009862 486 CFISWVFVFLRVPETKG 502 (523)
Q Consensus 486 ~~i~~v~~~~~lpEtk~ 502 (523)
.++.++++++++-+++.
T Consensus 174 ~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 174 LLFLAILIWLYVHDQRH 190 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 34445556666666654
|
LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.60 E-value=4.2 Score=43.28 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc-c------c--hhhhHHHHHHHHHHH
Q 009862 349 SFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL-I------S--PVLKAGISTACVIIY 419 (523)
Q Consensus 349 ~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~-~------~--~~~~~~~~~i~~~~~ 419 (523)
..+-.+++++...+.+.+.-++++|+|-|+.++.+.....+...+.....+... . + ..........++..+
T Consensus 334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y 413 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY 413 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence 345566777777888888999999999444444333322222222221111110 0 0 000000111111111
Q ss_pred HHH--HhhccccccceeeecccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhH
Q 009862 420 FCC--FVAAYGPIPNILCAEIFPTK--VRGICIAICAMAYWICDIIVTYTLPVMLSSIGLAGA 478 (523)
Q Consensus 420 ~~~--~~~~~~~i~~~~~aElfP~~--~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~~~ 478 (523)
... --+....++++..+...... -+|...|+.+....+..++.....|.+.+..|-...
T Consensus 414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~ 476 (498)
T KOG0637|consen 414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNL 476 (498)
T ss_pred HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcch
Confidence 111 01112233444433222222 236667777888888888888888888888765443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 523 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-14 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.55 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.45 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.39 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.22 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.75 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.29 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=216.74 Aligned_cols=207 Identities=26% Similarity=0.487 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 009862 300 KRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKL 379 (523)
Q Consensus 300 ~~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~l 379 (523)
++++++.+...+++++.+++.+.+|.|.+.+..+. ........+.+..+..+++.+++++++||+|||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~ 344 (491)
T 4gc0_A 275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA----------STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL 344 (491)
T ss_dssp CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC----------CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 35677777888888888999999999999888654 22455566677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICD 459 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~ 459 (523)
++.+..+++++++.+....... ...+..++.++++..++..+++++.+++.+|+||++.|++++|++++++++++
T Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 345 QIIGALGMAIGMFSLGTAFYTQ-----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN 419 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 9998888888777665443322 11233445555666677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHHhcccccccc
Q 009862 460 IIVTYTLPVMLS------SIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATK 521 (523)
Q Consensus 460 iig~~l~~~l~~------~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le~i~~~~~~~~~~~~~ 521 (523)
++++.++|.+.+ ..++...|+++++++++..+++++++||||++++||++++|+++.++.++
T Consensus 420 ~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~ 487 (491)
T 4gc0_A 420 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQ 487 (491)
T ss_dssp HHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccccc
Confidence 999999988754 34566788899999999999999999999999999999999887665443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=146.99 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=131.4
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
..+.+..++|.+.++ + ++. ....++.++..++.+++.+++|+++||+|||++++++.++.+++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~---------~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQ---------G-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHTSHHHHHHHTTSS---------T-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------h-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 455566667777665 3 344 56667777889999999999999999999999999999998888887776
Q ss_pred ----HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 397 ----SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 397 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
..++. .+++..++.++......+...++++|++|.+.|++++++.+....+|.++++.+.+.+.+.
T Consensus 112 ~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 112 VPWATSSIA----------VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp CHHHHSSSS----------HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred hhhccccHH----------HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3444444555555555666668889999999999999999999999999999999999999
Q ss_pred hC-chhHHHHHHHHHHHHHHHhheeccCCCC
Q 009862 473 IG-LAGAFGVYAVVCFISWVFVFLRVPETKG 502 (523)
Q Consensus 473 ~G-~~~~f~i~~i~~~i~~v~~~~~lpEtk~ 502 (523)
.| |++.|++.++++++..++.++++||++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 98 9999999998888877777777777543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=144.77 Aligned_cols=177 Identities=13% Similarity=0.174 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHH
Q 009862 302 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRRKL 379 (523)
Q Consensus 302 ~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~--GRR~l 379 (523)
.++..++..++. ..+.+.+..|.|.++++ .+|++. ....+...+..++.+++.++.++++||+ |||++
T Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 253 LLWYIAIANVFV-YLLRYGILDWSPTYLKE--------VKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHBTT--------BSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 333333333333 33467788899999876 245545 4566677788899999999999999999 99998
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH-
Q 009862 380 LLTTIPVLI-VSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI- 457 (523)
Q Consensus 380 ll~~~~l~~-i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l- 457 (523)
++++.++.. ++++++.+. .....+...+.. ++.+++.....+..+.++.|.+|++.|++++|+.+.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMN-------PAGNPTVDMICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSC-------CTTCHHHHHHHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------cccCHHHHHHHH-HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence 887766655 433332211 111112222222 2233333334445557789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 458 CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 458 G~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
|.++++.+.+.+.+..|+...|++.++++++..++.++.
