Citrus Sinensis ID: 009867
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMT7 | 514 | 4-coumarate--CoA ligase-l | yes | no | 0.978 | 0.996 | 0.807 | 0.0 | |
| O74976 | 512 | Putative peroxisomal-coen | yes | no | 0.950 | 0.970 | 0.490 | 1e-133 | |
| P38137 | 543 | Peroxisomal-coenzyme A sy | yes | no | 0.850 | 0.819 | 0.462 | 1e-114 | |
| Q0K844 | 509 | Probable sulfoacetate--Co | yes | no | 0.858 | 0.882 | 0.360 | 3e-76 | |
| O07610 | 513 | Long-chain-fatty-acid--Co | yes | no | 0.933 | 0.951 | 0.308 | 1e-70 | |
| O53306 | 503 | Long-chain-fatty-acid--Co | no | no | 0.891 | 0.926 | 0.323 | 2e-62 | |
| Q65FT5 | 478 | 2-succinylbenzoate--CoA l | no | no | 0.871 | 0.953 | 0.338 | 2e-58 | |
| A8ALR6 | 517 | Probable crotonobetaine/c | yes | no | 0.887 | 0.897 | 0.320 | 1e-57 | |
| B4EY25 | 518 | Probable crotonobetaine/c | yes | no | 0.931 | 0.940 | 0.314 | 1e-56 | |
| Q5KVX9 | 490 | 2-succinylbenzoate--CoA l | no | no | 0.881 | 0.940 | 0.323 | 2e-56 |
| >sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/513 (80%), Positives = 459/513 (89%), Gaps = 1/513 (0%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
M+ TL GLL V +F +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI GDVVA
Sbjct: 1 MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
LTFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDS+SKLLLT EGNA AQ A
Sbjct: 61 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120
Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
ASKL ISH TATLLDA S+L LS+A S+S ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G QE K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGGEK
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGGEK 420
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
ISPIEVDAVLL+HPD++Q VAFGVPD+KYGEEINCA+IPREG+ + EE++ FCKKN+AA
Sbjct: 421 ISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKNLAA 480
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512
FKVPKRVFIT+ LPKTASGKIQRRIV++HFL +
Sbjct: 481 FKVPKRVFITDNLPKTASGKIQRRIVAQHFLEK 513
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/514 (49%), Positives = 336/514 (65%), Gaps = 17/514 (3%)
Query: 10 LNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
L I +S RAL + S +L++S + + ++ + GI GD V + PN +EF
Sbjct: 6 LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65
Query: 69 VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA----AASKLN 124
V+ F AV RA PLN+ Y EFEFY+ D +SKL++ P EG+ AA AA KL+
Sbjct: 66 VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVP-EGSVAANTPAVRAAKKLS 124
Query: 125 ISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLT 182
+ A A L + + H E + NA L P DV L LHTSGTT RPK VPLT
Sbjct: 125 V--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLT 182
Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
NL S+ NI + Y+L D++ +V+PLFHVHG+L GLLS+ A+G +P +FSA
Sbjct: 183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPP--KFSAH 240
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
+FW++ I+Y ATWYTAVPTIHQI+L KP P++RFIRSCS+ LAP +LS+LE
Sbjct: 241 SFWKEFIQYGATWYTAVPTIHQILLRTPPPKP---LPRIRFIRSCSSPLAPPVLSKLEAT 297
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
F APVLEAYAMTEA+H M++NPLP HKP SVG+P G E+ ILD+ G G +GE+
Sbjct: 298 FRAPVLEAYAMTEASHQMTTNPLPPLV-HKPHSVGKPFGVELKILDQKGNEMPQGKEGEI 356
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
C+RG NVTKGY NNP ANKS+F +F TGD G D DGY+ + GRIKEL+NRGGEKIS
Sbjct: 357 CVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKIS 416
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481
P E+DAVL+ HPD+++AV F VPD+KYG++I AI P G + +++ + ++ VAAFK
Sbjct: 417 PAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFK 476
Query: 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515
+PK+ + T+ +PKTA+GK+QRR+V + F A
Sbjct: 477 IPKKFYFTDRIPKTATGKVQRRLVCDAFFNHSKA 510
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCS60 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/480 (46%), Positives = 295/480 (61%), Gaps = 35/480 (7%)
Query: 56 DVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA 115
D VA++ N +EF++ FL APLN Y EF FYL+D +SK + P +G
Sbjct: 63 DTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVP-KGTTK 121
Query: 116 AQAAASKLNISHATATLLDADSELTLSLAHSESDT---------------NAISKLTNDP 160
Q+ S++ S +T + + E D N + +P
Sbjct: 122 LQS--SEILKSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNP 179
Query: 161 ---------SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
SDVAL LHTSGTTS PK VPL N+ S NI + YKLT D + +V+PL
Sbjct: 180 VKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPL 239
Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
FHVHG++ LLS+F +V +P F FW +KYN W++ VPTI I+L+ +
Sbjct: 240 FHVHGLIGVLLSTFRTQGSVVVPDG--FHPKLFWDQFVKYNCNWFSCVPTISMIMLN--M 295
Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331
KP P +P +RFIRSCS++LAP +LE+ F APVLEAYAMTEA+H M+SN LP G
Sbjct: 296 PKPNP-FPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKR 353
Query: 332 KPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--GWF 389
KPG+VG+P G + ILD+ G GEV IRG NVT GY NNP+ANK F +F
Sbjct: 354 KPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYF 413
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
TGD GYFD +G+L L GRIKELINRGGEKISPIE+D ++LSHP I +AVAFGVPDD YG
Sbjct: 414 RTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYG 473
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
+ + AI+ ++G + EE++ F KK++A+FK+P +V+ ++LPKTA+GKIQRR+++E F
Sbjct: 474 QVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETF 533
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Non-essential protein involved in fatty acid metabolism. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 242/463 (52%), Gaps = 14/463 (3%)
Query: 49 AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT 108
AAG+ +G V++ PN + + L + P+N P + + L+ S+++L+ T
Sbjct: 57 AAGLGSGQTVSVYLPNGEQTARLLLGTMACGLVVNPINLLCQPAQLRYILAHSDTRLVFT 116
Query: 109 PAEGNAAAQAAASKLNIS-HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFL 167
+G AA + A + + T DA+S L H + + AL +
Sbjct: 117 WPDGEAAIREALREAGLDVPVLVTAPDANSLPALPATHDAASPLPPPQPDA----PALLM 172
Query: 168 HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
+TSGTT PKGV LTQ NL A+ +N+ + L +D + LPL+H++G++ ++
Sbjct: 173 YTSGTTGTPKGVLLTQRNLVANGTNVSREHCLGPADRVLATLPLYHINGLVVTAIAPLVH 232
Query: 228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL-DRHVAKPEPVYPKLRFIRS 286
G +V +P RFSAS FWQD ++ TW VPTI +L D H P V RF RS
Sbjct: 233 GGSVVMPM--RFSASAFWQDSARHGCTWLNVVPTIIAYLLNDPHGQAPAGV----RFCRS 286
Query: 287 CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAI 346
SA+L P E FG V+E MTE SNPL + G + GS+GRP G +
Sbjct: 287 ASAALPPEHHRAFEARFGIGVIETMGMTETAAPAFSNPL-DPGQRRIGSIGRPSGTRARV 345
Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHL 405
L G P G GE+ ++G +V GY P+ + AF GW TGD+GY D+DGY ++
Sbjct: 346 LGRDGKPAPDGQVGEIVLQGESVMAGYYKAPDITREAFTHDGWLRTGDLGYRDADGYFYI 405
Query: 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465
GR KELI +GGE I+P E+D LL HP + +A A GVPD YG+EI ++ RE + D
Sbjct: 406 SGRAKELIIKGGENIAPREIDEALLRHPGVLEAAAVGVPDPAYGQEIVAYVVMREAARCD 465
Query: 466 EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508
+ + C + + +K PK ELP+ SGK+QR + H
Sbjct: 466 DAALRAHCLRELGRYKTPKEFRFIAELPRGPSGKVQRLKLLNH 508
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Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|O07610|LCFB_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168) GN=lcfB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/509 (30%), Positives = 269/509 (52%), Gaps = 21/509 (4%)
Query: 14 IDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVI 70
+++ +S++ S++ +F +TY ++E ++R A L AG+ GD +AL N+ +F+I
Sbjct: 7 LEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFII 66
Query: 71 MFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL-----LTPAEGNAAAQAAASKLNI 125
F ++A P+N YTP E + L++ + K + L P + +L I
Sbjct: 67 AFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVI 126
Query: 126 SHAT--ATLLDADSELTLSLAHSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGV 179
T A AD E+ + + S + P D A+ L+TSGTT +PKG
Sbjct: 127 LCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTSGTTGKPKGA 186
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
LT NL ++ +++ + E D+ V LP+FHV + + + +GA V + +F
Sbjct: 187 MLTHQNLYSNANDVAGYLGMDERDNVVCALPMFHVFCLTVCMNAPLMSGATVLIEP--QF 244
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
S ++ ++ + + AT + VPT++ + K + + +R S AS+ +L+
Sbjct: 245 SPASVFKLVKQQQATIFAGVPTMYNYLFQHENGKKDD-FSSIRLCISGGASMPVALLTAF 303
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGA 358
EE FG +LE Y ++EA+ + NP D KPGS+G + E ++D +G
Sbjct: 304 EEKFGVTILEGYGLSEASPVTCFNPF--DRGRKPGSIGTSILHVENKVVDPLGRELPAHQ 361
Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGE 418
GE+ ++GPNV KGY P + A GW +TGD+ D DGY ++V R K++I GG
Sbjct: 362 VGELIVKGPNVMKGYYKMPMETEHALKDGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGY 421
Query: 419 KISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA 478
+ P EV+ VL SHPD+ +AV GVPD + GE + ++P+ S + EE++++ C+K++A
Sbjct: 422 NVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKR-SGVTEEDIMQHCEKHLA 480
Query: 479 AFKVPKRVFITNELPKTASGKIQRRIVSE 507
+K P + +++PK A+GK+ RR + +
Sbjct: 481 KYKRPAAITFLDDIPKNATGKMLRRALRD 509
|
Involved in the degradation of long-chain fatty acids. Bacillus subtilis (strain 168) (taxid: 224308) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O53306|FAC13_MYCTU Long-chain-fatty-acid--CoA ligase FadD13 OS=Mycobacterium tuberculosis GN=fadD13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 258/489 (52%), Gaps = 23/489 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY++++ L R A L A GI GD VAL PN+VEF +F + A A P+N
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E F LSDS SK+++ A A ++ + + ADS L L + +D
Sbjct: 90 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 148
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
A+ +D ++TSGTT PKGV T ++ ++ S+ S + D ++ LP
Sbjct: 149 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 205
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV + + F+A VTL + +F A+ W +++ AVP I + R
Sbjct: 206 MFHVAALTTVI---FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 260
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
V + E P R+ + A + P L ++ A V++ YA+TE+ T L+S
Sbjct: 261 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 315
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
ED K GS GR + ++A+ + GV +E G +GEV I+ + K Y N PEA + AF
Sbjct: 316 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
GWF TGDIG D +GYL++ R+K++I GGE + P E+++V++ P +++ G+P
Sbjct: 374 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 433
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRI 504
D+K+G EI AI+ + + + E++++ +C +A +K+PK+V +P+ +GKI + +
Sbjct: 434 DEKWG-EIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTV 492
Query: 505 VSEHFLAQV 513
+ E + A V
Sbjct: 493 LREQYSATV 501
|
Required for maintaining the appropriate mycolic acid composition and permeability of the envelope on its exposure to acidic pH. Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension. It has preference for the fatty acid with long chain length in the following order: hexacosanoic acid (C26), tetracosanoic acid (C24) and palmitic acid (C16). Mycobacterium tuberculosis (taxid: 1773) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/493 (33%), Positives = 246/493 (49%), Gaps = 37/493 (7%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
+ + R + G LT+ ++ ++ A RL + G+ GD AL N +E VI A
Sbjct: 14 ELTPDRMAVIQGDHKLTFIQLFHEAKKTAGRLKSFGLKNGDTAALLLTNRMEMVIAVHAC 73
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA---EGNAAAQAAASKLNISHATATL 132
LN + E + + SE+KLLLT E + Q A + ++I
Sbjct: 74 FLLGVRIVLLNTKLSMAERSYQIEHSEAKLLLTEKPFIEEHRGGQPARA-VDIEDVQNAA 132
Query: 133 LDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVS 191
+E I + D D A ++TSGTT RPKGV T N+ ++VS
Sbjct: 133 CPPVTE--------------IESIHLD--DAATIMYTSGTTGRPKGVMQTFANHYFSAVS 176
Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
+ ++ L E D +I LPLFH+ G L+ L S G V L RF A + +
Sbjct: 177 SALNL-GLQEHDRWLIALPLFHISG-LSALFKSVIYGMTVVLHQ--RFDAEEVLRSIKDQ 232
Query: 252 NATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA--PVLE 309
T + ++ Q +L R AK + LR + P LS LEE PV++
Sbjct: 233 QVT----IASVVQTMLSRLAAKVDRCPGSLRCLLLGGG---PAPLSLLEECKRKRLPVVQ 285
Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNV 369
+Y MTE +++ PE K GS G+P+ +++ G + G GE+ ++GP V
Sbjct: 286 SYGMTETCSQIATLA-PEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVKGPTV 344
Query: 370 TKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
KGY N ANK +F GWF TGDIGYFD DG+L+++ R +LI GGE I P EV+AVL
Sbjct: 345 MKGYLKNEAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVL 404
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
LSHP++A+A GV D +G+ + ++ S +DEEE+ FCK+ +A++KVPK
Sbjct: 405 LSHPNVAEAGVKGVDDKTWGKVPHAYLVA--DSPVDEEELSEFCKERLASYKVPKAFHFV 462
Query: 490 NELPKTASGKIQR 502
+ LP+ AS K+ R
Sbjct: 463 DRLPRNASNKLMR 475
|
Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 6 |
| >sp|A8ALR6|CAIC_CITK8 Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 237/486 (48%), Gaps = 22/486 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ ++E + R A+ +A+GI GD VAL N EF + + + A P+NA
Sbjct: 38 FSYASLNEEINRTANLFLASGIQKGDNVALHLDNCPEFFFCWFGLAKIGAIMVPINARLL 97
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAH-SESD 149
+E + L +S ++L++T AE + + + L+ ++ + +++H S+
Sbjct: 98 REESAWILQNSRAQLIVTSAEFYPMYRQILLEDDTLLNHICLIGENAPVEDNVSHFSQLK 157
Query: 150 TNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
+ L P D A L TSGTTSRPKGV +T NL + L E D
Sbjct: 158 DQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSSWQCALREDDVY 217
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
+ V+P FH+ +++F+AG+ L ++SA FW + KY AT +P + +
Sbjct: 218 LTVMPAFHIDCQCTAAMAAFSAGSTFVL--IEKYSARAFWGQVRKYRATVTECIPMMIRT 275
Query: 266 VLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
++ A PE LR F + S ++R FG +L +Y MTE T +
Sbjct: 276 LM-VQPASPEERQHCLREVMFYLNLSVQEKDAFIAR----FGVRLLTSYGMTE-TIVGII 329
Query: 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPE 378
P D P S+GRP E I DE G GE+CI+G + K Y PE
Sbjct: 330 GDRPGDKRRWP-SIGRPGFCYEADIRDEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPE 388
Query: 379 ANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A GW HTGD GY D +G+ + V R +I RGGE +S IE++ ++ +HP I
Sbjct: 389 ATAKALEANGWLHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCIELENIISAHPKIQD 448
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V G+ D E I ++ EG + EEE FC++N+A FKVP + I N+LP+ S
Sbjct: 449 IVVIGIHDSIRDEAIKAFVVLNEGETLTEEEFFAFCEQNMAKFKVPSFLEIRNDLPRNCS 508
Query: 498 GKIQRR 503
GKI ++
Sbjct: 509 GKIIKK 514
|
Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|B4EY25|CAIC_PROMH Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/518 (31%), Positives = 251/518 (48%), Gaps = 31/518 (5%)
Query: 6 LIGLLNQVIDQFSSKRAL---SVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALT 61
L + + + + + K AL S GK +YS ++E + RAA+ A GI GD VAL
Sbjct: 9 LRQMWDDLAEVYDKKTALIFESAQGKVRQFSYSELNEEINRAANLFHACGIKKGDHVALH 68
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
N EF + + + A P+NA + +E + ++ ++ ++T + Q
Sbjct: 69 LDNCPEFFFCWFGLAKIGAVMVPINARFMYEESAWIINHCQAHFVVTSDNFSPIYQPM-- 126
Query: 122 KLNISHATATLLDADSELTLSLAH------SESDTNAISKLTNDP---SDVALFLHTSGT 172
L+ H+ T L +E L SE + ++ + P D A L TSGT
Sbjct: 127 -LHDKHSPLTQLFLITENCLPTEQGVVDFLSEKAKHPVTLNHHTPLSVDDTAEILFTSGT 185
Query: 173 TSRPKGVPLTQNNL--AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230
TS+PKGV +T NL A S+ ++ L E D + V+P FH+ L +F+ GA
Sbjct: 186 TSQPKGVVITHYNLRFAGYYSSWQNA--LREDDIYLTVMPAFHIDCQCTASLPAFSVGAT 243
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290
L ++SA FW+ ++KY AT +P + + ++ + V+ P+ KLR + +
Sbjct: 244 FVL--LEKYSARAFWKQILKYQATVTECIPMMMRTLMAQPVS-PDEKQHKLREVMF-YLN 299
Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDE 349
LA E F +L +Y MTE + + P D P S+GRP + I D+
Sbjct: 300 LADEEKDAFIERFNVRLLTSYGMTETIVGLIGD-RPGDKRRWP-SIGRPGFCYQAQIRDK 357
Query: 350 IGVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHL 405
G GE+C++G P T K Y N P+A + A GW HTGD GY D +G+ +
Sbjct: 358 QNQQVPNGVVGEICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYF 417
Query: 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465
V R +I RGGE +S IE++ ++ SHP I GVPDD E I ++ +G +
Sbjct: 418 VDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLS 477
Query: 466 EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
EE FC++N+A FKVP V LP+ SGK+ ++
Sbjct: 478 EEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKK 515
|
Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle. Proteus mirabilis (strain HI4320) (taxid: 529507) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5KVX9|MENE_GEOKA 2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=menE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 241/491 (49%), Gaps = 30/491 (6%)
Query: 17 FSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
F + ++VS G+ T++ ++E A RL AG+ GD+VAL N +E + + A+
Sbjct: 13 FLTPERIAVSDGRRTKTFAELYEAAAVWARRLAQAGVKEGDIVALLMKNRIEMIEIIHAL 72
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
A N T E + L DS ++L + E A LD
Sbjct: 73 FFLGARVLLQNVRLTSYELGWQLDDSGARLAIADEE-----------------LAGSLDG 115
Query: 136 DSE-LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
D LT+ + + + K T D +VA ++TSGTT PKGV T N S
Sbjct: 116 DGRVLTVGAVAALPEVDVSLKETCDLEEVATIMYTSGTTGTPKGVLQTYGNHWWSAVGSA 175
Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT 254
L E D + +PLFH+ G L+ + S G + L + + W +++ + T
Sbjct: 176 LNLGLHERDCWLAAVPLFHISG-LSIAMRSVIYGMPMRLQTSFDPKEANEW--IMRGDVT 232
Query: 255 WYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
+ ++ +L R VA+ E YP AP L + G PV + Y M
Sbjct: 233 ----IMSVVAAMLQRMVAELGEARYPDTFRCMLLGGGPAPRPLLEACKEKGIPVYQTYGM 288
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372
TE +++ PE K GS G+P+ E+ IL + G P GE+ ++GPNVTKG
Sbjct: 289 TETASQIATLA-PEYSLTKLGSAGKPLFPAELCILKD-GKPAAPHEAGEIVVKGPNVTKG 346
Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
Y PEA A GWF TGDIGY D DG+L+++ R +LI GGE + P EV+AVLLSH
Sbjct: 347 YWQRPEATAQAIRGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSH 406
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNEL 492
PD+ +A GV ++ +G+ + + G++ DE + FC++ +A +KVP R++ +EL
Sbjct: 407 PDVEEAGVTGVENETWGQVPYAFVRLKRGASPDEAALRAFCRERLAKYKVPARIYFVDEL 466
Query: 493 PKTASGKIQRR 503
P+ A+ K+ RR
Sbjct: 467 PRNAAQKLLRR 477
|
Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA). Geobacillus kaustophilus (strain HTA426) (taxid: 235909) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | ||||||
| 302143864 | 523 | unnamed protein product [Vitis vinifera] | 1.0 | 1.0 | 0.839 | 0.0 | |
| 225470747 | 524 | PREDICTED: putative peroxisomal-coenzyme | 1.0 | 0.998 | 0.839 | 0.0 | |
| 399630432 | 529 | 4-hydroxycinnamoyl-CoA ligase 2 [Coffea | 1.0 | 0.988 | 0.792 | 0.0 | |
| 395146536 | 512 | acyl CoA ligase [Linum usitatissimum] | 0.969 | 0.990 | 0.838 | 0.0 | |
| 255539437 | 521 | AMP dependent CoA ligase, putative [Rici | 0.996 | 1.0 | 0.824 | 0.0 | |
| 224137016 | 524 | acyl:coa ligase [Populus trichocarpa] gi | 1.0 | 0.998 | 0.824 | 0.0 | |
| 16797908 | 523 | putative acyl-CoA synthetase [Capsicum a | 1.0 | 1.0 | 0.785 | 0.0 | |
| 380042376 | 526 | acyl-activating enzyme 8 [Cannabis sativ | 0.994 | 0.988 | 0.777 | 0.0 | |
| 225426389 | 525 | PREDICTED: putative peroxisomal-coenzyme | 0.978 | 0.975 | 0.789 | 0.0 | |
| 297819514 | 514 | AMP-dependent synthetase and ligase fami | 0.978 | 0.996 | 0.807 | 0.0 |
| >gi|302143864|emb|CBI22725.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/523 (83%), Positives = 483/523 (92%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
ME +TL GLL QV +F S+RALSVSGKFDLTY+R+H+LVE AAS ++A G+ AGDVVAL
Sbjct: 1 MESLTLTGLLKQVAGEFPSRRALSVSGKFDLTYARLHQLVEGAASLILAGGVKAGDVVAL 60
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPNTVEFVIMFLAVIR RATAAPLN+AYT DEFEFYLSDSESKLLLT EGN AAQAAA
Sbjct: 61 TFPNTVEFVIMFLAVIRVRATAAPLNSAYTADEFEFYLSDSESKLLLTSQEGNEAAQAAA 120
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SKL I+HATA+L +A++++ LSL HSE D ++++KL N+PSDVALFLHTSGTTSRPKGVP
Sbjct: 121 SKLKITHATASLTEAEAQVNLSLIHSEPDPHSVAKLVNEPSDVALFLHTSGTTSRPKGVP 180
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
L+Q NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLPAAGRFS
Sbjct: 181 LSQLNLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFS 240
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
ASTFW DM+KY+ATWYTAVPTIHQI+LDRH++KPEPVYPKLRFIRSCSASLAP I++RLE
Sbjct: 241 ASTFWSDMLKYDATWYTAVPTIHQIILDRHLSKPEPVYPKLRFIRSCSASLAPAIMARLE 300
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
EAFGAPVLEAYAMTEATHLM+SNPLPE+GPHKPGSVGRPVGQE+AILDE GV QE G
Sbjct: 301 EAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEANVSG 360
Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKI 420
EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+G+FD DGYLHLVGRIKELINRGGEKI
Sbjct: 361 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRGGEKI 420
Query: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS+IDE EV RFCKKN+AAF
Sbjct: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSDIDEAEVTRFCKKNLAAF 480
Query: 481 KVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
KVPK+VFIT+ LPKTA+GKIQRRIV+EHFLAQ+S AKVPKFGA
Sbjct: 481 KVPKKVFITDSLPKTATGKIQRRIVAEHFLAQISTAKVPKFGA 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470747|ref|XP_002267459.1| PREDICTED: putative peroxisomal-coenzyme A synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/523 (83%), Positives = 483/523 (92%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
ME +TL GLL QV +F S+RALSVSGKFDLTY+R+H+LVE AAS ++A G+ AGDVVAL
Sbjct: 2 MESLTLTGLLKQVAGEFPSRRALSVSGKFDLTYARLHQLVEGAASLILAGGVKAGDVVAL 61
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPNTVEFVIMFLAVIR RATAAPLN+AYT DEFEFYLSDSESKLLLT EGN AAQAAA
Sbjct: 62 TFPNTVEFVIMFLAVIRVRATAAPLNSAYTADEFEFYLSDSESKLLLTSQEGNEAAQAAA 121
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SKL I+HATA+L +A++++ LSL HSE D ++++KL N+PSDVALFLHTSGTTSRPKGVP
Sbjct: 122 SKLKITHATASLTEAEAQVNLSLIHSEPDPHSVAKLVNEPSDVALFLHTSGTTSRPKGVP 181
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
L+Q NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLPAAGRFS
Sbjct: 182 LSQLNLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFS 241
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
ASTFW DM+KY+ATWYTAVPTIHQI+LDRH++KPEPVYPKLRFIRSCSASLAP I++RLE
Sbjct: 242 ASTFWSDMLKYDATWYTAVPTIHQIILDRHLSKPEPVYPKLRFIRSCSASLAPAIMARLE 301
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
EAFGAPVLEAYAMTEATHLM+SNPLPE+GPHKPGSVGRPVGQE+AILDE GV QE G
Sbjct: 302 EAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEANVSG 361
Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKI 420
EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+G+FD DGYLHLVGRIKELINRGGEKI
Sbjct: 362 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRGGEKI 421
Query: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS+IDE EV RFCKKN+AAF
Sbjct: 422 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSDIDEAEVTRFCKKNLAAF 481
Query: 481 KVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
KVPK+VFIT+ LPKTA+GKIQRRIV+EHFLAQ+S AKVPKFGA
Sbjct: 482 KVPKKVFITDSLPKTATGKIQRRIVAEHFLAQISTAKVPKFGA 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|399630432|gb|AFP49809.1| 4-hydroxycinnamoyl-CoA ligase 2 [Coffea arabica] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/529 (79%), Positives = 468/529 (88%), Gaps = 6/529 (1%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
ME +TL GLL +V +F S+RA+SV G+FDL+++R+H+LVER A+RLVAAG+ GDV+AL
Sbjct: 1 MENLTLSGLLIKVAAKFPSRRAISVPGRFDLSHARLHQLVERTATRLVAAGVQPGDVIAL 60
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPN+VEFVI FLAVIRARATAAPLN AYT DEF+FYLSDS+SK+LLT +G+A AQAAA
Sbjct: 61 TFPNSVEFVIAFLAVIRARATAAPLNPAYTADEFQFYLSDSDSKILLTSKQGSAPAQAAA 120
Query: 121 SKLNISHATATLLDADSELTLSLAHS------ESDTNAISKLTNDPSDVALFLHTSGTTS 174
SKLNI H T L DADS++ LS + S E D N SKL NDPSD++LFLHTSGTTS
Sbjct: 121 SKLNIPHVTVALPDADSDVALSSSLSQYESDPEPDPNLSSKLINDPSDISLFLHTSGTTS 180
Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
RPKGVPLTQ NL +SV+NIKSVY++TESDSTVIVLPLFHVHG+LAGLLSS AG AVTLP
Sbjct: 181 RPKGVPLTQLNLVSSVNNIKSVYRITESDSTVIVLPLFHVHGLLAGLLSSVGAGGAVTLP 240
Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294
AAGRFSASTFW DM YNATWYTAVPTIHQI+LDRH+ PEPVYP+LRFIRSCSA+LAP
Sbjct: 241 AAGRFSASTFWSDMKNYNATWYTAVPTIHQIILDRHLNSPEPVYPRLRFIRSCSAALAPS 300
Query: 295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQ 354
IL+RLEEAFGAPVLEAYAMTEA+HLM+SNPLP+DGPH PGSVG+PVGQE+AILDE G PQ
Sbjct: 301 ILARLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHVPGSVGKPVGQEMAILDENGKPQ 360
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
E A GEVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+GY DSDGYLHLVGRIKELIN
Sbjct: 361 EANANGEVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDLGYLDSDGYLHLVGRIKELIN 420
Query: 415 RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474
RGGEKISPIEVDAVLLSHPD+AQAVAFGVPDDKYGEEINCA+IPREG+NIDE EV R CK
Sbjct: 421 RGGEKISPIEVDAVLLSHPDVAQAVAFGVPDDKYGEEINCAVIPREGANIDESEVSRHCK 480
Query: 475 KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
N+A FKVPK+VFIT+ LPKTASGKIQRRIV+EHFLAQ+S AKVPKFGA
Sbjct: 481 TNLAGFKVPKKVFITDSLPKTASGKIQRRIVAEHFLAQISTAKVPKFGA 529
|
Source: Coffea arabica Species: Coffea arabica Genus: Coffea Family: Rubiaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395146536|gb|AFN53690.1| acyl CoA ligase [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/507 (83%), Positives = 465/507 (91%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL GLL +V +F +RALSVSGKFDLT++R+ ELVERAASRLV+AGI GDVVALTFPN
Sbjct: 6 TLTGLLKRVAGEFPDRRALSVSGKFDLTHARLDELVERAASRLVSAGIKPGDVVALTFPN 65
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
TVEFV+MFLAVIRARATAAPLNAAYT +EFEFYLSDSESKLL+T EGNAAA+AAASKL
Sbjct: 66 TVEFVVMFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLVTSREGNAAAEAAASKLQ 125
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
++ TA L DSEL LSL+ SE+ N+I++L NDPSDVALFLHTSGTTSRPKGVPLTQ
Sbjct: 126 VTQVTAGLTGEDSELILSLSPSETGDNSITQLVNDPSDVALFLHTSGTTSRPKGVPLTQL 185
Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
NLA+SV NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSSF AGAAVTLPA+GRFSAS+F
Sbjct: 186 NLASSVQNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSFVAGAAVTLPASGRFSASSF 245
Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
WQDM+KYNATWYTAVPTIHQI+LDRH + PEPVYPKLRFIRSCSASLAP IL+RLEEAFG
Sbjct: 246 WQDMLKYNATWYTAVPTIHQIILDRHGSSPEPVYPKLRFIRSCSASLAPSILARLEEAFG 305
Query: 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCI 364
APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG+PVGQE+AILDE G Q +KGEVCI
Sbjct: 306 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILDESGAIQGPDSKGEVCI 365
Query: 365 RGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIE 424
RGPNVTKGYKNNP+ANK+ FLFGWFHTGDIGYFDSDGYL+LVGRIKELINRGGEKISPIE
Sbjct: 366 RGPNVTKGYKNNPDANKAGFLFGWFHTGDIGYFDSDGYLNLVGRIKELINRGGEKISPIE 425
Query: 425 VDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPK 484
VDAVLLSHPDIAQAV FGVPDDKYGEEINCAIIPREGS IDE EV FCKKN+AAFKVPK
Sbjct: 426 VDAVLLSHPDIAQAVCFGVPDDKYGEEINCAIIPREGSKIDEAEVQSFCKKNLAAFKVPK 485
Query: 485 RVFITNELPKTASGKIQRRIVSEHFLA 511
+VFITN++PKTASGKIQRRIV++HF++
Sbjct: 486 KVFITNDVPKTASGKIQRRIVAQHFIS 512
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539437|ref|XP_002510783.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549898|gb|EEF51385.1| AMP dependent CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/523 (82%), Positives = 479/523 (91%), Gaps = 2/523 (0%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
M+ +TL GLL +V +F RA+SVSGKFDL++S+++ELV++AASRLVAAGI DVVAL
Sbjct: 1 MDSLTLTGLLKRVALEFPDNRAVSVSGKFDLSHSQLNELVDQAASRLVAAGIKPSDVVAL 60
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPNTVEF+I+FLAVIR RATAAPLNAAYT +EFEFYLSDSESKLLLTP EGN++AQ+AA
Sbjct: 61 TFPNTVEFIILFLAVIRVRATAAPLNAAYTTEEFEFYLSDSESKLLLTPLEGNSSAQSAA 120
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SKLNI HATA L ADSEL+LSL ESD N++S+LT++PSDVALFLHTSGTTSRPKGVP
Sbjct: 121 SKLNIPHATAVLPAADSELSLSLP--ESDFNSLSQLTDEPSDVALFLHTSGTTSRPKGVP 178
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
LTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG++AGLLSS AAGAAV LPAAGRFS
Sbjct: 179 LTQLNLASSVRNIKAVYKLTESDSTVIVLPLFHVHGLVAGLLSSLAAGAAVALPAAGRFS 238
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
ASTFW+DM+KY+ATWYTAVPTIHQI+LDRH+ PE YPKLRFIRSCSASLAP IL RLE
Sbjct: 239 ASTFWKDMVKYSATWYTAVPTIHQIILDRHLNNPEADYPKLRFIRSCSASLAPAILDRLE 298
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
E FGAPVLEAYAMTEATHLMSSNPLPEDGPHK GSVG+PVGQE+AILDE GV Q+ A G
Sbjct: 299 ENFGAPVLEAYAMTEATHLMSSNPLPEDGPHKAGSVGKPVGQEMAILDENGVAQKANASG 358
Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKI 420
EVCIRGPNVTKGYKNNPEANK+AF FGWFHTGD+GY +SDGYLHLVGRIKELINRGGEKI
Sbjct: 359 EVCIRGPNVTKGYKNNPEANKAAFQFGWFHTGDLGYLNSDGYLHLVGRIKELINRGGEKI 418
Query: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
SPIEVDAVLLSHP+IAQAVAFGVPDDKYGEEINCAIIPR+GSNIDE EVLR+CKKN+AAF
Sbjct: 419 SPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEINCAIIPRDGSNIDEAEVLRYCKKNLAAF 478
Query: 481 KVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
KVPK+VFIT+ LPKTASGKIQRRIV+EHFLAQ+S A+VPKFGA
Sbjct: 479 KVPKKVFITDTLPKTASGKIQRRIVAEHFLAQISTARVPKFGA 521
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137016|ref|XP_002322473.1| acyl:coa ligase [Populus trichocarpa] gi|222869469|gb|EEF06600.1| acyl:coa ligase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/524 (82%), Positives = 477/524 (91%), Gaps = 1/524 (0%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
M +TL GLL +V +F ++RA+SVSGK DLT++R+HE++ERAASRLVA+GI GDVVAL
Sbjct: 1 MATLTLTGLLKRVAGEFPNRRAVSVSGKLDLTHARLHEIIERAASRLVASGIKPGDVVAL 60
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPNTVEFVIMFLAVIRARATAAPLNAAYT +EFEFYLSDSESKLLLT EGN++AQAAA
Sbjct: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTTEEFEFYLSDSESKLLLTAQEGNSSAQAAA 120
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDT-NAISKLTNDPSDVALFLHTSGTTSRPKGV 179
SKL I HATATL ADSEL LS + +ESD N IS+L NDPSD+ALFLHTSGTTSRPKGV
Sbjct: 121 SKLKIPHATATLSGADSELNLSPSPTESDDPNLISQLINDPSDMALFLHTSGTTSRPKGV 180
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
PLTQ NLA+SV+NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS AAGA+V LP+AGRF
Sbjct: 181 PLTQLNLASSVNNIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLAAGASVALPSAGRF 240
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
SASTFW+DM KYNATWYTAVPTIHQI+LDRH + PE VYPKLRFIRSCSASLAP IL+RL
Sbjct: 241 SASTFWKDMDKYNATWYTAVPTIHQIILDRHFSNPESVYPKLRFIRSCSASLAPAILARL 300
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
EEAF PVLEAYAMTEATHLM SNPLPEDGPHK GSVG+PVGQE+AIL+E GV Q+
Sbjct: 301 EEAFNTPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILNENGVIQDANVS 360
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GEVC+RGPNVTKGYK+NPEANK AF FGWFHTGD+GYFDSDGYLHLVGRIKELINRGGEK
Sbjct: 361 GEVCLRGPNVTKGYKHNPEANKVAFQFGWFHTGDLGYFDSDGYLHLVGRIKELINRGGEK 420
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
ISP+EVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR+G++IDEEEVLRFCKKN+AA
Sbjct: 421 ISPVEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRDGTDIDEEEVLRFCKKNLAA 480
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
FKVPK+VF+T+ LP+TASGKIQRRIVSEHFLAQ+S A VPKFGA
Sbjct: 481 FKVPKKVFLTDSLPETASGKIQRRIVSEHFLAQISTASVPKFGA 524
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16797908|gb|AAL29212.1|AF354454_1 putative acyl-CoA synthetase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/523 (78%), Positives = 465/523 (88%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
ME +TL G L V +++ S RA+SVSG+ D+T++R+ +LVERAAS++VAAG+ GDVVAL
Sbjct: 1 MECLTLTGFLKHVAEKYPSHRAISVSGRLDITHARLQQLVERAASQIVAAGVKPGDVVAL 60
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
TFPNT+EFVIMFLAVIRARATAAPLN+AY +EFEFYLSDSESKLLLT EGN AAQAAA
Sbjct: 61 TFPNTIEFVIMFLAVIRARATAAPLNSAYMAEEFEFYLSDSESKLLLTAKEGNEAAQAAA 120
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SKL I + TL DS++ S A ESD ++SK+ N+PSDV LFLHTSGTTSRPKGVP
Sbjct: 121 SKLKIPRISVTLSQPDSDVAFSPAPPESDLESMSKIVNEPSDVGLFLHTSGTTSRPKGVP 180
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
L Q NL +SV+NIKSVYKL+++DSTVIVLPLFHVHG++AGLLSS AGAAVTLPAAGRFS
Sbjct: 181 LAQLNLLSSVNNIKSVYKLSDTDSTVIVLPLFHVHGLIAGLLSSLGAGAAVTLPAAGRFS 240
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
ASTFW DM KYNATWYTAVPTIHQI+LDRH++KPE YPKLRFIRSCSA+LAP +++RLE
Sbjct: 241 ASTFWSDMKKYNATWYTAVPTIHQILLDRHLSKPESDYPKLRFIRSCSAALAPSVMARLE 300
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKG 360
EAF APVLEAYAMTEATHLM+SNPLPEDGPH PGSVG+PVGQE+ IL+E G Q AKG
Sbjct: 301 EAFAAPVLEAYAMTEATHLMASNPLPEDGPHIPGSVGKPVGQEMGILNENGELQGPNAKG 360
Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKI 420
EVCIRGPNVTKGYKNNPEANKSAF FGWFHTGD+GY DSDGYLHLVGRIKELINRGGEKI
Sbjct: 361 EVCIRGPNVTKGYKNNPEANKSAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKI 420
Query: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
SPIE+DAVL+SHP+IAQAVAFGVPDDKYGEEINCA+IPREGSNIDE EVLRFCKKN+AAF
Sbjct: 421 SPIELDAVLVSHPEIAQAVAFGVPDDKYGEEINCAVIPREGSNIDEAEVLRFCKKNLAAF 480
Query: 481 KVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
KVPK+VF+T+ LPKTASGKIQRR+V+EHFLAQ+S AKVPKFGA
Sbjct: 481 KVPKKVFMTDSLPKTASGKIQRRLVAEHFLAQISTAKVPKFGA 523
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042376|gb|AFD33352.1| acyl-activating enzyme 8 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/522 (77%), Positives = 460/522 (88%), Gaps = 2/522 (0%)
Query: 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
+TL GLL + +F +RA+S+SGK+ LT++R+ E+V+ AAS L+A+GI GDVVALTFP
Sbjct: 5 LTLTGLLKKAAVEFPDRRAISLSGKYHLTHARLQEIVDHAASLLLASGIGHGDVVALTFP 64
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
NTVE+++MFLAVIR RA AAPLNAAYT +EFEFYLSDSESKLL+T EG AAQAAASKL
Sbjct: 65 NTVEYIVMFLAVIRCRAVAAPLNAAYTAEEFEFYLSDSESKLLITGPEGIEAAQAAASKL 124
Query: 124 NISHATATLLDADSELTL--SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
NI TATL + L S A++ES ++++++TNDPSDVALFLHTSGTTSRPKGVPL
Sbjct: 125 NIVRVTATLPGSGDGLIALSSSANNESSLDSVAEITNDPSDVALFLHTSGTTSRPKGVPL 184
Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
TQ NLA+SV NIKSVYKLTESDSTV+VLPLFHVHGM+AGLLSS AGA+VTLPAAGRFSA
Sbjct: 185 TQLNLASSVQNIKSVYKLTESDSTVVVLPLFHVHGMIAGLLSSLIAGASVTLPAAGRFSA 244
Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE 301
STFW DMI NATWYTAVPTIHQI+L+RH+ KPEP YPKLRFIRSCSASLAP I++RLEE
Sbjct: 245 STFWSDMIACNATWYTAVPTIHQIILERHLNKPEPTYPKLRFIRSCSASLAPSIMARLEE 304
Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGE 361
+FGAPVLEAYAMTEA HLM+SNPLPEDG HKPGSVG+PVGQE+AILD+ G Q G GE
Sbjct: 305 SFGAPVLEAYAMTEAAHLMASNPLPEDGGHKPGSVGKPVGQEMAILDQNGSAQLAGVSGE 364
Query: 362 VCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
VCIRGPNVTKGYKNNPEANK+AF FGWFHTGD+GYFD DGYLHLVGRIKELINRGGEKIS
Sbjct: 365 VCIRGPNVTKGYKNNPEANKAAFQFGWFHTGDVGYFDEDGYLHLVGRIKELINRGGEKIS 424
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481
PIEVDAVLLSHPDI+ AVAFGVPDDKYGEEINCA+IPREGS +DE+ VLRFCKKN+A FK
Sbjct: 425 PIEVDAVLLSHPDISHAVAFGVPDDKYGEEINCAVIPREGSEVDEDVVLRFCKKNLATFK 484
Query: 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
VPK+VFIT+ LPKTA+GKIQRRIV+EHFLAQ+S AKVPKFGA
Sbjct: 485 VPKKVFITDSLPKTATGKIQRRIVAEHFLAQISTAKVPKFGA 526
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426389|ref|XP_002272145.1| PREDICTED: putative peroxisomal-coenzyme A synthetase [Vitis vinifera] gi|297742535|emb|CBI34684.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/512 (78%), Positives = 459/512 (89%)
Query: 12 QVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIM 71
Q ++F S+RALSVSGK DLT++R+ EL+++AAS L+A+GIN GDVVALTFPNT+E V++
Sbjct: 14 QKAEEFPSRRALSVSGKLDLTHARLDELIDKAASLLLASGINPGDVVALTFPNTIESVVV 73
Query: 72 FLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT 131
FLAVIR RATAAPLN+AYT +EFEFYLSDSESKLL+T EGN AQAAASKL I TAT
Sbjct: 74 FLAVIRCRATAAPLNSAYTTEEFEFYLSDSESKLLVTSQEGNQPAQAAASKLKIPCITAT 133
Query: 132 LLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191
+ D ++ LS +S+ +N+I+ + NDP+DVALFLHTSGTTSRPKGVPLTQ NLA+SV
Sbjct: 134 VSDTGDDVILSDYNSDLKSNSINSIVNDPADVALFLHTSGTTSRPKGVPLTQLNLASSVR 193
Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
NIKSVYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLP+AGRFSASTFW DMI Y
Sbjct: 194 NIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSLVAGAAVTLPSAGRFSASTFWSDMIAY 253
Query: 252 NATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
ATWYTAVPTIHQI+LDRH++KPEP PKLRFIRSCSASLAP IL+RLEE+FGAPVLEAY
Sbjct: 254 KATWYTAVPTIHQIILDRHLSKPEPSLPKLRFIRSCSASLAPSILARLEESFGAPVLEAY 313
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
AMTEATHLM+SNPLPE+G HKPGSVG+PVGQE+AILDE GV Q+ GEVCIRGPNVTK
Sbjct: 314 AMTEATHLMASNPLPENGEHKPGSVGKPVGQEMAILDENGVLQQPNVSGEVCIRGPNVTK 373
Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
GYKNNPEANK+AF FGWFHTGD+G+ DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS
Sbjct: 374 GYKNNPEANKAAFSFGWFHTGDVGFLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 433
Query: 432 HPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNE 491
HPD+AQ VAFGVPDDKYGEEINCAIIPREGS++DE EVLRFCKKN+A FKVPK+VF+T+
Sbjct: 434 HPDVAQGVAFGVPDDKYGEEINCAIIPREGSDLDESEVLRFCKKNLATFKVPKKVFMTDT 493
Query: 492 LPKTASGKIQRRIVSEHFLAQVSAAKVPKFGA 523
LPKTA+GKIQRR+V+EHFLAQ+S AK+PKFGA
Sbjct: 494 LPKTATGKIQRRLVAEHFLAQISTAKIPKFGA 525
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819514|ref|XP_002877640.1| AMP-dependent synthetase and ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323478|gb|EFH53899.1| AMP-dependent synthetase and ligase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/513 (80%), Positives = 459/513 (89%), Gaps = 1/513 (0%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLV-AAGINAGDVVA 59
M+ TL GLL V +F +RALSVSGKFDLT++R+H+L+ERAASRLV AAGI GDVVA
Sbjct: 1 MDSDTLTGLLENVARKFPDRRALSVSGKFDLTHARLHDLIERAASRLVSAAGIKPGDVVA 60
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
LTFPNTVEFVIMFLAVIRARATAAPLN+AYT +EFEFYLSDS+SKLLLT EGNA AQ A
Sbjct: 61 LTFPNTVEFVIMFLAVIRARATAAPLNSAYTAEEFEFYLSDSDSKLLLTAKEGNAPAQEA 120
Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
ASKL ISH TA+LLDA S+L LS+A S+S ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTASLLDAGSDLALSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
PLTQ NL +SV NIK+VYKLTESDSTVIVLPLFHVHG+LAGLLSS AGAAVTLPAAGRF
Sbjct: 181 PLTQLNLVSSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PEP YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPEPEYPKLRFIRSCSASLAPVILSRL 300
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G QE K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 420
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
ISPIEVDAVLL+HPD++Q VAFGVPD+KYGEEINCA+IPREG+ + EE++ FCKKN+AA
Sbjct: 421 ISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKNLAA 480
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512
FKVPK+VFIT+ LPKTASGKIQRRIV++HFL +
Sbjct: 481 FKVPKKVFITDNLPKTASGKIQRRIVAQHFLEK 513
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 523 | ||||||
| TAIR|locus:2101368 | 514 | AAE3 "ACYL-ACTIVATING ENZYME 3 | 0.975 | 0.992 | 0.745 | 4.4e-203 | |
| POMBASE|SPCC1827.03c | 512 | SPCC1827.03c "acetyl-CoA ligas | 0.954 | 0.974 | 0.460 | 3.6e-112 | |
| DICTYBASE|DDB_G0279561 | 542 | DDB_G0279561 "AMP-dependent sy | 0.711 | 0.686 | 0.517 | 2.5e-104 | |
| UNIPROTKB|G4N0E5 | 522 | MGG_06199 "Peroxisomal-coenzym | 0.925 | 0.927 | 0.452 | 8.6e-104 | |
| ASPGD|ASPL0000073499 | 506 | fatD [Emericella nidulans (tax | 0.933 | 0.964 | 0.443 | 3.3e-102 | |
| SGD|S000000426 | 543 | PCS60 "Peroxisomal protein tha | 0.655 | 0.631 | 0.527 | 2.5e-100 | |
| TIGR_CMR|BA_4763 | 563 | BA_4763 "long-chain-fatty-acid | 0.701 | 0.651 | 0.343 | 1.8e-64 | |
| TIGR_CMR|CHY_0437 | 556 | CHY_0437 "long-chain-fatty-aci | 0.680 | 0.640 | 0.342 | 2.9e-64 | |
| TIGR_CMR|CHY_1731 | 546 | CHY_1731 "long-chain-fatty-aci | 0.948 | 0.908 | 0.325 | 3.8e-62 | |
| TIGR_CMR|BA_1091 | 510 | BA_1091 "long-chain-fatty-acid | 0.896 | 0.919 | 0.314 | 3.4e-61 |
| TAIR|locus:2101368 AAE3 "ACYL-ACTIVATING ENZYME 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 381/511 (74%), Positives = 425/511 (83%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVA 59
M+ TL GLL V +F +RALSVSGKF+LT++R+H+L+ERAASRLV+ AGI GDVVA
Sbjct: 1 MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSDAGIKPGDVVA 60
Query: 60 LTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXX 119
LTFPNTVEFVIMFLAVIR YT +EFEFYLSDS+SKLLLT EGN
Sbjct: 61 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNAPAQEA 120
Query: 120 XSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
SKL ISH TATLLDA S+L LS+A S+S ++ ++L N P D ALFLHTSGTTSRPKGV
Sbjct: 121 ASKLKISHVTATLLDAGSDLVLSVADSDSVVDSATELVNHPDDGALFLHTSGTTSRPKGV 180
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRF 239
PLTQ NLA+SV NIK+VYKLTESDSTVIVLPLFHVHG+ GRF
Sbjct: 181 PLTQLNLASSVKNIKAVYKLTESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRF 240
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
SA+TFW DM KYNATWYTAVPTIHQI+LDRH + PE YPKLRFIRSCSASLAPVILSRL
Sbjct: 241 SATTFWPDMKKYNATWYTAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRL 300
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAK 359
EEAFGAPVLEAYAMTEATHLMSSNPLPE+GPHKPGSVG+PVGQE+AIL+E G QE K
Sbjct: 301 EEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPNNK 360
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GEVCIRGPNVTKGYKNNPEANK+ F FGWFHTGDIGYFD+DGYLHLVGRIKELINRGGEK
Sbjct: 361 GEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRGGEK 420
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
ISPIEVDAVLL+HPD++Q VAFGVPD+KYGEEINCA+IPREG+ + EE++ FCKKN+AA
Sbjct: 421 ISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKNLAA 480
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFL 510
FKVPKRVFIT+ LPKTASGKIQRRIV++HFL
Sbjct: 481 FKVPKRVFITDNLPKTASGKIQRRIVAQHFL 511
|
|
| POMBASE|SPCC1827.03c SPCC1827.03c "acetyl-CoA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
Identities = 238/517 (46%), Positives = 320/517 (61%)
Query: 10 LNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
L I +S RAL + S +L++S + + ++ + GI GD V + PN +EF
Sbjct: 6 LYSAIQGDASARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEF 65
Query: 69 VIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEG----NXXXXXXXSKLN 124
V+ F AV Y EFEFY+ D +SKL++ P EG N KL+
Sbjct: 66 VVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVP-EGSVAANTPAVRAAKKLS 124
Query: 125 ISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLT 182
+ A A L + + H E + NA L P DV L LHTSGTT RPK VPLT
Sbjct: 125 V--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLT 182
Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSAS 242
NL S+ NI + Y+L D++ +V+PLFHVHG+ +FSA
Sbjct: 183 HKNLCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPP--KFSAH 240
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
+FW++ I+Y ATWYTAVPTIHQI+L P+P+ P++RFIRSCS+ LAP +LS+LE
Sbjct: 241 SFWKEFIQYGATWYTAVPTIHQILL--RTPPPKPL-PRIRFIRSCSSPLAPPVLSKLEAT 297
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
F APVLEAYAMTEA+H M++NPLP HKP SVG+P G E+ ILD+ G G +GE+
Sbjct: 298 FRAPVLEAYAMTEASHQMTTNPLPPL-VHKPHSVGKPFGVELKILDQKGNEMPQGKEGEI 356
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
C+RG NVTKGY NNP ANKS+F +F TGD G D DGY+ + GRIKEL+NRGGEKIS
Sbjct: 357 CVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKIS 416
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481
P E+DAVL+ HPD+++AV F VPD+KYG++I AI P G + +++ + ++ VAAFK
Sbjct: 417 PAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFK 476
Query: 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKV 518
+PK+ + T+ +PKTA+GK+QRR+V + F S AK+
Sbjct: 477 IPKKFYFTDRIPKTATGKVQRRLVCDAFFNH-SKAKL 512
|
|
| DICTYBASE|DDB_G0279561 DDB_G0279561 "AMP-dependent synthetase and ligase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 2.5e-104, Sum P(2) = 2.5e-104
Identities = 197/381 (51%), Positives = 253/381 (66%)
Query: 137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
S T+S E D + + D D ALFLHTSG+T RPKGVPLT NLA S +NI S
Sbjct: 163 SSETIS-GEDEGDKIKLETVP-DKDDKALFLHTSGSTGRPKGVPLTHENLATSSANISST 220
Query: 197 YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
+ LT SD + +V+PLFHVHG+ RFSAS FW + +++ WY
Sbjct: 221 FHLTPSDCSYVVMPLFHVHGLIGVCLSTFNAGASLVVPP--RFSASVFWSQVKQFSVNWY 278
Query: 257 TAVPTIHQIV--LDRHVAKPEPVYPK--LRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312
+AVPTIH I+ +++ K LRFIRS S+SL+P +L LE+ FG PV+E+Y
Sbjct: 279 SAVPTIHTILCNVEQSATSSASSSNKGLLRFIRSSSSSLSPTLLETLEQFFGCPVIESYG 338
Query: 313 MTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372
MTEA+H M+SNPLP+DGP KPGSVG+ +I+I+++ G Q+ G GEVCI+G NV G
Sbjct: 339 MTEASHQMASNPLPQDGPRKPGSVGKGFNVQISIVNDNGEHQKQGDVGEVCIKGKNVMHG 398
Query: 373 YKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
Y NNP+AN F GWF TGDIGY D DGYL L GR KE+INRGGEKISP+EVD LL
Sbjct: 399 YHNNPQANIDNFTKDGWFLTGDIGYLDQDGYLILKGRKKEIINRGGEKISPLEVDNALLE 458
Query: 432 HPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNE 491
+ I +AV FGVPD+KYGEEI A+IP+ +I EE+ +F +K + +FKVPK++ IT+
Sbjct: 459 NDKILEAVCFGVPDEKYGEEIWAAVIPKVPQSITVEEITQFLQKKLISFKVPKKIIITDN 518
Query: 492 LPKTASGKIQRRIVSEHFLAQ 512
PKTASGKIQRR +++ FL Q
Sbjct: 519 FPKTASGKIQRRFIADFFLKQ 539
|
|
| UNIPROTKB|G4N0E5 MGG_06199 "Peroxisomal-coenzyme A synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 227/502 (45%), Positives = 309/502 (61%)
Query: 27 GKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXX 85
G F +TY+ + V + ++L A GI G V++ N+ EF++ FLA
Sbjct: 29 GAFLTVTYAGLVAEVSKFQAKLAAIGITQGSAVSIATVNSYEFIVSFLAASWQRGIAAPL 88
Query: 86 XXXYTPDEFEFYLSDSESKLLLTP----AEGNXXXXXXXSKLNISHATATLLDAD-SELT 140
Y DEFEFY+ D +S ++L P A G+ + N + A DA +E+
Sbjct: 89 NPNYKQDEFEFYIEDVKSAIVLVPRGAFAAGSPAVKAA-KRFNAAVAEC-YWDAQKAEVA 146
Query: 141 LSLAH-SESDTNAISK-LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
L + + K L P D AL LHTSGTTSRPK VPL+ NL ++ NIK+ Y+
Sbjct: 147 LDVKDLGQLKGRGGQKVLEPQPEDTALVLHTSGTTSRPKVVPLSHRNLTRTMDNIKNTYQ 206
Query: 199 LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTA 258
LT +D T++V+PLFHVHG+ +FSAS FW+D +++ A WYTA
Sbjct: 207 LTPADRTMLVMPLFHVHGLLCGLLAPFYTGGSMVVPT--KFSASDFWRDFVQHGANWYTA 264
Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318
VPTIHQI+L ++ A P P+ PK+RFIRSCS+ L+P + S+LEE FGAPVLEAYAMTEA H
Sbjct: 265 VPTIHQILL-KNPA-PSPL-PKIRFIRSCSSPLSPTVFSQLEEKFGAPVLEAYAMTEAAH 321
Query: 319 LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
M+SNPLP KPGSVG G E+ ILD G G +GE+CIRG NVT GY NN E
Sbjct: 322 QMTSNPLPP-AKRKPGSVGIGQGVEVRILDGDGNELPRGVEGEICIRGENVTSGYLNNAE 380
Query: 379 ANKSAFLFG-WFHTGDIGYFD-SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA 436
AN SAF G +F TGD G D DGY+ + GRIKELIN+ GEKISPIE+D VL H ++
Sbjct: 381 ANASAFTKGGFFRTGDQGKIDPEDGYVTITGRIKELINKAGEKISPIELDNVLTRHEAVS 440
Query: 437 QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTA 496
+AV+F VP + YG+++ A++ + G+ + ++E+ + +A FKVP++++ T +PKTA
Sbjct: 441 EAVSFAVPSELYGQDVGVAVVLKPGAKLGKDELREWVAARLAKFKVPEKIYYTEIMPKTA 500
Query: 497 SGKIQRRIVSEHFLAQVSAAKV 518
+GKIQRRIV+E Q + AK+
Sbjct: 501 TGKIQRRIVAETMQKQDNKAKL 522
|
|
| ASPGD|ASPL0000073499 fatD [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 226/510 (44%), Positives = 293/510 (57%)
Query: 10 LNQVIDQFSSKRALSVSGK--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE 67
L Q S A+ V GK +TY+++H + +L G+ G V L N+ E
Sbjct: 4 LAQAFSPDGSNAAVIVPGKPALTVTYAQLHSHISAFQEKLAKLGVGHGAAVNLALINSYE 63
Query: 68 FVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEG---NXXXXXXXSKLN 124
F++ FLA Y DEFEFY+ D S L+L P E N K
Sbjct: 64 FIVGFLAASWQRAIAAPLNPAYKQDEFEFYIDDLSSTLVLIPRESYAQNGPAVLAGRKYQ 123
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
+ A + L + I T P D+AL LHTSGTT RPK VPLT
Sbjct: 124 AAIAECYWNGTEVVLDVKELGKLKGKGDIGVQTAQPDDIALVLHTSGTTGRPKAVPLTHK 183
Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTF 244
NL ++ NI++ YKLT D T +V+PLFHVHG+ +FSA F
Sbjct: 184 NLTTTMRNIQATYKLTPQDRTYLVMPLFHVHGLLAAFLAPLASGGSVIVPT--KFSAHQF 241
Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
W D I+Y A WY+AVPTIHQI+L + P P+ P++RFIRSCS+ L+P LE+
Sbjct: 242 WSDFIEYKANWYSAVPTIHQILLKSPL--PNPI-PQIRFIRSCSSPLSPKTFQDLEKTLN 298
Query: 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIG--VPQEGGAKGEV 362
APVLEAYAMTEA H M+SNPLP +PGSVG G EI ILD+ G VPQ G + E+
Sbjct: 299 APVLEAYAMTEAAHQMTSNPLPP-AKRQPGSVGIGQGVEIKILDQSGNEVPQ--GHEAEI 355
Query: 363 CIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
C+RG NVTKGY NNP ANKS+F G+F TGD G D DGY+ + GRIKELIN+GGEKIS
Sbjct: 356 CVRGENVTKGYLNNPAANKSSFTKDGFFRTGDQGKKDPDGYVIITGRIKELINKGGEKIS 415
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDD-KYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
PIE+D LL +P++ +AV F +PD YGE+I A++ + G N E+E+ + ++ +A F
Sbjct: 416 PIELDNTLLQNPNVGEAVCFAIPDPGHYGEDIGAAVVLKSGQNATEDELKSWVQEKLAKF 475
Query: 481 KVPKRVFITNELPKTASGKIQRRIVSEHFL 510
K PK+ ++PKTA+GKIQRR V+E L
Sbjct: 476 KTPKQ-----QIPKTATGKIQRRKVAEAML 500
|
|
| SGD|S000000426 PCS60 "Peroxisomal protein that binds AMP and mRNA" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 185/351 (52%), Positives = 237/351 (67%)
Query: 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXX 220
SDVAL LHTSGTTS PK VPL N+ S NI + YKLT D + +V+PLFHVHG+
Sbjct: 189 SDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIGV 248
Query: 221 XXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
F FW +KYN W++ VPTI I+L+ + KP P +P
Sbjct: 249 LLSTFRTQGSVVVPDG--FHPKLFWDQFVKYNCNWFSCVPTISMIMLN--MPKPNP-FPH 303
Query: 281 LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
+RFIRSCS++LAP +LE+ F APVLEAYAMTEA+H M+SN LP G KPG+VG+P
Sbjct: 304 IRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPP-GKRKPGTVGQPQ 362
Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--GWFHTGDIGYFD 398
G + ILD+ G GEV IRG NVT GY NNP+ANK F +F TGD GYFD
Sbjct: 363 GVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFD 422
Query: 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP 458
+G+L L GRIKELINRGGEKISPIE+D ++LSHP I +AVAFGVPDD YG+ + AI+
Sbjct: 423 PEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVL 482
Query: 459 REGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
++G + EE++ F KK++A+FK+P +V+ ++LPKTA+GKIQRR+++E F
Sbjct: 483 KKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETF 533
|
|
| TIGR_CMR|BA_4763 BA_4763 "long-chain-fatty-acid--CoA ligase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 130/379 (34%), Positives = 199/379 (52%)
Query: 135 ADSELTLSLAHS-ESDTNAISKLTNDP-SDVALFLHTSGTTSRPKGVPLTQNNLAAS-VS 191
++SE T+ L +S E + N ++ DP +D+AL +T GTT PKGV LT NL ++ +
Sbjct: 179 SESE-TIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237
Query: 192 NIKSVYKLTESDSTVI-VLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIK 250
++ +Y E + V+ VLP FHV+GM +F ++ + K
Sbjct: 238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP--KFDMKMVFEAIKK 295
Query: 251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA 310
+ T + PTI+ +L+ + K + +R S SA L + + E G ++E
Sbjct: 296 HKVTLFPGAPTIYIALLNSPLLKEYDI-SSIRACISGSAPLPVEVQEKFETVTGGKLVEG 354
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPN 368
Y +TE++ + SN L E PGS+G P E I+ E G G GE+ ++GP
Sbjct: 355 YGLTESSPVTHSNFLWEK--RVPGSIGVPWPDTEAMIMSLETGEALRPGEIGEIVVKGPQ 412
Query: 369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAV 428
+ KGY N PE + GW HTGD+GY D DG+ ++ R K++I G + P EV+ V
Sbjct: 413 IMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEV 472
Query: 429 LLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFI 488
L H + + V GVPD GE + ++ +EG+ EEE+ +F +K +AA+KVPK
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEF 532
Query: 489 TNELPKTASGKIQRRIVSE 507
+ELPKT GKI RR++ E
Sbjct: 533 RDELPKTTVGKILRRVLIE 551
|
|
| TIGR_CMR|CHY_0437 CHY_0437 "long-chain-fatty-acid--CoA ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 125/365 (34%), Positives = 188/365 (51%)
Query: 147 ESDTNAISKLTNDPS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
+S ++K+T +P D+A+ +T GTT KGV LT NL A+ + + + S
Sbjct: 193 KSPPQPLAKITINPEEDLAVLQYTGGTTGISKGVMLTHRNLIANAMQVNAWDPVRSSQDI 252
Query: 206 VI-VLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
++ V+P FHV+G+ RF+ + ++KY T + PTI+
Sbjct: 253 ILAVMPFFHVYGLSVALNLAVLTGATLLIMP--RFNVDEMLKTIVKYRPTLFPGAPTIYV 310
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
+++ K + +R S SA L + + EE G ++E Y +TE++ + NP
Sbjct: 311 AIINHPRIKDYDI-TSIRLCISGSAPLPVEVKKKFEEITGGRIVEGYGLTESSPVTHCNP 369
Query: 325 LPEDGPHKPGSVGRPVGQEIAILDEIGV--PQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
+ KPGSVG P+ + ++ E P G GEV ++GP V KGY N PE
Sbjct: 370 V--HSLEKPGSVGLPLSDTLCMVVEPDTLNPVAIGEVGEVAVKGPQVMKGYWNRPEETAL 427
Query: 383 AFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFG 442
GW TGD+G D DGYL++V R K+LI GG I P EV+ VL HP + +AV G
Sbjct: 428 VLKEGWLLTGDLGRMDEDGYLYIVDRKKDLIISGGYNIYPREVEEVLYEHPKVKEAVVIG 487
Query: 443 VPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
VPD+ GE + I+ +E EE+++ C++ +A +KVPK V ELPKT GK+ R
Sbjct: 488 VPDEYRGEVVKAFIVLKENETATSEEIIKHCQEKLAKYKVPKYVEFRTELPKTTVGKVLR 547
Query: 503 RIVSE 507
R + E
Sbjct: 548 RALRE 552
|
|
| TIGR_CMR|CHY_1731 CHY_1731 "long-chain-fatty-acid--CoA ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 170/523 (32%), Positives = 256/523 (48%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL L + +++ A G+ ++TY + E ++R + L GI GD VA+ PN
Sbjct: 28 TLHELFWETTEKYPGLIATVFLGQ-EMTYKELGEKIKRFTNALSKLGIKKGDRVAVMLPN 86
Query: 65 TVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDS--ESKLLLTPAEGNXXXXXXXSK 122
EFVI + A++ Y E E+ L+DS E+ +LL +
Sbjct: 87 CPEFVISYFAILTLGGIVVQTNPMYVERELEYQLNDSGAETIILLDVLYPRANAVKGNTA 146
Query: 123 L-NISHATATLLDA-DSELTLSLAH-----SESDTNAISKLTNDPSDVALFLHTSGTTSR 175
L N+ L+ E + S+S+ N ++T P DVA+ +T GTT
Sbjct: 147 LKNLIVVNIPLIGTYPGEFGPGVYKFNDLISDSEPNP-PEVTVTPDDVAVLQYTGGTTGI 205
Query: 176 PKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXX 232
KG LT NL A+V ++ + + LPLFHV+GM
Sbjct: 206 SKGAMLTHKNLVANVYQVREFSNGIFFDGQERILTALPLFHVYGMTCCMNLATCFGGTMI 265
Query: 233 XXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292
+F A+ Q + +Y T + PT++ +L+ H P+ LR I C + A
Sbjct: 266 LIP--KFDATLLLQHIQRYRPTSFPGAPTMYVALLN-H---PDLTKYDLRSINVCVSGSA 319
Query: 293 PV---ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-ILD 348
P+ + ++ EE GA V+E Y ++EA+ + NP+ G K GS+G P IA I+D
Sbjct: 320 PLPVEVQTKFEEVTGAVVVEGYGLSEASPVTHCNPIR--GTRKIGSIGVPYSDTIAKIVD 377
Query: 349 -EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407
E G G GE+ ++GP V KGY N PE +A GW +TGD+ D DG+ ++V
Sbjct: 378 IETGEELPPGQIGELVVKGPQVMKGYWNRPEETANALKDGWLYTGDLAKMDEDGFFYIVD 437
Query: 408 RIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE 467
R K++I GG I P EV+ VL HP + +A+ GVPD GE + I+ +EG + E+
Sbjct: 438 RKKDMIIAGGYNIYPREVEEVLYQHPKVKEAIVVGVPDPYRGETVKAFIVVKEGETLTEQ 497
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510
EV+ FC ++A +KVP+ V +ELPKTA GK+ RR + E L
Sbjct: 498 EVIEFCNAHLARYKVPRLVEFRSELPKTAVGKVLRRQLREEEL 540
|
|
| TIGR_CMR|BA_1091 BA_1091 "long-chain-fatty-acid--CoA ligase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 153/487 (31%), Positives = 240/487 (49%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +++++V R +S L GI GD VAL N+ F++ ++ YT
Sbjct: 27 VSYDQLNKMVTRFSSNLAEMGIGKGDNVALVVGNSPHFLVGLYGTMKAGATVIPVNPIYT 86
Query: 91 PDEFEFYLSDSESK------LLLTPAEGNXXXXXXXSKLNISHATATLLDADSEL--TLS 142
DE + L + + K +LL + + I ++ ++E T +
Sbjct: 87 ADEMHYILQNGDVKTIIVLDVLLPVIQSLTTRLPSLENIIICETSSDFNHTETEKMKTFT 146
Query: 143 LAHSESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
D T +L D DVA+ L+TSGTT +PKG LT NL ++ S++ S + T
Sbjct: 147 RMIGAGDLTYEGPEL--DEEDVAVILYTSGTTGKPKGAMLTHKNLYSNASDVASYLQYTA 204
Query: 202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
D V LP+FHV + +FS ++ Y T + VPT
Sbjct: 205 DDRVVAALPMFHVFCLTVAVNAPIVNGATILMLP--KFSPKEVFRICRTYEPTIFAGVPT 262
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
++ + A E V LR S AS+ +L E+ F V E Y ++EA+ +
Sbjct: 263 MYNYLYLFEEASAEDV-KTLRLCISGGASMPVALLQNFEKRFDVIVSEGYGLSEASPVTC 321
Query: 322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
NPL D P KPGS+G + E I++E+G GA GE+ +RGPNV KGY N PE
Sbjct: 322 FNPL--DRPRKPGSIGTNIWHVENKIVNELGEEVPVGAVGELIVRGPNVMKGYYNAPEDT 379
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
+ GW +TGD+ D +GY ++V R K+++ GG + P EV+ VL H +A+ V
Sbjct: 380 AATLKDGWLYTGDLAKMDEEGYFYIVDRKKDIVLVGGYNVYPREVEEVLYMHESVAEVVV 439
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
GVPD+ GE + ++ ++ +N+ EEE++ +C ++A +KVPK + ELPK +GK+
Sbjct: 440 IGVPDENLGEAVRAYVVLKQ-TNVTEEELMHYCTLHLAKYKVPKSIEFLTELPKNTTGKL 498
Query: 501 QRRIVSE 507
RR + E
Sbjct: 499 LRRALRE 505
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A7ZVY7 | CAIC_ECOHS | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| B7L4G0 | CAIC_ECO55 | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| Q57TJ0 | CAIC_SALCH | 6, ., 2, ., 1, ., - | 0.3231 | 0.8814 | 0.8916 | yes | no |
| Q9SMT7 | 4CLLA_ARATH | 6, ., 2, ., 1, ., - | 0.8070 | 0.9789 | 0.9961 | yes | no |
| B5R1R0 | CAIC_SALEP | 6, ., 2, ., 1, ., - | 0.3230 | 0.8871 | 0.8974 | yes | no |
| Q5PIL0 | CAIC_SALPA | 6, ., 2, ., 1, ., - | 0.3312 | 0.8814 | 0.8916 | yes | no |
| A7ZHC8 | CAIC_ECO24 | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| Q0K844 | SAUT_CUPNH | 6, ., 2, ., 1, ., - | 0.3606 | 0.8585 | 0.8821 | yes | no |
| B5YYD1 | CAIC_ECO5E | 6, ., 2, ., 1, ., - | 0.3122 | 0.9330 | 0.9439 | yes | no |
| B5FHG5 | CAIC_SALDC | 6, ., 2, ., 1, ., - | 0.3271 | 0.8814 | 0.8916 | yes | no |
| B7M0D4 | CAIC_ECO8A | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| Q8ZRX4 | CAIC_SALTY | 6, ., 2, ., 1, ., - | 0.3271 | 0.8871 | 0.8974 | yes | no |
| B7LWM8 | CAIC_ESCF3 | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| B1IRD9 | CAIC_ECOLC | 6, ., 2, ., 1, ., - | 0.3193 | 0.9311 | 0.9419 | yes | no |
| Q83MG9 | CAIC_SHIFL | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| C0Q4L3 | CAIC_SALPC | 6, ., 2, ., 1, ., - | 0.3231 | 0.8814 | 0.8916 | yes | no |
| B7MNP4 | CAIC_ECO81 | 6, ., 2, ., 1, ., - | 0.3180 | 0.9330 | 0.9439 | yes | no |
| B7UI83 | CAIC_ECO27 | 6, ., 2, ., 1, ., - | 0.3075 | 0.9426 | 0.9535 | yes | no |
| B4T6J6 | CAIC_SALNS | 6, ., 2, ., 1, ., - | 0.3292 | 0.8814 | 0.8916 | yes | no |
| B6HYY8 | CAIC_ECOSE | 6, ., 2, ., 1, ., - | 0.3135 | 0.9311 | 0.9419 | yes | no |
| B4EY25 | CAIC_PROMH | 6, ., 2, ., 1, ., - | 0.3146 | 0.9311 | 0.9401 | yes | no |
| P38137 | FAT2_YEAST | 6, ., -, ., -, ., - | 0.4625 | 0.8508 | 0.8195 | yes | no |
| Q8FLA5 | CAIC_ECOL6 | 6, ., 2, ., 1, ., - | 0.3133 | 0.9426 | 0.9535 | yes | no |
| B4TWR4 | CAIC_SALSV | 6, ., 2, ., 1, ., - | 0.3292 | 0.8814 | 0.8916 | yes | no |
| B5BL55 | CAIC_SALPK | 6, ., 2, ., 1, ., - | 0.3312 | 0.8814 | 0.8916 | yes | no |
| B5F750 | CAIC_SALA4 | 6, ., 2, ., 1, ., - | 0.3223 | 0.8910 | 0.9013 | yes | no |
| B4TIH0 | CAIC_SALHS | 6, ., 2, ., 1, ., - | 0.3271 | 0.8871 | 0.8974 | yes | no |
| Q3Z5X2 | CAIC_SHISS | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
| A8ALR6 | CAIC_CITK8 | 6, ., 2, ., 1, ., - | 0.3209 | 0.8871 | 0.8974 | yes | no |
| O74976 | FAT2_SCHPO | 6, ., -, ., -, ., - | 0.4902 | 0.9502 | 0.9707 | yes | no |
| O07610 | LCFB_BACSU | 6, ., 2, ., 1, ., 3 | 0.3084 | 0.9330 | 0.9512 | yes | no |
| A9MYJ6 | CAIC_SALPB | 6, ., 2, ., 1, ., - | 0.3244 | 0.8852 | 0.8955 | yes | no |
| B1LFX0 | CAIC_ECOSM | 6, ., 2, ., 1, ., - | 0.3153 | 0.9369 | 0.9477 | yes | no |
| B7N7R2 | CAIC_ECOLU | 6, ., 2, ., 1, ., - | 0.3160 | 0.9330 | 0.9439 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00009148001 | SubName- Full=Chromosome undetermined scaffold_222, whole genome shotgun sequence; (523 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 523 | |||
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 0.0 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-153 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-142 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-133 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-123 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-120 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-118 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-117 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-117 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-116 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-113 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-111 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-105 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-105 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-102 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-98 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-95 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-95 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 3e-94 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-91 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-90 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-90 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-88 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 7e-88 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-85 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-85 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-82 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 5e-81 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-80 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-78 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-78 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 6e-78 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 8e-78 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-77 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-77 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-77 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-76 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 6e-76 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-75 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-75 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-75 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 6e-73 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-71 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 5e-70 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-69 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-69 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-69 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-69 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-66 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-66 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-66 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-66 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 2e-66 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-66 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 5e-65 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 3e-64 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-63 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-63 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 8e-62 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 8e-62 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 8e-61 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-61 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 9e-61 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-60 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-60 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-59 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 4e-59 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-58 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 3e-58 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-57 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-56 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 8e-56 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-55 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-55 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-55 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 7e-55 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 8e-55 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-53 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-53 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-52 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-52 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 6e-51 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 8e-51 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-50 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-50 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-50 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-49 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 3e-49 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-48 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-48 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 6e-48 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 6e-48 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 7e-48 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-47 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-47 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 6e-47 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-46 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-45 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 7e-45 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 7e-45 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-44 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-44 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 3e-44 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-42 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-41 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 6e-41 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 7e-41 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 2e-40 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 6e-40 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-39 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-39 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 3e-39 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 1e-37 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-37 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-37 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-36 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 1e-35 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 1e-34 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 2e-33 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 4e-33 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-32 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 1e-32 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-32 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-32 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 7e-32 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-31 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 5e-31 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-30 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 5e-30 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 9e-30 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-29 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-28 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-28 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-28 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 8e-28 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 2e-27 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 4e-27 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 4e-27 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 4e-27 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-26 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 4e-26 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 8e-26 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-25 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 3e-25 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 7e-25 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 8e-24 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-23 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-23 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-23 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-22 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 1e-22 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 6e-22 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 7e-21 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-20 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 2e-20 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-20 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-19 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-18 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 3e-18 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 9e-17 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-16 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 6e-16 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-15 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 6e-15 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 4e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 9e-12 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 6e-11 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 7e-10 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 8e-09 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 6e-08 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-07 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 3e-07 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 5e-06 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-05 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 8e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 9e-05 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 3e-04 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 4e-04 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 6e-04 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 8e-04 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.001 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 0.001 | |
| PRK07868 | 994 | PRK07868, PRK07868, acyl-CoA synthetase; Validated | 0.001 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 572 bits (1476), Expect = 0.0
Identities = 208/348 (59%), Positives = 249/348 (71%), Gaps = 3/348 (0%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
P D AL LHTSGTT RPKGVPLT NL AS NI +KLT SD + V+PLFH+HG++
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
LL++ AG +V P +FSAS FW D+ KY TWY+AVPTIHQI+L P P
Sbjct: 61 SLLATLLAGGSVVCPP--KFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP 118
Query: 280 KLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP 339
+LRFIRS SA L P +L RLE+ FG PVLEAY MTEA H ++SNPLP KPGSVGRP
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP-LVRKPGSVGRP 177
Query: 340 VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399
G E+AILD+ G P G +GE+ IRGPNVT GY NNPEAN+ AF GWF TGD+GY D
Sbjct: 178 AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDE 237
Query: 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR 459
DGYL L GRIKELINRGGEKISP EV+ VLL HP +A+AV FGVPD+ YGEE+ A++ R
Sbjct: 238 DGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLR 297
Query: 460 EGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
S + EE+ F +K +AAFKVPK++ + LPK A+GKIQRR ++E
Sbjct: 298 ADSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 448 bits (1153), Expect = e-153
Identities = 205/517 (39%), Positives = 285/517 (55%), Gaps = 11/517 (2%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
TL LL + + + AL G+ LTY + R A+ L A G+ GD VA+ P
Sbjct: 12 TLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLP 71
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE--GNAAAQAAAS 121
N+ EF+I FLA +RA A A PLN TP E + L+D+ +K+L+T AE A A A
Sbjct: 72 NSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL 131
Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
+ + D +TL +E DP D+A L+TSGTT PKGV L
Sbjct: 132 PVVLVVLLVGDADDRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVL 191
Query: 182 TQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239
T NL A+ + I + LT D + LPLFH+ G++ GLL+ G + L + F
Sbjct: 192 THRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPF 251
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
+ KY T + VPT + +LD + + LR + S A L P +L R
Sbjct: 252 DPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERF 311
Query: 300 EEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG 357
EE FG +LE Y +TE + +++ NP P+D KPGSVGRP+ G E+ I+D G G
Sbjct: 312 EERFGPIAILEGYGLTETSPVVTINP-PDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPG 370
Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
GE+ +RGPNV KGY N PEA AF GW TGD+GY D DGYL++VGR+K+LI G
Sbjct: 371 EVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG 430
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN--IDEEEVLRFCK 474
GE I P E++AVL HP +A+A GVPD+++GE + ++ + G + + EE+ F +
Sbjct: 431 GENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLR 490
Query: 475 KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511
K +A +KVP+ V +ELP+TASGKI RR + E + A
Sbjct: 491 KRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527
|
Length = 534 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 417 bits (1074), Expect = e-142
Identities = 182/502 (36%), Positives = 262/502 (52%), Gaps = 41/502 (8%)
Query: 6 LIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
L LL + +F + AL+ G+ LTY+ + EL +R A+ L G+ GD VAL PN
Sbjct: 1 LADLLERAARRFPDRPALTFFGR-KLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59
Query: 66 VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI 125
+F I + +++A A P+N YTP E E L+DS +K+L+ I
Sbjct: 60 PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA---------------I 104
Query: 126 SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN 185
S A A L + L P D+A+ +T GTT PKG LT N
Sbjct: 105 SFEDALASGAPLPLPVEL---------------SPDDLAVLQYTGGTTGVPKGAMLTHRN 149
Query: 186 LAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-PAAGRFSAS 242
L A+V I + K D + LPLFH+ G+ +L GA L P F
Sbjct: 150 LVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVP---NFRPI 206
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
+++ +Y T + VPT++ +L H + + LR S A L + R EE
Sbjct: 207 NVLKEIKRYRFTIFPGVPTLYNALL-NHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEK 265
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGE 361
GAP++E Y +TE + + + NPL DG KPGS+G P+ G E+ I+D+ G G GE
Sbjct: 266 TGAPLVEGYGLTETSPVTTVNPL--DGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVGE 323
Query: 362 VCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
+ +RGP V KGY N PE GW TGDIGY D DGY ++V R K++I GG +
Sbjct: 324 LVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVY 383
Query: 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481
P E++ VL SHP + +A GVPD GE + ++ +EG+++ EEE++ FC++ +AA+K
Sbjct: 384 PREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYK 443
Query: 482 VPKRVFITNELPKTASGKIQRR 503
VP++V +ELPK+A GKI RR
Sbjct: 444 VPRQVEFRDELPKSAVGKILRR 465
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 395 bits (1017), Expect = e-133
Identities = 198/489 (40%), Positives = 274/489 (56%), Gaps = 12/489 (2%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y + LV+ A +L +G+ GD VAL + EFV+ LA RA PL+ A
Sbjct: 44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALP 103
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E + ++++L A+G ++ S TLS+
Sbjct: 104 IAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV--HLDAA 161
Query: 151 NAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
+ T+ P D A+ + T GTT PK VP T N+A+SV I + Y+L+ D+TV
Sbjct: 162 TEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATV 221
Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
V+PL+H HG++A LL++ A+G AV LPA GRFSA TFW D+ ATWYTAVPTIHQI+
Sbjct: 222 AVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQIL 281
Query: 267 LDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
L+R +P LRFIRSCSA L L+ F APV+ A+ MTEATH +++ +
Sbjct: 282 LERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI 341
Query: 326 P-----EDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
E+ G VGR G +I I+ G+P GA GEV +RG V +GY +P
Sbjct: 342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTIT 401
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
+ F GW TGD+G + G L + GRIKELINRGGEKISP V+ VL SHP++ +A
Sbjct: 402 AANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAV 461
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
FGVPD YGE + I+PRE + EE+++FC++ +AAF++P + LP TA G +
Sbjct: 462 FGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSL 521
Query: 501 QRRIVSEHF 509
RR V+E F
Sbjct: 522 DRRAVAEQF 530
|
Length = 534 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-123
Identities = 141/347 (40%), Positives = 204/347 (58%), Gaps = 6/347 (1%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
P D AL +TSGTT RPKG LT N+ + +I LTE D T++ +PLFHV G++
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
G+L+S AGA + L +F + + + T VPT+ +L+ H +
Sbjct: 61 GVLASLTAGATLVLME--KFDPGAALRLIERERITALHGVPTMFIALLE-HPDFDKFDLS 117
Query: 280 KLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGR 338
LR S A + P ++ R+ E F A + Y MTE + + + + +PG+VGR
Sbjct: 118 SLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGR 177
Query: 339 PV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGY 396
P+ G E+ I+D G G GE+C+RG +V KGY N+PEA A GW HTGD+GY
Sbjct: 178 PLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGY 237
Query: 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAI 456
D DGYL +VGRIK++I RGGE I P E++ LL+HP +A+A GVPD++ GE + +
Sbjct: 238 MDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFV 297
Query: 457 IPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + G+ + EEE++ FC+ +A FKVP+ V +ELP+TASGKIQ+