T Consensus 395 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888777766665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=141.07 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hCChHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV-AGRRKL 379 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr-~GRR~l 379 (523)
+.++..++..++..+ +++.+..+++.++.+. ...+++|++. ....++.++..++.+++.+++|+++|| +|||++
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERF-SYYGMRAILLYYMWFL---ISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp THHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---cchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344444444444444 4667777888887661 0111256655 566677788999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcch--hhHHHHHHHHHHHH
Q 009862 380 LLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKV--RGICIAICAMAYWI 457 (523)
Q Consensus 380 ll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~--Rg~a~gi~~~~~~l 457 (523)
++++.++.+++.+++.+..+.. .+++..++.++......+...++++|++|++. |+.++++.+....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 157 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGAS----------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH
Confidence 9999988888877765433332 33334444444444555666678899999988 78888889999999
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhhee
Q 009862 458 CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLR 496 (523)
Q Consensus 458 G~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~ 496 (523)
|.+++|.+.+.+.+..||++.|++.+++++++.++.++.
T Consensus 158 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 158 GAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988777666665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=138.07 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHH
Q 009862 301 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLL 380 (523)
Q Consensus 301 ~~~li~~~l~~~~~~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~ll 380 (523)
+.+++.++..++..+ ..+.+..+.|.+.+++| ++. ....++.++..++.+++.+++|+++||+|||+++
T Consensus 26 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g---------~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 26 IPFALLCSLFFLWAV-ANNLNDILLPQFQQAFT---------LTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSC---------CCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHcC---------CCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 344444444333333 34566777888777654 444 5677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHH
Q 009862 381 LTTIPVLIVSLIILV---ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 457 (523)
Q Consensus 381 l~~~~l~~i~~l~l~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~l 457 (523)
+++.++.+++.+++. ...++. .+++..++.++......+....+++|++|++.|+.++++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 95 ITGLFLYALGAALFWPAAEIMNYT----------LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccHH----------HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999998888877763 222222 3344444444545555556667889999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhC-------------------------chhHHHHHHHHHHHHHHHhh-eeccCCCC
Q 009862 458 CDIIVTYTLPVML-SSIG-------------------------LAGAFGVYAVVCFISWVFVF-LRVPETKG 502 (523)
Q Consensus 458 G~iig~~l~~~l~-~~~G-------------------------~~~~f~i~~i~~~i~~v~~~-~~lpEtk~ 502 (523)
|.++++.+.+.+. ...+ |++.|++.++++++..++.+ ...||++.
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999988 4444 78888777766665554443 34566543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=139.75 Aligned_cols=167 Identities=10% Similarity=0.076 Sum_probs=131.9
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVI 396 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~ 396 (523)
+...+....|.+.+++ |.+. ....+...+..++..++.++.|+++||+|||++++++.++.+++.+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~---------g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 15 AQTIYIPAIADMARDL---------NVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHTTS---------SSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHc---------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 3455566677776654 4444 56667778889999999999999999999999999999888888877766
Q ss_pred HHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 009862 397 SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIGLA 476 (523)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G~~ 476 (523)
..+.. .+++..++.++......+....++.|.+|++.|++++++.+....+|.++++.+.+.+.+..+|+
T Consensus 85 ~~~~~----------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 85 TSSLT----------VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred hccHH----------HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 54433 34444444455555556666678899999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 477 GAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 477 ~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
..+++.+++.++..++..+++||++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999988888888777677778887543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=137.06 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcccc
Q 009862 350 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 429 (523)
Q Consensus 350 ~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 429 (523)
.+...+..++.+++.++.++++||+|||++++.+.++.+++.+++.+.. + .+..++...+...+ .....+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~~-~~~~~~ 331 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT------S---ALEVVILKTLHMFE-VPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC------S---HHHHHHHTTHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc------c---HHHHHHHHHHHHHH-HHHHHH
Confidence 4455566677888999999999999999998877766666544332111 0 11112221112222 122223
Q ss_pred ccceeeecccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 430 IPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 430 i~~~~~aElfP~~~Rg~a~gi~-~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.+..|+...|.+.++++++..++.+++.||++..
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 3356789999999999999995 8888999999999999999988887788888888887777777777876653
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=129.27 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=110.1
Q ss_pred hhhhhhhchHHH-HHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQI-LEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV 395 (523)
Q Consensus 317 g~~~i~~~~p~i-l~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~ 395 (523)
..+.+..|.|.+ +++. +|++. ....+...+..++.+++.++.++++||+|||++++++.++.+++++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~--------~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEI--------PGMTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHHHHHHS--------TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc--------CCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 355677888998 7763 35555 5566667778899999999999999999999999888877777666554
Q ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 009862 396 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG- 474 (523)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G- 474 (523)
+..... .++.+.+. +++.....+..+.++.|.+|++ |+++.++.. ...+|.+++|.+.+.+.+..|
T Consensus 344 ~~~~~~----------~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~ 410 (438)
T 3o7q_A 344 FAGGHV----------GLIALTLC-SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN 410 (438)
T ss_dssp HCCHHH----------HHHHHHHH-HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCcH----------HHHHHHHH-HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 322111 22222222 3333444566667778999977 888888877 677999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHH
Q 009862 475 LAGAFGVYAVVCFISWVF 492 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~ 492 (523)
+...|.+.+++.++..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 411 IPTAELIPALCFAVIFIF 428 (438)
T ss_dssp SGGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888887665554444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=137.47 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=121.8
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHH
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLG------ISSESASFLISAFTTFLMLPCIGVAMKLMDVA-GRRKLLLTTIPVLIV 389 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lg------ls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~-GRR~lll~~~~l~~i 389 (523)
+++++..++|.++.+ ++| ++. ....++..+..++.+++.+++|+++||+ |||++++++.++.++
T Consensus 27 ~~~~~~~~l~~~l~~--------~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 27 SFYGMRNILTPFLMT--------ALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHH--------SCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 356777788887765 344 555 4566677788899999999999999999 999999998888887
Q ss_pred HHHHHHHHH-hhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHH---HHHHHHHHHHHHHHH
Q 009862 390 SLIILVISE-TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAI---CAMAYWICDIIVTYT 465 (523)
Q Consensus 390 ~~l~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi---~~~~~~lG~iig~~l 465 (523)
+.+++.+.. +.. .+++..++.++......+...++++|.+|++.|+++.++ .+....+|.++++.+
T Consensus 98 ~~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 98 GHAFLAIFEHSVQ----------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHTSSCHH----------HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHH----------HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665443 222 233334444444455556666788999999999776666 888999999999999
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHhheecc
Q 009862 466 LPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVP 498 (523)
Q Consensus 466 ~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lp 498 (523)
.+.+.+..+|++.|++.+++.++..++.++..|
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999899999998887776666555544333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=123.36 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc--------cchhhhHHHHHHHHHHH
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQL--------ISPVLKAGISTACVIIY 419 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~--------~~~~~~~~~~~i~~~~~ 419 (523)
...++.+...++.+++.+++|+++||+|||++++++.++++++.++.++...... ..........+++..++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3446666788899999999999999999999999999998888877664321110 00011223355666666
Q ss_pred HHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CchhHHHHHHHHHHHHHH
Q 009862 420 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI--------GLAGAFGVYAVVCFISWV 491 (523)
Q Consensus 420 ~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~--------G~~~~f~i~~i~~~i~~v 491 (523)
.++..++..++..++++|+.|++.|+...++.+....+|.+++..+...+.... .|+..+. ...+..+..+
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA-SECIPALLFL 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh-hhhhhhhhhh
Confidence 666666667777788999999999999999999998888888887776665432 2332333 3333334444
Q ss_pred HhheeccCC
Q 009862 492 FVFLRVPET 500 (523)
Q Consensus 492 ~~~~~lpEt 500 (523)
+..+++||+
T Consensus 215 ~~~~~~peS 223 (491)
T 4gc0_A 215 MLLYTVPES 223 (491)
T ss_dssp HHGGGSCCC
T ss_pred hhhhcCCCC
Confidence 555668987
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=121.33 Aligned_cols=175 Identities=6% Similarity=-0.005 Sum_probs=107.1
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHH-----HHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL-----TTIPVLIVSLI 392 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll-----~~~~l~~i~~l 392 (523)
+.....+.|.++.+. .+.+. ....+...+..+..+++.++.++++||+|||+... ++.++.+++++
T Consensus 299 ~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 299 EEQGSVVLATFAAER--------VDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HGGGGTHHHHHHHHS--------CCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHT
T ss_pred HhhccHHHHHHHHHH--------hccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Confidence 455666777777662 22222 12233445666777888899999999999986554 55555555554
Q ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009862 393 ILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS 472 (523)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~ 472 (523)
++.+.............+ ..+...++.++......+..+.++.|.+|++.|++++|++++..++|.++++.+.+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~- 447 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPL-WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA- 447 (491)
T ss_dssp TTHHHHHHCCCCTTCCTH-HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-
T ss_pred HHHHHHHhcCCCCCccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444332111000111112 222333333334444456667788999999999999999999999999999999887764
Q ss_pred hCchhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 473 IGLAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 473 ~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
.++...+.+++++++++.++.+++.|+.+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678888888887777777767766554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.6e-10 Score=114.91 Aligned_cols=165 Identities=16% Similarity=0.082 Sum_probs=94.9
Q ss_pred hhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH-
Q 009862 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV- 395 (523)
Q Consensus 317 g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~- 395 (523)
++..+..++|.++++ ++|++. ....++.++..++.+++.+++|+++||+|||++++++..+.+++...+.