Sbjct: 298 VLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKF 344
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-120
Identities = 164/491 (33%), Positives = 256/491 (52%), Gaps = 15/491 (3%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY+ + E V R A+ L A G+ GD VA+ N+ E++ + AV + A P+N P
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
+E + L+D+E +++L +E A +L D + +
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELL 152
Query: 152 AISKLTN-----DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
A + T D +D A L+TSGTT PKGV L+ NL + + KL+ D +
Sbjct: 153 AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYL 212
Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
+++P+FHVH L+ AGA +P RF + T++ AVPTI Q++
Sbjct: 213 VIVPMFHVHAWGLPYLA-LMAGAKQVIP--RRFDPENLLDLIETERVTFFFAVPTIWQML 269
Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
L + + LR + A+L P +L +E FG +++ Y MTE + ++S P
Sbjct: 270 L-KAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPE 328
Query: 327 EDGP---HKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
+ P K S GRP+ G E I+D+ G +P +GG GE+ +RGP + +GY N PEA
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEAT 388
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
GW HTGD+GY D DGYL++ RIK++I GGE I P E++ L HP +A+
Sbjct: 389 AETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAV 448
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
GVPD+K+GE ++ + G+ +D +E+ F + +A FK+PKR+ +ELP+T+ GKI
Sbjct: 449 IGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKI 508
Query: 501 QRRIVSEHFLA 511
+R++ E +
Sbjct: 509 LKRVLREQYAE 519
|
Length = 521 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 354 bits (910), Expect = e-118
Identities = 156/478 (32%), Positives = 220/478 (46%), Gaps = 66/478 (13%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
TY+ + E V R A+ L+A G+ GD VAL N EF+ + A+ + A A P+N A
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
+E L S ++L++ D
Sbjct: 63 RGEELAHILDHSGARLIVV----------------------------------------D 82
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
T AI L+TSGTT PKGV LT L + + L D + L
Sbjct: 83 TAAI-------------LYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPL 129
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
PLFH++ + ++ GA + L RFSAS FW + K+ AT + + + I L +
Sbjct: 130 PLFHINAQAYSVYAALLVGATLVL--LPRFSASRFWDQVRKHGATVFNLLGAMAAI-LMK 186
Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
P+ LRF+ A L I EE FG ++E Y MTE + +
Sbjct: 187 QPPSPDDRDHPLRFV--FGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPI----IAPGD 240
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFL 385
P PGS GRP G E+ I+DE G G GE+ +R KGY PEA A+
Sbjct: 241 PAPPGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWR 300
Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
GWFHTGD G D DG+L+ V R K+ I R GE IS EV+A +L+HP +A+A VP
Sbjct: 301 NGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPS 360
Query: 446 DKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ +E+ ++ R G +D E +L FC+ + F VP+ + +ELPKT + KIQ+
Sbjct: 361 ELGEDEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKA 418
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-117
Identities = 146/417 (35%), Positives = 214/417 (51%), Gaps = 13/417 (3%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY + E R A+ L A G+ GD VA+ PN+ E+V+ LAV++A A PL+ +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---DSELTLSLAHSES 148
+ + L DSE+K+L+T E KL + A + D L L S
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120
Query: 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV 208
+ DP D+A ++TSGTT +PKGV LT NL A + + + LT D V++
Sbjct: 121 AEPPAPPV--DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGD-RVLL 177
Query: 209 LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
L H G + + AG + L + + KY T VPT+ +++L
Sbjct: 178 LLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLK 237
Query: 269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPE 327
+ + LR + S L P +L RL E FG P++ Y TE T ++++ LP
Sbjct: 238 -APEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETT-VVATANLPG 295
Query: 328 DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL- 385
D KPGS+GRP+ G E+ +LDE G P G GE+CIRGP V +GY N+PE F+
Sbjct: 296 DPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355
Query: 386 --FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
+G + TGD+G +D DGYL ++GR + + GE+I P E++AVLL HP +A+A
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 348 bits (895), Expect = e-117
Identities = 144/342 (42%), Positives = 200/342 (58%), Gaps = 6/342 (1%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL 221
D A L+TSGTT +PKGV L+ NL A+ + LTE D + VLPLFHV G +GL
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
L + AG V L F +F + + +Y T VPT++ L + L
Sbjct: 61 LGALLAGGTVVLYEGFPF-PLSFLELIEQYRVTVLFGVPTLYDA-LAKAAEDRGYDLSSL 118
Query: 282 RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
R + S L+P +L R EE GAP+LE Y +TE + +++S P+ KPG+VGRPV
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETS-VVTSTN-PDSELKKPGTVGRPVP 176
Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDS 399
G E+ ++DE G P G GE+ +RGP V KGY NNP +A GW+ TGD+GY D
Sbjct: 177 GVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236
Query: 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR 459
+GYL++ GR K+LI GGE + P EV++VLL HP +A+A GVPD+ GE I ++ R
Sbjct: 237 EGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLR 296
Query: 460 EGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQ 501
G++ EE+ ++ +A +KVP+ + +ELPKTASGKI
Sbjct: 297 PGADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-116
Identities = 171/517 (33%), Positives = 262/517 (50%), Gaps = 22/517 (4%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL LL + +F K A V G LTY+ ++ V RAA+ L A GI GD VA+ PN
Sbjct: 6 TLPELLARAARRFGDKEAY-VFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPN 64
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-----PAEGNAAAQAA 119
+ +VI L ++A A PLN YT DE + L+ ++K L + +A +
Sbjct: 65 SPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP 124
Query: 120 ASKLNISHATATLLDADSELT-----LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
A + + T ++ L+ + DP DVA L TSGTT
Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEV-----DPDDVADILFTSGTTG 179
Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
RPKG LT L ++ ++ LTE D + P FHV G AG+ + GA + LP
Sbjct: 180 RPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATI-LP 238
Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294
F ++ + T PT++ +L H + LR + +AS+
Sbjct: 239 LP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQ-HPDRSAEDLSSLRLAVTGAASMPVA 296
Query: 295 ILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGV 352
+L R E G VL Y ++EA+ + + N L +D G++G G E I++E+G
Sbjct: 297 LLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGE 356
Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKE 411
G GE+ +RGPNV KGY ++PEA +A GW HTGD+G D +GYL++V R K+
Sbjct: 357 EVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKD 416
Query: 412 LINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471
+ GG + P EV+ VL HP +A+A GVPD++ GE ++ + G+ + EEE++
Sbjct: 417 MFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIA 476
Query: 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508
+C++++A +KVP+ + +ELPK A+GK+ +R + E
Sbjct: 477 YCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-113
Identities = 167/478 (34%), Positives = 235/478 (49%), Gaps = 65/478 (13%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY + R A L+A G+ GD VA+ P + E+V+++LA+ RA A PLN +Y
Sbjct: 12 LTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYP 71
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E + LS D+ L +
Sbjct: 72 AAELAYILS----------------------------------DSQPSLLV--------- 88
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
D AL ++TSGTT RPKGV LT NLAA+ + ++ T SD + LP
Sbjct: 89 -----------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALP 137
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
L HVHG+ L AGA+V RF + T + VPTI+ +L+ +
Sbjct: 138 LHHVHGLFNALHCPLWAGASVEF--LPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHY 195
Query: 271 VAKPEPVY--PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED 328
LR S SA+L +L R EE G +LE Y MTE T + SNPL D
Sbjct: 196 EFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTLLERYGMTE-TGMALSNPL--D 252
Query: 329 GPHKPGSVGRPV-GQEIAILDEIGVPQ-EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF 386
G +PG+VG P+ G E+ I+DE G G GE+ +RGPNV Y N PEA AF
Sbjct: 253 GERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTE 312
Query: 387 -GWFHTGDIGYFDSDGYLHLVGRIKEL-INRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
GWF TGD+G D DGY ++GR + I GG K+S +E++ LL HP +A+ GVP
Sbjct: 313 DGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVP 372
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
D +GE + ++P G+ + E+ + ++ +A +K+PKRV + +ELP+ A GK+Q+
Sbjct: 373 DPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 333 bits (857), Expect = e-111
Identities = 143/347 (41%), Positives = 193/347 (55%), Gaps = 12/347 (3%)
Query: 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG 220
D AL L+TSGTT RPKGV LT NL A+ N + L+ D ++ PL+H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA-AGGLF 59
Query: 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
LL + AAG V L +F + ++ T VPT+ Q +L R
Sbjct: 60 LLPALAAGGTVVLMP--KFDPEAVLDLIERHRVTHTFLVPTMFQRLL-RLPDFARYDLSS 116
Query: 281 LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA---THLMSSNPLPEDGPHKPGSVG 337
LR I +A + + + E FG ++ Y MTE T L+S PED K GSVG
Sbjct: 117 LRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLS----PEDWLRKLGSVG 172
Query: 338 RPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396
RPV G E+ I+DE G G GE+ +RGP V GY N PEA A GW HTGD+GY
Sbjct: 173 RPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGY 232
Query: 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAI 456
D DGYL++V R K++I GGE I P EV+ VLL+HP +A GVPD+++GE + +
Sbjct: 233 LDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVV 292
Query: 457 IPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ R G+ +D EE++ FC++ +A +KVPK V +ELP+ ASGKI +R
Sbjct: 293 VLRPGATLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKR 339
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-105
Identities = 166/488 (34%), Positives = 239/488 (48%), Gaps = 28/488 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LT++ + + R A L G+ GDVVAL PN++EF +FL + A + N +YT
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-----ELTLSLAH 145
PDE L S+ KL+ + + AA +L L A E L
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL---TES 202
D + L + D A L++SGTT PKGV L+ N+ A++S ++ K + +
Sbjct: 131 GAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSN 190
Query: 203 DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI 262
D + LP +H +G+ L S + +P +F + TF + + KY T VP I
Sbjct: 191 DVVLTFLPFYHAYGLTTTLASLLCGATVIIMP---KFDSETFLKLIEKYKVTSLFLVPPI 247
Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-----GAPVLEAYAMTEAT 317
+ L + + LR I S +A L L+E + + Y MTE
Sbjct: 248 -AVALAKSPLVDKYDLSSLRVIFSGAAPL----SKELQEELRKRFPNTTIKQGYGMTETG 302
Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG-GAKGEVCIRGPNVTKGYKN 375
++ P D KPGSVGR V E I+DE G G +GE+C++GP + KGY N
Sbjct: 303 -PATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLN 359
Query: 376 NPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
NPEA K GW HTGDIGYFD DG ++V R KELI G ++ P E++AVLL HP
Sbjct: 360 NPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPK 419
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK-VPKRVFITNELP 493
+A A G+PD+ GE ++ + GS + E+EV + K VA +K + V +E+P
Sbjct: 420 VADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIP 479
Query: 494 KTASGKIQ 501
K+ SGKI
Sbjct: 480 KSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-105
Identities = 187/511 (36%), Positives = 260/511 (50%), Gaps = 40/511 (7%)
Query: 12 QVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
+F + AL + +G+ LTY+ + LV R A+ L A G GDVV L PN++EF
Sbjct: 13 LFASEFGDRPALIDAATGR-ALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFP 71
Query: 70 IMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT 129
++FLAV+ A A N YTP E + DS +KL +T +E + A +
Sbjct: 72 VVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALE------- 124
Query: 130 ATLLDADSELTLSLAHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNL 186
++ DS S A + + DVA ++SGTT R KGV LT NL
Sbjct: 125 -PVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNL 183
Query: 187 AASVSNIKSVYKLTESDSTVI--VLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSAST 243
A+V+ + + V VLP+FH++G+ LL+ GA V +P RF
Sbjct: 184 IANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMP---RFDLEK 240
Query: 244 FWQDMIKYNATWYTAVPTI------HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
F + KY T VP I H IV + L+ I S +A L +
Sbjct: 241 FLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDL-------SSLKQIGSGAAPLGKELAE 293
Query: 298 RLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQ 354
F G + + Y MTE++ + + P+PE P KPGSVGR V E I+D E G
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEKDP-KPGSVGRLVPNVEAKIVDPETGESL 352
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
GE+ +RGP V KGY NNPEA GW HTGD+GYFD DGYL +V R+KELI
Sbjct: 353 PPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELI 412
Query: 414 NRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR-EGSNIDEEEVLRF 472
G +++P E++A+LLSHP+IA A PD++ G EI A + R GS + E+EV++F
Sbjct: 413 KYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAG-EIPMAFVVRQPGSELSEDEVMQF 471
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
K VA +K ++V + +PK+ SGKI RR
Sbjct: 472 VAKQVAPYKKVRKVVFVDAIPKSPSGKILRR 502
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-102
Identities = 148/479 (30%), Positives = 225/479 (46%), Gaps = 53/479 (11%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY + + +R A+ L G+ GDVVA PN EFV+++LA R A P+ Y
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 91 PDEFEFYLSDSESKLLLTPAEG---NAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
E F L + +++L P E + AA
Sbjct: 62 ERELGFILRQARARVLFVPDEFRGFDYAAM------------------------------ 91
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
P DVAL L+TSGTT PKGV T N L A V + LT D ++
Sbjct: 92 ------------PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLM 139
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPT-IHQIV 266
PL H+ G L GL GA V L R+ + + + ++ T+ + ++
Sbjct: 140 PSPLAHITGFLYGLELPLLLGATVVL--QDRWDPARALELIREHGVTFTMGATPFLADLL 197
Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
P P LR A + + R EA GA V+ AY MTE L++
Sbjct: 198 --AAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTE-VPLVTVGTPD 254
Query: 327 EDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
+ + + GRPV G E+ I+D+ G G +GE+ +RGP + GY + P+ ++
Sbjct: 255 DPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFTD 314
Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
GWF TGD+G D+DGYL + GR K++I RGGE IS E++ +LL HP +A+ +PD
Sbjct: 315 DGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPD 374
Query: 446 DKYGEEINCAIIPREGSNIDEEEVLRFCK-KNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ GE + ++P G+++ E+ + +A K P+R+ + + LP+T SGK+Q+
Sbjct: 375 ERLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKF 433
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 2e-98
Identities = 150/484 (30%), Positives = 229/484 (47%), Gaps = 68/484 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY+ + ELV+R A L G+ GD VAL N+ +FVI + A++RA A P+N
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E E L+DS +++L+ SE D
Sbjct: 62 EAELEHILNDSGARVLI------------------------------------VGSELD- 84
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
DVA+ +TSGTT PKG T + A+ + + LT + LP
Sbjct: 85 -----------DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLP 133
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
LFHV GM + + GA + L R+ + + +Y T +T + T+ +L H
Sbjct: 134 LFHVAGMQGSMNAPIYTGATLVLLT--RWDREAAARAIERYRVTHWTNIVTMVVDLLA-H 190
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA---THLMSSNPLPE 327
+ L+ + A+L P + RL+ G E Y +TE TH P
Sbjct: 191 PRFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFN-----PP 245
Query: 328 DGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
D P KP +G PV G + ++D E G G +GE+ +RGP V KGY N PEA +F+
Sbjct: 246 DRP-KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFI 304
Query: 386 F----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAF 441
+F TGD+GY D +GY + R+K +IN G K+ P EV+A+L HP + +
Sbjct: 305 ELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVI 364
Query: 442 GVPDDKYGEEINCAIIPREG--SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGK 499
G PD + GE + ++ + + EE+++ +C++ +AA+K P+ + +ELPKTASGK
Sbjct: 365 GRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPKTASGK 424
Query: 500 IQRR 503
+ R
Sbjct: 425 VLWR 428
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 2e-95
Identities = 162/504 (32%), Positives = 240/504 (47%), Gaps = 39/504 (7%)
Query: 20 KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
K AL V G TY+ + V R A+ L+ G+ GD VA N+ + +++LA RA
Sbjct: 27 KTAL-VFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAG 85
Query: 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL----DA 135
A P+N T +E + L S ++ L A+AA + L + +L+ +A
Sbjct: 86 AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREA 145
Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAAS-VSNIK 194
+E+ + A + D+A L+TSGT S PKG LT L A VS I
Sbjct: 146 PGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIV 205
Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL---PAAGRFSASTFWQDMI-K 250
+ ++ D + LPL+H + L GA + P I
Sbjct: 206 AG-DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELI------LRTIEA 258
Query: 251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPK--LRFIRSC--SASLAPV-ILSRLEEAF-G 304
T + A PT+ I L RH P + L +R AS+ PV +L L E G
Sbjct: 259 ERITSFFAPPTV-WISLLRH-----PDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPG 312
Query: 305 APVLEAYAMTE----ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAK 359
Y TE AT L PE+ +PGS GRPV E ++D+ G G
Sbjct: 313 LRFYNCYGQTEIAPLATVLG-----PEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV 367
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
GE+ R P + GY ++PE AF GWFH+GD+G D +GY+ +V R K++I GGE
Sbjct: 368 GEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGEN 427
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
++ EV+ L +HP +A+ G+PD K+ E + ++P+ G+ + E+E++ C+ +A
Sbjct: 428 VASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAG 487
Query: 480 FKVPKRVFITNELPKTASGKIQRR 503
FKVPKRV +ELP+ SGKI +R
Sbjct: 488 FKVPKRVIFVDELPRNPSGKILKR 511
|
Length = 523 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 4e-95
Identities = 149/478 (31%), Positives = 217/478 (45%), Gaps = 79/478 (16%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
LT+ + + V + A +L A G+ GD VAL N++EF+++FLA++R A PLN
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
+E + L+D + L AT+
Sbjct: 61 PQEELQQQLADLQPDL---------------------DRPATI----------------- 82
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
+ TSG+T +PK V T N AS LT D+ ++ L
Sbjct: 83 -----------------IFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSL 125
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
PLFHV G LA ++ S AG A+ LP A + + T + VPT Q +L+
Sbjct: 126 PLFHVSG-LAIVMRSLLAGGALVLPDKFDAEAIAEALE--NHGVTHISLVPTQLQRLLES 182
Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN---PLP 326
LR + A + P +L + + G P+ Y MTE +S P
Sbjct: 183 L---GARWLSSLRAVLLGGAPIPPSLLEQARQR-GIPLYPTYGMTE----TASQVATLKP 234
Query: 327 EDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
+D K GSVG+P G+E+ I GE+ +RGP++ GY
Sbjct: 235 DDFLAKLGSVGKPLPGRELRI--------VNPQDGEILVRGPSLFLGYLPQGGLTPPLDE 286
Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
GWFHTGD+GY D++GYL+++GR +LI GGE I P E++AVLL HP + +A GVPD
Sbjct: 287 DGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPD 346
Query: 446 DKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
D++G+ A + + EE+ F +A +K PKR + ELP+ ASGKI R
Sbjct: 347 DEWGQRP-VAFVVPNDDPVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRA 403
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 3e-94
Identities = 165/492 (33%), Positives = 253/492 (51%), Gaps = 47/492 (9%)
Query: 22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
A+ K +T+ +HE V A +L A G+ GD VAL N +E +++ A+ + A
Sbjct: 20 AIEFEEK-KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAV 78
Query: 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
A LN + +E + L D+E K L+T +KL +
Sbjct: 79 AVLLNTRLSREELLWQLDDAEVKCLIT-------DDDFEAKLIP----------GISVKF 121
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVSNIKSVYKLT 200
+ + A + D +VA ++TSGTT +PKGV T N+ ++V + ++ LT
Sbjct: 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLT 180
Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
E D + +P+FH+ G L+ L+ S G V L +F A + + T + V
Sbjct: 181 EDDCWLAAVPIFHISG-LSILMRSVIYGMRVVL--VEKFDAEKINKLLQTGGVTIISVVS 237
Query: 261 TIHQIVLDRHVAK-PEPVYP-KLRFIRSCSASL---APVILSRLEEA--FGAPVLEAYAM 313
T+ L R + + E YP R + L P LE+ G PV ++Y M
Sbjct: 238 TM----LQRLLERLGEGTYPSSFRCM------LLGGGPAPKPLLEQCKEKGIPVYQSYGM 287
Query: 314 TE-ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
TE A+ +++ +P ED K GS G+P+ E+ I + GV +GE+ ++GPNVTK
Sbjct: 288 TETASQIVTLSP--EDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTK 344
Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
GY N +A + F GWF TGDIGY D +G+L+++ R +LI GGE I P E++ VLLS
Sbjct: 345 GYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLS 404
Query: 432 HPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNE 491
HP +A+A GVPDDK+G ++ A + + + EEE+ FC++ +A +KVPKR + E
Sbjct: 405 HPGVAEAGVVGVPDDKWG-QVPVAFVVK-SGEVTEEELRHFCEEKLAKYKVPKRFYFVEE 462
Query: 492 LPKTASGKIQRR 503
LP+ ASGK+ R
Sbjct: 463 LPRNASGKLLRH 474
|
Length = 483 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 2e-91
Identities = 154/508 (30%), Positives = 226/508 (44%), Gaps = 45/508 (8%)
Query: 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
TL LL + + A+ V G LTY + V+R A+ L+A GI GD V +
Sbjct: 13 GDQTLGDLLAANAARHPDRTAV-VDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQ 71
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
PN EFVI++ A+ + A A+ E + SE+K +
Sbjct: 72 LPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADR---------- 121
Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
+L + DVALF + GTT PK +P
Sbjct: 122 ----------------------FSGFDYAALARELLEELPDVALFQLSGGTTGLPKLIPR 159
Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFS 240
T N+ S L + VLP H + + GLL + AG V L S
Sbjct: 160 THNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVL--HHPPS 217
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
+ + + T VP + + L+ LR I+ A L+P + R+E
Sbjct: 218 PDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQAD-LSSLRVIQVGGAPLSPELARRVE 276
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK-PGSVGRPV--GQEIAILDEIGVPQEGG 357
E G P+ + + M E + +D P + GRP+ EI I+D+ G P G
Sbjct: 277 ERLGCPLQQVFGMAEGLVNYTR---LDDPPDVIMRTQGRPISPADEIRIVDDQGEPVPPG 333
Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
GE+ RGP +GY PE N AF G++ TGD+ D+DGY +VGRIK+ INRG
Sbjct: 334 EVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRG 393
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK-K 475
GEKISP E++ +LLSHP +A A G+PD+ GE I ++PR G+ E+ F + +
Sbjct: 394 GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQ 453
Query: 476 NVAAFKVPKRVFITNELPKTASGKIQRR 503
+A FK+P R+ + + LP T GK+ ++
Sbjct: 454 GLAKFKLPDRLEVVDSLPLTPVGKVDKK 481
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 286 bits (735), Expect = 1e-90
Identities = 138/493 (27%), Positives = 217/493 (44%), Gaps = 27/493 (5%)
Query: 27 GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
+LTY + V R A+ L G GD VA+ PN+ E VI LA R A A ++
Sbjct: 37 LFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVS 96
Query: 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSELTL-SLA 144
+ + ++D K+L+ + A + + ++ ++ L
Sbjct: 97 PGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAV 156
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESD 203
S+ L D L+TSGTT +PKG+ + K L D
Sbjct: 157 EKASEKFEFEPL--PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214
Query: 204 ---STVIVLPLFHVHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNAT-WYTA 258
++ ++G+ + S A+GA L +S W+ + KY T + T+
Sbjct: 215 RFWNSS---DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTS 271
Query: 259 VPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
PT + + EP LR + S L P A G +L+ Y TE
Sbjct: 272 -PTF--LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETG 328
Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--VTKGYK 374
+ P K GS G P+ G + +D+ G P G GE+ +R P + Y
Sbjct: 329 MGFIAGRPPV----KNGSSGLPLPGYAVRRVDDEGNPVPPG-VGELVVRLPWPGMALTYW 383
Query: 375 NNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPD 434
N+PE K A+ W+ TGD D DGY L GR ++I G++I P+E+++VLL+HP
Sbjct: 384 NDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPA 443
Query: 435 IAQAVAFGVPDDKYGEEINCAIIPREGSNIDE--EEVLRFCKKNVAAFKVPKRVFITNEL 492
+A+A GVPD G+ + ++ G +E EE+ R +N+ +P+++ +EL
Sbjct: 444 VAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDEL 503
Query: 493 PKTASGKIQRRIV 505
PKTASGKIQRR++
Sbjct: 504 PKTASGKIQRRLL 516
|
Length = 528 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 2e-90
Identities = 172/551 (31%), Positives = 267/551 (48%), Gaps = 50/551 (9%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL+ L + + +F + AL G TY+ + + V RAA+ L A G+ GD VA+ PN
Sbjct: 33 TLVDLYDNAVARFGDRPALDFFGA-TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPN 91
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---------------TP 109
+ ++ F AV+R A N YT E E D +++ + TP
Sbjct: 92 CPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTP 151
Query: 110 AEG-------NA--AAQAAASKLNISHATAT--LLDADSELTLS----LAHSE-SDTNAI 153
E A Q A +L I L + T+ + + D + +
Sbjct: 152 LETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDV 211
Query: 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVI-VLPL 211
S P DVAL L+TSGTT +PKG LT NL A+ + K+ V L + V+ LP+
Sbjct: 212 SHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPM 271
Query: 212 FHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
FH +G+ L L+ G V LP M K+ TW VP +++ + +
Sbjct: 272 FHAYGLTLCLTLAVSIGGELVLLP---APDIDLILDAMKKHPPTWLPGVPPLYEKIAE-- 326
Query: 271 VAKPEPVYPKLRFIR---SCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
A+ V L +R S + +L + E+ G ++E Y +TE + ++ NP+ +
Sbjct: 327 AAEERGV--DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD 384
Query: 328 DGPHKPGSVGRPV-GQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
D +PG VG P E+ I+D + G +GE+ +RGP V KGY N PE +F
Sbjct: 385 D--RRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF 442
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
L GWF TGD+ + DG++ +V RIKELI GG + P EV+ VL HP + A G+P
Sbjct: 443 LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLP 502
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRI 504
+ EE+ A++ G+ +D E + +C++++ +KVP+R + +ELP+ GK++RR
Sbjct: 503 REDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRRE 562
Query: 505 VSEHFLAQVSA 515
V E L ++ A
Sbjct: 563 VREELLEKLGA 573
|
Length = 573 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 4e-88
Identities = 143/483 (29%), Positives = 232/483 (48%), Gaps = 25/483 (5%)
Query: 31 LTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+TY ++HE V + A+ L+ + G+ +A+ N++E++++ A+ + A PLN
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
T +E F L DS + +L A + + + + L +
Sbjct: 88 TENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI-----TSLKEIEDRKIDN 142
Query: 150 TNAISKLTNDPSDVALFL--HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
+ ++ A F+ +TSGTT +PKG LTQ N+ + N LT D +++
Sbjct: 143 FV-------EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIV 195
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
+LPLFH+ G+ + AG + +P +F + + K+ T VPTIHQ ++
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVP--RKFEPTKALSMIEKHKVTVVMGVPTIHQALI 253
Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA--THLMSSNPL 325
+ +R+ + A P L R G + + MTE T M S
Sbjct: 254 NC-SKFETTNLQSVRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSE-- 309
Query: 326 PEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
ED K GS+G+PV + ++DE E G GE+ IRGPNV K Y N P+A +
Sbjct: 310 -EDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI 368
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
GW TGD+ D DG++++VGR KE+I GGE I P+EV+ V+ D+ + G
Sbjct: 369 QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQ 428
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRI 504
K+GE I+ + S + E++V+ C+ +A +K+PK + ELPK A+GKIQ+
Sbjct: 429 HVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQ 488
Query: 505 VSE 507
+
Sbjct: 489 LVN 491
|
Length = 496 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 7e-88
Identities = 145/482 (30%), Positives = 223/482 (46%), Gaps = 20/482 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY + E V R + L GI + V L +T EF F I+ A P+N T
Sbjct: 31 LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA-----H 145
PD++ +YL+DS +++L+ E + A K + ++ LS A
Sbjct: 91 PDDYRYYLNDSRARVLVISEELWEVLKPALQK-DPHLRHVIVVGGAGPGALSYAQLIATA 149
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDS 204
+E A + D+A +L++SG+T RPKGV +++ + K+V +TE D
Sbjct: 150 AEELEAAATS----ADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDV 205
Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
LF +G+ GL + GA L R + + + +Y T + VPT++
Sbjct: 206 VFSAAKLFFAYGLGNGLYFPLSVGATTVL-MPERPTPDAVFATIERYKPTVFFGVPTLYA 264
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
+L + LR S +L I R +E FG +L+ TE H+ SN
Sbjct: 265 AMLAAPEKPERDLS-SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSN- 322
Query: 325 LPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
P K G+ G+PV G E+ ++DE G G GE+ +RG + GY N E +
Sbjct: 323 RPGA--VKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRET 380
Query: 384 FLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGV 443
F+ W TGD Y D DGY GR +++ G +SP EV+ LL HP + +A G
Sbjct: 381 FVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGA 440
Query: 444 PDDKYGEEINCAIIPREG---SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
D+ + ++ ++G S E E+ F K +A +K P+ + +ELPKTA+GKI
Sbjct: 441 EDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKI 500
Query: 501 QR 502
QR
Sbjct: 501 QR 502
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 272 bits (699), Expect = 1e-85
Identities = 162/489 (33%), Positives = 241/489 (49%), Gaps = 28/489 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TY + R A+ LVA G+ GD VA+ + E + ++LA +RA A PLN AYT
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS-LAHSESD 149
E ++++ D+E L++ A A+ H LDAD +L A + D
Sbjct: 89 LAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVET--LDADGTGSLLEAAAAAPD 146
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
+ D+A L+TSGTT R KG L+ NL ++ + ++ T D + L
Sbjct: 147 DFET--VPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHAL 204
Query: 210 PLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH----- 263
P+FH HG+ + AGA+ + LP +F M + AT VPT +
Sbjct: 205 PIFHTHGLFVATNVALLAGASMIFLP---KFDPDAVLALMPR--ATVMMGVPTFYTRLLQ 259
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323
+ L R A +R S SA L +E G +LE Y MTE T++ +SN
Sbjct: 260 EPRLTREAAA------HMRLFISGSAPLLAETHREFQERTGHAILERYGMTE-TNMNTSN 312
Query: 324 PLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
P DG + G+VG P+ G + + D E G G G + ++GPNV KGY PE
Sbjct: 313 PY--DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTA 370
Query: 382 SAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
F G+F TGD+G D GY+H+VGR K+LI GG + P EV+ + P + ++
Sbjct: 371 EEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAV 430
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
GVP +GE + ++P+ G+ +DE +L K +A FK PKRVF +ELP+ GK+
Sbjct: 431 IGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKV 490
Query: 501 QRRIVSEHF 509
Q+ ++ E +
Sbjct: 491 QKNLLREQY 499
|
Length = 504 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 5e-85
Identities = 116/352 (32%), Positives = 185/352 (52%), Gaps = 13/352 (3%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
D+A ++TSG+T PKGV L+ NL A +I +LTE D + VLP +G L+
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYG-LS 59
Query: 220 GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP 279
LL++F G + L + F + + K T + VPT +L E +P
Sbjct: 60 QLLTAFRVGGTLVLESRFAFPR-DVLKHLAKERITGFAGVPTTWAQLLRLDPLARED-FP 117
Query: 280 KLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGR 338
LR++ + +L + +L AF A + Y +TEA S+ PE+ +P S+G+
Sbjct: 118 SLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFR--STYLPPEELDRRPDSIGK 175
Query: 339 PV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG------WFHT 391
+ E+ ++DE G G GE+ RG NV KGY N+PEA G +T
Sbjct: 176 AIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYT 235
Query: 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451
GD+ D +GYL+ VGR ++I G ++SP E++ V+ +HP +A+A GVPD G+
Sbjct: 236 GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQA 295
Query: 452 INCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
I ++ +G ++DE+E+L+ C+K++ + VP + + LPK A+GK+ R
Sbjct: 296 IVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRS 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 1e-82
Identities = 138/467 (29%), Positives = 210/467 (44%), Gaps = 92/467 (19%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+T++ + E V R A+ L+A G+ GD VA+ N E+VI LA++ A A P+
Sbjct: 5 TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
+P+E + L+DS ++++
Sbjct: 65 SPEEVAYILNDSGARVVFV----------------------------------------- 83
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
+ P D+A ++TSGTT PKGV LT NL A + + V L+ D + L
Sbjct: 84 -------EDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFL 136
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP----TIHQI 265
PL HV G ++GA V S T +D+ + T + AVP I+
Sbjct: 137 PLAHVFEQRLGEYLPLSSGARVNFAE----SPETLLEDLREVRPTVFFAVPRVWEKIYAG 192
Query: 266 VLDRHVAKPEP---VY------PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
+ + A ++ +LRF S A L P +L A G P+LE Y +TE
Sbjct: 193 IEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF-RALGIPILEGYGLTET 251
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
+ + + N G + G+VG+P+ G E+ I ++ GE+ +RGPNV KGY
Sbjct: 252 SGVATVNRP---GDIRIGTVGKPLPGVEVRIAED----------GEILVRGPNVMKGYYK 298
Query: 376 NPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGEKISPIEVDAVLLSHP 433
NPEA A GW HTGDIG D DG+L + R K+LI GG+ I+P ++ L + P
Sbjct: 299 NPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASP 358
Query: 434 DIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF 480
I+QAV G D Y A+I +D E + ++ +++ F
Sbjct: 359 YISQAVVVGD-DRPY----LTALI-----VLDPEALEKWAEQHGLPF 395
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 5e-81
Identities = 156/498 (31%), Positives = 234/498 (46%), Gaps = 40/498 (8%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY ++ R AS L GI GDVVA+ PNT + V A A PLN
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS--------- 142
D+ F L+ SE+K+L E + A+ A + L+ T + S
Sbjct: 91 DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDL 150
Query: 143 LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES 202
LA + D I D D +TSGTT PKGV T A ++ + +V +
Sbjct: 151 LAGGDPDPLPIPPD--DEWDPISLNYTSGTTGNPKGVVYTHRG--AYLNALGNVIEWGMP 206
Query: 203 DSTVI--VLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAV 259
D V LP+FH +G + A G V L + A + + K+ T
Sbjct: 207 DRPVYLWTLPMFHCNGW-CFPWAITAVGGTHVCLR---KVDAPAIYDLIEKHKVTHLCGA 262
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
PT+ ++ + A P+ +R + + + P ++ ++EE G V Y +TE
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAPP-PPAVIKKMEEL-GFEVTHVYGLTETYGP 320
Query: 320 MSSNPLPEDGPHKPGS----------VGRPVGQEIAILDEIG---VPQEGGAKGEVCIRG 366
++ + P V +E+ ++D VP++G GE+ +RG
Sbjct: 321 ITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRG 380
Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
V KGY NPEA + AF GWFH+GD+ DGY+ + R K++I GGE IS IEV+
Sbjct: 381 NTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVE 440
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAII-PREGSNIDEEEVLRFCKKNVAAFKVPKR 485
VL HP + +A PD+K+G E CA + + G+++ EEE++ +C++ +A FKVPK
Sbjct: 441 GVLYKHPAVLEAAVVARPDEKWG-ETPCAFVVLKPGASVTEEELIEYCREKLAHFKVPKT 499
Query: 486 V-FITNELPKTASGKIQR 502
V F+ ELPKTA+GKIQ+
Sbjct: 500 VEFV--ELPKTATGKIQK 515
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-80
Identities = 162/517 (31%), Positives = 241/517 (46%), Gaps = 48/517 (9%)
Query: 15 DQFSSKRAL---SVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVI 70
D + K AL S G +Y ++E + R A+ + GI GD VAL N EF+
Sbjct: 18 DVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIF 77
Query: 71 MFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG----NAAAQAAASKLN-- 124
+ + + A P+NA +E + L +S++ LL+T A+ Q A+ L
Sbjct: 78 CWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHI 137
Query: 125 -ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
++ D S T A + L+ D D A L TSGTTSRPKGV +T
Sbjct: 138 CLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGVVITH 195
Query: 184 NNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
NL + S ++ L + D + V+P FH+ +++F+AGA T ++SA
Sbjct: 196 YNL--RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGA--TFVLLEKYSA 251
Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-----KLRFIR-----SCSASL 291
FW + KY AT +P + + ++ +P LR + S
Sbjct: 252 RAFWGQVCKYRATITECIPMMIRTLM------VQPPSANDRQHCLREVMFYLNLSDQEKD 305
Query: 292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI 350
A EE FG +L +Y MTE + + P D P S+GRP E I D+
Sbjct: 306 A------FEERFGVRLLTSYGMTETIVGIIGDR-PGDKRRWP-SIGRPGFCYEAEIRDDH 357
Query: 351 GVPQEGGAKGEVCIRG-PNVT--KGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLV 406
P G GE+CI+G P T K Y +P+A GW HTGD GY D +G+ + V
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFV 417
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE 466
R +I RGGE +S +E++ ++ +HP I V G+ D E I ++ EG + E
Sbjct: 418 DRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSE 477
Query: 467 EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
EE FC++N+A FKVP + I +LP+ SGKI ++
Sbjct: 478 EEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKK 514
|
Length = 517 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-78
Identities = 168/518 (32%), Positives = 231/518 (44%), Gaps = 59/518 (11%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
TY+ + V R A+ L + G+ GDVVA PN E A A P+N
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLL 116
Query: 90 TPDEFEFYLSDSESKLLLT------------------------------PAEGNAAAQAA 119
P++ L + +K+L+T A +
Sbjct: 117 EPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRL 176
Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
A L A A +LD D+EL + S P DVA + HT GTT PK
Sbjct: 177 AVPLIRRKAHARILDFDAELA-----RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLA 231
Query: 180 PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAG 237