T Consensus 22 ~~~~~~~~~~~~l~~--------~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~ 92 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHD--------INHISK-SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHTTTHHHHHHT--------TTCCCT-TTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 355667888998876 355555 4566677788899999999999999999999999887766544222111
Q ss_pred --HHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009862 396 --ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPT--KVRGICIAICAMAYWICDIIVTYTLPVMLS 471 (523)
Q Consensus 396 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~--~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~ 471 (523)
+..... .. .+....+.....+....+. ...+.+..+. +.|+.+++.......+|..++|.+.+++.+
T Consensus 93 ~~~~~~~~-----~~---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 93 FIFGPLLQ-----YN---ILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HTHHHHHH-----TT---CCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HH---HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 00 0000000000011111111 1122233332 345666777777788899999999988876
Q ss_pred hhCchhHHHHHHHHHHHHHHHhheeccCC
Q 009862 472 SIGLAGAFGVYAVVCFISWVFVFLRVPET 500 (523)
Q Consensus 472 ~~G~~~~f~i~~i~~~i~~v~~~~~lpEt 500 (523)
.+|+..|++.++..++..++.++..||+
T Consensus 164 -~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 164 -INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp -HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred -hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 5787777665555444333333333443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-09 Score=108.82 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=90.0
Q ss_pred hhhhhhhchHHHHHh-cCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHH-HHHHHHHH
Q 009862 317 GINGVLYYTPQILEQ-AGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPV-LIVSLIIL 394 (523)
Q Consensus 317 g~~~i~~~~p~il~~-~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l-~~i~~l~l 394 (523)
+.+.+..+.|.++++ .|. +. ........+..++.+++.++.+++.||++|+. ..+..+ ..++.+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~g~---------~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGL---------SS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMW 281 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHH---------HH-HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHHHHHHHHhCC---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 355667777777665 343 22 45556666777888889999999999988732 222222 11111111
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
..... ...+.+...+..+++ ++......+....++.|.+| +.|+++.|+.+....+|.++++.+.+.+.+..+
T Consensus 282 ~~~~~-----~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 282 IPDWF-----GVMNVWTLLVPAALF-FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHH-HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHhhh-----ccccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11100 001112222222333 33334455666677899999 899999999999999999999999999887766
Q ss_pred chhHHHH
Q 009862 475 LAGAFGV 481 (523)
Q Consensus 475 ~~~~f~i 481 (523)
+...+.+
T Consensus 355 ~~~~~~~ 361 (375)
T 2gfp_A 355 GSLGLLM 361 (375)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 6544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-07 Score=99.69 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=56.3
Q ss_pred HHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------Cc-hhHHHHHHHHHH
Q 009862 419 YFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI----------GL-AGAFGVYAVVCF 487 (523)
Q Consensus 419 ~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~----------G~-~~~f~i~~i~~~ 487 (523)
+.++......+..+.++.|.+|++.|++++|+.++..++|.++++.+.+.+.+.. +. ...|++++++++
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHH
Confidence 3333344445666677899999999999999999999999999999999887532 21 222666677777
Q ss_pred HHHHHhheeccCCCCCCHH
Q 009862 488 ISWVFVFLRVPETKGMPLE 506 (523)
Q Consensus 488 i~~v~~~~~lpEtk~~~le 506 (523)
+.+++.+++.++++.++.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 494 LAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHhccchhh
Confidence 7777777767777665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 523 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 6e-10 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-06 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 58.9 bits (141), Expect = 6e-10
Identities = 26/256 (10%), Positives = 78/256 (30%), Gaps = 15/256 (5%)
Query: 257 LVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFS 316
+ P ++++ + + + + ++ + LL + I + +
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 317 GINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGR 376
G+L ++P L++ + S + +P + + D R
Sbjct: 264 LRYGILDWSPTYLKEVK---------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 314
Query: 377 RKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCA 436
T + + + I ++ +P + +I + + +