T N A+ + L D+ LPLFHV+ +L L+ A GA V L P
Sbjct: 232 QHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGY 291
Query: 238 RFSA--STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
R + FW+ + +Y + + VPT++ +L V LR+ +A L +
Sbjct: 292 RGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD--GHDISSLRYALCGAAPLPVEV 349
Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQE--IAILDEIG- 351
R E A G ++E Y +TEAT + S NP DG + GSVG + Q + ILD+ G
Sbjct: 350 FRRFEAATGVRIVEGYGLTEATCVSSVNPP--DGERRIGSVGLRLPYQRVRVVILDDAGR 407
Query: 352 --VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR 408
G +CI GPNV GY NK +L GW +TGD+G D+DGY L GR
Sbjct: 408 YLRDCAVDEVGVLCIAGPNVFSGYLE-AAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGR 466
Query: 409 IKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP-REGSNIDEE 467
K+LI RGG I P ++ LL HP +A A A G PD G E+ A + + G++ E
Sbjct: 467 AKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAG-ELPVAYVQLKPGASATEA 525
Query: 468 EVLRFCKKNV---AAFKVPKRVFITNELPKTASGKIQR 502
E+L F + ++ AA VPK V I + LPKTA GKI +
Sbjct: 526 ELLAFARDHIAERAA--VPKHVRILDALPKTAVGKIFK 561
|
Length = 632 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 2e-78
Identities = 162/523 (30%), Positives = 247/523 (47%), Gaps = 66/523 (12%)
Query: 31 LTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
++Y + E ER A L G+ GD V L N+ +FVI + A++RA A P+N
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMN 95
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT----LLDADSELTL-SLA 144
+E Y++DS +++ + +E A L + H L A+ E+ + +
Sbjct: 96 REEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWL 155
Query: 145 HSESDTNAISK------------------LTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
+E A++ T P D+A+ +TSGTT PKG T +
Sbjct: 156 RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTV 215
Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTLP-----AAGRFS 240
A+ T + VLPLFHV GM+ + + AGA V +P AA R
Sbjct: 216 MANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL- 274
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILS 297
+ +Y T +T +PT+ V+D +A P E LR+I A++ +
Sbjct: 275 -------IERYRVTHWTNIPTM---VVD-FLASPGLAERDLSSLRYIGGGGAAMPEAVAE 323
Query: 298 RLEEAFGAPVLEAYAMTE---ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIG- 351
RL+E G +E Y +TE TH SNP D P K +G P G + ++D E
Sbjct: 324 RLKELTGLDYVEGYGLTETMAQTH---SNPP--DRP-KLQCLGIPTFGVDARVIDPETLE 377
Query: 352 -VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--LFG--WFHTGDIGYFDSDGYLHLV 406
+P G GE+ + GP V KGY N PEA AF + G +F TGD+G D +GY +
Sbjct: 378 ELPP--GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFIT 435
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS--NI 464
R+K +IN G K+ P EV+ +L HP I +A PD + GE + ++ R +
Sbjct: 436 DRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKT 495
Query: 465 DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
EEE++ + ++++AA+K P+ V + LPK+ SGKI R + E
Sbjct: 496 TEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQE 538
|
Length = 546 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 6e-78
Identities = 148/474 (31%), Positives = 227/474 (47%), Gaps = 44/474 (9%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
T+ + A L A GI +G VAL N++E V++ A + A A LN T
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
+E L D + +LLLT S L A D+ + + +T+
Sbjct: 61 NERTNQLEDLDVQLLLTD-----------SLLEEKDFQA---DSLDRIEAA---GRYETS 103
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
+ D +A + TSGTT +PK VP T N AS K TE D+ ++ LPL
Sbjct: 104 LSASFNMD--QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPL 161
Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK-YNATWYTAVPTIHQIVLDRH 270
+H+ G L+ L GA + + +F+ +MI T + VPT L+R
Sbjct: 162 YHISG-LSILFRWLIEGATLRIVD--KFNQ---LLEMIANERVTHISLVPTQ----LNRL 211
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSNPLPEDG 329
+ + + + SA AP+I + G P+ +Y MTE + + ++ P +
Sbjct: 212 LDEGGHNENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATP---EM 266
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388
H VGRP+ G+EI +I V + G GE+ ++G N+ KGY E + GW
Sbjct: 267 LHARPDVGRPLAGREI----KIKVDNKEGH-GEIMVKGANLMKGYLYQGELTPAFEQQGW 321
Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448
F+TGDIG D +G+L+++GR +LI GGE I P E++ VL HP I +AV PD ++
Sbjct: 322 FNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEW 381
Query: 449 GEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
G ++ A I E S+I + +++ + + +A +KVP +ELP ASGKI R
Sbjct: 382 G-QVPVAYIVSE-SDISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 8e-78
Identities = 150/501 (29%), Positives = 239/501 (47%), Gaps = 33/501 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFP-NTVEFVIMFLAVIRARATAAPLNAAY 89
TY+ + V R A+ L + G+ GD VA T NT + ++ AV A LN
Sbjct: 26 YTYADFYRRVRRLANALESLGVKPGDRVA-TLAWNTHRHLELYFAVPGMGAVLHTLNPRL 84
Query: 90 TPDEFEFYLSDSESKLL-----LTPAEGNAAAQAAASKLNISHATATLLDADSELTLS-- 142
+P++ + ++ +E K++ P A + K + + A + + +
Sbjct: 85 SPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYE 144
Query: 143 -LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT--QNNLAASVSNIKSVYKL 199
L ES +L D + A +TSGTT PKGV + L S + L
Sbjct: 145 ELLEEESPEYEWPEL--DENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGL 202
Query: 200 TESDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYT 257
+ESD+ + V+P+FHV+ GL ++ GA + LP GR+ ++ + + T
Sbjct: 203 SESDTVLPVVPMFHVNAW--GLPYAATMVGAKLVLP--GRYLDPASLLDLIEEEKVTVSA 258
Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
VPTI +L+ ++ LR + S P L E G V+ A+ MTE +
Sbjct: 259 GVPTIWLGLLN-YLEANGKDLSSLRRV-VVGGSALPRSLIEKLEERGVEVIHAWGMTETS 316
Query: 318 HLMSSNPLPEDGPHKPG--------SVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRG 366
L + + L P GRPV G E+ I+D+ G +P +G GE+ +RG
Sbjct: 317 PLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRG 376
Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
P VT Y +PE + GWF TGD+ D DGY+ + R K++I GGE IS +E++
Sbjct: 377 PWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELE 436
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRV 486
L++HP +A+A GVP +K+GE ++ + G+ + EEE+L K VA + +P RV
Sbjct: 437 NALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPDRV 496
Query: 487 FITNELPKTASGKIQRRIVSE 507
+E+PKT+ GK ++ + E
Sbjct: 497 VFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 2e-77
Identities = 173/517 (33%), Positives = 248/517 (47%), Gaps = 48/517 (9%)
Query: 14 IDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIM 71
+ +FS + L +G+ TY+ + L R A+ L GI GDVV L PN EFV+
Sbjct: 33 LSEFSDRPCLIDGATGR-VYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLA 91
Query: 72 FLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT 131
FL R A N YTP E S +KL++T + T
Sbjct: 92 FLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQS---CYVDKLKGLAEDDGVTVV 148
Query: 132 LLDADSELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV 190
+D E L + +++D N + ++ P DV ++SGTT PKGV LT L SV
Sbjct: 149 TIDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV 208
Query: 191 S--------NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
+ N+ D + VLP+FH++ + + LL GAA+ + +F
Sbjct: 209 AQQVDGENPNLY----FHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP--KFEIG 262
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILS 297
+ + ++ T P + IVL +AK PV K +R + S +A L
Sbjct: 263 ALLELIQRHKVT---IAPFVPPIVLA--IAK-SPVVEKYDLSSIRMVLSGAAPLG----K 312
Query: 298 RLEEAFGAPVLEA-----YAMTEATHLMSSNP--LPEDGPHKPGSVGRPV-GQEIAILD- 348
LE+AF A + A Y MTEA +++ E P K GS G V E+ I+D
Sbjct: 313 ELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDP 372
Query: 349 EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVG 407
E G GE+CIRGP + KGY N+PEA + GW HTGDIGY D D L +V
Sbjct: 373 ETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVD 432
Query: 408 RIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR-EGSNIDE 466
R+KELI G +++P E++A+L+SHP IA A + D+ G E+ A + R GS I E
Sbjct: 433 RLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG-EVPVAFVVRSNGSEITE 491
Query: 467 EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+E+ +F K V +K +VF + +PK SGKI R+
Sbjct: 492 DEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRK 528
|
Length = 537 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 2e-77
Identities = 161/522 (30%), Positives = 244/522 (46%), Gaps = 32/522 (6%)
Query: 9 LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE- 67
L Q +F + AL V G T+ I V+ A+ L A G+ GD + + N +
Sbjct: 12 FLRQAARRFPDRIAL-VWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQM 70
Query: 68 FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH 127
F MF A R A P N TPDE + S ++ ++ + AAA
Sbjct: 71 FESMF-AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMI--CHADFPEHAAA------- 120
Query: 128 ATATLLDADSELTLSLAHSESDTNAI---------SKLTNDPSDVALFLHTSGTTSRPKG 178
A D + + A + D A+ + D D F TSGTT RPK
Sbjct: 121 VRAASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKA 180
Query: 179 VPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236
LT +A ++N + TE D++++V PL H G+ L A GAA L +
Sbjct: 181 AVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ--LCQVARGAATVLLPS 238
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
RF + W + ++ T VPTI ++ L H A + LR++ A +
Sbjct: 239 ERFDPAEVWALVERHRVTNLFTVPTILKM-LVEHPAVDRYDHSSLRYVIYAGAPMYRADQ 297
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNP----LPEDGPH-KPGSVGRP-VGQEIAILDEI 350
R G +++ + + E T ++ P EDGP + G+ G G E+ I D+
Sbjct: 298 KRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDE 357
Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIK 410
G G GE+C+ GP V GY NNPEAN AF GWF TGD+G+ D+ G+L++ GR
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRAS 417
Query: 411 ELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470
++ GG + P E++ LL+HP +++ GVPD +GE + R+G+ +DE E+L
Sbjct: 418 DMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELL 477
Query: 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512
+ VA +K+PKR F + LPK+ GKI +++V E +
Sbjct: 478 AWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519
|
Length = 528 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 2e-77
Identities = 140/477 (29%), Positives = 218/477 (45%), Gaps = 60/477 (12%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY +H+L R A+ L A G++ GD V L P++ E V FLA ++A A A LN T
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P + E L DS + LL+T
Sbjct: 71 PQDLEHILDDSGAALLVT------------------------------------------ 88
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDSTVIVL 209
+ D+A +L+TSGTT +PKGV + + + L D
Sbjct: 89 --------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSS 140
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
LF +G+ LL +GA+ L G + + ++ T VP +++ +L+
Sbjct: 141 KLFFAYGLGNSLLFPLFSGASAVL-LPGWPTPEAVLDLLARHRPTVLFGVPALYRALLES 199
Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
P++ +R S +L + R EA G +L+ TE H+ SN G
Sbjct: 200 GAG-SAPLFRSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISN---RPG 255
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388
+PG+ GRPV G E ++DE G G G++ +RGP++ GY N PE + GW
Sbjct: 256 AARPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTLRDGW 315
Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448
TGD D+DG+ GR ++I G+ +SP+EV+A L HP +A+A VPD+
Sbjct: 316 LRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDG 375
Query: 449 GEEINCAIIPREGSNID---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
+ ++PR G I E ++ RF ++ +A +K P+++ + LP+TA+GK+QR
Sbjct: 376 LVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQR 432
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 2e-76
Identities = 174/532 (32%), Positives = 266/532 (50%), Gaps = 44/532 (8%)
Query: 10 LNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
+ Q+ ++ K+AL GK D+T+S H+ V+R A+ L G+ GD VA+ PN + V
Sbjct: 30 VEQMASRYPEKKALHFLGK-DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88
Query: 70 IMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT 129
I + + A N YT E E+ L DS +K++L S I H
Sbjct: 89 IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVI 148
Query: 130 ATLLDAD---------------SELTLSLAHSESDT----NAISKLTN-------DP-SD 162
T + AD + L + SES+T N++ K N DP +D
Sbjct: 149 VTRI-ADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEND 207
Query: 163 VALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVI-VLPLFHVHGMLAG 220
+AL +T GTT PKGV LT NL + ++ ++ +Y E + V+ VLP FHV+GM A
Sbjct: 208 LALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAV 267
Query: 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK 280
+ S G + L +F ++ + K+ T + PTI+ +L+ + K +
Sbjct: 268 MNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISS- 324
Query: 281 LRFIRSCSASLAPV---ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
IR+C + AP+ + + E G ++E Y +TE++ + SN L E PGS+G
Sbjct: 325 ---IRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEK--RVPGSIG 379
Query: 338 RPVGQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395
P A++ E G G GE+ ++GP + KGY N PE + GW HTGD+G
Sbjct: 380 VPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG 439
Query: 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA 455
Y D DG+ ++ R K++I G + P EV+ VL H + + V GVPD GE +
Sbjct: 440 YMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAF 499
Query: 456 IIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
++ +EG+ EEE+ +F +K +AA+KVPK +ELPKT GKI RR++ E
Sbjct: 500 VVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIE 551
|
Length = 563 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 6e-76
Identities = 170/537 (31%), Positives = 246/537 (45%), Gaps = 48/537 (8%)
Query: 3 GVTLIGLLNQVIDQFSSKRAL-SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
T+ LL++ ++ + AL TY +E V+ A L+A GI GD V +
Sbjct: 15 EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW 74
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL--------------- 106
PN E+V+ A + A +N AY E E+ L+ S K L
Sbjct: 75 APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAML 134
Query: 107 --LTPAEGNAAAQAAASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKL 156
L P S L + EL + A +
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQA 194
Query: 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHG 216
T DP D +TSGTT PKG LT N+ + I KLTE D I +PL+H G
Sbjct: 195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFG 254
Query: 217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP 276
M+ G L+ GA + P G F + + T VPT+ LD P
Sbjct: 255 MVLGNLACVTHGATMVYPGEG-FDPLATLAAVEEERCTALYGVPTMFIAELD------HP 307
Query: 277 VYPK--LRFIRS--CSASLAPV-ILSRLEEAFGAP-VLEAYAMTEATHLM--SSNPLPED 328
+ + L +R+ + S P+ ++ R+ + V AY MTE + + + P +
Sbjct: 308 DFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLE 367
Query: 329 GPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF 386
+ +VGR + E+ I+D E G G +GE+C RG +V KGY N+PE A
Sbjct: 368 --KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDA 425
Query: 387 -GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
GW HTGD+ D +GY+++VGRIK++I RGGE I P E++ L +HP I GVPD
Sbjct: 426 DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPD 485
Query: 446 DKYGEEINCA-IIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQ 501
+KYGEE+ CA II R G+ + EE+V FC+ +A +K+P+ + +E P T +GKIQ
Sbjct: 486 EKYGEEV-CAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQ 541
|
Length = 559 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 2e-75
Identities = 159/496 (32%), Positives = 240/496 (48%), Gaps = 33/496 (6%)
Query: 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
RA V +++Y+ H+ + +AA L A GI GDVVAL N+ F+ + A A
Sbjct: 18 RAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGA 77
Query: 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSEL 139
P+N DE + L D+ +KLLL E +A K+ I + A A
Sbjct: 78 VFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQA------DSR 131
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
L+ E A P+D+ ++TSGTT RPKGV + NL + L
Sbjct: 132 RLAQGGLEIPPQAAVA----PTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL 187
Query: 200 TESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY--NATWY 256
T S+ ++V PL+HV L G+ + G TL F + ++ W
Sbjct: 188 TASERLLVVGPLYHVGAFDLPGIAVLWVGG---TLRIHREFDPEAVLAAIERHRLTCAWM 244
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE---AF-GAPVLEAYA 312
V +L R + P+ L + C SR+ + F A ++AY
Sbjct: 245 APV------MLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYG 298
Query: 313 MTEATHLMSSNPLPEDGPH--KPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNV 369
+TE S + L E G K GS GR + EI I D G KGE+C+RGP V
Sbjct: 299 LTET---CSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKV 355
Query: 370 TKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
TKGY +PE AF WF +GD+GY D +G+L+L R K++I GGE I+ EV+ V+
Sbjct: 356 TKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVI 415
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
P++A+A GV DD++GE I ++ G+ + E + R C++ +A+FKVP+++ +
Sbjct: 416 YELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVR 475
Query: 490 NELPKTASGKIQRRIV 505
+ELP+ SGK+ +R++
Sbjct: 476 DELPRNPSGKVLKRVL 491
|
Length = 497 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-75
Identities = 160/532 (30%), Positives = 234/532 (43%), Gaps = 33/532 (6%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVA 59
+ T+ + + +F + AL V + T+ ++ + V+R A L+A G+ GD V
Sbjct: 15 LLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVG 74
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP---------- 109
+ PN E+++ A R A +N AY E E+ L S + ++
Sbjct: 75 IWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHA 134
Query: 110 ---------AEGNAAAQAAAS--KLN--ISHA---TATLLDADSELTLSLAHSESDTNAI 153
AEG A A +L +S A L S
Sbjct: 135 MLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAER 194
Query: 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFH 213
+ D D +TSGTT PKG L+ +N+ + + LTE D + +PL+H
Sbjct: 195 QA-SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYH 253
Query: 214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
GM+ L GA + P F Q + + T VPT+ LD H +
Sbjct: 254 CFGMVLANLGCMTVGACLVYPNEA-FDPLATLQAVEEERCTALYGVPTMFIAELD-HPQR 311
Query: 274 PEPVYPKLRFIRSCSASLAPVILSR-LEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
LR A ++ R ++E A V AY MTE + + +D +
Sbjct: 312 GNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERR 371
Query: 333 PGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFH 390
+VGR E+ ++D G G GE+C RG +V KGY NNPEA + GW H
Sbjct: 372 VETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431
Query: 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE 450
TGD+ D GY+ +VGR K++I RGGE I P E++ L +HP +A FGVPD+KYGE
Sbjct: 432 TGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGE 491
Query: 451 EINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
EI + G EEE+ FCK +A FKVP+ +E P T +GK+Q+
Sbjct: 492 EIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQK 543
|
Length = 558 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-75
Identities = 151/501 (30%), Positives = 237/501 (47%), Gaps = 26/501 (5%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TYS + R A+ L+A GI GD VA P EF I++LA ++ A + PL ++
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 92 DEFEFYLSDSESKLLLTP---AEGNAAAQAAASKLNISHAT-ATLLD----ADSELTLS- 142
E + L+ ++K+ P + + + +D A S L+LS
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQ 170
Query: 143 -LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
+A E T AI T ++A L TSGT PKGV LT NN+ AS + LT
Sbjct: 171 IIADYEPLTTAI---TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTW 227
Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATW-YTAVP 260
D ++ PL H G L G+ + F GA L F+ + + T A P
Sbjct: 228 QDVFMMPAPLGHATGFLHGVTAPFLIGARSVL--LDIFTPDACLALLEQQRCTCMLGATP 285
Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT-HL 319
I+ ++ + K LRF C + P ++R + G +L Y TE++ H
Sbjct: 286 FIYDLL--NLLEKQPADLSALRFFL-CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHA 342
Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
+ L + + G G EI ++DE G +GE RGPNV GY + PE
Sbjct: 343 VV--NLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPE 400
Query: 379 A-NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
++ GW+++GD+ D GY+ + GR K++I RGGE IS EV+ +LL HP I
Sbjct: 401 LTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHD 460
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDE-EEVLRF-CKKNVAAFKVPKRVFITNELPKT 495
A +PD++ GE ++ + + EEV+ F +K VA +K P+ + + ++LP+T
Sbjct: 461 ACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRT 520
Query: 496 ASGKIQRRIVSEHFLAQVSAA 516
ASGKIQ+ ++ + + +++
Sbjct: 521 ASGKIQKFLLRKDIMRRLTQD 541
|
Length = 547 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 6e-73
Identities = 133/357 (37%), Positives = 178/357 (49%), Gaps = 21/357 (5%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
P D+A + HT GTT PK + N A+ + L D + LPLFHV G +
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60
Query: 220 GLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE 275
L+ A GA V LP F + FW+ + +Y T +AVPT+ +L + +
Sbjct: 61 TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDAD 120
Query: 276 PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
LR+ + +A L + R E G PV+E Y MTE T + + NP GP +PGS
Sbjct: 121 I--SSLRYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINP--RGGPRRPGS 176
Query: 336 VGRPV-GQ--EIAILDEIGVPQEG---GAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GW 388
VG + +A LD G G G + IRGPNV GY N N A L GW
Sbjct: 177 VGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLN-DAHNAGARLEDGW 235
Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448
+TGD+G D+DGYL L GR K+LI RGG I P ++ LL HP +A A A G PD
Sbjct: 236 LNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYA 295
Query: 449 GEEINCAIIPREGSNIDEEEVLRFCKKNV---AAFKVPKRVFITNELPKTASGKIQR 502
GE + + G+ + E E+L F K + AA VPK ++I + LP TA GKI +
Sbjct: 296 GELPVAYVQLKPGATVTEGELLAFVKARIPERAA--VPKAIYIIDALPLTAVGKIFK 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 1e-71
Identities = 156/493 (31%), Positives = 236/493 (47%), Gaps = 32/493 (6%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
TY + LV+R A L G+ GDVV+ PN EF +++LA R A PL +
Sbjct: 55 RFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIF 114
Query: 90 TPDEFEFYLSDSESKLLLTPAE---GNAAAQAAASKLNISHATATLL----DADS-ELTL 141
E F L +ESK+L+ P + AA A + + ++ ADS E L
Sbjct: 115 RERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALL 174
Query: 142 SLAHSESDTNAISKLTN---DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
E + +A + L P DV ++TSGTT PKGV T N L A++
Sbjct: 175 ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG 234
Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-----PAAGRFSASTFWQDMIKYNA 253
L D ++ P+ H G + GL+ GA L PA R + ++I+
Sbjct: 235 LGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPA--RAA------ELIRTEG 286
Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
+T T L R V + LR A + ++ R A GA ++ A+ M
Sbjct: 287 VTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGM 346
Query: 314 TEATHLMSSNPLPEDGPHKPG-SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
TE + + +D + + G P+ G E+ ++D G P G G + +RG +
Sbjct: 347 TE--NGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFG 404
Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
GY P+ N + GWF TGD+ D+DGY+ + GR K++I RGGE I +E++A+L
Sbjct: 405 GYLKRPQLNGTDAD-GWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYR 463
Query: 432 HPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDEEEVLRFCK-KNVAAFKVPKRVFIT 489
HP IAQ PD++ GE CA ++PR G ++D EE++ F K + VA +P+R+ +
Sbjct: 464 HPAIAQVAIVAYPDERLGERA-CAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVR 522
Query: 490 NELPKTASGKIQR 502
+ LP+T SGKIQ+
Sbjct: 523 DALPRTPSGKIQK 535
|
Length = 547 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 5e-70
Identities = 139/507 (27%), Positives = 224/507 (44%), Gaps = 38/507 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY + R A L A G+ GDVVA+ N EF ++ A R+ P+N T
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAH---SE 147
E + + DS +K+L+ A A A++L ++ S ++
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQ 131
Query: 148 SDTNAISKLTNDPSDV---ALFLHTSGTTSRPKGV--PLTQNNL--AASVSNIKSVYKLT 200
DT +D A L++SGTT RPKG+ PL + A + + +
Sbjct: 132 PDT--------PIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMY 183
Query: 201 ESDSTVIVL--PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
+V + PL+H + G+ + G V + +F A + +Y T
Sbjct: 184 GGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME---KFDAEEALALIERYRVTHSQL 240
Query: 259 VPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
VPT V R + PE V + LR +A + + + +G + E YA
Sbjct: 241 VPT--MFV--RMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYAS 296
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
+E + ED PGSVG+ V E+ ILDE G G G V Y
Sbjct: 297 SEGGGVTVITS--EDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEY 354
Query: 374 KNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
N+PE +A GW GD+GY D DGYL+L R ++I GG I P E++ +L++H
Sbjct: 355 HNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTH 414
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFIT 489
P +A FGVPD++ GE + + P +G++ + E++ + + +A +K P+ +
Sbjct: 415 PKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFE 474
Query: 490 NELPKTASGKIQRRIVSEHFLAQVSAA 516
+ELP+T +GK+ +R + + + A
Sbjct: 475 DELPRTPTGKLYKRRLRDRYWEGRQRA 501
|
Length = 502 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-69
Identities = 148/493 (30%), Positives = 226/493 (45%), Gaps = 52/493 (10%)
Query: 20 KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
A+ + G+ L+ S +L A + VA + VA+ T+ V+ + + A
Sbjct: 16 ADAVRIGGRV-LSRS---DLAGAATA--VAERVAGARRVAVLATPTLATVLAVVGALIAG 69
Query: 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
P+ E L+DS ++ L PA + A
Sbjct: 70 VPVVPVPPDSGVAERRHILADSGAQAWLGPAPDDPAG----------------------- 106
Query: 140 TLSLAHSESDTNAISKLTN---DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
L H +A S DP AL ++TSGTT PKGV L++ +AA + +
Sbjct: 107 ---LPHVPVRLHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEA 163
Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
++ T D V LPLFHVHG++ G+L G GR + + Q + T Y
Sbjct: 164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV--HTGRPTPEAYAQAL-SEGGTLY 220
Query: 257 TAVPTI-HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315
VPT+ +I D A+ R + S SA+L + RL G +E Y MTE
Sbjct: 221 FGVPTVWSRIAADPEAAR---ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTE 277
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKG 372
L++ + DG +PG VG P+ G E ++DE G VP +G GE+ +RGP + G
Sbjct: 278 T--LITLSTRA-DGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG 334
Query: 373 YKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIK-ELINRGGEKISPIEVDAVLL 430
Y N P+A +AF GWF TGD+ D DG +VGR +LI GG +I E++ LL
Sbjct: 335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL 394
Query: 431 SHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITN 490
HP + +A GVPDD G+ I ++ + + +E++ F + ++ K P+ V +
Sbjct: 395 GHPGVREAAVVGVPDDDLGQRIVAYVVGADD--VAADELIDFVAQQLSVHKRPREVRFVD 452
Query: 491 ELPKTASGKIQRR 503
LP+ A GK+ ++
Sbjct: 453 ALPRNAMGKVLKK 465
|
Length = 471 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-69
Identities = 140/484 (28%), Positives = 228/484 (47%), Gaps = 26/484 (5%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY+ + LV R A+ L G G+ +A+ N+V V + A R A PLN +
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
E + L D+E +LLL G+ A A + D + + + A +DT
Sbjct: 84 SELDALLQDAEPRLLL----GDDAVAAG---------RTDVEDLAAFIASADALEPADTP 130
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
+I P V+L L TSGT+ +PKGV L++ NL + N + ++ S + P+
Sbjct: 131 SI-----PPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPM 185
Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
FH+ G++ + A G ++ + + T Y VP + Q +
Sbjct: 186 FHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG 245
Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL--MSSNPLPEDG 329
+ + A IL L++ G P+++ + M+EA + MS +
Sbjct: 246 FDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRA 303
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-G 387
K G+ G P + ++D+ G G GE+ +RGPN++ GY P+A AF G
Sbjct: 304 --KAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
WF TGDI D+DG+ +V R K++ GGE + P E++AVL HP I + G+ D +
Sbjct: 362 WFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQ 421
Query: 448 YGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
+GE AI+P +G+ +D E + +A +KVPK + + + LP+TASGK+Q+ + +
Sbjct: 422 WGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRD 481
Query: 508 HFLA 511
A
Sbjct: 482 ALAA 485
|
Length = 488 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 2e-69
Identities = 158/499 (31%), Positives = 230/499 (46%), Gaps = 27/499 (5%)
Query: 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
R L V G TY+ AA L AAG+ GD VAL N +EF+ +FL A
Sbjct: 37 RPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGA 96
Query: 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT 140
A P+N A + E L +S ++LL+ A AA AA ++ LLDA + ++
Sbjct: 97 IAVPINTALRGPQLEHILRNSGARLLVVEAAL-LAALEAADPGDLPLPAVWLLDAPASVS 155
Query: 141 LSLAHSESD----TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
+ S + P D A L+TSGTT KGV N
Sbjct: 156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAED 215
Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
++ D LPLFH + L + AGA L RFSAS FW + ++ AT
Sbjct: 216 LEIGADDVLYTTLPLFHTNA-LNAFFQALLAGATYVLEP--RFSASGFWPAVRRHGATVT 272
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF----GAPVLEAYA 312
+ + I+L ++P + +R +L P + + L AF G +L+ Y
Sbjct: 273 YLLGAMVSILL----SQPARESDRAHRVR---VALGPGVPAALHAAFRERFGVDLLDGYG 325
Query: 313 MTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--- 368
TE +++ +PGS+GR G E ++DE G GE+ +R
Sbjct: 326 STETNFVIAV-THGSQ---RPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFA 381
Query: 369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAV 428
GY PE A+ WFHTGD D+DG+ V RIK+ I R GE IS EV+ V
Sbjct: 382 FATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQV 441
Query: 429 LLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFI 488
LLSHP +A A F VP + +E+ A++ R+G+ ++ ++R C+ +A F VP+ V
Sbjct: 442 LLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEF 501
Query: 489 TNELPKTASGKIQRRIVSE 507
LPKT +GK+Q+ ++ E
Sbjct: 502 VAALPKTENGKVQKFVLRE 520
|
Length = 542 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 3e-69
Identities = 154/501 (30%), Positives = 236/501 (47%), Gaps = 29/501 (5%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
T+ + + V A L G+ GD V + N EFV LA A A P+N
Sbjct: 42 TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRL 101
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL---DADSELTLSLAHS 146
TP E F +SD + +++T A A A A + +I +T++ + + L
Sbjct: 102 TPPEIAFLVSDCGAHVVVTEA---ALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDL 158
Query: 147 ESDTNAISKLTNDPSDV-ALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDS 204
++ + P+D AL ++TSGTT RPKG LT NL +++ +++ SD
Sbjct: 159 LAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDV 218
Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
+ +PLFH+ G + +L GA + G F + T VP Q
Sbjct: 219 GFVGVPLFHIAG-IGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQ 277
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSN 323
V A+P + LR + +A + +L ++ F A +L A+ TE MS
Sbjct: 278 AVCAEQQARPRDL--ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTE----MS-- 329
Query: 324 P-----LPEDGPHKPGSVGRPVGQEIA-ILDEI--GVPQEGGAKGEVCIRGPNVTKGYKN 375
P L ED K GSVG+ + A ++DE VP G GE+ R P + GY N
Sbjct: 330 PVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPV--GEVGEIVYRAPTLMSGYWN 387
Query: 376 NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI 435
NPEA AF GWFH+GD+ D +GY+ +V R K++I GGE I EV+ VL SHPDI
Sbjct: 388 NPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDI 447
Query: 436 AQAVAFGVPDDKYGE-EINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPK 494
+ G D+K+GE + A + + + + E++ F +A +K PK + I + LP+
Sbjct: 448 VEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPR 507
Query: 495 TASGKIQRRIVSEHFLAQVSA 515
+GK+ + + E + A V+
Sbjct: 508 NPAGKVLKTELRERYGACVNV 528
|
Length = 542 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 1e-66
Identities = 163/566 (28%), Positives = 222/566 (39%), Gaps = 107/566 (18%)
Query: 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
+ LTY+ + A+RL A G GD V L P ++FV F + A A
Sbjct: 14 LFDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGA 72
Query: 81 TAAPLNAAYTPDEFEFY-------LSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL 133
A P A P + L+D+ ++ +LT + AA +AA +
Sbjct: 73 IAVP---APPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAA 129
Query: 134 DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
D + L DP D+A +TSG+T PKGV +T NL A++ I
Sbjct: 130 DDLAAL---------AAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 194 KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KY 251
+ L D V LPL+H G++ GLL AG V L + F W + I +Y
Sbjct: 181 ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRY 240
Query: 252 NATWYTAVPT-IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GA-PV- 307
AT + P + + + R + E LA + LS AF GA PV
Sbjct: 241 RATV-SGAPNFAYDLCVRR--VRDE--------------QLAGLDLSSWRVAFNGAEPVR 283
Query: 308 ---LEA------------------YAMTEATHLMSSNP--------------LPEDGPHK 332
LE Y + EAT +S P L G
Sbjct: 284 ADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAV 343
Query: 333 PG----------SVGRPV-GQEIAILDEIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
S GRP+ G E+ I+D P G GE+ +RGP+V GY N PEA
Sbjct: 344 AAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEAT 403
Query: 381 KSAFLF-------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISP--IEVDAVLLS 431
F GW TGD+G+ DG L++ GR+K+LI G P IE V +
Sbjct: 404 AETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIE-ATVERA 461
Query: 432 HPDIAQAVAFGVPDDKYGEE--INCAIIPREGSNIDEEEVLRFCKKNVA-AFKVPKRVFI 488
HP + A D GEE + A + R G D + + VA V +
Sbjct: 462 HPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVAPADVV 521
Query: 489 ---TNELPKTASGKIQRRIVSEHFLA 511
LPKT+SGKIQRR E +LA
Sbjct: 522 LVRPGTLPKTSSGKIQRRACRELYLA 547
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 1e-66
Identities = 156/600 (26%), Positives = 240/600 (40%), Gaps = 118/600 (19%)
Query: 12 QVIDQFSSKRALS--VSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
+ + AL G + +TY ++E V AS L++ GI AGD VA+ N E+
Sbjct: 24 ERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEW 83
Query: 69 VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT--PAEGNAAA--QAAASKLN 124
I LA++ A + P+ + TP++ + L++SESK++ + K+
Sbjct: 84 AIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVV 143
Query: 125 ISHATATLLD-------------ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSG 171
L+ D ++L L S I+ P D+A ++TSG
Sbjct: 144 DLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPP--KPDDLATIIYTSG 201
Query: 172 TTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV-LPLFHVHGMLAGLLSSFAAGAA 230
TT PKGV LT NL A V+ I V V+ LPL H+ + G
Sbjct: 202 TTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVT 261
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVP--------TIHQIV---------------- 266
V T +D+ + T VP I + V
Sbjct: 262 VLFK----EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317
Query: 267 ---------------LDRHVAKPEPVYPKLR--------FIRSCSASLAPVILSRLEEAF 303
L + V+ K+R + S A L+P +L +
Sbjct: 318 VAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELL-HFFRSL 376
Query: 304 GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEV 362
G P+LE Y +TE + ++S NP P+ G+VG+P+ G E+ I D GE+
Sbjct: 377 GIPILEGYGLTETSAVVSVNP-PDRF--VLGTVGKPLPGIEVKIAD----------DGEI 423
Query: 363 CIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGEKI 420
+RGPNV KGY NPEA AF GWF TGD+G D DGYL + GR KELI G+ I
Sbjct: 424 LVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNI 483
Query: 421 SPIEVDAVLLSHPDIAQAVAFG----------VPD----DKYGEEINCAIIPREGSNIDE 466
+P +++ L P I Q G VPD +K+ E +N I +
Sbjct: 484 APEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASREELARD 543
Query: 467 EEVL-------------RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513
++L F + + F + + F T + K++R ++ + + ++
Sbjct: 544 PKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI 603
|
Length = 613 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 2e-66
Identities = 147/527 (27%), Positives = 226/527 (42%), Gaps = 51/527 (9%)
Query: 9 LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEF 68
LL + AL + LTY+ + E V AS L G+ G+ VA+ +E
Sbjct: 5 LLEDAAARLPDATALVHHDR-TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63
Query: 69 VIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ-AAASKLNISH 127
V A P+N ++ L+D +LL+T +E A ++
Sbjct: 64 VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRT 123
Query: 128 ------ATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
E S + +A SD+A L+TSG+T RPKGV L
Sbjct: 124 LIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVL 183
Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL-----PAA 236
+ NL A ++ + + D + VLPL +G L ++F GA V L P
Sbjct: 184 SHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG-FNQLTTAFYVGATVVLHDYLLP-- 240
Query: 237 GRFSASTFWQDMI----KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292
+D++ K+ T AVP + L + + PE P LR++ + ++
Sbjct: 241 ---------RDVLKALEKHGITGLAAVPPL-WAQLAQ-LDWPESAAPSLRYLTNSGGAMP 289
Query: 293 PVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI 350
LSRL A + Y +TEA S+ PE+ +P S+G+ + E+ +L E
Sbjct: 290 RATLSRLRSFLPNARLFLMYGLTEA--FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED 347
Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--------------LFGWFHTGDIGY 396
G G +GE+ RG V GY N+PE F L W +GD
Sbjct: 348 GSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR 405
Query: 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAI 456
D +G+L+ VGR E+I G ++SP EV+ V + +A+AVAFGVPD G+ I +
Sbjct: 406 RDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVV 465
Query: 457 IPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
P G +D +L C+ + + VP + + LP+ A+GKI R+
Sbjct: 466 TPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRK 512
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 2e-66
Identities = 152/522 (29%), Positives = 230/522 (44%), Gaps = 30/522 (5%)
Query: 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
G T LL + ++ + AL V G LTY ++ + + R A G+ GD VAL
Sbjct: 10 SGATYGHLLVSALKRYPDRPAL-VLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALL 68
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA----EGNAAAQ 117
N E ++ A A L+ + D+ + L D+ L+ E A
Sbjct: 69 SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL 128
Query: 118 AAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLT--NDPSDVALFLHTSGTTSR 175
A L L + L + + + L P D+A +T GTT +
Sbjct: 129 ARVPSL-----KHVLTLGPVPDGVDLL-AAAAKFGPAPLVAAALPPDIAGLAYTGGTTGK 182
Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
PKGV T ++A + ++ ++ PL H G L + G V + A
Sbjct: 183 PKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLA 240
Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
F + + + + T VPT+ +LD H L + ++ ++PV
Sbjct: 241 K--FDPAEVLRAIEEQRITATFLVPTMIYALLD-HPDLRTRDLSSLETVYYGASPMSPV- 296
Query: 296 LSRLEEA---FGAPVLEAYAMTEA----THLMSSNPLPEDGPHKPGSVGRPV-GQEIAIL 347
RL EA FG + Y TEA T+L + P+D P + S GRP G +A+L
Sbjct: 297 --RLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDD-PKRLTSCGRPTPGLRVALL 353
Query: 348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407
DE G G GE+C+RGP V GY N PE AF GW HTGD+ D DG+ ++V
Sbjct: 354 DEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD 413
Query: 408 RIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE 467
R K++I GG + P EV+ VL HP +AQ GVPD+K+GE + ++ R G+ +D
Sbjct: 414 RKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAA 473
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
E+ K+ + PK+V + LP TA GK ++ + +
Sbjct: 474 ELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARY 515
|
Length = 524 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 2e-66
Identities = 150/524 (28%), Positives = 231/524 (44%), Gaps = 59/524 (11%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
+SG ++ + + RAA L A G+ GD VAL N F A +R A A P
Sbjct: 6 ISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP 65
Query: 85 LNAAYTPDEFEFYLSDSESKLLL-----------------------TPAEGNAAAQAAAS 121
+N + P+E + L DS +++L+ TP E AAA
Sbjct: 66 VNWHFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPE-----IAAAY 120
Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV-- 179
+++ + T D E L+ D + + + ++TSGTT PKGV
Sbjct: 121 RISPALLTPPAGAIDWEGWLA-QQEPYDGPPVPQPQS-------MIYTSGTTGHPKGVRR 172
Query: 180 -PLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238
T AA+ +Y L ++ PL+H GL + G V P R
Sbjct: 173 AAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP---R 229
Query: 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAP 293
F Q + ++ T VPT+ +L PE V K LR + +A
Sbjct: 230 FDPEELLQLIERHRITHMHMVPTMFIRLLKL----PEEVRAKYDVSSLRHVIHAAAPCPA 285
Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV 352
+ + E +G + E Y TE+ + + ED PG+VG+ G E+ +DE G
Sbjct: 286 DVKRAMIEWWGPVIYEYYGSTESGAVTFATS--EDALSHPGTVGKAAPGAELRFVDEDGR 343
Query: 353 PQEGGAKGEVCIR---GPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI 409
P G GE+ R P+ T Y N PE G+ +GD+GY D+DGYL L R
Sbjct: 344 PLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRK 401
Query: 410 KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEV 469
++++ GG I P E++AVL + P + FG+PD ++GE + + P+ G+ +DE ++
Sbjct: 402 RDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADI 461
Query: 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513
K +A +KVPK + I ELP+ SGKI +R + + + A
Sbjct: 462 RAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANA 505
|
Length = 509 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 3e-66
Identities = 137/480 (28%), Positives = 214/480 (44%), Gaps = 60/480 (12%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
T+ ++ + R A+ L G+ GD V + P + E I LAV + A + PL+ + P
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
D E L DS +++L+T
Sbjct: 68 DAVEHRLRDSGARVLVT------------------------------------------- 84
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
+ D A+ ++TSGTT PKG L + ++ ++L V P
Sbjct: 85 ------DGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPA 138
Query: 212 --FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
+ G+L LL + G V RF + M +Y T PT ++ + R
Sbjct: 139 DWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKM-MRR 197
Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
++ +LR + S SL +L + G V E Y TEA ++ + G
Sbjct: 198 VGSERARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAAL--G 255
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN--VTKGYKNNPEANKSAFLF 386
P +PGS+G+PV G E+A++D+ G P G GE+ ++ P+ + GY NNPEA + F
Sbjct: 256 PARPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAG 315
Query: 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDD 446
W TGD+G D+DGYL GR ++I G +I P E++ LL HP + +A GVPD
Sbjct: 316 DWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDP 375
Query: 447 KYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ GE + ++ EG +E E+ K +AA + P+ + +ELP T +GKI+RR
Sbjct: 376 ERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRR 435
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 5e-65
Identities = 128/480 (26%), Positives = 202/480 (42%), Gaps = 63/480 (13%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
T++ + E +RAA+ L G+ GD VA+ P E + L I+ A P P
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTN 151
+ + L + ++ ++T
Sbjct: 62 KDIRYRLERAGARAIVT------------------------------------------- 78
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPL 211
D AL TSGTT PK V T + + L D +
Sbjct: 79 -------SADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADP 131
Query: 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271
G + L + + GAAV + RF A + + +Y T + A PT ++++L + +
Sbjct: 132 GWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDL 191
Query: 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331
+ + + LR + S L P ++ A G P+ + Y TE L+++ P
Sbjct: 192 SSYD--FSHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFP---GMEV 246
Query: 332 KPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI----RGPNVTKGYKNNPEANKSAFLF 386
KPGS+GRP G +AI+D+ G G +G++ + R P + +GY +PE ++
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRG 306
Query: 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDD 446
W+ TGD D DGY VGR ++I G +I P EV++ L+ HP +A+A G PD
Sbjct: 307 DWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDP 366
Query: 447 KYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
GE + ++ G EE E+ KK A +K P+ + ELPKT SGKI+R
Sbjct: 367 VRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRV 426
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 3e-64
Identities = 149/536 (27%), Positives = 234/536 (43%), Gaps = 56/536 (10%)
Query: 9 LLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA------GINAGDVVALTF 62
+L Q +F+ K A S GK LTY +++L S AA + GD +A+
Sbjct: 29 VLKQSCQRFADKPAFSNLGK-TLTYGELYKL-----SGAFAAWLQQHTDLKPGDRIAVQL 82
Query: 63 PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
PN +++ + +RA N YT E E +DS +K L+ A A+ K
Sbjct: 83 PNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK 142
Query: 123 LNISHATAT-LLDADSEL-----------------------------TLSLAHSESDTNA 152
+ H T + D L L+ + T A
Sbjct: 143 TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEA 202
Query: 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTVIV-L 209
DVA+ +T GTT KG LT NL A++ +++ L E +I L
Sbjct: 203 ----NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPL 258
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDR 269
PL+H++ ++ G L + R +++ K+ + + + T+ + L
Sbjct: 259 PLYHIYAFTFHCMAMMLIGNHNILISNPR-DLPAMVKELGKWKFSGFVGLNTLF-VALCN 316
Query: 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG 329
+ A + + L+ S +L R +E G + E Y MTE + ++S NP
Sbjct: 317 NEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPS---Q 373
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-G 387
+ G++G PV ++D+ G G GE+C++GP V KGY PEA G
Sbjct: 374 AIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDG 433
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
W TGDI DGY+ +V R K++I G + P E++ VL + P + Q A GVPD+K
Sbjct: 434 WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEK 493
Query: 448 YGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
GE I ++ + G + +E+V+ + N+ +KVPK V +ELP T GKI RR
Sbjct: 494 SGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRR 549
|
Length = 562 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 3e-63
Identities = 141/492 (28%), Positives = 227/492 (46%), Gaps = 32/492 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y + V+R A L G+ GDVV+ PN EF ++LA R A PL +
Sbjct: 54 FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113
Query: 91 PDEFEFYLSDSESKLLLTPA---EGNAAAQAAASKLNISH-ATATLLDADS----ELTLS 142
E F L+ ++SK+ + P+ + AA A + + ++D D + L
Sbjct: 114 ERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 143 LAHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
+ +A + L P DV ++TSGTT PKGV T N L +++ +L
Sbjct: 174 TPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL 233
Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ-----DMIKYNAT 254
D ++ P+ H G + GL+ A L W ++I+
Sbjct: 234 GGGDVILMASPMAHQTGFMYGLMMPLILNATAVL--------QDIWNPARAAELIRETGV 285
Query: 255 WYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
+T T L R V + PV P L A + +++ R E GA ++ A+ M
Sbjct: 286 TFTMASTPFLTDLCRAVKESGAPV-PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGM 344
Query: 314 TEATHLMSSNPLPEDGPHKPG-SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371
TE + + P+D K + GRP+ G E+ ++D G G G + +RG +
Sbjct: 345 TENGAVTVT--EPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFG 402
Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
GY P N S GWF TGD+ + D++GY+ + GR K++I RGGE I +E++ +L
Sbjct: 403 GYLKRPHLN-STDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ 461
Query: 432 HPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK-KNVAAFKVPKRVFITN 490
HP +AQ PD++ GE ++P+ G +D ++ F K + VA +P+R+ + +
Sbjct: 462 HPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVD 521
Query: 491 ELPKTASGKIQR 502
LP T +GKIQ+
Sbjct: 522 ALPATPAGKIQK 533
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 5e-63
Identities = 136/481 (28%), Positives = 206/481 (42%), Gaps = 55/481 (11%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y+ + E R A+ L G+ GD VA P T E V+ LA R A PL A+
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P E+ L S +K+++T NAA +
Sbjct: 61 PKAIEYRLGHSGAKVVVT----NAANRG-------------------------------- 84
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
KL +D ++TSGTT PKGVP+ N LAA + ++ L + D +
Sbjct: 85 ----KLDDDL---FAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIAD 137
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+G+ + A G G F+A + + + T + PT +++++
Sbjct: 138 PGWAYGLYYAITGPLAMGITTVFLEGG-FTAENTYDVLERLGVTNFAGSPTAYRMLMAAG 196
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDG- 329
+ KLR S L P ++ + G + + Y TE M
Sbjct: 197 ADAAARIKLKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTE--TGMPVGNHHALAH 254
Query: 330 PHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIR----GPNVTKGYKNNPEANKSAF 384
+ GS+G P+ G IA+LD+ G P G G++ I GY ++PE
Sbjct: 255 EVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELI 314
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
W+ TGD+ D DGY +GR ++I G +I P +V++ LL HP +A+A GVP
Sbjct: 315 AGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVP 374
Query: 445 DDKYGEEINCAIIPREG---SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQ 501
D GE + ++ +EG S+ EE+ F KK ++A P+ V LPKT SGKIQ
Sbjct: 375 DPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSGKIQ 434
Query: 502 R 502
R
Sbjct: 435 R 435
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 8e-62
Identities = 149/516 (28%), Positives = 237/516 (45%), Gaps = 27/516 (5%)
Query: 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
TL +L ++ + A+ + G+ L+Y+ + + +R A+ L GI GD V +
Sbjct: 27 DRTLTDILTDHAARYPDRIAV-IDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQL 85
Query: 63 PNTVEFVIMFLAVIRARATAAPLNA--AYTPDEFEFYLSDSESKLLLTP-AEGNAAAQAA 119
PN EF I F A++R AP+ A ++ E + S E+ LL+ +
Sbjct: 86 PNVAEFYITFFALLRL--GVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPF 143
Query: 120 ASKLNISHATATLL----DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
A +L H T + +A+ L A D +VA F + GTT
Sbjct: 144 ARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGT 203
Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234
PK +P T N+ SV + + + LP H + + G L F AG V L
Sbjct: 204 PKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVL- 262
Query: 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-LRFIRSCSASLAP 293
A S + + ++ T VP + + L A+ E LR ++ A L+
Sbjct: 263 -APDPSPELCFPLIERHGVTVTALVPPLASLWLQ--AAEWERADLSSLRLLQVGGARLSA 319
Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKP--GSVGRPVG--QEIAILDE 349
+ R+ G + + + M E L++ L D P + + GRP+ E+ ++D
Sbjct: 320 TLARRVPAVLGCQLQQVFGMAEG--LVNYTRL--DDPPEIIIHTQGRPLSPDDEVRVVDA 375
Query: 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR 408
G P G GE+ RGP +GY PE N AF G++ +GD+ D DGYL + GR
Sbjct: 376 DGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGR 435
Query: 409 IKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEE 468
+K+ INRGGEKI+ EV+ +LL HP + A +PD+ GE+ I+ +E + +
Sbjct: 436 VKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQ 494
Query: 469 VLRFC-KKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ RF ++ +AAFK+P R+ + LP TA GKI ++
Sbjct: 495 LRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKK 530
|
Length = 542 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 208 bits (533), Expect = 8e-62
Identities = 136/510 (26%), Positives = 211/510 (41%), Gaps = 89/510 (17%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
+ + AL V G LTY+ + E +R A+RL+A G AGD VA+ + + LA
Sbjct: 3 KHPDRPALVVGGD-TLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
++A A PL+ + + L + L+
Sbjct: 62 LKAGAAYVPLDPSQPAERIAKILEAAGPAALVA--------------------------- 94
Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS 195
DP D+A L TSG+T +PKGV ++ NLA+ + +
Sbjct: 95 -----------------------DPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVE 131
Query: 196 VYKLTESDSTVIVLPLFH----VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK- 250
+ LTE D F V + L A+GA + + + + + +K
Sbjct: 132 DFDLTEGD-VFSNQAPFSFDLSVFDLFPAL----ASGATLYVIPKEQIADPLALFEFLKE 186
Query: 251 YNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLE 309
+ T + +VP+ ++L PE P LR C L + L F A ++
Sbjct: 187 HGLTVWVSVPSFASLLLLSRELNPE-SLPSLRTFLFCGEVLPKKLAKALRRRFPNARIIN 245
Query: 310 AYAMTEAT-----------HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGG 357
Y TEAT L + PLP +G P G ILDE G P G
Sbjct: 246 LYGPTEATVAVTAYEVTPEPLSRNEPLP---------IGYPKPGLRALILDEDGRPVPPG 296
Query: 358 AKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELI 413
+GE+ I GP V+ GY NNPE AF W+ TGD+ Y + DG L +GR I
Sbjct: 297 EEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQI 356
Query: 414 NRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473
G +I E++A L + P + +AV VP + + ++ +EG+ +D + + +
Sbjct: 357 KLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA-LDTKALKKEL 415
Query: 474 KKNVAAFKVPKRVFITNELPKTASGKIQRR 503
KK + + +P+R + LP A+GKI R+
Sbjct: 416 KKRLPPYMIPRRFVYLDSLPLNANGKIDRK 445
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 8e-61
Identities = 142/489 (29%), Positives = 216/489 (44%), Gaps = 60/489 (12%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y + EL R A+ L + G+ G+ V P + E + L ++ A PL +A+
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P+ L E+K+L+T T L
Sbjct: 61 PEPIRDRLELGEAKVLIT--------------------TPELY----------------- 83
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
DP D AL TSGTT +PKGV + A + + V L D
Sbjct: 84 -----ERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTAD 138
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVLDR 269
V G G+++ G + + G F A ++ + + T WYTA PT ++ L R
Sbjct: 139 PGWVTGTSYGIIAPLLNGVTLVV-DEGEFDAERWYGILEEEKVTVWYTA-PTALRM-LMR 195
Query: 270 HVAKPEPVY--PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
+ Y LR I S L P ++ E+ G P+ + + TE +M +N P
Sbjct: 196 AGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIAN-YP- 253
Query: 328 DGPHKPGSVGRPV-GQEIAIL----DEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEAN 380
P KPGS+GRP+ G E A++ D + G GE+ ++ P++ +GY N E
Sbjct: 254 GIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERY 313
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
S+F+ GW+ TGD+ Y D DGY VGR ++I G + P EV++ L+ HP +A+A
Sbjct: 314 ASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGV 373
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
G PD GE + + R G EE E+L F ++ + A P+ + + LPKT S
Sbjct: 374 IGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRS 433
Query: 498 GKIQRRIVS 506
GKI RR++
Sbjct: 434 GKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 8e-61
Identities = 150/518 (28%), Positives = 227/518 (43%), Gaps = 65/518 (12%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
+ G T++ + R AS L GI GD VA+ PN V V A A
Sbjct: 38 IHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNT 97
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD-------- 136
LN F L E+K+L+ E A+ A + L ++D D
Sbjct: 98 LNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP--GPKPLVIDVDDPEYPGGR 155
Query: 137 --SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA--SVSN 192
L + D + L D D +TSGTT PKGV + + A ++SN
Sbjct: 156 FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGV-VYHHRGAYLNALSN 214
Query: 193 I-------KSVYKLTESDSTVIVLPLFHVHG------MLAGLLSSFAAGAAVTLPAAGRF 239
I VY T LP+FH +G + A AG V L +
Sbjct: 215 ILAWGMPKHPVYLWT--------LPMFHCNGWCFPWTVAA------RAGTNVCLR---KV 257
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL 299
+ + ++ T Y P + +++ + + + A+ +++++
Sbjct: 258 DPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAM-VAGAAPPAAVIAKM 316
Query: 300 EEAFGAPVLEAYAMTE--------ATHLMSSNPLPEDGPHKPGS---VGRPVGQEIAILD 348
EE G + Y +TE A + LP D + + V P+ + + +LD
Sbjct: 317 EEI-GFDLTHVYGLTETYGPATVCAWQ-PEWDALPLDERAQLKARQGVRYPLQEGVTVLD 374
Query: 349 -EIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHL 405
+ VP +G GE+ RG V KGY NP+A + AF GWFHTGD+ DGY+ +
Sbjct: 375 PDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKI 434
Query: 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP-REGSNI 464
R K++I GGE IS IEV+ VL HP + A PD K+G E+ CA + ++G++
Sbjct: 435 KDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWG-EVPCAFVELKDGASA 493
Query: 465 DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
EEE++ C++++A FKVPK V ELPKT++GKIQ+
Sbjct: 494 TEEEIIAHCREHLAGFKVPKAVVFG-ELPKTSTGKIQK 530
|
Length = 545 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 9e-61
Identities = 157/539 (29%), Positives = 241/539 (44%), Gaps = 52/539 (9%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
+L LL + Q++ + A GK +TY + EL A+ L + G+ G VA+ PN
Sbjct: 24 SLADLLEESFRQYADRPAFICMGK-AITYGELDELSRALAAWLQSRGLAKGARVAIMMPN 82
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
+++ + AV+RA +N YTP E E L DS ++ ++ Q +K
Sbjct: 83 VLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTA 142
Query: 125 ISHATAT----LLDADSEL-------------TLSLAHSESDTNAIS--------KLTND 159
+ H LL + SL +A++ +
Sbjct: 143 VKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLG 202
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-------SVYKLTESDSTVIVLPLF 212
P DVA +T GTT KG L N+ A+V ++ + + V LPL+
Sbjct: 203 PDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLY 262
Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA 272
H+ + L G L R F +++ KY + AV T++ +L+
Sbjct: 263 HIFALTVCGLLGMRTGGRNILIPNPRDIPG-FIKELKKYQVHIFPAVNTLYNALLN---- 317
Query: 273 KPEPVYPKLRF---IRSCSASLA---PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP 326
P + KL F I + +A PV R E G P+ E Y ++E + + + NP+
Sbjct: 318 --NPDFDKLDFSKLIVANGGGMAVQRPVA-ERWLEMTGCPITEGYGLSETSPVATCNPV- 373
Query: 327 EDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNP-EANKSAF 384
D G++G P+ E++I D+ G G GE+CIRGP V GY N P E K
Sbjct: 374 -DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT 432
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
G+F TGD+G D GY +V R K++I G + P E++ V+ SHP + + A GVP
Sbjct: 433 ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVP 492
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
D+ GE + + ++ + EE+V FCK+ + +K PK V ELPKT GKI RR
Sbjct: 493 DEHSGEAVK-LFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRR 550
|
Length = 557 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 2e-60
Identities = 155/506 (30%), Positives = 239/506 (47%), Gaps = 25/506 (4%)
Query: 26 SGKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
S F ++YS + LV+ A+ L G+ GDVV L PN+V F ++FLAV+
Sbjct: 62 STGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT 121
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
+N + + E + + D L T E + E
Sbjct: 122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYE 181
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI----KSVYKLT 200
+ D + + K DVA +++SGTT KGV LT NL A V S Y+
Sbjct: 182 LIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYP 241
Query: 201 ESDSTVI-VLPLFHVHGM---LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
SD+ + LP+FH++G+ + GLLS G+ + + RF AS + + ++ T +
Sbjct: 242 GSDNVYLAALPMFHIYGLSLFVVGLLS---LGSTIVV--MRRFDASDMVKVIDRFKVTHF 296
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA----PVLEAYA 312
VP I + AK L+ ++ S AP+ +++ ++ Y
Sbjct: 297 PVVPPILMALT--KKAKGVCGEV-LKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYG 353
Query: 313 MTEATHLMSSNPLPEDGPHKPGSVG--RPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVT 370
MTE+T + + + K SVG P Q + G G GE+ I+GP V
Sbjct: 354 MTEST-AVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVM 412
Query: 371 KGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
KGY NNP+A +S GW TGDI YFD DGYL++V R+KE+I G +I+P +++AVL
Sbjct: 413 KGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVL 472
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
+SHP+I A VPD + GE ++ R+GS + +E V+ + K VA +K ++V
Sbjct: 473 ISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFV 532
Query: 490 NELPKTASGKIQRRIVSEHFLAQVSA 515
+PK+ +GKI RR + VS+
Sbjct: 533 QSIPKSPAGKILRRELKRSLTNSVSS 558
|
Length = 560 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 4e-60
Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 46/509 (9%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+TY+ + EL +R A+ L G+ AGD VA+ PN +F I+F +++ A P++ +
Sbjct: 58 VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLF 117
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT----LLDADSELTLS--- 142
E + L+D+ +++LL + + ++ ++ H T +L A+ L L
Sbjct: 118 REHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSL 177
Query: 143 -------------LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL--- 186
L + T + +A +T GTT PKG TQ ++
Sbjct: 178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ 246
AA+ + V E + LP F + G GLL +GA + L A R+ A F
Sbjct: 238 AAAAYAVAVV--GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA--RWDAVAFMA 293
Query: 247 DMIKYNATWYTAVPTIHQIV-LDRHVAKPEPVYPKLRFIRSCS--ASLAPVILSRLEEAF 303
+ +Y T V + V L H E LR +R S L P R
Sbjct: 294 AVERYRVT--RTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALT 351
Query: 304 GAPVLEA-YAMTEATHLMSSNPLP---EDGPH----KPGSVGRPV-GQEIAILD-EIGVP 353
G+ + EA + MTE TH + + +D +P VG PV G E I D E G
Sbjct: 352 GSVLAEAAWGMTE-TH--TCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL 408
Query: 354 QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
GA+GE+ +R P++ KGY N PEA A GW HTGDIG D G+LH +GR KE++
Sbjct: 409 LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEML 468
Query: 414 NRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473
G + P EV+A+L HP + + G PD G+ + + G+++ + +C
Sbjct: 469 KVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWC 528
Query: 474 KKNVAAFKVPKRVFITNELPKTASGKIQR 502
++N+A +KVP+ + I + LP TA+GK+++
Sbjct: 529 RENMAVYKVPE-IRIVDALPMTATGKVRK 556
|
Length = 567 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-59
Identities = 141/490 (28%), Positives = 222/490 (45%), Gaps = 38/490 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY+ + E A L+A G+ AGD VA+ N FV+ A + A LN ++
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSES-- 148
+ + K L+ E A L A D D + +
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLI 194
Query: 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV 208
++ + L P + + TSGTT PKG P + + A ++ + S ++T++
Sbjct: 195 AGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLP 254
Query: 209 LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
P+FH G L+ A G+ V L RF +D+ K+ AT VP + L
Sbjct: 255 APMFHATGWAHLTLA-MALGSTVVLRR--RFDPEATLEDIAKHKATALVVVPVM----LS 307
Query: 269 RHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVL-------EAYAMTEA 316
R + V K L+ I ++L+P + +R EAFG PVL E T A
Sbjct: 308 RILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIA 366
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
T PED PG+VGRP G + ILDE G G G + + +GY +
Sbjct: 367 T--------PEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTD 418
Query: 376 --NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
+ + G +GD+GYFD DG L + GR ++I GGE + P EV+ +L HP
Sbjct: 419 GRDKQIID-----GLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHP 473
Query: 434 DIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELP 493
D+ +A GV D+++G+ + ++ G+ +DE+ + + + N+A +KVP+ V +ELP
Sbjct: 474 DVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELP 533
Query: 494 KTASGKIQRR 503
+ +GK+ +R
Sbjct: 534 RNPTGKVLKR 543
|
Length = 549 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 4e-59
Identities = 130/489 (26%), Positives = 218/489 (44%), Gaps = 18/489 (3%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
+ G +Y + + + A+ L GI GD + PN EF I+F A+++ AP
Sbjct: 43 ICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKL--GVAP 100
Query: 85 LNA--AYTPDEFEFYLSDSESKLLLTPAEGNA-AAQAAASKLNISHAT-ATLLDADSELT 140
+ A ++ E Y S E L + + A +L T ++ A
Sbjct: 101 VLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNIIVAGQTGE 160
Query: 141 LSLAHSESDTNAISKLTN-DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
L K +VA F + G+T PK +P T N+ SV + L
Sbjct: 161 AELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL 220
Query: 200 TESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
T+ + LP H + + + G L F AG V L S + + + ++ T
Sbjct: 221 TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDP--SPTDCFPLIERHKVTVTAL 278
Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318
VP + + +K L+ ++ A + R+ FG + + + M E
Sbjct: 279 VPPAVALWMQ-AASKSRADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG-- 335
Query: 319 LMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
L++ L + + GRP+ E+ ++D+ G P G G + RGP +GY
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKA 395
Query: 377 PEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI 435
PE N +AF G+++TGD+ +GY+ +VGR K+ INRGGEKI+ E++ +LL+HP +
Sbjct: 396 PEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAV 455
Query: 436 AQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK-NVAAFKVPKRVFITNELPK 494
A +PD+ GE+ +CA I + ++ RF ++ +A +K+P RV + LP
Sbjct: 456 HDAALVSMPDELLGEK-SCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVEFVDSLPL 514
Query: 495 TASGKIQRR 503
TA GK+ ++
Sbjct: 515 TAVGKVDKK 523
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-58
Identities = 156/501 (31%), Positives = 226/501 (45%), Gaps = 47/501 (9%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
TY + EL + A+ L G+ GD V + P E L ++ A PL A+
Sbjct: 73 KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAF 132
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DADSEL---TLSLA- 144
+ L DSE+K+L+T + A L LL D E TL
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPA--LLERKPADDL--PSLKHVLLVGEDVEEGPGTLDFNA 188
Query: 145 --HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES 202
SD I D D A+ +TSG+T +PKGV N + K V L E
Sbjct: 189 LMEQASDEFDIEWT--DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHED 246
Query: 203 DSTVIVLPLFH-------VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNAT 254
D ++ V G G+ + + GA + GRFS W ++ Y T
Sbjct: 247 D-------VYWCTADPGWVTGTSYGIFAPWLNGAT-NVIDGGRFSP-ERWYRILEDYKVT 297
Query: 255 -WYTAVPTIHQIVLDRHVAKPEPV----YPKLRFIRSCSASLAPVILSRLEEAFGAPVLE 309
WYTA PT ++++ A + V LR I S L P ++ + FG P+ +
Sbjct: 298 VWYTA-PTAIRMLMG---AGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHD 353
Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG-- 366
+ MTE +M +N D KPGS+G+P+ G E AI+D+ G G + I+
Sbjct: 354 NWWMTETGGIMIANYPAMD--IKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGW 411
Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
P++ +G NNPE +S F W+ +GD Y D DGY GR+ ++I GE++ P EV+
Sbjct: 412 PSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVE 471
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVP 483
+ L+ HP +A+A G PD GE I + R G EE E+ F KK + A P
Sbjct: 472 SKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAP 531
Query: 484 KRVFITNELPKTASGKIQRRI 504
+ + ++LPKT SGKI RR+
Sbjct: 532 REIEFKDKLPKTRSGKIMRRV 552
|
Length = 570 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 3e-58
Identities = 153/524 (29%), Positives = 242/524 (46%), Gaps = 50/524 (9%)
Query: 31 LTYSRIHELVERAASRLVAA------GINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
+T+ + L ER SR AA G+ GD VAL PN +++ I ++RA
Sbjct: 49 MTFRK---LEER--SRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVN 103
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DADS--ELTL 141
+N YTP E E L+DS +K ++ + + K + H T + D S + TL
Sbjct: 104 VNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTL 163
Query: 142 ---------------SLAHSESDTNAISK----------LTNDPSDVALFLHTSGTTSRP 176
L + S +A+ K L + D+A +T GTT
Sbjct: 164 VNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPE--DLAFLQYTGGTTGVA 221
Query: 177 KGVPLTQNNLAASVSNIKSVYK--LTE-SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233
KG LT N+ A++ K+ Y L + V LPL+H+ + L G L
Sbjct: 222 KGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLL 281
Query: 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP 293
R F +++ KY T T V T+ +L+ + E + L+ ++
Sbjct: 282 ITNPR-DIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ-ELDFSSLKLSVGGGMAVQQ 339
Query: 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGV 352
+ R + G +LE Y +TE + L+S NP D + GS+G PV EI ++D+ G
Sbjct: 340 AVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSGSIGLPVPSTEIKLVDDDGN 397
Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412
G GE+ ++GP V GY PEA GW TGDI D +G+L +V R K++
Sbjct: 398 EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDM 457
Query: 413 INRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472
I G + P E++ V++ HP + + A GVP + GE + ++ ++ S + EEE++
Sbjct: 458 ILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS-LTEEELITH 516
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516
C++++ +KVPK V +ELPK+ GKI RR + + A+V
Sbjct: 517 CRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKVDNK 560
|
Length = 560 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 199 bits (506), Expect = 4e-57
Identities = 157/524 (29%), Positives = 237/524 (45%), Gaps = 34/524 (6%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
TL LL++ + + AL + +TY+ + + E AA+ L+ AG VAL N
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRDR-PITYTELEAMAETAAAALLRAGYGKDASVALYLGN 80
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT-------PAEGNAAAQ 117
T + I F ++A A L+ LSDS ++LL+T P +
Sbjct: 81 TPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK 140
Query: 118 AAASKLNI--------SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169
+L + + AD + + P DVAL +T
Sbjct: 141 GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYT 200
Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES------DSTVIVLPLFHVHGMLAGLLS 223
GTT PKG LT NL ++VS I V+ + + VLPLFH++ + LL
Sbjct: 201 GGTTGLPKGAMLTHGNLTSAVS-IYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLR 259
Query: 224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRF 283
S G ++L RF + ++D+ + AT + VPT+ I L + + L
Sbjct: 260 SLRRGDLISLHQ--RFDVAAVFRDIEEKRATVFPGVPTM-WIALANDPSLEKRDLSSLAT 316
Query: 284 IRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-G 341
I S A L PV ++ E G + + MTE + +P +GP KPGS+G + G
Sbjct: 317 IGSGGAPL-PVEVANFFERKTGLKLKSGWGMTETCSPGTGHPP--EGPDKPGSIGLMLPG 373
Query: 342 QEIAI--LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399
E+ + LD+ G GE+ IRGPNVT+GY N PE + AF+ F TGDIGY D+
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDT 433
Query: 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR 459
DGY LV R K++I GG + P ++ + HP + + + G+PD GE + R
Sbjct: 434 DGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLR 493
Query: 460 EGSNIDEEEVLR-FCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
G+ + LR F + ++P V +ELP+T GK+ R
Sbjct: 494 PGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSR 537
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 5e-56
Identities = 117/427 (27%), Positives = 175/427 (40%), Gaps = 36/427 (8%)
Query: 32 TYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TY + E R A L A G+ GD VA+ + E V+ LAV++A A PL+ AY
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ F L D+ ++LLLT A+ A I L D + S
Sbjct: 61 AERLAFILEDAGARLLLT-DSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSG- 118
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
P D+A ++TSG+T RPKGV +T +L ++ + Y L D +
Sbjct: 119 ---------PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFAS 169
Query: 211 L---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIV 266
L V + LL A V P + +I ++ T P+ +
Sbjct: 170 LSFDASVEEIFGALL---AGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPS----L 222
Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPL 325
L A P LR + +L P ++ R A ++ Y TE T ++ +
Sbjct: 223 LALLAAALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLV 282
Query: 326 PEDGPHKPGSV--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
D + V GRP+ + +LD+ P G GE+ I GP V +GY N PE
Sbjct: 283 DPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAE 342
Query: 383 AFLFGWF---------HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
F+ F TGD+ + DG L +GRI + + G +I E++A LL HP
Sbjct: 343 RFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHP 402
Query: 434 DIAQAVA 440
+ +AV
Sbjct: 403 GVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 8e-56
Identities = 155/527 (29%), Positives = 253/527 (48%), Gaps = 18/527 (3%)
Query: 2 EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
+ +TL + Q + ++ K A +V+GK +TY + R A L + G+ G VV
Sbjct: 26 DKLTLPDFVLQDAELYADKVAFVEAVTGK-AVTYGEVVRDTRRFAKALRSLGLRKGQVVV 84
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
+ PN E+ I+ L ++ A + N E + + +KL++T +
Sbjct: 85 VVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL 144
Query: 120 ASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV 179
+ + + + L A DT+ ++ +D+ +SGTT KGV
Sbjct: 145 GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGV 202
Query: 180 PLTQNNLAASV-SNIKSV-YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237
LT NL A++ S++ SV ++ T+ ++P FH++G+ ++ V
Sbjct: 203 MLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVV--VMS 260
Query: 238 RFSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
RF TF +I ++ VP I +V + V + + KL+ I + +A LAP +L
Sbjct: 261 RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELL 320
Query: 297 SRLEEAF-GAPVLEAYAMTEAT--HLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILD-EIG 351
+ E F G V EAY +TE + L +P G K SVG + E+ +D + G
Sbjct: 321 TAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTG 380
Query: 352 VPQEGGAKGEVCIRGPNVTKGYKNNPE-ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIK 410
GE+C+R V +GY NN E +++ GW HTGDIGY D DG + +V RIK
Sbjct: 381 RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIK 440
Query: 411 ELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE-EINCAIIPREGSNIDEEEV 469
ELI G +++P E++A+LL+HP + A +PD++ GE C +I + EE++
Sbjct: 441 ELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKE-SEEDI 499
Query: 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516
L F NVA +K + V + +PK+ SGKI RR++ E L+ A
Sbjct: 500 LNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSINKAN 546
|
Length = 546 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-55
Identities = 141/504 (27%), Positives = 220/504 (43%), Gaps = 39/504 (7%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
T+ + + +AA+ A GI GD V LT EF LA+ + A A P
Sbjct: 47 IFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHML 106
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAA--QAAASKLNISHATATLLDAD-------SELT 140
T + + + + K+++ E AA + + D +
Sbjct: 107 TAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEI 166
Query: 141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV------PLTQNNLAASVSNIK 194
+ + ND D+ L TSGTT PK V PL A N+K
Sbjct: 167 ENASPDFERPTGNDATCND--DILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQNVK 224
Query: 195 -SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNA 253
LT +D+ + L + AGAAV + +F + + KY
Sbjct: 225 EGGLHLTVADTG-------WGKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEKYGV 277
Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
T + A PTI++ ++ ++K + LR+ + L P + + +E G ++E +
Sbjct: 278 TTFCAPPTIYRFLIKEDLSKYD--LSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQ 335
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPN---- 368
TE T +++ P E KPGS+G+P G +I I+D G E G +GE+ IR +
Sbjct: 336 TETTLTIATFPWMEP---KPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPL 392
Query: 369 -VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
+ GY +PE + G++HTGD + D DGYL VGR +LI G +I P EV++
Sbjct: 393 GLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVES 452
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPK 484
L+ HP + + GVPD G+ + I+ +G EE E+ KK A +K P+
Sbjct: 453 ALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPR 512
Query: 485 RVFITNELPKTASGKIQRRIVSEH 508
+ +ELPKT SGKI+R + E
Sbjct: 513 IIEFVDELPKTISGKIRRVEIREK 536
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-55
Identities = 151/530 (28%), Positives = 240/530 (45%), Gaps = 52/530 (9%)
Query: 14 IDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMF 72
+ +F+ + A GK +TY +LVE+ A+ L+ + GD VAL PN +++ I
Sbjct: 35 VAKFADRPAYHSFGK-TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIAT 93
Query: 73 LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---------------TPAE------ 111
V+RA T +N YTP E + L DS + +L+ TP +
Sbjct: 94 FGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTG 153
Query: 112 -GNAAAQAAASKLNISHATATLLDADSELTLSLAHSES----DTNAISKLTNDPSDVALF 166
G+ A+ +N L + + ++ E+ +++ L +P D+A
Sbjct: 154 LGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFL 213
Query: 167 LHTSGTTSRPKGVPLTQNNLAASVSN----IKSVYKLTESDSTVIV-LPLFHVHGMLAGL 221
+T GTT KG LT NL A++ + KL E VI LPL+H+ + A
Sbjct: 214 QYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANG 273
Query: 222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
L G L + R F +++ K T +T V T+ +L+ P + ++
Sbjct: 274 LVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLN------TPGFDQI 326
Query: 282 RFIRSCSASLA------PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
F S +L + R ++ G ++EAY +TE + NPL GS
Sbjct: 327 DF-SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPL--TLKEYNGS 383
Query: 336 VGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGD 393
+G P+ + I D+ G G GE+CI+GP V KGY PE GW HTGD
Sbjct: 384 IGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443
Query: 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN 453
I D G++++V R K++I G + P E++ V+ P + + A GVPD+K GE +
Sbjct: 444 IARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVK 503
Query: 454 CAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
I+ ++ + E+V + N+ +K P+ + ELPKT GKI RR
Sbjct: 504 VVIVKKD-PALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRR 552
|
Length = 560 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 4e-55
Identities = 133/494 (26%), Positives = 203/494 (41%), Gaps = 84/494 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY ++E R A L A G+ GD+VA+ + E V+ LAV++A A PL+ AY