Sbjct: 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTV-----DMICMIVIGFLIYGPVMLIGLHAL 369
Query: 437 EIFPTKVRGICIAICAMAYWICDIIVTYTL-PVMLSSIGLAGAFGVYAVVCFISWVFVFL 495
E+ P K G + ++ + + + G G F V ++ + + +
Sbjct: 370 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429
Query: 496 RVPETKGMPLEVITEF 511
+ K +++ E
Sbjct: 430 VMIGEKRRHEQLLQEL 445
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 13/174 (7%)
Query: 336 VLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV 395
L G S F +S + + + D + R L LI+
Sbjct: 49 PYLVEQGFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRV-------FLPAGLILAA 100
Query: 396 ISETLQLISPVLKAGISTACVIIYFC-CFVAAYGPIPNILCAEIFPTKVRGICIAIC--- 451
P + I+ V+++ C F P + K RG +++
Sbjct: 101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 160
Query: 452 -AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMP 504
+ I ++ + A++ + + P++ G+P
Sbjct: 161 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 214
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 17/154 (11%), Positives = 40/154 (25%), Gaps = 4/154 (2%)
Query: 354 AFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGIST 413
++ + +M A + L+++ I+ + + +
Sbjct: 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV-- 316
Query: 414 ACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSS 472
+ V F + +C + I ++ M S
Sbjct: 317 -ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375
Query: 473 IGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLE 506
IG GA+ V +V + + + L
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 5/172 (2%)
Query: 337 LLSNLGISSESASFLISAF--TTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL 394
L IS + +A + L P G+ L D G RK LL I ++V
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGL---LSDKLGLRKYLLWIITGMLVMFAPF 90
Query: 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMA 454
I L+ + G + + FC A I G +
Sbjct: 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVG 150
Query: 455 YWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLE 506
+ + IV + + G+ + + + T +
Sbjct: 151 WALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG 202
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.02 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.7e-14 Score=142.85 Aligned_cols=153 Identities=11% Similarity=0.012 Sum_probs=116.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHH
Q 009862 341 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYF 420 (523)
Q Consensus 341 lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 420 (523)
+|++. .+..++.++..++..++.+++|+++||+|||++++++.++.+++.+++.+..... . ....+++..++.
T Consensus 54 ~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~ 126 (447)
T d1pw4a_ 54 QGFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-S-----SIAVMFVLLFLC 126 (447)
T ss_dssp STTCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-S-----SSSHHHHHHHHH
T ss_pred hCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-h-----hHHHHHHHHHHH
Confidence 45556 5666777788999999999999999999999999999988888777766543221 0 111334444444
Q ss_pred HHHhhccccccceeeecccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHHhheeccC
Q 009862 421 CCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSI-GLAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 421 ~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~-G~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
+++.....+....+++|.+|++.|++++++.+....+|.++++.+.+.+.... +|++.+++.++++++..++.++++++
T Consensus 127 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 44444445555677899999999999999999999999999999988877765 78888888888888777777776655
Q ss_pred C
Q 009862 500 T 500 (523)
Q Consensus 500 t 500 (523)
+
T Consensus 207 ~ 207 (447)
T d1pw4a_ 207 T 207 (447)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=7e-13 Score=135.14 Aligned_cols=171 Identities=12% Similarity=0.143 Sum_probs=114.5
Q ss_pred hhhhhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 009862 315 FSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIIL 394 (523)
Q Consensus 315 ~~g~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l 394 (523)
....+.+..|.|.++.+ ..+++. ........+..+..+++.+++++++||++||...........+..+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (447)
T d1pw4a_ 262 YLLRYGILDWSPTYLKE--------VKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 332 (447)
T ss_dssp HHHHHHHHHHHHHHBTT--------BSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhhhhhccc--------cccccc-chhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHH
Confidence 33456778888888776 345555 456666778888999999999999999998865554443333332222
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHhhccccccceeeecccCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 009862 395 VISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWIC-DIIVTYTLPVMLSSI 473 (523)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~aElfP~~~Rg~a~gi~~~~~~lG-~iig~~l~~~l~~~~ 473 (523)
..... ......+...++. +..++...+..+..+.++.|.+|++.|+++.|+++++.+++ .++++.+.+++.+..