Sbjct: 13 LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAGAAYVPLDPAY- 71
Query: 91 PDEF-EFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
P E + L DS +KLLLT
Sbjct: 72 PAERLAYMLEDSGAKLLLT----------------------------------------- 90
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
DP D+A ++TSG+T RPKGV + L ++ ++ Y LT D +
Sbjct: 91 ---------DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFA 141
Query: 210 PL---FHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPT-IHQ 264
V + LLS GA V P + + ++ T VP+ +
Sbjct: 142 SFSFDASVWEIFPPLLS----GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRA 197
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEAT-HLMSS 322
++ A P LR + +L ++ R E GA ++ AY TE T +
Sbjct: 198 LLDALEPAAL----PSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYH 253
Query: 323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
P+D +GRP+ + +LDE P G GE+ I G V +GY N PE
Sbjct: 254 EVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTA 313
Query: 382 SAFLFGWFH--------TGDIGYFDSDGYLHLVGRI----KELINRGGEKISPIEVDAVL 429
F+ F TGD+ + DG L +GR K I G +I E++A L
Sbjct: 314 ERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVK--IR--GYRIELGEIEAAL 369
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
L+HP + +AV D + + ++P G+ +D E+ F + + + VP +
Sbjct: 370 LAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLAERLPDYMVPSAFVVL 429
Query: 490 NELPKTASGKIQRR 503
+ LP T +GK+ R+
Sbjct: 430 DALPLTPNGKVDRK 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 7e-55
Identities = 137/484 (28%), Positives = 213/484 (44%), Gaps = 52/484 (10%)
Query: 45 SRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT--PDEFEFYLSDSE 102
SRL+ G+ + + P++V + LA++ A LN +T + +
Sbjct: 21 SRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLN--FTAGEEGLRSACKQAG 78
Query: 103 SKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSESDTNAISKL-- 156
K ++T ++A KL + L +L ++ ++ ++
Sbjct: 79 IKTVIT-------SRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLKAFLAAKLP 131
Query: 157 ---------TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
P D A+ L TSG+ PKGV L+ NL A++ I +V L D +
Sbjct: 132 PALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLG 191
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTL---PAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
LPLFH G+ LL G V P + A + Y AT PT +
Sbjct: 192 ALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL----IRDYKATILCGTPTFLR 247
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
A PE LR + + + L EE FG +LE Y TE + ++S N
Sbjct: 248 GYARN--AHPEDFS-SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVN- 303
Query: 325 LPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
P +KPG+VGRP+ G E+ I+ E G G + +RGPNV GY NN E K+
Sbjct: 304 TPMG--NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEE--KT 359
Query: 383 AFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH-PDIAQ 437
+ + GW+ TGDIG D DG+L +VGR+K GGE +S V+ +L P+ +
Sbjct: 360 SEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSL 419
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN-VAAFKVPKRVFITNELPKTA 496
A VPD+K GE+I ++ ++D EE+ ++ + VP+++ +E+P
Sbjct: 420 HAAVEVPDEKKGEKI---VLLTTTEDLDPEELNAILREAGLPNLAVPRKILHVDEIPLLG 476
Query: 497 SGKI 500
SGK
Sbjct: 477 SGKT 480
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 8e-55
Identities = 132/482 (27%), Positives = 219/482 (45%), Gaps = 20/482 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y + V R + L G+ + V L + V+F I FL IRA LN T
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDADSELTLS---LAHS 146
D++ + L DS ++++ E +AA K ++ H E+ L+ S
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATES 150
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDST 205
E A ++ D A +L++SG+T PKGV T +N + ++ + E D
Sbjct: 151 EQFKPAATQ----ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVV 206
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
LF +G+ L + GA L R + + + ++ T + VPT++
Sbjct: 207 FSAAKLFFAYGLGNALTFPMSVGATTVLMGE-RPTPDAVFDRLRRHQPTIFYGVPTLYAA 265
Query: 266 VL-DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
+L D ++ + V +LR S +L + R + FG +++ TE H+ SN
Sbjct: 266 MLADPNLPAEDQV--RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSN- 322
Query: 325 LPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
LP D + G+ G+PV G + ++ + G G GE+ I GP+ Y NN +
Sbjct: 323 LPGD--VRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDT 380
Query: 384 FLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGV 443
F W +GD + DG GR +++ G +SP E+++ L+ HP + +A GV
Sbjct: 381 FQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGV 440
Query: 444 PDDKYGEEINCAIIPREGSNID---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
D+ + I+ R G +ID E E+ K +A +K P+ + ++LPKTA+GKI
Sbjct: 441 EDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKI 500
Query: 501 QR 502
QR
Sbjct: 501 QR 502
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-53
Identities = 138/573 (24%), Positives = 222/573 (38%), Gaps = 127/573 (22%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y + E S L A G+ GD + + N E++I A PL
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-SHATATLLDADSELTLSLAHSESD 149
+ E+ L+++E ++ + + S L +++ +
Sbjct: 66 EEAIEYILNETEISIVFC------------DAVKVYSFEELEELGKKNKVPPTPP----- 108
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV- 208
P D+A ++TSGTT PKGV LT N+ A V+ I + + V +
Sbjct: 109 ---------KPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYIS 159
Query: 209 -LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF--WQDMIKYNATWYTAVP----T 261
LPL H+ + G + G +S T D+ + T + VP
Sbjct: 160 YLPLAHIFERVV-ENVCLYIGGRI-----GYYSGDTRGLKGDIKELKPTVFVGVPRVLDR 213
Query: 262 IHQIVLDRHVAKPEP-------VY-------------------------------PKLRF 283
I++ +L + AK Y ++R
Sbjct: 214 IYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGRVRL 273
Query: 284 IRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG-Q 342
+ S A L+P L A G PVL+ Y +TE T + P D G VG P+
Sbjct: 274 MLSGGAPLSPDTQEFLRVALGCPVLQGYGLTE-TCAGGTLSDPGD--TTTGHVGPPLPCC 330
Query: 343 EIAILDEIGVPQEGG-------AKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDI 394
EI ++D VP E G +GE+CIRGPNV KGY NPE AF GWFHTGDI
Sbjct: 331 EIKLVD---VP-EMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDI 386
Query: 395 GYFDSDGYLHLVGRIKELI-NRGGEKISPIEVDAVLLSHPDIAQA-----------VAFG 442
G + DG L ++ R K L GE ++ +++ + S P + Q VA
Sbjct: 387 GEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIV 446
Query: 443 VPDDKYGEEINCAIIPREGSNIDE--------EEVLR-----FCKKNVAAFKVPKRVFIT 489
VPD+ E+ A G + +E + +L+ + + F++ K + +T
Sbjct: 447 VPDEDVLEKW-AAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAIHLT 505
Query: 490 NEL--PK----TASGKIQRRIVSEHFLAQVSAA 516
E P+ T + K++R + + + ++
Sbjct: 506 PEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEM 538
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 6e-53
Identities = 144/492 (29%), Positives = 220/492 (44%), Gaps = 44/492 (8%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
LTYS + VE A+RL A G+ VA+ PN+V+ VI LA+ R A A +N
Sbjct: 28 RLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRL 87
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS----LAH 145
P E ++L+ G A A + A L L L
Sbjct: 88 KPAEI--------AELI---KRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLVGLGE 136
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
ES I +P A +TSGTT PKG + Q + V + + L
Sbjct: 137 PESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHN 196
Query: 206 VIV--LPLFHVHGMLAGLLSSFA-AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI 262
V++ +PL+HV G A L+++ A G V + F + + + + T A PT
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEE---FDPADALKLIEQERVTSLFATPT- 252
Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCS---ASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
H LD A E KL + + A++ +L R+ + + Y TEA
Sbjct: 253 H---LDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEA--- 306
Query: 320 MSS--NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG---GAKGEVCIRGPNVT-KG 372
M+S P + G+ RP E+ I+ G P E G +GE+ + + T G
Sbjct: 307 MNSLYMRDP-----RTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTG 361
Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
Y N P+A GW+ T D+ D G + ++GR+ ++I GGE I P EV+ VL
Sbjct: 362 YLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRA 421
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN-VAAFKVPKRVFITNE 491
P + + V G+PD+++G+ + ++PREG + + + FC+ + +A FK P+R F +E
Sbjct: 422 PGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFLDE 481
Query: 492 LPKTASGKIQRR 503
LPK A K+ RR
Sbjct: 482 LPKNAMNKVLRR 493
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-52
Identities = 144/533 (27%), Positives = 233/533 (43%), Gaps = 57/533 (10%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLA 74
+F+ + A S G L+Y+ + A+ L + GD +A+ PN +++ I
Sbjct: 36 KFADRPAFSNLGV-TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFG 94
Query: 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLL---------------------------- 106
+RA N YT E DS ++ L
Sbjct: 95 ALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMG 154
Query: 107 -LTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVAL 165
L PA K+ L A + A + ++ + D+A+
Sbjct: 155 DLLPAAKGWLVNTVVDKVKKMVPAYHLPQA---VPFKQALRQGRGLSLKPVPVGLDDIAV 211
Query: 166 FLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----------KLTESDSTVIV--LPLF 212
+T GTT KG LT NL V+N+ V L + V++ LPL+
Sbjct: 212 LQYTGGTTGLAKGAMLTHGNL---VANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLY 268
Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA 272
H++ A + +G L R F +++ K+ + + T+ ++D H
Sbjct: 269 HIYAFTANCMCMMVSGNHNVLITNPR-DIPGFIKELGKWRFSALLGLNTLFVALMD-HPG 326
Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHK 332
+ + L+ S +L R E+ G ++E Y +TE + + S+NP E +
Sbjct: 327 FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELA--R 384
Query: 333 PGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390
G+VG PV G + ++D+ G G +GE+CI+GP V KGY PEA A GWF
Sbjct: 385 LGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFK 444
Query: 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE 450
TGDI D DG++ +V R K+LI G + P E++ V+++HP +A A GVPD++ GE
Sbjct: 445 TGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGE 504
Query: 451 EINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ ++ R+ + EE+ +CK+N +KVPK + + + LP T GKI RR
Sbjct: 505 AVKLFVVARDPG-LSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRR 556
|
Length = 562 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 2e-52
Identities = 122/503 (24%), Positives = 201/503 (39%), Gaps = 88/503 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y+ + R A L A G+ GDVVAL N E+++ +LA+ + A AA +N
Sbjct: 4 LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR 63
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ ++ S+++ ++
Sbjct: 64 GEVLAHCINVSDARAVIV------------------------------------------ 81
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
D A +++TSGTT PK ++ + + + L D + LP
Sbjct: 82 -----------DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLP 130
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
L+H + + G S+ AAGA++ L +FSAS FW D+ +Y AT + V + + +L++
Sbjct: 131 LYHSNALTVGWSSALAAGASLAL--RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQ- 187
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDG 329
KP+ LR I L P I +E FG P ++E Y TE + N
Sbjct: 188 PEKPDDRDHPLRKI--IGNGLRPDIWDEFKERFGVPRIVEFYGSTEGN-VGFINL----- 239
Query: 330 PHKPGSVGRPVGQEIAIL------DEIGVPQEG-------GAKGEVC--IRGPNVTKGYK 374
+KPG+VGR IA++ +E G G G + I N GY
Sbjct: 240 FNKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYT 299
Query: 375 NNPEANKSAFLF------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAV 428
++ K +F+TGD+ D GY + V R+ + GE +S EV+ V
Sbjct: 300 DDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEV 359
Query: 429 LLSHPDIAQAVAFGVPDDKY-GEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVF 487
L HP + +A +GV G A+ G+ D + + + A+ P +
Sbjct: 360 LAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLR 419
Query: 488 ITNELPKTASGKIQRR-IVSEHF 509
+ + T + K Q+ + E F
Sbjct: 420 VQAAMETTGTFKYQKTDLRKEGF 442
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 6e-51
Identities = 118/444 (26%), Positives = 191/444 (43%), Gaps = 53/444 (11%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+ T++++ + R A+ L + G+ GD +A+ N E++I LA+ A + PL
Sbjct: 6 EYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTL 65
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAA----SKLNISHATATLLDADSELTLSLAH 145
T + + L S++K L + A A I +TL D L A
Sbjct: 66 TAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAAT 125
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
+P D+A ++TSGTT +PKGV L+ A + + LT +D
Sbjct: 126 EPLQGR----PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRL 181
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI--- 262
+ LPL H+ + S +GA V S TF D+ + T + +VP +
Sbjct: 182 LSYLPLAHIAERVIVEGGSLYSGAEVFFV----ESLDTFAADLQRARPTVFFSVPRLWTK 237
Query: 263 --HQI-------VLDRHVAKP---EPVYPKL---------RFIRSCSASLAPVILSRLEE 301
I L+ + P V K+ R S +A + P +++ +
Sbjct: 238 FQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK 297
Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKG 360
G P+ E Y MTE + N + + G+VG+P+ G E+ I ++ G
Sbjct: 298 -LGLPICEGYGMTENFAYSTLNYPGDR---RIGTVGKPIPGVELKISED----------G 343
Query: 361 EVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGE 418
E+ IR P + GY +PE AF GW HTGD G D DG+L + GR+KEL G+
Sbjct: 344 EILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGK 403
Query: 419 KISPIEVDAVLLSHPDIAQAVAFG 442
++P ++ +L ++P + Q G
Sbjct: 404 YVAPAPIENLLSANPHVEQVCVVG 427
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 8e-51
Identities = 109/372 (29%), Positives = 178/372 (47%), Gaps = 41/372 (11%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
DP D+ + + TSGT+ PK V T +A++ + + L D + +PLFH + ++
Sbjct: 150 DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVM 209
Query: 219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
AG + AAGA++ L +FSAS F D+ +Y AT+ V VL A PE
Sbjct: 210 AGWAVALAAGASIALRR--KFSASGFLPDVRRYGATYANYVGKPLSYVL----ATPE--R 261
Query: 279 PK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKP 333
P LR + AP ++R FG V++ + TE ++ P D P P
Sbjct: 262 PDDADNPLRIVYGNEG--APGDIARFARRFGCVVVDGFGSTEGGVAITRTP---DTP--P 314
Query: 334 GSVGRPVGQEIAILD-------------EIGVPQEGGAKGE-VCIRGPNVTKGYKNNPEA 379
G++G +AI+D + + A GE V GP +GY N+PEA
Sbjct: 315 GALGPLPPG-VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEA 373
Query: 380 NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKI--SPIEVDAVLLSHPDIAQ 437
+ G + +GD+ Y D+DGY + GR+ + + GE + +PIE +LL +PD +
Sbjct: 374 DAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIE--RILLRYPDATE 431
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF--CKKNVAAFKVPKRVFITNELPKT 495
+ VPD G+++ A++ G+ D + F + ++ + P V + ELP+T
Sbjct: 432 VAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRT 491
Query: 496 ASGKIQRRIVSE 507
A+ K+ +R +S
Sbjct: 492 ATFKVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-50
Identities = 118/490 (24%), Positives = 214/490 (43%), Gaps = 45/490 (9%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY + A+ L AAG+ GD+VA+ P E ++ L ++ A A P++
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ L+ + ++ +LT ++ + + D A +ES
Sbjct: 73 AERRAAILARAGARAVLT--------DPGLAQPEEAPDLLVVADDA-------AAAESPA 117
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV-- 208
++ DP D+A + TSG+T PKGV +T ++ ++ + + +D + +
Sbjct: 118 PPPPRV--DPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSA 175
Query: 209 ----LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIH 263
L ++ + G L+ AGAA+ LP R W +++ ++ T + +VP +
Sbjct: 176 LHFDLSVYDIFGALS-------AGAALVLPDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL-SRLEEAF-GAPVLEAYAMTEATHLMS 321
++L + + P LR + S P+ L RL GA ++ TEA+
Sbjct: 229 DMLLT-YAEDAARLLPSLRLV-MLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSI 286
Query: 322 SNPLPEDGPHKPGSV--GRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
P+ + P S+ G+P Q+ +LDE G GE+ I G V GY +PE
Sbjct: 287 YYPIDDVDPDWR-SIPYGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGDPE 345
Query: 379 ANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
F+ + TGD+G + DG + +GR + G ++ E++A L HP
Sbjct: 346 LTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHP 405
Query: 434 DIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELP 493
+ +AV V D + + ++ +G+ +D + + + A+ VP R + + LP
Sbjct: 406 GVQRAVVV-VVGDGGAKALAAFVVAEDGAAVDAAVLRAALAELLPAYMVPSRFVVLDALP 464
Query: 494 KTASGKIQRR 503
TA+GK+ R+
Sbjct: 465 LTANGKVDRK 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-50
Identities = 141/541 (26%), Positives = 231/541 (42%), Gaps = 71/541 (13%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TY+ +++ V R A L G+ GD V + P E VI LA R A + + +
Sbjct: 74 YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK------LNIS-HATATLLDADSELTL-- 141
E + D++ KL++T + G + K L +S H +L +
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQVPAP 193
Query: 142 ----------SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL-TQNNLAASV 190
L + + + DP + L+TSGTT +PKGV T A
Sbjct: 194 LKPGRDLDWAELMAKARPVDCVPVESTDPLYI---LYTSGTTGKPKGVVRDTGGYAVALK 250
Query: 191 SNIKSVYKLTE-------SDSTVIVLPLFHVHG-MLAGLLSSFAAGAAVTLPAAGRFSAS 242
+++++Y + SD +V + V+G +L G + G V P AG
Sbjct: 251 WSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAG----- 305
Query: 243 TFWQDMIKYN-ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS----------- 290
+W+ + +Y +TA I I + + P +I+ S
Sbjct: 306 AYWRVIEEYGVNALFTAPTAIRAI-------RKQD--PDGEYIKKYDLSSLRALFLAGER 356
Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRPV-GQEIAILD 348
L L +E+ G PV++ + TE +++N + E P KPGS G+PV G ++ +LD
Sbjct: 357 LDSPTLEWIEKTLGVPVIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD 416
Query: 349 EIGVPQEGGAKGEVCIRGP---NVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGY 402
E G G G + I+ P + E K +L G++ TGD GY D DGY
Sbjct: 417 ETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGY 476
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS 462
L ++GR ++IN G ++S E++ +L HPD+A+ GV D+ G+ ++ ++
Sbjct: 477 LFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDC 536
Query: 463 NID----EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKV 518
ID E E++ ++ + + V LPKT SGKI RR + + +A K
Sbjct: 537 KIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTLRK--IADGEDYKD 594
Query: 519 P 519
P
Sbjct: 595 P 595
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 1e-50
Identities = 149/543 (27%), Positives = 223/543 (41%), Gaps = 56/543 (10%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
+ L V D + AL V G LTY+ + E R A L+A G+ GD V + N
Sbjct: 4 NIADLFEAVADAVPDRVAL-VCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARN 62
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL---TPAEGNAAAQAAAS 121
+E+V L +ARA +N Y DE + L DS++ L+ A A
Sbjct: 63 RIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP 122
Query: 122 KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPK 177
KL + D L A D A D D L+T GTT PK
Sbjct: 123 KL---RTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLYLLYTGGTTGMPK 179
Query: 178 GVPLTQNNL---------AASVSNIKSVYKLTE-----SDSTVIVL-PLFHVHGMLAGLL 222
GV Q ++ A+ I+ +L + PL H G A
Sbjct: 180 GVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFA 239
Query: 223 SSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV------PTIHQIVLDRHVAKPEP 276
+ F+ V LP RF A W+ + + T V P + + P
Sbjct: 240 ALFSGQTVVLLPDV-RFDADEVWRTIEREKVNVITIVGDAMARPLL------DALEARGP 292
Query: 277 VY--PKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKP 333
Y L I S A +P + L E + ++ +E S G
Sbjct: 293 -YDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSG--TVAKGAVHT 349
Query: 334 GSVGRPVGQEIAILDEIGVPQEGGAKGEVCI--RGPNVTKGYKNNPEANKSAFLF----G 387
G +G +LDE G P E G+ GE+ R ++ GY +PE K+A F G
Sbjct: 350 GGPRFTIGPRTVVLDEDGNPVEPGS-GEIGWIARRGHIPLGYYKDPE--KTAETFPTIDG 406
Query: 388 --WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
+ GD ++DG + L+GR IN GGEK+ P EV+ L +HPD+A A+ GVPD
Sbjct: 407 VRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPD 466
Query: 446 DKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505
+++G+E+ + REG+ D E+ C+ ++A +KVP+ ++ +E+ ++ +GK R
Sbjct: 467 ERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWA 526
Query: 506 SEH 508
E
Sbjct: 527 KEQ 529
|
Length = 533 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-49
Identities = 157/532 (29%), Positives = 231/532 (43%), Gaps = 70/532 (13%)
Query: 37 HELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDE 93
HE V+ A+ L+ G+ GDVVA+ N+ ++ LAV A APLN ++ +E
Sbjct: 36 HEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEE 95
Query: 94 FEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATA----TLLDADSE-----LTLSLA 144
+ + +L+T + + +L + L++ S L L
Sbjct: 96 AKSAMLLVRPVMLVT----DETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLT 151
Query: 145 HSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSV-YK 198
A+ D P D L TSGTT RPKGV ++ + L S++ I V Y
Sbjct: 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGY- 210
Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
E D + PL H+ G+ + L V LP +F A Q + ++N T
Sbjct: 211 -GEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLP---KFDAKAALQAIKQHNVTSMIT 266
Query: 259 VPTIHQ--IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
VP + I L R + V+P +R I + SL+ +L ++ F A + AY MTE
Sbjct: 267 VPAMMADLISLTR-KSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTE 325
Query: 316 A------------THLMSSNPLPEDGPHKPGSVGRPVGQEI---AILDEIGVPQEGGAK- 359
A T L K SV +P G + A E+ + + ++
Sbjct: 326 ACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRV 385
Query: 360 GEVCIRGPNVTKGY-KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGE 418
G + RGP+V GY N E GW TGDIG+ D G L L+GR + I GGE
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE 445
Query: 419 KISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG---SNIDEE-------- 467
+ P EV+AVL HP +A V GVPD + E + + R+G S+ ++E
Sbjct: 446 NVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTL 505
Query: 468 --EVLR-FC-KKNVAAFKVPKRVFITNE--LPKTASGKIQR----RIVSEHF 509
E LR C +KN++ FK+PK F+ P T +GKI+R R V H
Sbjct: 506 SSETLRHHCREKNLSRFKIPKL-FVQWRKPFPLTTTGKIRRDEVRREVLSHL 556
|
Length = 563 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 3e-49
Identities = 132/483 (27%), Positives = 201/483 (41%), Gaps = 68/483 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+++ + R A+ L G+ GD V L PN E LA I+ A P T
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P + S G A A
Sbjct: 61 PADLRDRFSR-----------GKPKAIVADE----------------------------- 80
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTV-I 207
D L TSGTT PK V T + V ++ ++Y L D + I
Sbjct: 81 -------TRADDPILLYFTSGTTGLPKLVLHTHVSYP--VGHLSTMYWIGLQPGDIHLNI 131
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
P + H + + + AGA V RF A + + K+ T + A PT+ ++ +
Sbjct: 132 SSPGWAKHAW-SSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFI 190
Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327
+ +A+ +LR S L P ++ R+++A+G + + Y TE T M N P
Sbjct: 191 QQDLAQ---YDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETT-AMIGNS-PG 245
Query: 328 DGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI----RGPNVTKGYKNNPEANKS 382
KPGS+GRP+ G + +LD+ G +GE+ + R + GY +PE +
Sbjct: 246 Q-KVKPGSMGRPLPGYRVVLLDDEGKEI-PVTEGEIALDLGDRPIGLMLGYMGDPEKTAA 303
Query: 383 AFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFG 442
AF G++ TGD Y D DGYL VGR ++ +ISP EV++ LL HP +A+A
Sbjct: 304 AFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVP 363
Query: 443 VPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGK 499
PD I+ + G E E+ ++ +A +K +R+ ELPKT SGK
Sbjct: 364 SPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISGK 423
Query: 500 IQR 502
I+R
Sbjct: 424 IRR 426
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-48
Identities = 128/463 (27%), Positives = 200/463 (43%), Gaps = 48/463 (10%)
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
NT E + A LN + ++ +LL+T AE L
Sbjct: 61 NTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEH--RPLLDGLDL 118
Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
+LD D+ L + ++ D D + + TSGTT PK V +
Sbjct: 119 ----PGVRVLDVDTPAYAELVAAAGALTPHREV--DAMDPFMLIFTSGTTGAPKAVRCSH 172
Query: 184 NNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243
LA + + + LT D + +PLFH + ++AG + A+GAAV LPA +FSAS
Sbjct: 173 GRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA--KFSASG 230
Query: 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-----KLRFIRSCSASLAPVILSR 298
F D+ +Y AT++ V +L A PE P LR AS P ++
Sbjct: 231 FLDDVRRYGATYFNYVGKPLAYIL----ATPE--RPDDADNPLRVAFGNEAS--PRDIAE 282
Query: 299 LEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV----------GQE--IAI 346
FG V + Y +E ++ P PGS+GR E +A
Sbjct: 283 FSRRFGCQVEDGYGSSEGAVIVV---REPGTP--PGSIGRGAPGVAIYNPETLTECAVAR 337
Query: 347 LDEIGV---PQEGGAKGE-VCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY 402
D G E A GE V G +GY NNPEA G + +GD+ Y D+DG+
Sbjct: 338 FDAHGALLNADE--AIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGW 395
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS 462
++ GR + + GE +S ++ +LL HP I + + VPD++ G+++ A++ R+G+
Sbjct: 396 IYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA 455
Query: 463 NIDEEEVLRF--CKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
D + F + ++ P+ V I +LP TA+ K+ +R
Sbjct: 456 TFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKR 498
|
Length = 540 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 6e-48
Identities = 134/512 (26%), Positives = 202/512 (39%), Gaps = 91/512 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY+ ++E R A RL A G+ GDVVAL + E V+ LA+++A A PL+ AY
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ F L DS +++LLT A+A L I DA
Sbjct: 73 AERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELDAEDAGPPA----------- 121
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
D D+A ++TSG+T RPKGV + + V N + L D + + P
Sbjct: 122 -----PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRN-TNYIALDPDDRFLQLSP 175
Query: 211 L------FHVHGML-----------AGLLSSFAAGAAVTLPAAGRFSASTFW------QD 247
L F + G L LL + + W
Sbjct: 176 LSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLARLIA-----EQGVTVLWLTAALFNQ 230
Query: 248 MIKYNATWYTAVPTIHQI-----VLD-RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE 301
++ + A+ + Q+ VL HV + P LR I
Sbjct: 231 LVDEDPE---ALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLI----------------- 270
Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSV--GRPVGQEIA-ILDEIGVPQEGGA 358
Y TE T + + + S+ GRP+ ILDE G P G
Sbjct: 271 -------NGYGPTENTTFSTCHVITRLDEA-ADSIPIGRPIPNTTVYILDEEGQPVPIGV 322
Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRIKE 411
GE+ + G + GY N PE F+ FG + TGD+ + DG + +GRI
Sbjct: 323 PGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDR 382
Query: 412 LINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471
+ G +I E++ LL HP + +A V +D G++ A + G+ +D E+
Sbjct: 383 QVKIRGFRIELGEIEQALLQHPGVREAAVL-VREDAAGDKRLVAYVVARGA-LDAAELRA 440
Query: 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + A+ VP + +ELP TA+GK+ RR
Sbjct: 441 HLAERLPAYMVPAAFVVLDELPLTANGKVDRR 472
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 6e-48
Identities = 119/503 (23%), Positives = 203/503 (40%), Gaps = 106/503 (21%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY+ + + A L++ G+ GD+VAL + + LAV++A A P++ +
Sbjct: 18 LTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSAP 77
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ +F + DS + ++LT
Sbjct: 78 VERLQFIIEDSGATVVLT------------------------------------------ 95
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
+ P D A ++TSG+T +PKGV +T N+ + ++ + D VL
Sbjct: 96 -------SSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGD---RVLQ 145
Query: 211 LFHVH--GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQD-MIKYNATWYTAVPTIHQIVL 267
+ + + ++ AG TL + + + T P++ ++
Sbjct: 146 FASIAFDVSILEIFTTLLAGG--TLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL- 202
Query: 268 DRHVAKPEPVYPKLRFI----RSCSASLAPVILSRLEEAFGAPV--LEAYAMTEATHLMS 321
PE V P LR + +C +L + + P L Y TEAT +
Sbjct: 203 -----DPEDV-PSLRTLILGGEACPQALV--------DRWSKPRRLLNTYGPTEATVTAT 248
Query: 322 SNPLPEDGPHKPGSVGRPVG-QEIAILD---EIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
++ L P KP ++GRP+ +LD E VP GA GE+CI GP V +GY N P
Sbjct: 249 ASRL---TPGKPVNIGRPLPNYTCWVLDPDLEPLVPI--GAVGELCIGGPGVARGYLNRP 303
Query: 378 EANKSAFLFG--W--------FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
E F+ W + TGD+ + DG L +GR + + G++I E++A
Sbjct: 304 ELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEA 363
Query: 428 VLLSHPDI-AQAVAFGVPDDKYGEEINCA-IIPREGSN-----IDEEEVLRFCKKNVAAF 480
VL + P + AV + D G + A + + +D + ++ + ++
Sbjct: 364 VLRALPGVVVAAVVLLLDDP--GGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSY 421
Query: 481 KVPKRVFITNELPKTASGKIQRR 503
VP +ELP TASGK+ R+
Sbjct: 422 MVPSVYVPLDELPLTASGKVDRK 444
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 6e-48
Identities = 136/479 (28%), Positives = 214/479 (44%), Gaps = 21/479 (4%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LT+ + E + A+ L A I VV + N FV LA R A LN ++
Sbjct: 69 LTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFA 128
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
++ ++ E +A A + AT + D + L++
Sbjct: 129 GPALAEVVTREGVDTVIYDEEFSATVDRALADC--PQATRIVAWTDEDHDLTVE-VLIAA 185
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
+A + + L TSGTT PKG + ++ I + TVIV P
Sbjct: 186 HAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAP 245
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FH G + L+ AA A T+ RF + ++ AT VP + DR
Sbjct: 246 MFHAWG-FSQLV--LAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVM----FDRI 298
Query: 271 VAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
+ P V + LRF + + + P ++ + FG + Y TEA M +
Sbjct: 299 MDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG--MIATAT 356
Query: 326 PEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
P D P + GRP G EI ILD+ G G + +R GY + K F
Sbjct: 357 PADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGY--TSGSTK-DF 413
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444
G+ +GD+GY D +G L +VGR E+I GGE + PIEV+ L +HPD+A+A GV
Sbjct: 414 HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVD 473
Query: 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
D++YG+ + ++ + G++ E + + + N+A +KVP+ + + +ELP+ A+GKI RR
Sbjct: 474 DEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRR 532
|
Length = 537 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 7e-48
Identities = 137/492 (27%), Positives = 229/492 (46%), Gaps = 23/492 (4%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
+ G+ +Y +++ + A L GI GD + N EF I F A+++ AP
Sbjct: 43 ICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL--GVAP 100
Query: 85 LNAAYTPDEFEF--YLSDSESKLLLTPAEGNA-AAQAAASKLNISHAT-ATLLDADSELT 140
+NA ++ E Y S E LL+ + + + L H++ +L + +
Sbjct: 101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGE 160
Query: 141 LSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
SL + + T P+D VA F + G+T PK +P T N+ SV +
Sbjct: 161 HSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGF 220
Query: 200 TESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
T + LP H + M + G L F AG V L A SA+ + + K+
Sbjct: 221 TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVL--APDPSATLCFPLIEKHQVNVTAL 278
Query: 259 VPTIHQIVLDRHVAKPEPVYP--KLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
VP + L + +A+ L+ ++ A L+ + R+ G + + + M E
Sbjct: 279 VPPAVSLWL-QAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEG 337
Query: 317 THLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
L++ L + + GRP+ E+ + D G P G G + RGP +GY
Sbjct: 338 --LVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYY 395
Query: 375 NNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
+P+ N SAF G++ +GD+ D DGY+ +VGR K+ INRGGEKI+ E++ +LL HP
Sbjct: 396 KSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHP 455
Query: 434 DIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDEEEVLRFCK-KNVAAFKVPKRVFITNE 491
+ A + D+ GE+ +CA ++ +E + ++ RF + + +A FK+P RV +
Sbjct: 456 AVIHAALVSMEDELMGEK-SCAFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVECVDS 512
Query: 492 LPKTASGKIQRR 503
LP TA GK+ ++
Sbjct: 513 LPLTAVGKVDKK 524
|
Length = 536 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-47
Identities = 134/501 (26%), Positives = 234/501 (46%), Gaps = 32/501 (6%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY++IH+ + + L GI GD VA NT + + ++ A +N P
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAH-- 145
++ + ++ +E ++++T + A KL L DA + L ++A+
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEE 160
Query: 146 --SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ--NNLAASVSNIKSVYKLTE 201
+E+D + K T D + A +TSGTT PKGV + N L A ++N +
Sbjct: 161 WIAEADGDFAWK-TFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA 219
Query: 202 SDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
+D+ + V+PLFH + G+ S+ + G + +P A + ++ ++ + T+ VP
Sbjct: 220 ADTMLPVVPLFHANSW--GIAFSAPSMGTKLVMPGA-KLDGASVYELLDTEKVTFTAGVP 276
Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
T+ ++L +++ K P L+ + C S P + + E G V A+ MTE + L
Sbjct: 277 TVWLMLL-QYMEKEGLKLPHLKMV-VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLG 334
Query: 321 SSNPLPEDGPHKPGSV--------GR-PVGQEIAILDEIG--VPQEGGAKGEVCIRGPNV 369
+ L PG G P G E+ I D+ G +P +G G + +RGP V
Sbjct: 335 TLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAV 394
Query: 370 TKGY-KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAV 428
Y + + E G+F TGD+ D+ GY+ + R K++I GGE IS I+++ +
Sbjct: 395 AAAYYRVDGEILDDD---GFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENL 451
Query: 429 LLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFI 488
+ HP +A+A GV K+ E + + G EE+L++ +A + +P V
Sbjct: 452 AVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAF 511
Query: 489 TNELPKTASGKIQRRIVSEHF 509
+ +P TA+GKI + + E F
Sbjct: 512 VDAIPHTATGKILKTALREQF 532
|
Length = 542 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-47
Identities = 150/540 (27%), Positives = 231/540 (42%), Gaps = 99/540 (18%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY ++ V R A+ L + G+ GD VA+ P E I LA R A + + A ++
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFS 138
Query: 91 PDEFEFYLSDSESKLLLTPAEG-------------NAAAQAAASKLNISHATATLLDADS 137
+ ++D++SKLL+T G + A + S + T +
Sbjct: 139 AEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPM 198
Query: 138 ELTLSLAHSESDTNAISKLT------NDPSDVALF-LHTSGTTSRPKGVPLTQ---NNLA 187
+ + A DP LF L+TSG+T +PKGV T A
Sbjct: 199 VEGRDVWWHDLMAKASPYCEPEPMDAEDP----LFILYTSGSTGKPKGVVHTTGGYLVYA 254
Query: 188 ASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233
A+ K V+ + D S ++ PL G + GA
Sbjct: 255 ATTF--KYVFDIHPDDVYWCTADIGWITGHSYIVYGPL------ANGATTVMYEGAP-DY 305
Query: 234 PAAGRFSASTFWQDMI-KYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPK------LRFI 284
P GR +W +++ KY T +YTA PT I R + + +PK LR +
Sbjct: 306 PDPGR-----WW-EIVEKYKVTIFYTA-PTAI------RMLMRFGDEWPKKHDLSSLRLL 352
Query: 285 RSCSASLAPVILSRLEEAF-------G---APVLEAYAMTEATHLMSSNPLPEDGPHKPG 334
S + P EA+ G P+++ + TE M + PLP P KPG
Sbjct: 353 GSVGEPINP-------EAWMWYYEVIGKERCPIVDTWWQTETGGHMIT-PLPGATPLKPG 404
Query: 335 SVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFL--F-GW 388
S RP G E AI+DE G EGG +G + I+ P + + + E + F G+
Sbjct: 405 SATRPFPGVEPAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGY 464
Query: 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448
+ TGD D DGY ++GR+ ++IN G ++ EV++ L+SHP +A+A G PD+
Sbjct: 465 YFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVK 524
Query: 449 GEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505
GE I + ++G +E E+ + +K + P + LPKT SGKI RRI+
Sbjct: 525 GEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRIL 584
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 6e-47
Identities = 134/501 (26%), Positives = 224/501 (44%), Gaps = 36/501 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY + E R A + G+ GD VA+ N + ++ + A R+ +N+ T
Sbjct: 25 VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDADSELTLSLAHSESD 149
P E + + DS ++ L+T A A+A + + H D + E + A
Sbjct: 85 PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYA----- 139
Query: 150 TNAISKLTNDP----SDVALFLHTSGTTSRPKGV--PLTQNNLAASVSNIKSVYKLTESD 203
A++ L P S L++SGTT RPKG+ PL + + + +L
Sbjct: 140 -EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFR 198
Query: 204 STVIVL---PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVP 260
S ++ L PL+H A +L G + + F A + + +Y T VP
Sbjct: 199 SDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME---HFDAEQYLALIEEYGVTHTQLVP 255
Query: 261 TIHQIVLDRHVAKPEPVYPK-----LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315
T+ R + PE V K L +A P + ++ + +G + E YA TE
Sbjct: 256 TM----FSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATE 311
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
+ + E+ PG+VGR + ++ ILD+ G G G + G + Y N
Sbjct: 312 GLGFTACDS--EEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRPFE-YLN 368
Query: 376 NPEANKSAFL--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433
+P A W GDIGY D DGYL+L R +I GG I P E + +L++HP
Sbjct: 369 DPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHP 428
Query: 434 DIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITN 490
+A A FGVP++ GEE+ + P +G + E++ FC++ ++ K P+ + +
Sbjct: 429 KVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFED 488
Query: 491 ELPKTASGKIQRRIVSEHFLA 511
ELP+ +GK+ +R++ + +
Sbjct: 489 ELPRLPTGKLYKRLLRDRYWG 509
|
Length = 511 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-46
Identities = 139/498 (27%), Positives = 211/498 (42%), Gaps = 36/498 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+ + + LV+R A+ L A G+ GD VA+ PN +E+V++FLA R AT +N Y
Sbjct: 36 LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYR 95
Query: 91 PDEFEFYLSDSESKLLL----------------TPAEGNAAAQAAASKLNISHATATLLD 134
E L ++ L+ P + +A A + + AT
Sbjct: 96 SHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAP 155
Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+L A + DP AL TSGTTS PK V Q L I
Sbjct: 156 GARVQLFALPDPAPPAAAGER-AADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIA 214
Query: 195 SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNA 253
Y + LP V G + LL + A GA V P F A+ + + ++
Sbjct: 215 RAYGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPV---FDAARTARALRRHRV 270
Query: 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313
T + + +LD A +P R S + A L+ L A G P+ Y
Sbjct: 271 THTFGNDEMLRRILD--TAGERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGS 328
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEG-----GAKGEVCIRGPN 368
+E L++ P + + GRP E + PQ+G G GE+ IR P+
Sbjct: 329 SEVQALVALQPATDPVSVRIEGGGRPASPEARV--RARDPQDGALLPDGESGEIEIRAPS 386
Query: 369 VTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
+ +GY +NP+A A G+F TGD+GY DG R+ + + GG ++P E++
Sbjct: 387 LMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEH 446
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVF 487
L + P +A A G D + +IP +G++ DE ++ C++ +A FKVP RV
Sbjct: 447 ALEALPGVAAAQVVGATRDGKTVPV-AFVIPTDGASPDEAGLMAACREALAGFKVPARVQ 505
Query: 488 ITNELPKTASG---KIQR 502
+ P T S KIQ+
Sbjct: 506 VVEAFPVTESANGAKIQK 523
|
Length = 540 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 6e-45
Identities = 140/508 (27%), Positives = 211/508 (41%), Gaps = 78/508 (15%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TYS + V R AS L A G+ GD V + P E V+ LA+ + A A P+ + +
Sbjct: 8 WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
PD L D+E+K+L+T A+G
Sbjct: 68 PDAVATRLQDAEAKVLIT-ADG---------------------------------FLRRG 93
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDSTVIVL 209
+ L +DP A+ ++TSGTT +PKG T + +I + L D L
Sbjct: 94 KRVD-LKDDP---AMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGD----RL 145
Query: 210 PLFHVHGMLAG---LLSSFAAGAAVTL-------PAAGRFSASTFWQDMIKYNATWYTAV 259
G + G +L GA + L P R W+ + ++ T
Sbjct: 146 LWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL-----WRIVERHKVTHLGLS 200
Query: 260 PTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFG---APVLEAYAMTE 315
PT+ + + A E LR + S P L E G AP++ TE
Sbjct: 201 PTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTE 260
Query: 316 AT-HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNV--TK 371
+ ++ + P+ P KP S P G + ++DE G P G GE+ +R P T+
Sbjct: 261 ISGGILGNVPIR---PIKPCSFNGPSPGMDADVVDEDGRPVRGE-VGELVVRAPWPGMTR 316
Query: 372 GYKNNP----EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
G+ +P E S F W H GD D DGY +++GR + I G+++ P E+++
Sbjct: 317 GFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIES 375
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK---VPK 484
VL SHP +A+A A GVPD GE I C ++ + G A P+
Sbjct: 376 VLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPR 435
Query: 485 RVFITNELPKTASGKIQRRIVSEHFLAQ 512
V ++LPKT +GKI RR++ +L Q
Sbjct: 436 EVHFVSDLPKTRNGKIMRRVIRAAYLGQ 463
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 7e-45
Identities = 131/501 (26%), Positives = 226/501 (45%), Gaps = 33/501 (6%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY ++ A L A G+ GD V N + + V + A +N P
Sbjct: 41 TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100
Query: 92 DEFEFYLSDSESKLLL-----TPAEGNAAAQAAASKLNISHATATLLDADSELTLS---L 143
++ + ++ +E + +L P A Q K ++ A L A S L L
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETL 160
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN--LAASVSNIKSVYKLTE 201
++ + D + + +TSGTT PKG + + L A + + L+
Sbjct: 161 VGAQDGDYDWPRF--DENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSA 218
Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFA-AGAAVTLPAAGRFSASTFWQDMIKYNATWYTA-V 259
D+ + V+P+FHV+ GL S GA + LP S + ++I+ ++A V
Sbjct: 219 RDAVLPVVPMFHVNAW--GLPYSAPLTGAKLVLPGPDLDGKSLY--ELIEAERVTFSAGV 274
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE---- 315
PT+ +L+ H+ + + LR ++ P ++ E+ +G V+ A+ MTE
Sbjct: 275 PTVWLGLLN-HMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPL 333
Query: 316 ---ATHLMSSNPLPEDGPHK-PGSVGRPV-GQEIAILDEIG--VPQEGGAKGEVCIRGPN 368
+ LP D K GR + G ++ I+ + G +P +G A G++ +RGP
Sbjct: 334 GTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPW 393
Query: 369 VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAV 428
V Y S + GWF TGD+ D+DG++ + R K++I GGE IS I+++ V
Sbjct: 394 VIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENV 450
Query: 429 LLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFI 488
++HP +A+A K+ E ++ R G+ + EE+L F + VA + +P V
Sbjct: 451 AVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVF 510
Query: 489 TNELPKTASGKIQRRIVSEHF 509
+ +P TA+GK+Q+ + E F
Sbjct: 511 VDAIPHTATGKLQKLKLREQF 531
|
Length = 539 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-45
Identities = 144/535 (26%), Positives = 234/535 (43%), Gaps = 87/535 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY +H V R A+ L + G+ GD VA+ P E I LA R A + + ++
Sbjct: 89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFS 148
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS--ELTLSLAHSES 148
+ ++D+ +KL++T EG + K + A L E L + + +
Sbjct: 149 AEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEA---LEKCPVSVEHVLVVRRTGN 205
Query: 149 DTNAIS-------KLTNDPSDVA----------LF-LHTSGTTSRPKGVPLTQN--NLAA 188
+ L S LF L+TSG+T +PKGV T L A
Sbjct: 206 PVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYA 265
Query: 189 SVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAVTL- 233
+++ +K V+ + + D S ++ PL A GA +
Sbjct: 266 AMT-MKYVFDIKDGDIFWCTADVGWITGHSYIVYGPL--------------ANGATTVMF 310
Query: 234 ------PAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVL---DRHVAKPEPVYPKLRF 283
P GRF W+ + K+ T +YTA PT + ++ D V K + LR
Sbjct: 311 EGTPTYPDPGRF-----WEIIEKHKVTIFYTA-PTAIRALMRLGDEWVKKHD--LSSLRL 362
Query: 284 IRSCSASLAPVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
+ S + P + G P+++ + TE +M + PLP P KPGS P
Sbjct: 363 LGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMIT-PLPGATPTKPGSATLPF 421
Query: 341 -GQEIAILDEIGVPQEG-GAKGEVCIRG--PNVTKGYKNNPEANKSAFLF---GWFHTGD 393
G E A++DE G P EG G G + I+ P + + + E + G++ TGD
Sbjct: 422 FGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGD 481
Query: 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN 453
D DGY+ + GR+ ++IN G ++ E+++ L+SHP +A+A G+PDD G+ I
Sbjct: 482 GARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIY 541
Query: 454 CAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505
+ ++G D+E E+ + +K + P ++ LPKT SGKI RR++
Sbjct: 542 AFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLL 596
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-44
Identities = 135/525 (25%), Positives = 228/525 (43%), Gaps = 56/525 (10%)
Query: 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
R + GK T+ + ++ R A+ L++ I DVV++ PNT M AV A A
Sbjct: 30 RTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA 89
Query: 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL---LDADS 137
P+N L ++ K+L A+ L+ + L +
Sbjct: 90 VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEI 149
Query: 138 ELTLSLAHSESDTNA-ISKLTNDPSDVA-LFL-----------HTSGTTSRPKGVPLTQN 184
+ + E D I + PS VA +F +TSGTT+ PKGV ++
Sbjct: 150 DFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHR 209
Query: 185 NLAASVSNIKSV--YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242
A +S + ++ +++ + LP+FH +G ++ G +V + +A
Sbjct: 210 --GAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR---HVTAP 264
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
++++ +N T VPT+ I+L + P + + S P L + +
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPP--PAALVKKVQR 322
Query: 303 FGAPVLEAYAMTEATHLM-------SSNPLPEDGPHKPGSVGRPVGQEIAILDEI----- 350
G V+ AY +TEAT + N LPE ++ + G I L ++
Sbjct: 323 LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE---NQQMELKARQGVSILGLADVDVKNK 379
Query: 351 ----GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLV 406
VP++G GE+ I+G ++ KGY NP+A AF GW +TGD+G DG++ +
Sbjct: 380 ETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIK 439
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN--- 463
R K++I GGE IS +EV+ VL +P + + +P +G E CA + E
Sbjct: 440 DRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWG-ETPCAFVVLEKGETTK 498
Query: 464 --------IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
E +++ +C++N+ F P++V ELPK +GKI
Sbjct: 499 EDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
|
Length = 579 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-44
Identities = 148/530 (27%), Positives = 214/530 (40%), Gaps = 77/530 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+Y+ + E ER + L A G+ GD V L +FV F A + P+ T
Sbjct: 40 QSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPVAVPPT 99
Query: 91 PDEFEFYLSDSESKL-----------LLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
DE + + +KL +LT +AA AA + L T L+A L
Sbjct: 100 YDE----PNAAVAKLRNIWELLGSPVILT----DAALVAALAGL----RTRAGLEALRVL 147
Query: 140 TLSLAHS-ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
+ S D P D AL L TSG+T PK V LT N+ A + V
Sbjct: 148 AIEELRSAPPDAPL---HPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNG 204
Query: 199 LTESDSTVIVLPLFHVHGML-AGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWY 256
T D ++ +PL HV G++ L + + +P + W D+I +Y T
Sbjct: 205 FTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLIDRYRVT-I 263
Query: 257 TAVPTIHQIVLDRHVAKPEP---VYPKLRFIRSCS-ASLAPVI--LSRLEEAFGAP---V 307
T P +L+ + + E LR+I + A +A I L +G P +
Sbjct: 264 TWAPNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAI 323
Query: 308 LEAYAMTEATHLMSSNPLPEDGPHKPG------------------------SVGRPV-GQ 342
A+ M+E ++ + GP G +GRP+ G
Sbjct: 324 RPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGV 383
Query: 343 EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDG 401
I I+DE G G G + +RGP VT GY NPEAN AF GWF TGD+G+ DG
Sbjct: 384 AIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DG 442
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ--AVAFGVPDDKYGEEINCAII-- 457
L + GR K++I G E++A + P + A V D G + A+
Sbjct: 443 RLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD-ELAVFFV 501
Query: 458 PREGSNIDEEEVLRFCKKNVAAFKV---PKRV--FITNELPKTASGKIQR 502
PR + +LR + A K+ P V + PKT+ GKIQR
Sbjct: 502 PRYDLDDRLAALLRAI-RTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQR 550
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 3e-44
Identities = 141/527 (26%), Positives = 228/527 (43%), Gaps = 52/527 (9%)
Query: 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80
R V G T+++ ++ R AS L I G VA+ PN V A A
Sbjct: 36 RKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGA 95
Query: 81 TAAPLNAAYTPDEFEFYLSDSESKLLL------TPAEGNAAAQAAASKLNISHATATLLD 134
+N F L S+S++++ T AE A K + ++
Sbjct: 96 VVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIG 155
Query: 135 ADSELTLSLAH-------------SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
+ SL + D K D +TSGTT+ PKGV L
Sbjct: 156 DPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVL 215
Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
+ ++ + E + LP+FH +G + G + L + +A
Sbjct: 216 HHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR---QVTA 272
Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP--EPVYPKLRFIRSCSASLAP--VILS 297
+ + Y T + A P +VL+ V P E + P R + +A AP +L
Sbjct: 273 KAIYSAIANYGVTHFCAAP----VVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF 328
Query: 298 RLEEAFGAPVLEAYAMTEATHLMSS--------NPLPEDGPHKPGSVG--RPVGQE---- 343
+ E G V Y ++E T+ S+ + LP + + + R +G E
Sbjct: 329 AMSEK-GFRVTHTYGLSE-TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV 386
Query: 344 IAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYL 403
+ VP +G GE+ +RG V KGY NP+AN+ AF GWFH+GD+G DGY+
Sbjct: 387 VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYI 446
Query: 404 HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463
+ R K++I GGE IS +EV+ V+ +HP + +A PD+++GE + + G +
Sbjct: 447 EIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD 506
Query: 464 IDEE-----EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505
+E ++++FC++ + A+ VPK V + LPKTA+GKIQ+ ++
Sbjct: 507 KSDEAALAEDIMKFCRERLPAYWVPKSV-VFGPLPKTATGKIQKHVL 552
|
Length = 567 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-42
Identities = 123/493 (24%), Positives = 203/493 (41%), Gaps = 77/493 (15%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
L+Y+ + E + A+RL A G+ GD V + + + V LA+++A A P
Sbjct: 7 RDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVP 66
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
L+ +Y + ++ L D+E LLLT
Sbjct: 67 LDPSYPAERLQYMLEDAEPALLLT------------------------------------ 90
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
DP D+A ++TSG+T +PKGV ++ L + ++ L SD
Sbjct: 91 --------------DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDR 136
Query: 205 TVIVLPL-FHVHG--MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIK-YNATWYTAVP 260
+ V + F + +L LLS GA V + +A +I T A P
Sbjct: 137 LLAVTTISFDISVLELLLPLLS----GATVVIASAETVRDPERLARLIADERITIMQATP 192
Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
+++L E L + C P L+ + GA + Y TE T
Sbjct: 193 ATWRMLLAAGWRGRES----LTAL--CGGEALPRDLAERLLSTGAELWNMYGPTETTIWS 246
Query: 321 SSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
+ + P ++GRP+ ++ +LDE P G GE+ I G V +GY PE
Sbjct: 247 TCARV--TAADGPVTIGRPIANTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPEL 304
Query: 380 NKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
F+ F + TGD+ + DG L +GR + + G +I E++A L +
Sbjct: 305 TAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRA 364
Query: 432 HPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITN 490
HP +A AV V ++ G++ A ++P+ G+ D E + + + A+ VP +
Sbjct: 365 HPGVADAVV-VVREEGPGDQRLVAYVVPKAGAAPDAEALRAALRATLPAYMVPAAFVQLD 423
Query: 491 ELPKTASGKIQRR 503
ELP T +GK+ R+
Sbjct: 424 ELPLTPNGKVDRK 436
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-41
Identities = 130/496 (26%), Positives = 199/496 (40%), Gaps = 84/496 (16%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
V G LTY+ ++ R A+RL AAG+ V + + + V+ LAV++A A P
Sbjct: 19 VCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVP 78
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
L+ AY P+ + L D+ ++L+LT
Sbjct: 79 LDPAYPPERLAYILEDAGARLVLT------------------------------------ 102
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE--- 201
DP D+A ++TSG+T RPKGV + N AA + +V+ E
Sbjct: 103 --------------DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAG 148
Query: 202 ---SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
+ S L +F + L+ A A+ LP K T
Sbjct: 149 VLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD-----------LPAKAEVTLINT 197
Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL-EEAFGAPVLEAYAMTEAT 317
VP+ + +L RH A P +R + L ++ RL V Y +E T
Sbjct: 198 VPSAARELL-RHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDT 252
Query: 318 HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
+ + P S+GRP+ G + +LD P G GE+ I G V +GY
Sbjct: 253 TYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGR 311
Query: 377 PEANKSAFLFGWFH---------TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
PE FL F TGD+ +DG L +GRI + + G +I E++A
Sbjct: 312 PELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEA 371
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVF 487
L S P +A+AV + D ++ I+ G+ ID E++ + A+ VP R
Sbjct: 372 ALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIEDLRARLATRLPAYMVPSRFV 431
Query: 488 ITNELPKTASGKIQRR 503
+ LP T +GKI R+
Sbjct: 432 RLDALPLTPNGKIDRK 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 6e-41
Identities = 125/477 (26%), Positives = 209/477 (43%), Gaps = 36/477 (7%)
Query: 31 LTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
LTY E V + A+ L N +A+ N +EF+ +F A T PL+ +
Sbjct: 27 LTYKDWFESVCKVANWLNEKESKN--KTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKW 84
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSELTLSLAHSES 148
DE + L+ S + +++T KLN + +++ D +
Sbjct: 85 KQDELKERLAISNADMIVT----------ERYKLNDLPDEEGRVIEIDE--WKRMIEKYL 132
Query: 149 DTNAISKLTNDPSDVALFL-HTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
T A + + ++ TSG+T +PK Q + S + + DS +I
Sbjct: 133 PTYAP---IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLI 189
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267
L H L G +S+ G V L +F + + N + VPT+ L
Sbjct: 190 AGTLVHSL-FLYGAISTLYVGQTVHL--MRKFIPNQVLDKLETENISVMYTVPTM----L 242
Query: 268 DRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLP 326
+ + + K++ I S A +++ F A + E Y +E + + +
Sbjct: 243 ESLYKENRVIENKMKIISS-GAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-- 299
Query: 327 EDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL 385
E+ +P SVGRP ++ I +E G + G G V ++ P GY +
Sbjct: 300 EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNA 359
Query: 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445
GW D+GY D +G++++VGR K +I GG I P E+++VL HP + + V GVPD
Sbjct: 360 DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPD 419
Query: 446 DKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
+G E AII +GS ++++ FC + +++FK+PK +E+P T SGKI R
Sbjct: 420 SYWG-EKPVAII--KGSA-TKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIAR 472
|
Length = 487 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 7e-41
Identities = 132/478 (27%), Positives = 198/478 (41%), Gaps = 63/478 (13%)
Query: 32 TYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TY + + R A LV G+ G+ V L NT V +LAV++A A
Sbjct: 62 TYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLR 121
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E + + I+HA D LT +
Sbjct: 122 AKELTTIVDKAR----------------------ITHALC-----DKRLTAA-------- 146
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKG-VPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
DVAL TSGTT PKG + ++ LA + + V + T D +
Sbjct: 147 ----------DDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSP 196
Query: 210 PLFHVHGMLAGLLSSFAAGA-AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
PL G+ +L GA AV L A + + + ++ AT PT ++ +L
Sbjct: 197 PLAFTFGLGGLVLFPLRFGASAVLLEQA---TPPLLLKAIQEHRATILFTAPTAYRAMLI 253
Query: 269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED 328
LR S +L + E G +++ TE H+ S +
Sbjct: 254 ---KVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISA---NE 307
Query: 329 GPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
KPG+ G+PV G E I+D+ G G G + +RGP + Y ++ + G
Sbjct: 308 ENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPTGCR-YLDDER-QQEYVRDG 365
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
W TGDI D DGY H V R ++I G I+ EV+ LL+HPD+A+ GVPD++
Sbjct: 366 WNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEE 425
Query: 448 YGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
G+ + I+ R+G+ E E + F K +A +K P+ + + LPKT +GKIQR
Sbjct: 426 RGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQR 483
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 2e-40
Identities = 138/523 (26%), Positives = 233/523 (44%), Gaps = 40/523 (7%)
Query: 11 NQVIDQFSSKRALS----------VSGKFD---LTYSRIHELVERAASRLV-AAGINAGD 56
+ V+DQ++ K V+GK D ++ + L +AA+ L A G+ GD
Sbjct: 9 SDVLDQWADKEKAGKRPPNPALWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGD 68
Query: 57 VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA 116
VA+ P E+ ++ +A IR P T + + L S++K ++T E A
Sbjct: 69 RVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPAV 128
Query: 117 QAAASKLNISHATATLLDADSE---LTL-SLAHSESDT-NAISKLTNDPSDVALFLHTSG 171
+ AS+ S T L+ S L L S + + +P A++ TSG
Sbjct: 129 DSIASECP-SLKTKLLVSEHSRDGWLNFKELLKEASTEHTCVKTKSQEPM--AIYF-TSG 184
Query: 172 TTSRPKGVPLTQNNLA-ASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230
TT PK + ++L N + LT SD + + + L S + GA
Sbjct: 185 TTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGAC 244
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290
V + RF Q + KY T + + PT++++++ + + + + LR +
Sbjct: 245 VFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTSYK--FKSLRHCVTGGEP 302
Query: 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE 349
L P +L + + G + E Y TE T L+ +N KPGS+G+ ++ I+D+
Sbjct: 303 LNPEVLEQWKAQTGLDLYEGYGQTE-TGLICANFKGMK--IKPGSMGKASPPYDVQIIDD 359
Query: 350 IGVPQEGGAKGEVCIR-GPN----VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLH 404
G G +G++ IR P + Y +NPE + ++ TGD G D DGY
Sbjct: 360 NGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMDEDGYFW 419
Query: 405 LVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII---PREG 461
VGR ++IN G +I P EV++ L+ HP + ++ PD GE + ++
Sbjct: 420 FVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLS 479
Query: 462 SNIDE--EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR 502
+ ++ +E+ K A +K P++V ELPKT +GKI+R
Sbjct: 480 HDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKR 522
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-40
Identities = 141/486 (29%), Positives = 221/486 (45%), Gaps = 31/486 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y ++ + A L AG+ GDVVAL N+ E +++ A +R+ +N T
Sbjct: 25 VSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E ++ + DS +++L+ A + A + L + + +D +LA
Sbjct: 85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALA------ 138
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGV--PLTQNNLAAS----VSNIKSVYKLTESDS 204
A +LT P A+ L++SGTT PKG+ L ++ A V+ ++ Y ++ESD
Sbjct: 139 GAGPRLTEQPCG-AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDI 197
Query: 205 TVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPT-- 261
P++H + ++ A G V L A RF A + +Y T VPT
Sbjct: 198 YYSSAPIYHAAPLRWCSMVH--ALGGTVVL--AKRFDAQATLGHVERYRITVTQMVPTMF 253
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
+ + LD V V LR + +A + + + G V E Y+ TEA H M+
Sbjct: 254 VRLLKLDADVRTRYDV-SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEA-HGMT 311
Query: 322 SNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE--- 378
P+ H PGSVGR V ++ I D+ G G G V + Y N+PE
Sbjct: 312 FIDSPDWLAH-PGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTA 370
Query: 379 -ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
A A F W GD+G D DGYL+L R +I GG I P E + L HP +
Sbjct: 371 AAQHPAHPF-WTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHD 429
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPK 494
GVPD + GE++ I EG +E E++ + + +A +K P+ V +ELP+
Sbjct: 430 VAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPR 489
Query: 495 TASGKI 500
T +GK+
Sbjct: 490 TPTGKL 495
|
Length = 501 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 1e-39
Identities = 107/364 (29%), Positives = 156/364 (42%), Gaps = 33/364 (9%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
P D A + +SG+ PKGV L+ +N+ +++ I V+ L D + LP FH G+
Sbjct: 780 KPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLT 839
Query: 219 AGL---LSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIVLDRHVAKP 274
L L P A ++ K+ AT PT ++ L P
Sbjct: 840 VTLWLPLLEGIKVVYHPDPTDALGIA-----KLVAKHRATILLGTPTFLRLYLRNKKLHP 894
Query: 275 EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLP-----EDG 329
++ LR + + + L P + EE FG +LE Y TE + + S N LP +
Sbjct: 895 L-MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN-LPDVLAADFK 952
Query: 330 PH---KPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA- 383
K GSVG P+ G + I+D E G G + I GP V KGY +PE
Sbjct: 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVI 1012
Query: 384 ---FLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD---AVLLSHPDIAQ 437
GW+ TGD G+ D DG+L + R GGE + V+ A L ++
Sbjct: 1013 KDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVF 1072
Query: 438 AVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK-NVAAFKVPKRVFITNELPKTA 496
AV VPD+K GE++ ++ D EE+ R K+ + P R F LP
Sbjct: 1073 AVT-AVPDEKKGEKL---VVLHTCGAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLG 1128
Query: 497 SGKI 500
SGK+
Sbjct: 1129 SGKL 1132
|
Length = 1146 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 152 bits (384), Expect = 1e-39
Identities = 112/440 (25%), Positives = 178/440 (40%), Gaps = 36/440 (8%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
T+ L + AL V G LTY+ + R A L++ G+ G+ VA+
Sbjct: 228 TIHLLFEEQAATTPDAVAL-VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADR 286
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
++E V+ LAV++A A PL+ Y + + L DS LLLT QA +
Sbjct: 287 SLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT--------QAHLRVDD 338
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
+ L DA SE+ + +A ++TSG+T +PKGV +
Sbjct: 339 VGLPGLALDDALSEIPDT---------DPIPQALLGDALAYIIYTSGSTGQPKGVRIEHR 389
Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPL------FHVHGMLAGLLSSFAAGAAVTLPAAGR 238
LA +++ + + L D VL L V + LL V PA +
Sbjct: 390 ALANLLNDAGARFGLDADD---RVLALASLSFDASVFEIFGALLE---GARLVLAPALLQ 443
Query: 239 FSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
+ + + T VP + ++L +LR + S +L ++
Sbjct: 444 VDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQ 503
Query: 298 RLEEAFGAP--VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQ 354
RL + +L Y TEAT S P+ + + +GRPV ++ ILD+ P
Sbjct: 504 RLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRV-PIGRPVANTQLYILDQGLRPL 562
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELI 413
G GE+ I G + GY N P+ F+ + TGD+ +DG L +GR +
Sbjct: 563 PLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQV 622
Query: 414 NRGGEKISPIEVDAVLLSHP 433
G +I E++A L P
Sbjct: 623 KIRGFRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 3e-39
Identities = 124/483 (25%), Positives = 201/483 (41%), Gaps = 41/483 (8%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y + E A RL G+ G V + N FV AV A P++ +
Sbjct: 61 LSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFR 120
Query: 91 PDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
D L ++ E A A + I ATA ++ ++
Sbjct: 121 SDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGAEESGGRPAVA------- 173
Query: 150 TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT---QNNLAASVSNIKSVYKLTESDSTV 206
P + L TSGTT +PKGVP ++ + V+ + +L
Sbjct: 174 ---------APGRIVLL--TSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGSRIS 221
Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
+ +P+FH G+ +L+ G +T F A + A +TAVP +V
Sbjct: 222 VAMPMFHGLGLGMLMLTIALGGTVLT---HRHFDAEAALAQASLHRADAFTAVP----VV 274
Query: 267 LDRHVAKPEPV-----YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
L R + P V P+LR + S L P + R + +G + Y TE +
Sbjct: 275 LARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IG 332
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
+ P D P +VG+PV G + ILD P G + + G Y +
Sbjct: 333 ALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTD---GG 389
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
A + G TGD+GY D+ G L +VGR ++I GGE + P V+ L +HP +A
Sbjct: 390 GKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAV 449
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
GVPD+++G + ++ GS +D ++ + K V+ F+ P+ + I + +P+ +GK+
Sbjct: 450 IGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKV 509
Query: 501 QRR 503
R+
Sbjct: 510 LRK 512
|
Length = 516 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 103/376 (27%), Positives = 164/376 (43%), Gaps = 47/376 (12%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASV-----------SNIKSVYKLTESDSTVIV 208
+D L+T GTT PKGV Q ++ + + + ++ +
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 209 L---PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
L PL H G L + FA G V LP +F W+ + K+ I
Sbjct: 62 LPACPLMHGAGQWLALSALFAGGTVVLLPDD-KFDPDRVWRTVEKHRVN-------TLVI 113
Query: 266 VLDRHVAKP-------EPVY--PKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
V D A+P Y LR I S A +P + L E +++A +E
Sbjct: 114 VGDA-FARPLLEALEAAGRYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASE 172
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI-RGPNVTKGY 373
SS + G + G+ G + +LDE G G+ I RG V GY
Sbjct: 173 TGGGGSS--VSRAGG--ASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLGY 228
Query: 374 KNNPEANKSAFLF------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
+PE K+A F + GD ++DG + L+GR IN GGEK+ P EV+
Sbjct: 229 YKDPE--KTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEE 286
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVF 487
L +HPD+A A+ GVPD+++G+ + + R G+ +D E+ C++++A +K+P+ +
Sbjct: 287 ALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYKLPRAIV 346
Query: 488 ITNELPKTASGKIQRR 503
+ + +P+ SGK R
Sbjct: 347 VVDTVPRAPSGKADYR 362
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 130/516 (25%), Positives = 211/516 (40%), Gaps = 65/516 (12%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y+ ++ R A A G+ GDVVAL N E++ +L + + A A LN
Sbjct: 63 ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQR 122
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-----------ATATLLDADSEL 139
L+ ++K L+ E A + A + L D +
Sbjct: 123 GAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAA 182
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
+ + + + ++ D A +++TSGTT PK ++ ++ + +L
Sbjct: 183 AGAPTTNPASRSGVT-----AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL 237
Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
T D LPL+H G S AAGA + L +FSAS FW D+ +Y AT + +
Sbjct: 238 TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL--RRKFSASRFWDDVRRYRATAFQYI 295
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATH 318
+ + +L+ KP +LR + L P I ++ FG P +LE YA +E
Sbjct: 296 GELCRYLLN-QPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGN- 351
Query: 319 LMSSNPLPEDGPHKPGSVGR---PVGQEIAILD---EIGVPQEGG-------AKGEV--C 363
+ G+VGR + AI+ + G P GEV
Sbjct: 352 ---VGFINVFN--FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLL 406
Query: 364 I-----RGPNVTKGYKNNPEANKS-----AFLFG--WFHTGDIGYFDSDGYLHLVGRIKE 411
I RGP GY +PEA++ F G WF+TGD+ D G+ V R+ +
Sbjct: 407 IGRITDRGP--FDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGD 463
Query: 412 LINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP----DDKYGEEINCAIIPREGSNIDEE 467
GE ++ EV+ L P + +AV +GV D + G AI+ +G+ D
Sbjct: 464 TFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGM---AAIVLADGAEFDLA 520
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + + A+ VP V + EL T + K ++
Sbjct: 521 ALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKV 556
|
Length = 600 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 4e-37
Identities = 112/416 (26%), Positives = 169/416 (40%), Gaps = 76/416 (18%)
Query: 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLF 212
L + P D+A +SG+T PKGV LT NL ++ I ++T D + +PL
Sbjct: 98 RDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLT 157
Query: 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF------WQDMI-KYNATWYTAVPTI-HQ 264
H G++ L+ A G L F W D ++ AT + P ++
Sbjct: 158 HDMGLIGFHLTPTALGINQYL-----MPTRLFIRRPLLWLDKASQHRAT-ILSSPNFGYK 211
Query: 265 IVLDRHVAKPEPVYP-KLRFIR-------SCSASLAPVILSRLEEAFGAP---VLEAYAM 313
+L K E + L +R SA L L ++ FG + Y +
Sbjct: 212 YLLKH--FKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMA-PFGLRPNAMYPVYGL 268
Query: 314 TEAT--------------------HLMSSNPLPEDGPHKPGS-----VGRPVGQ-EIAIL 347
EAT HL + E P + VG P+ EI I+
Sbjct: 269 AEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV 328
Query: 348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLV 406
D+ G G + I+G NVT GY NNPEA K + GW TGD+G+ +G L +
Sbjct: 329 DDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVIT 387
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDI--AQAVAFGVPDDKYG-EEINCAIIPREGSN 463
GR K++I G+ P +++ V I + A GV D+K EE+ + R+ +
Sbjct: 388 GRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQ--S 445
Query: 464 IDE---------EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510
+D+ V + N+ V +PKT SGKIQR +++ FL
Sbjct: 446 LDDFTPLALKIKRHVNKKMGLNI------DHVIPVRSIPKTTSGKIQRYKLAQQFL 495
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 9e-36
Identities = 133/511 (26%), Positives = 221/511 (43%), Gaps = 47/511 (9%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
Q + AL V G+ L+Y+ ++ R A L+AAG+ +V + ++E V+ LAV
Sbjct: 524 QHPERPAL-VFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAV 582
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
++A PL+ Y D + L DS +LLLT + A A + LD
Sbjct: 583 LKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAG------LRSLCLDE 636
Query: 136 DSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS 195
++L + + DP ++A ++TSG+T +PKGV ++ LA V I
Sbjct: 637 PADLLCGYSGHNPEVAL------DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAE 690
Query: 196 VYKLTESDSTVIVLPL-FHV-HGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYN 252
+L DS ++V F + L G L A+GA + L P A F M
Sbjct: 691 RLQLAADDSMLMVSTFAFDLGVTELFGAL---ASGATLHLLPPDCARDAEAFAALMADQG 747
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRL--EEAFGAPVLEA 310
T VP+ Q +L ++ P+ + C V L GA ++
Sbjct: 748 VTVLKIVPSHLQALLQ--ASRVALPRPQRALV--CGGEALQVDLLARVRALGPGARLINH 803
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIR 365
Y TE T +S+ L ++ P+GQ +A ILD P G GE+ I
Sbjct: 804 YGPTETTVGVSTYELSDEERDFGNV---PIGQPLANLGLYILDHYLNPVPVGVVGELYIG 860
Query: 366 GPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
G + +GY P F+ FG + TGD+ + +DG + +GR+ + G
Sbjct: 861 GAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRG 920
Query: 418 EKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE-----EEVLRF 472
+I E++A LL+ P + +AV P D G ++ ++P ++ E +E+
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDA-GLQLVAYLVPAAVADGAEHQATRDELKAQ 979
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ + + VP + + + LP T +GK+ R+
Sbjct: 980 LRQVLPDYMVPAHLLLLDSLPLTPNGKLDRK 1010
|
Length = 3956 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-35
Identities = 111/423 (26%), Positives = 189/423 (44%), Gaps = 54/423 (12%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y ++ + V+ A +L A G+ +AL N++++VI LA ++A P+ ++
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ + L+D+ + LL++ A+A T E
Sbjct: 60 AQQTQHLLNDAGADLLISDDPDAASALH------------TPFATLGEDLYIA------- 100
Query: 151 NAISKLTND-PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL 209
S + P+ A +TSG+T +PKGV L+ L ++ + E + + +L
Sbjct: 101 LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLL 160
Query: 210 PLFHVHGMLAGLLSSFAAGAAVTLPA--------AGRFSASTFWQDMIKYNATWYTAVPT 261
PL + +AG+ + GA V L + + F + ++ VP
Sbjct: 161 PLATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQ 220
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
+ ++ P P LRF+ A ++P +L R A G PV E Y ++E ++S
Sbjct: 221 LLMALVAAVEQGPLPPES-LRFVAVGGARVSPSLLQR-ARALGLPVYEGYGLSECASVVS 278
Query: 322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
N P +PGSVG+P+ +++I ++ GE+ +RG ++ GY P A
Sbjct: 279 LN-TPGA--DRPGSVGKPLPHVQVSIAND----------GEILVRG-SLMLGYLGEPPAT 324
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL-INRGGEKISPIEVDAVLLSHPDIAQAV 439
W+ TGD+G+ D +GYL++ GR K L I G +SP V++ L P IAQAV
Sbjct: 325 DD-----WWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAV 379
Query: 440 AFG 442
FG
Sbjct: 380 VFG 382
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-34
Identities = 135/533 (25%), Positives = 208/533 (39%), Gaps = 86/533 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL----- 85
L Y + E A RL+A G+ GD VAL +FV F A A PL
Sbjct: 50 LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109
Query: 86 ---NAAYTPDEFEFYLSDSESKLLLTPAE----GNAAAQAAASKLNISHATATLLDA-DS 137
+Y + L+ ++ ++TP E N A +SHA L D
Sbjct: 110 FGGRESYI-AQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKALPEADV 168
Query: 138 ELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSV 196
L P D+A ++SG+T P+GV +T L A++ I
Sbjct: 169 ALP----------------RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDG 212
Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMIKYNATW 255
K+ D V LP +H G++ LL+ A +V F+ W D+I N
Sbjct: 213 LKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGT 272
Query: 256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSC--SASLA-----PVILSRLEEAFGAPV- 307
+ P + R V SC A + P +L + EAF AP
Sbjct: 273 ISYSPPFGYELCARRVN----SKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAF-APAG 327
Query: 308 ------LEAYAMTEATHLMSSNPL----------------------PEDGPHKPGSV--- 336
+ +Y + EAT +S +PL P + +
Sbjct: 328 FDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNC 387
Query: 337 GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395
G+ + G EI I +E G+P G +C+RGP++ GY + E+ GW TGD+G
Sbjct: 388 GKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLG 447
Query: 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ--AVAFGVPDDKYGEEIN 453
Y DGYL++ GR K+LI G I P +++ + P++ A AF + + E
Sbjct: 448 YL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQE--NGEKI 504
Query: 454 CAIIPREGSNIDEEEVLRFCKKNV--AAFKVPKRVFIT--NELPKTASGKIQR 502
++ S+ + L + + F V V + + LP+T+SGK+ R
Sbjct: 505 VLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSR 557
|
Length = 579 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-33
Identities = 117/497 (23%), Positives = 199/497 (40%), Gaps = 24/497 (4%)
Query: 27 GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
TY+ +++ R L A G+ GD VA N + + AV A N
Sbjct: 21 EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 80
Query: 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
+P E + L+ +E K+LL +A +L + + E L+ +
Sbjct: 81 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA 140
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
+ ++ +T+GTT PKGV + L V S+ V
Sbjct: 141 LGEEADPVRV--PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 198
Query: 207 IV--LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
++ +P+FHV+ ++ V ++ + T+ VPT+
Sbjct: 199 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRL--DPASLVELFDGEGVTFTAGVPTVWL 256
Query: 265 IVLD-RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS- 322
+ D LR + ++ AP L E G V + Y +TE + ++
Sbjct: 257 ALADYLESTGHR--LKTLRRLVVGGSA-APRSLIARFERMGVEVRQGYGLTETSPVVVQN 313
Query: 323 ------NPLPEDGPHKPGSVG--RPVGQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKG 372
L E+ + + + D VP++G A GEV ++GP +T G
Sbjct: 314 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 373
Query: 373 YKNNPEANKS-AFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
Y N EA +S G+F TGDI +D +GY+ + R+K+LI GGE IS ++++ L+
Sbjct: 374 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 433
Query: 432 HPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK-VPKRVFITN 490
HP + +A +P K+ E A++ G EE+ K A +P
Sbjct: 434 HPKVKEAAVVAIPHPKWQERP-LAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAE 492
Query: 491 ELPKTASGKIQRRIVSE 507
E+P+T++GK +R + E
Sbjct: 493 EIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 4e-33
Identities = 125/510 (24%), Positives = 194/510 (38%), Gaps = 97/510 (19%)
Query: 32 TYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
TYS ++LV R A L + +GD VA+ N+ EFV ++LA+ A A +N +
Sbjct: 7 TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLS 66
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
D L S +K ++
Sbjct: 67 GDPLIHCLKISGAKFVIV------------------------------------------ 84
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
DP D A ++TSGTT PKG ++ + + + L D T +P
Sbjct: 85 --------DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMP 136
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
L+H GL +G + L + +FSAS FW+D+ AT V + + +L
Sbjct: 137 LYHGTAAFLGLCYCLGSGGTLCL--SRKFSASQFWKDVRDSEATIIQYVGELCRYLLA-- 192
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTEATHLMSSNPLPEDG 329
P P + + L P I R E F P + E YA TE +++ G
Sbjct: 193 -TPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNH---NVG 248
Query: 330 PHKPGSVGR--------------PVGQEIAILDEIGVPQEG-------GAKGEVCIRGPN 368
P G++G V + I P+ G G GE+ R
Sbjct: 249 PFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRF 308
Query: 369 VTK----GYKNNPEANKSAFLFG-------WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
+ GY N +A +S L W+ TGD+ D+DG + + R+ +
Sbjct: 309 KNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKS 368
Query: 418 EKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL-----RF 472
E +S EV VL + P +A+A +GV Y CA I E S+ E E +
Sbjct: 369 ENVSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAGCAAITLEESSAVETEFTKNLLAKL 428
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQR 502
+K + ++ VP + +T E+ T + K Q+