T Consensus 333 ~~~~~----~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 333 IVYWM----NPAGNPTVDMICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHTTS----CCTTCHHHHHHHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHh----cccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 1111122222222 22333344445556677899999999999999999988874 567899999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhheeccC
Q 009862 474 GLAGAFGVYAVVCFISWVFVFLRVPE 499 (523)
Q Consensus 474 G~~~~f~i~~i~~~i~~v~~~~~lpE 499 (523)
|+...++++.+++++..++.+++.++
T Consensus 408 g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 408 GWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988888877777776666554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.2e-13 Score=134.53 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHhhcc
Q 009862 348 ASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAY 427 (523)
Q Consensus 348 ~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 427 (523)
..........++..++..+.+++.||+|||+++.++.++.+++.+.+.+..+.. .+++..++.++.....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL----------EVVILKTLHMFEVPFL 329 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHH----------HHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccc----------hhhHHHHHHHHHHHHH
Confidence 444555667788889999999999999999999988888877776655432222 2222223333333334
Q ss_pred ccccceeeecccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhheeccCCCCCCHH
Q 009862 428 GPIPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLE 506 (523)
Q Consensus 428 ~~i~~~~~aElfP~~~Rg~a~gi~-~~~~~lG~iig~~l~~~l~~~~G~~~~f~i~~i~~~i~~v~~~~~lpEtk~~~le 506 (523)
.+....++.|.+|++.|+++.++. ++...+|.++++.+.|++.+.+|+...+++.++++++..++.++.+++++...+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLL 409 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHH
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 455567789999999999999986 4566799999999999999999999999999988888888888888877776654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.1e-09 Score=108.15 Aligned_cols=169 Identities=15% Similarity=0.043 Sum_probs=101.0
Q ss_pred hhhhhhchHHHHHhcCchhhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q 009862 318 INGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVIS 397 (523)
Q Consensus 318 ~~~i~~~~p~il~~~G~~~~~~~lgls~~~~~~l~~~i~~l~~lig~~l~g~LsDr~GRR~lll~~~~l~~i~~l~l~~~ 397 (523)
...+..++|.++++ ++|++. ....++.++..++.+++.+++|+++||+|||++++++..+..++.+++.+.
T Consensus 23 ~~~~~~~l~~~l~~--------~~g~s~-~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T d1pv7a_ 23 MGAYFPFFPIWLHD--------INHISK-SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHH--------HHCCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------ccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 44556677877765 345555 567777888999999999999999999999999998888777776666554
Q ss_pred HhhhccchhhhHHHHHHHHHHHHH-HHhhccccccceeeecccC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009862 398 ETLQLISPVLKAGISTACVIIYFC-CFVAAYGPIPNILCAEIFP--TKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG 474 (523)
Q Consensus 398 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~i~~~~~aElfP--~~~Rg~a~gi~~~~~~lG~iig~~l~~~l~~~~G 474 (523)
.... ......+...+... .......+..... ....+ .+.+....+........+.++++.+.+.+... +
T Consensus 94 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 165 (417)
T d1pv7a_ 94 IFGP------LLQYNILVGSIVGGIYLGFCFNAGAPAV-EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N 165 (417)
T ss_dssp THHH------HHHTTCHHHHHHTTTTGGGGGTTHHHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred hhhh------hHHHHHHHHHHHhhhcccccccchhhcc-cccccchhhhhHHHHHHHhhhhccccccccccccccccc-c
Confidence 3322 00000111111111 1111111111111 11122 12344556666677778888888888877664 4
Q ss_pred chhHHHHHHHHHHHHHHHhheeccCCCCC
Q 009862 475 LAGAFGVYAVVCFISWVFVFLRVPETKGM 503 (523)
Q Consensus 475 ~~~~f~i~~i~~~i~~v~~~~~lpEtk~~ 503 (523)
+...+.+......+..++.++..+++...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 166 NQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred ccccccchhhHHHHHHHHHHHHhcccccc
Confidence 44556666666666666666666665443
|