Sbjct: 429 ARKRLPSYAVPLFLRLTEEVATTGNHKQQK 458
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 1e-32
Identities = 117/531 (22%), Positives = 208/531 (39%), Gaps = 66/531 (12%)
Query: 9 LLNQVIDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
++Q++ + + +V+ FD LTY+ ++ R A L+A G+ +V + +
Sbjct: 4552 CVHQLVAERARMTPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERS 4611
Query: 66 VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI 125
E ++ LAV++A PL+ Y + + + DS + LLLT
Sbjct: 4612 AEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQ---------------- 4655
Query: 126 SHATATLLDADSELTLSLAHSE-----SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SH L D +L+L E + +L P ++A ++TSG+T RPKGV
Sbjct: 4656 SHLLQRLPIPDGLASLALDRDEDWEGFPAHDPAVRL--HPDNLAYVIYTSGSTGRPKGVA 4713
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240
++ +L + Y+LT D V+ F G GL GA+V + +
Sbjct: 4714 VSHGSLVNHLHATGERYELTPDDR-VLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWD 4772
Query: 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSR-L 299
+ ++ ++ T P Q + + EP P LR ++A
Sbjct: 4773 PERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEP--PSLRVYCFGGEAVAQASYDLAW 4830
Query: 300 EEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQ 354
+ Y TE T + + G+ P+G + +LD P
Sbjct: 4831 RALKPVYLFNGYGPTETTVTVLLWKARDGDA--CGAAYMPIGTPLGNRSGYVLDGQLNPL 4888
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLV 406
G GE+ + G V +GY P F+ FG + TGD+ + +DG + +
Sbjct: 4889 PVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYL 4948
Query: 407 GRIKELINRGGEKISPIEVDAVLLSHPDI-------------AQAVAFGVPDDKYGEEIN 453
GR+ + G +I E++A L HP + Q V + VP D
Sbjct: 4949 GRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDP------ 5002
Query: 454 CAIIPREGSNIDEEEVLR-FCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
A+ + + + + L+ ++ + + VP + +P T +GK+ R+
Sbjct: 5003 -ALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRK 5052
|
Length = 5163 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 138/533 (25%), Positives = 212/533 (39%), Gaps = 77/533 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTYS + + V + A+ L G+ GD V + P +E I LA R A + + A ++
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL----LDADSELTL--SLA 144
+ + D + K+++T + K + A + LT LA
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240
Query: 145 HSESDT-----------NAISKLTN-------DPSDVALFLHTSGTTSRPKGVPLTQNN- 185
DT + + D D L+TSG+T +PKGV T
Sbjct: 241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 300
Query: 186 LAASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAV 231
+ + + K + +D S V P ML G GA
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP------MLNGATVLVFEGAP- 353
Query: 232 TLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQIVLD------RHVAKPEPVYPKLRFI 284
P +GR W + KY T +YTA + ++ D RH K LR +
Sbjct: 354 NYPDSGRC-----WDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRK------SLRVL 402
Query: 285 RSCSASLAPVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
S + P G P+ + + TE M + PLP P KPGS P
Sbjct: 403 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT-PLPGAWPQKPGSATFPFF 461
Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFL---FGWFHTGDIG 395
G + I+DE G EG G +C++ P + + E ++ + G++ +GD
Sbjct: 462 GVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGC 521
Query: 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA 455
D DGY L GR+ ++IN G +I EV++ L+SHP A+A G+ + G+ I
Sbjct: 522 SRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAF 581
Query: 456 IIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505
+ EG EE ++ + + AF P ++ LPKT SGKI RRI+
Sbjct: 582 VTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 634
|
Length = 666 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-32
Identities = 110/490 (22%), Positives = 173/490 (35%), Gaps = 81/490 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LT+ + E +R A L A+GI GD V L P + + A+ + A ++
Sbjct: 3 LTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMG 62
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
G +A D+ + + A
Sbjct: 63 RKHL-----------------GRCLEEAEP---------------DAFIGIPKA------ 84
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
D A L TSG+T PKGV T AA + ++S+Y + E D + P
Sbjct: 85 ----------DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFP 134
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
F + G G+ + A+ A + Q + + A+ P + + V R+
Sbjct: 135 PFALFGPALGVTT---VIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVA-RY 190
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEA---THLMSSNPL 325
+ P LR + S A + P +L R A + Y TEA + L
Sbjct: 191 CEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVL 250
Query: 326 PED----GPHKPGSVGRPV-GQEIAI--LDEIGVPQEGGAK-------GEVCIRGPNVTK 371
E VG PV G ++ I +D+ + GE+ + GP+VT+
Sbjct: 251 AESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTR 310
Query: 372 GYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
Y N PEA K A + W GD+GYFD G L GR + G + + V+
Sbjct: 311 EYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQ 370
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPK--- 484
V HP + ++ GV K G + ++ +D + L + A
Sbjct: 371 VFNRHPGVRRSALVGV--GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQAPATVEI 428
Query: 485 -RVFITNELP 493
V I + P
Sbjct: 429 QAVLIHPQFP 438
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-32
Identities = 125/513 (24%), Positives = 208/513 (40%), Gaps = 41/513 (7%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
V G L+Y+ + R A RL A G+ VA+ + E V+ LAV++A P
Sbjct: 2023 VFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDADSELTLSL 143
L+ Y + + L DS + LLLT + +L + A L LD D+E
Sbjct: 2083 LDPNYPAERLAYMLEDSGAALLLT-------QRHLLERLPLPAGVARLPLDRDAEWA--- 2132
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD 203
DT +L ++A ++TSG+T PKGV ++ L A Y+L+ +D
Sbjct: 2133 --DYPDTAPAVQL--AGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPAD 2188
Query: 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIH 263
+ F G GA V + + + +M ++ T P
Sbjct: 2189 -CELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247
Query: 264 QIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPV--LEAYAMTEATHLMS 321
Q + + A+ + P +R + P RL PV Y TEA
Sbjct: 2248 QQLAE--HAERDGRPPAVR-VYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAV---- 2300
Query: 322 SNPLPED-GPHKP-GSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
PL P P G+ P+G+ + ILD G GE+ + G + +GY
Sbjct: 2301 VTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYL 2360
Query: 375 NNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
N P F+ F + TGD+ + +DG + +GRI + G +I E++
Sbjct: 2361 NRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIE 2420
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRV 486
A L +HP + +AV D G+++ ++P + + E+ + + A+ VP
Sbjct: 2421 ARLQAHPAVREAVVVAQ-DGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHW 2479
Query: 487 FITNELPKTASGKIQRRIVSEHFLAQVSAAKVP 519
+ LP +GK+ R+ + + ++Q+ A V
Sbjct: 2480 VVLERLPLNPNGKLDRKALPKPDVSQLRQAYVA 2512
|
Length = 5163 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 7e-32
Identities = 136/538 (25%), Positives = 203/538 (37%), Gaps = 85/538 (15%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
T+ +HE R A L AAG+ GD VA+ VE + A L + P
Sbjct: 31 TWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMR---GASLTMLHQP 87
Query: 92 ----------DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
++ + +K ++ AAA K A LL AD
Sbjct: 88 TPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAAD----- 142
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT- 200
I + D+AL TSG+T PK V +T NL A+ + +
Sbjct: 143 ----------PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDV 192
Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNATWYTA 258
E+D V LPLFH GM+ L GA + F W ++I KY T TA
Sbjct: 193 ETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGT-MTA 251
Query: 259 VPTIHQIVLDRHVAKPEPVY----PKLRFIRSCSASLAPVILSRLEEAFGAP-------V 307
P +L R + + LRF + + + P + L +A GA +
Sbjct: 252 APNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDA-GARFGLRPEAI 310
Query: 308 LEAYAMTEATHLMSSNPLPE----DGPH--------------KPG-----SVGRPV-GQE 343
L AY M EAT +S +P D K ++G P+ G E
Sbjct: 311 LPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLE 370
Query: 344 IAILDEIGVPQEGGAKGEVCIRGPNVTKGYK--NNPEANKSAFLFGWFHTGDIGYFDSDG 401
+ ++DE G G + +RG +VT GY + + A GW TGD+GY +G
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDA--DGWLDTGDLGYLTEEG 428
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI--AQAVAFGVPDDKYGEEINCAIIPR 459
+ + GR+K++I G I P +++ + AVA + E A+
Sbjct: 429 EVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESN 488
Query: 460 EGSNIDEEEVLRFCKKNVAAFKV------PKRVFI--TNELPKTASGKIQRRIVSEHF 509
+ E +R VA V P+ V + +PKT SGK++R +E
Sbjct: 489 AFEDPAEVRRIR---HQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELV 543
|
Length = 545 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-31
Identities = 115/488 (23%), Positives = 200/488 (40%), Gaps = 41/488 (8%)
Query: 27 GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
G+ L+Y+ ++ R A RL+ G+ +V + ++E V+ LA+++A PL+
Sbjct: 3079 GEQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLD 3138
Query: 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
Y + + L DS ++LLL+ + L LD E + A+
Sbjct: 3139 PEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVL--------DLDRGDE-NYAEANP 3189
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
T P ++A ++TSG+T +PKGV + + L+ + ++ Y L D V
Sbjct: 3190 AIRT--------MPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGD-RV 3240
Query: 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI-KYNATWYTAVPTIHQI 265
+ F + L +GA V L + ++I A P++ Q
Sbjct: 3241 LQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQA 3300
Query: 266 VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNP 324
L+ E + ++ + ++ F G P+ Y TEAT ++
Sbjct: 3301 FLE------EEDAHRCTSLKRIVCGGEALPADLQQQVFAGLPLYNLYGPTEATITVTHWQ 3354
Query: 325 LPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSA 383
E+G +GRP+ ILD P GA GE+ + G + +GY N P
Sbjct: 3355 CVEEGKDAV-PIGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAER 3413
Query: 384 FLFGWF-------HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA 436
F+ F TGD+ + +DG + +GR+ + G +I E++A LL HP +
Sbjct: 3414 FVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVR 3473
Query: 437 QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR-FCKKNVAAFKVPKRVFITNELPKT 495
+AV V + A + E D E L+ K ++ + VP + +P T
Sbjct: 3474 EAVVLAVDGRQL-----VAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFLERMPLT 3528
Query: 496 ASGKIQRR 503
+GK+ R+
Sbjct: 3529 PNGKLDRK 3536
|
Length = 5163 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-31
Identities = 122/477 (25%), Positives = 197/477 (41%), Gaps = 77/477 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY S LV GI G V L F N E++I+ A + PL
Sbjct: 79 MTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLG 138
Query: 91 PDEFEFYLSDSE-SKLLLTPAEGNAA----AQAAASKLN--ISHATATL--LDADSE--- 138
PD +F ++ +E + + P N ++ + +L + A L L + +
Sbjct: 139 PDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEI 198
Query: 139 LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
+T S ++ ++ P DVA +TSGTT PKGV LT NL A+V+ K
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258
Query: 199 LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF--WQDMIKYNATWY 256
SD + LPL H++ + ++ G AV G + D+ T +
Sbjct: 259 FYPSDVHISYLPLAHIYERVNQIVMLHY-GVAV-----GFYQGDNLKLMDDLAALRPTIF 312
Query: 257 TAVPTIHQIVLDR----------------HVA------------KPEPVYPKL------- 281
+VP ++ + D + A P P++ +L
Sbjct: 313 CSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKA 372
Query: 282 ------RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
RF+ S ++ L+P ++ L FG VLE Y MTE + ++S ++G + G
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM---DEGDNLSGH 429
Query: 336 VGRPVGQ-EIAILDEIGVPQEGGA-------KGEVCIRGPNVTKGYKNNPEANKSAF-LF 386
VG P E+ ++D VP+ +GE+C+RGP + KGY + +
Sbjct: 430 VGSPNPACEVKLVD---VPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDED 486
Query: 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRG-GEKISPIEVDAVLLSHPDIAQAVAFG 442
GW HTGDIG + G L ++ R K + GE I+P +++ V +AQ +G
Sbjct: 487 GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG 543
|
Length = 651 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-30
Identities = 123/513 (23%), Positives = 205/513 (39%), Gaps = 63/513 (12%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
V G+ +LTY ++ R A RL+A G+ +V + ++E V+ LA+++A P
Sbjct: 1594 VFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVP 1653
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA---AASKLNISHATATLLDADSELTL 141
L+ Y + + + DS +LLLT + QA L +LD + +
Sbjct: 1654 LDPEYPRERLAYMIEDSGIELLLT----QSHLQARLPLPDGLRS-----LVLDQEDDWL- 1703
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
SD+N L P ++A ++TSG+T RPKG L + + Y+L+
Sbjct: 1704 ---EGYSDSNPAVNL--APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA 1758
Query: 202 SDSTVIVLPL---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA 258
+D + V + L++ A + P A R Q + + T
Sbjct: 1759 ADVVLQFTSFAFDVSVWELFWPLIN--GARLVIAPPGAHR-DPEQLIQLIERQQVTTLHF 1815
Query: 259 VPTIHQ--IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTE 315
VP++ Q + +D V P LR + +L L E L Y TE
Sbjct: 1816 VPSMLQQLLQMDEQVEHP----LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871
Query: 316 A----THLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRG 366
TH E G P+GQ IA ILD P G GE+ + G
Sbjct: 1872 TAVDVTHWTCRRKDLE------GRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGG 1925
Query: 367 PNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGGE 418
+ +GY N P F+ FG + TGD+ + +DG + +GRI + G
Sbjct: 1926 VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGF 1985
Query: 419 KISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA 478
+I E++A L + +AV D G+++ ++P + +D++E + +
Sbjct: 1986 RIELGEIEARLREQGGVREAVVIAQ-DGANGKQLVAYVVPTDPGLVDDDEAQVALRAILK 2044
Query: 479 A--------FKVPKRVFITNELPKTASGKIQRR 503
+ VP + +P T +GK+ R+
Sbjct: 2045 NHLKASLPEYMVPAHLVFLARMPLTPNGKLDRK 2077
|
Length = 3956 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-30
Identities = 88/323 (27%), Positives = 140/323 (43%), Gaps = 35/323 (10%)
Query: 186 LAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW 245
L ASV + ++L + +S VLPL+HV G++ + S G V LP R +
Sbjct: 145 LTASVQGFQRYFQLQQVNS-FCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQEL 202
Query: 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL---APVILSRLEEA 302
+ + + VPT Q +L +++ L AP S LE+A
Sbjct: 203 P--PNPSDFFLSLVPTQLQRLLQLR----------PQWLAQFRTILLGGAPAWPSLLEQA 250
Query: 303 --FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAK 359
+ Y MTE T + P+D S G+ + +I I
Sbjct: 251 RQLQLRLAPTYGMTE-TASQIATLKPDDFLAGNNSSGQVLPHAQITI--------PANQT 301
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
G + I+ ++ GY ++ G F T D+GY D+ GYLH++GR + I GGE
Sbjct: 302 GNITIQAQSLALGYYPQILDSQ-----GIFETDDLGYLDAQGYLHILGRNSQKIITGGEN 356
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479
+ P EV+A +L+ + G+PD +GE + +P++ +I EE+ K ++
Sbjct: 357 VYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSP 415
Query: 480 FKVPKRVFITNELPKTASGKIQR 502
FK PK +LP+ GKI R
Sbjct: 416 FKQPKHWIPVPQLPRNPQGKINR 438
|
Length = 452 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 9e-30
Identities = 131/540 (24%), Positives = 208/540 (38%), Gaps = 78/540 (14%)
Query: 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
TL L+ Q + AL+ + + +Y + E V A+ L G+ GD VA+ P
Sbjct: 458 TTLSALVAQQAAKTPDAPALADAR-YQFSYREMREQVVALANLLRERGVKPGDSVAVALP 516
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
+V + A++ A A PL+ Y D + L D+ LL+T A Q
Sbjct: 517 RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLIT-----TADQL----- 566
Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
D +L + A + P A + TSG+T RPKGV + Q
Sbjct: 567 ------PRFADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
Query: 184 NNLAASVSNIKSVYKLTESDST---------VIVLPLFHVHGMLAGLLSSFAAGAAVTL- 233
+ + +++ Y LT D V V F F AGA + +
Sbjct: 621 TAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW----------PFIAGAKLVMA 670
Query: 234 -PAAGRFSASTFWQDMI-KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
P A R + Q +Y T VP++ L VA P R ASL
Sbjct: 671 EPEAHRDPLAM--QQFFAEYGVTTTHFVPSM----LAAFVASLTP-----EGARQSCASL 719
Query: 292 APVILS----------RLEEAFGAPVLEAYAMTEATHLMSSNPL-PEDGPHKPGS---VG 337
V S ++ GAP+ Y TEA +S P E+ GS +G
Sbjct: 720 RQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779
Query: 338 RPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF------- 389
PV + ILD P G G++ + G + +GY P+ S F+ F
Sbjct: 780 YPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMY 839
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA----FGVPD 445
TGD+ + DG + +GR + + G++I E+D + + PD+ QAV
Sbjct: 840 RTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAA 899
Query: 446 DKYGEEINCA--IIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
G+ ++ + G +D + ++ + VP + ++LP +A+GK+ R+
Sbjct: 900 ATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRK 959
|
Length = 1296 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-29
Identities = 113/491 (23%), Positives = 197/491 (40%), Gaps = 31/491 (6%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
V G L+Y+ ++ R A RL+A G+ +V + +VE ++ LAV++A P
Sbjct: 3115 VFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVP 3174
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
L+ Y + + + DS KLLLT A A A TA LD
Sbjct: 3175 LDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDRLDL------ 3222
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
+ S+ N +++ ++A ++TSG+T +PKGV + LA + I Y+L +D
Sbjct: 3223 NGYSENNPSTRV--MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDAND- 3279
Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
V++ F G L + G + + + WQ + + + P Q
Sbjct: 3280 RVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQ 3339
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSN 323
+ L ++ P +++ + Y TEA ++
Sbjct: 3340 QFAEDAGGAD---CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLW 3396
Query: 324 PLPEDGPHKPGSV--GRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
D + GRPV I +LD P G GE+ I G + +GY P
Sbjct: 3397 KCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLT 3456
Query: 381 KSAFLFGWFH--------TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
F+ F TGD+ + +DG + +GRI + G +I E++A LL H
Sbjct: 3457 AERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQH 3516
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNEL 492
P + +AV D G+++ ++P + E + ++ + VP ++ + +
Sbjct: 3517 PSVREAVVLAR-DGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAM 3575
Query: 493 PKTASGKIQRR 503
P +GK+ R+
Sbjct: 3576 PLGPNGKVDRK 3586
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 132/529 (24%), Positives = 218/529 (41%), Gaps = 58/529 (10%)
Query: 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
L LLN+ Q + AL V L Y+ +H R A L G+ VA+
Sbjct: 1130 QAWLPELLNEQARQTPERIAL-VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAA 1188
Query: 63 PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
+ + ++ LA+++A PL+ Y + + L+DS +LLLT
Sbjct: 1189 ERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ------------- 1235
Query: 123 LNISHATATLLDADSELTLSLA--HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
SH L A+ ++L H +S + L ++A ++TSG+T +PKGV
Sbjct: 1236 ---SHLLERLPQAEGVSAIALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVG 1292
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPL-FHVHGMLAGLLSSF---AAGAAVTLPAA 236
T LA + +++ Y L +SD + P+ F V + F G + L
Sbjct: 1293 NTHAALAERLQWMQATYALDDSDVLMQKAPISFDV-----SVWECFWPLITGCRLVLAGP 1347
Query: 237 GRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP---KLRFIRSCSASLA 292
G + + +Y T VP + Q+ +D EP+ LR + S +L
Sbjct: 1348 GEHRDPQRIAELVQQYGVTTLHFVPPLLQLFID------EPLAAACTSLRRLFSGGEALP 1401
Query: 293 PVILSRLEEAFGAPVLE-AYAMTEA----THLMSSNPLPEDGPHKPGSVGRPVGQEIA-I 346
+ +R+ + L Y TE TH EDG P +GRP+G + +
Sbjct: 1402 AELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQ---AEDGERSP--IGRPLGNVLCRV 1456
Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFD 398
LD G GE+CI G + +GY P F+ G + TGD ++
Sbjct: 1457 LDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516
Query: 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP 458
+DG L +GR+ + + G ++ P E+ A LL+ P +AQA V + G ++
Sbjct: 1517 ADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVL-VREGAAGAQLVGYYTG 1575
Query: 459 REGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
G + E + + + VP ++ +++P SGK+ RR + E
Sbjct: 1576 EAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPE 1624
|
Length = 4334 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 111/494 (22%), Positives = 192/494 (38%), Gaps = 41/494 (8%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84
G+ L Y+ ++ R A L+ G+ +V + ++E V+ LA+++A P
Sbjct: 531 AFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVP 590
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
L+ Y + + L DS +LLL+ KL ++ L L
Sbjct: 591 LDPEYPAERLAYMLEDSGVQLLLS-------QSHLGRKLPLAAGVQVLDLDRPAAWLE-G 642
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
+SE + +P ++A ++TSG+T +PKG L+ + ++ Y L D+
Sbjct: 643 YSEEN----PGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDT 698
Query: 205 TVIVLPL-FHV-HGMLAGLLSSFAAGAAVTLPAAG-RFSASTFWQDMIKYNATWYTAVPT 261
+ P F V L S GA + + A G + + + + VP+
Sbjct: 699 VLQKTPFSFDVSVWEFFWPLMS---GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPS 755
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG----APVLEAYAMTEAT 317
+ Q L R + CS P E+ F A + Y TEA
Sbjct: 756 MLQAFL--QDEDVASCTSLRRIV--CSGEALP--ADAQEQVFAKLPQAGLYNLYGPTEAA 809
Query: 318 HLMSSNPLPEDGPHKPGSVGRPVGQEIA-ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN 376
++ E+G +GRP+ ILD P G GE+ + G + +GY
Sbjct: 810 IDVTHWTCVEEGGDSV-PIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGR 868
Query: 377 PEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
P F+ F + TGD+ + +DG + GRI + G +I E++A L
Sbjct: 869 PGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARL 928
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT 489
L HP + +A V G+++ ++ E + ++ + VP +
Sbjct: 929 LEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLAL 984
Query: 490 NELPKTASGKIQRR 503
LP T +GK+ R+
Sbjct: 985 ERLPLTPNGKLDRK 998
|
Length = 5163 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 94/360 (26%), Positives = 150/360 (41%), Gaps = 44/360 (12%)
Query: 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG 220
DVAL + TSGTT PKG LT L AS +L ++ LP H+ G+
Sbjct: 35 DDVALVVATSGTTGTPKGAMLTAAALTASADATHD--RLGGPGQWLLALPAHHIAGLQV- 91
Query: 221 LLSSFAAGAA-VTLPAAGRFSASTFWQ--DMIKYNATWYTAVPTIHQIVLDRHVAKPEPV 277
L+ S AG+ V L + F + + + + + VP L + + P
Sbjct: 92 LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPM----QLAKALDDPAAT 147
Query: 278 YPKLRF--IRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335
+ +L A G V+ Y M+E + G
Sbjct: 148 AALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSG---------------GC 191
Query: 336 V--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTG 392
V G P+ G + + D G + + GP + KGY+N + + A GWF T
Sbjct: 192 VYDGVPLDGVRVRVED-----------GRIALGGPTLAKGYRNPVDPDPFAEP-GWFRTD 239
Query: 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEI 452
D+G D DG L ++GR + I+ GG + P V+A L +HP +A FG+PDD+ G+ +
Sbjct: 240 DLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298
Query: 453 NCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512
A++ G E + + + P+ + + +ELP+ GK+ RR + F +
Sbjct: 299 VAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE 358
|
Length = 358 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 8e-28
Identities = 117/542 (21%), Positives = 192/542 (35%), Gaps = 141/542 (26%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
AL ++ + LT+ ++ +++ A+ G+ G VAL N+ E ++ +LA+
Sbjct: 15 VRPQAIALRLNDE-VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA 135
++ A PLN + L + L + A L
Sbjct: 74 LQCGARVLPLNPQLP-----------QPLL-----------EELLPSLTLDFA----LVL 107
Query: 136 DSELTLSL--AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
+ E T S + + P +A TSG+T PK T AS +
Sbjct: 108 EGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGV 167
Query: 194 KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF-AAGAAVTLPAAGRFSASTFWQDMIKYN 252
S+ T DS ++ LPLFHV G G++ + AGA + + +
Sbjct: 168 LSLMPFTAQDSWLLSLPLFHVSGQ--GIVWRWLYAGATLVVRDKQPLEQA---------- 215
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS-ASLAPVILSRLEEAFGAPV---- 307
+ C+ ASL P L RL + P+
Sbjct: 216 -------------------------------LAGCTHASLVPTQLWRLLDNRSEPLSLKA 244
Query: 308 ---------------LEA--------YAMTEATHLMSSN--PLPEDGPHKPGSVGRPV-G 341
E Y +TE M+S DG G VG P+ G
Sbjct: 245 VLLGGAAIPVELTEQAEQQGIRCWCGYGLTE----MASTVCAKRADG--LAG-VGSPLPG 297
Query: 342 QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY----KNNPEANKSAFLFGWFHTGDIGYF 397
+E+ ++D GE+ +RG ++ GY + P N GWF T D G +
Sbjct: 298 REVKLVD-----------GEIWLRGASLALGYWRQGQLVPLVNDE----GWFATRDRGEW 342
Query: 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE----IN 453
+G L ++GR+ L GGE I P E++ V+ HP + Q V D ++G+ +
Sbjct: 343 Q-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVE 401
Query: 454 CAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513
S + + + +A F+ P ++ K KI R+ + E Q+
Sbjct: 402 SD------SEAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQL 455
Query: 514 SA 515
Sbjct: 456 GN 457
|
Length = 458 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 138/537 (25%), Positives = 227/537 (42%), Gaps = 88/537 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
T+ ++H+ V R A+ L + G+ GD V + P E LA R A + + +
Sbjct: 85 YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFA 144
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK--LN-----ISHATATLLDADSEL---- 139
+ D++ L+++ G+ + K L+ H +L D L
Sbjct: 145 SHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA 204
Query: 140 ----------TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN---- 185
TL H + +N+PS + L+TSGTT +PKGV Q +
Sbjct: 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYI---LYTSGTTGKPKGV---QRDTGGY 258
Query: 186 ---LAASVSNI-----KSVYKLTESD-------STVIVLPLFHVHGMLAGLLSSFAAGAA 230
LA S+ I + SD S ++ PL LAG+ + G
Sbjct: 259 AVALATSMDTIFGGKAGETF-FCASDIGWVVGHSYIVYAPL------LAGMATIMYEG-- 309
Query: 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSA- 289
LP R A +W+ + KY + PT + VL + +P + + S A
Sbjct: 310 --LPT--RPDAGIWWRIVEKYKVNRMFSAPTAIR-VLKKQ----DPALLRKHDLSSLRAL 360
Query: 290 SLAPVILSR-----LEEAFGAPVLEAYAMTEAT-HLMSSNPLPEDGPHKPGSVGRPV-GQ 342
LA L + EA G PV++ Y TE +++ ED P + GS G P+ G
Sbjct: 361 FLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGY 420
Query: 343 EIAILDEI-GVPQEGGAKGEVCIRGP----NVTKGYKNNPEANKSAF-LFG--WFHTGDI 394
+ +L+E+ G P KG + I GP + + ++ K+ + LFG + T D
Sbjct: 421 NVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480
Query: 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINC 454
G D+DGY ++GR ++IN G ++ E++ + SHP +A+ GV D G+
Sbjct: 481 GIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVA 540
Query: 455 AIIPREGSNID--------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++P++ ++ E+E++ + A P RV+ + LPKT SGK+ RR
Sbjct: 541 FVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRR 597
|
Length = 629 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 4e-27
Identities = 129/529 (24%), Positives = 211/529 (39%), Gaps = 72/529 (13%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY ++H V AS L A G+ GD V + P E V LA R A + + +
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143
Query: 91 PDEFEFYLSDSESKLLLTPAEG-------------NAAAQAAASK----LNISHATATLL 133
+ D+ KL+++ G +AA A L + A +
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR 203
Query: 134 -----DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN--- 185
D D L H ++ +N+PS L+TSGTT +PKGV
Sbjct: 204 LIPGRDVDYA-ALRTQHEDAQVPVEWLESNEPS---YILYTSGTTGKPKGVQRDVGGYAV 259
Query: 186 -LAASVSNIKSVYK----LTESDSTVIVLPLFHVHG-MLAGLLSSFAAGAAVTLPAAGRF 239
LA S+ I + + SD +V + V+ +LAG + G T P G
Sbjct: 260 ALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLP-TNPDPG-- 316
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK------LRFIRSCSASLAP 293
+W + +Y + PT +++ K + + + L ++ L
Sbjct: 317 ---VWWSIVERYGVRTMFSAPTAIRVL-----KKQDAAWLRKHDLSSLHWLFLAGEPLDE 368
Query: 294 VILSRLEEAFGAPVLEAYAMTEAT-HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEI- 350
+ + G PV++ Y TE +++ P + P K GS G P+ G + +LDE
Sbjct: 369 PTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEAT 428
Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF--------HTGDIGYFDSDGY 402
G P KG + + P + G + + + FL ++ + D G D DGY
Sbjct: 429 GRPCGPNEKGVLTVVPP-LPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGY 487
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS 462
++GR ++IN G ++ E++ + SHP +A+ GV D+ G+ I +E
Sbjct: 488 TFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESD 547
Query: 463 NID--------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ E ++ + + A P RV+ LPKT SGK+ RR
Sbjct: 548 SAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRR 596
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-27
Identities = 113/488 (23%), Positives = 205/488 (42%), Gaps = 45/488 (9%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL-NAAY 89
+T+ +IH+ R L G+++GD V L P++ + V + LA + AR A L N
Sbjct: 31 VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACL-ARGVMAFLANPEL 89
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
D+ ++E L++T + L + + +A ++ + +
Sbjct: 90 HRDDHALAARNTEPALVVT-----------SDALRDRFQPSRVAEAAELMSEAARVAPGG 138
Query: 150 TNAISKLTNDPSDVALF-LHTSGTTSRPKGVPLTQNNLAASVSNI-KSVYKLTESDSTVI 207
+ D + +TSGTT PK + V + + +LT D+ +
Sbjct: 139 YEPMG------GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLC 192
Query: 208 VLPLFHVHGMLAGLLSSFAAGAAV---TLPAAGRFSA--STFWQDMIKYNATWYTAVPTI 262
++ +G+ + A G + + P +A S + + Y VP
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLY------GVPNF 246
Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEATHLMS 321
V+D + + LR + S +L + RL E FG P+L+ TE
Sbjct: 247 FARVID---SCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFV 303
Query: 322 SNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEAN 380
SN + E + G++GR + EI ++ G G +G++ +RGP + KGY N P++
Sbjct: 304 SNRVDE---WRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP 360
Query: 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440
+ GW T D DSDG++ R + GG + P EV+ +++ +A+A
Sbjct: 361 VANE--GWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAV 418
Query: 441 FGVPDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTAS 497
V + + ++ G+ ID ++ R ++AFKVP R + + LP+T +
Sbjct: 419 VAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPN 478
Query: 498 GKIQRRIV 505
GK+ R +
Sbjct: 479 GKLVRGAL 486
|
Length = 705 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 4e-27
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 16/211 (7%)
Query: 306 PVLEAYAMTEAT--HLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEV 362
P+++ + TE T +++ PLP P KPGS RP+ G + A++DE G P EGG G +
Sbjct: 397 PIVDTWWQTE-TGGIMIT--PLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNL 453
Query: 363 CIRG--PNVTKGYKNNPEANK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
I+ P + + + E S F G + TGD D DGY + GR+ +++N
Sbjct: 454 VIKDPWPGMMRTIYGDHERFVKTYFSTFK-GMYFTGDGARRDEDGYYWITGRVDDVLNVS 512
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFC 473
G ++ E+++ L++HP +A+A G PDD G+ I + + G +E E+ +
Sbjct: 513 GHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWV 572
Query: 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRI 504
+K + P + LPKT SGKI RRI
Sbjct: 573 RKEIGPIAKPDVIQFAPGLPKTRSGKIMRRI 603
|
Length = 637 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 147/538 (27%), Positives = 227/538 (42%), Gaps = 93/538 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINA----GDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
L+Y +L RA R +AA + A GD L FP+ ++V F + A A P
Sbjct: 41 LSY---RDLDLRA--RTIAAALQARASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVP-- 93
Query: 87 AAYTPDEF-----EFYLS---DSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE 138
AY P+ E LS D+E +LLLT A+ + ++ A A L
Sbjct: 94 -AYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEE---LAAANAPELLCVDT 149
Query: 139 LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
L +LA + + P D+A +TSG+T+ PKGV ++ NL A+ I+ +
Sbjct: 150 LDPALAEAWQEPAL------QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFG 203
Query: 199 LTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNAT 254
+ + VIV LPL+H G++ GLL +G L + F W + I +Y T
Sbjct: 204 IDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT 263
Query: 255 WYTAVPTIHQIVLDRHVAKPEPVYPKL-----RFIRSCSASLAPVILSRLEEAFGA---- 305
+++ +R V+ E +L R S S + L R E F A
Sbjct: 264 ISGGPDFAYRLCSER-VS--ESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFD 320
Query: 306 --PVLEAYAMTEATHLMSSNPLPEDGPH-------------KPG------SVGRPV-GQE 343
+Y + EAT +S + P +PG S GR G
Sbjct: 321 PDSFFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHA 380
Query: 344 IAILDEIGVPQEG-----GAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWFHTGDI 394
+ I+D PQ GE+ GP++ GY NPEA+ F+ W TGD+
Sbjct: 381 VLIVD----PQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDL 436
Query: 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA---QAVAFGVPDDKYGEE 451
G F DG L + GR+K+++ G + P +++ + ++ + AF V GEE
Sbjct: 437 G-FLRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE 493
Query: 452 ---INCAIIPREGSNIDEEEVLRFCKKNVA-AFK-VPKRVFITN--ELPKTASGKIQR 502
I I + + +++ ++ VA A + P V + N LPKT+SGK+QR
Sbjct: 494 GIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQR 551
|
Length = 4334 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-26
Identities = 107/390 (27%), Positives = 157/390 (40%), Gaps = 71/390 (18%)
Query: 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM 217
DP D A+ L TSG+ PKGV L+ NL A+ + + + + D LP+FH G+
Sbjct: 790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL 849
Query: 218 LAGLLSSFAAGAAVTL---PAAGR--------------FSASTFWQDMIKYNATWYTAVP 260
GL+ +G V L P R F TF +Y
Sbjct: 850 TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY--------- 900
Query: 261 TIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320
A P LR++ + + + E FG +LE Y +TE ++
Sbjct: 901 -----------AHPYDFR-SLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVI 948
Query: 321 SSN-PLPEDGPH-KPGSVGRPVGQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGY--KN 375
+ N P+ H K G+VGR + L+ + G+ EGG + +RGPNV GY
Sbjct: 949 ALNTPM-----HNKAGTVGRLLPGIEYRLEPVPGID-EGG---RLFVRGPNVMLGYLRAE 999
Query: 376 NP---EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432
NP E GW+ TGDI D +G++ + GR K GE IS V+ L +
Sbjct: 1000 NPGVLEPPAD----GWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE-LAAE 1054
Query: 433 --PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA-FKVPKRVFIT 489
PD A +PD + GE I I+ S+ L K A+ VP +
Sbjct: 1055 LWPDALHAAV-SIPDARKGERI---ILLTTASDATRAAFLAHAKAAGASELMVPAEIITI 1110
Query: 490 NELPKTASGKIQ----RRIVSEHFLAQVSA 515
+E+P +GKI ++ E +A
Sbjct: 1111 DEIPLLGTGKIDYVAVTKLAEEAAAKPEAA 1140
|
Length = 1140 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-26
Identities = 126/525 (24%), Positives = 199/525 (37%), Gaps = 100/525 (19%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY + +E +AA + G+ V + N+ E+ I + I A A + +
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNS 68
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL------------------ 132
P+ ++ SE+ +L+ A+ L I L
Sbjct: 69 PEACQYVAETSEANILVVDN-----AKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLY 123
Query: 133 -LDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191
EL S+ + D I + P+ ++TSGTT PKGV L+ +N+ +
Sbjct: 124 SWKEFMELGRSIPDEQLD-AIIE--SQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAK 180
Query: 192 NIKSVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFS-ASTF-- 244
L +V LPL H+ + + + G V P A + + T
Sbjct: 181 AAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLRE 240
Query: 245 ------------W---QDMIKYN-----------ATWYTAVPTIHQIVLDR--------- 269
W Q+ +K A+W V + L
Sbjct: 241 VRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPPPMCF 300
Query: 270 HVAKP---EPVYPKLRFIR--SCSASLAPVILSRLEEAF---GAPVLEAYAMTEAT--HL 319
+AK + V L R AP I E F P++E Y M+E + H
Sbjct: 301 RLAKKLVFKKVRKALGLDRCQKFFTGAAP-ISRETLEFFLSLNIPIMELYGMSETSGPHT 359
Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
+S+ ++ S G+ + G E I + GE+CI G +V GY N E
Sbjct: 360 VSN-----PQNYRLLSCGKALPGCETKI-----HNPDADGIGEICIWGRHVFMGYLNMEE 409
Query: 379 ANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGEKISPIEV-DAVLLSHPDI 435
+ A GW H+GD+G+ D DG+L++ GRIKELI GGE + P+ + +AV P I
Sbjct: 410 KTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIEEAVKKELPII 469
Query: 436 AQAVAFGVPDDKYGE---EINCAIIPREGSNIDE--EEVLRFCKK 475
+ A+ G K+ + C + P G +D EE + FC+
Sbjct: 470 SNAMLVG-DKRKFLSMLLTLKCEVDPETGEPLDNLTEEAIEFCRL 513
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 100/373 (26%), Positives = 155/373 (41%), Gaps = 68/373 (18%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219
P D AL L TSG+ PKGV + +L A+V IK++ T +D + LPLFH G+
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTV 423
Query: 220 GLLSSFAAGAAVTL---PAAGR--------------FSASTFWQDMIKYNATWYTAVPTI 262
GL + GA V L P R F STF + ++
Sbjct: 424 GLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF----------- 472
Query: 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
A P +LR++ + + L ++ FG +LE Y +TE ++S
Sbjct: 473 ---------ANPYDFA-RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSI 522
Query: 323 N-PLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY------- 373
N P+ KPG+VGR + G + +L G+ Q G + ++GPN+ GY
Sbjct: 523 NVPMAA----KPGTVGRILPGMDARLLSVPGIEQ----GGRLQLKGPNIMNGYLRVEKPG 574
Query: 374 ------KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
N GW+ TGDI FD G++ + GR K GE +S V+
Sbjct: 575 VLEVPTAENARGEMER---GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQ 631
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN-VAAFKVPKRV 486
+ L Q D GE + ++ S + E++ ++ +++ V VP+ +
Sbjct: 632 LALGVSPDKQHATAIKSDASKGEAL---VLFTTDSELTREKLQQYAREHGVPELAVPRDI 688
Query: 487 FITNELPKTASGK 499
+LP SGK
Sbjct: 689 RYLKQLPLLGSGK 701
|
Length = 718 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 84/300 (28%), Positives = 127/300 (42%), Gaps = 15/300 (5%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
DP DVA+ L TSGT PKGVPLT NL A+ + E D + LP FH +G
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240
Query: 219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
+ L +G V A + + + T+ + P +L + K E
Sbjct: 241 SCTLFPLLSGVPVVF-AYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYIL-KTAKKQESCL 298
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
P LRF+ + + + F L + Y TE + +++ N + P VG
Sbjct: 299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN--TVNSPKHESCVG 356
Query: 338 RPV-GQEIAIL-DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG--WFHTGD 393
P+ G ++ I+ +E VP G G V RG ++ GY L G W+ TGD
Sbjct: 357 MPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGD 416
Query: 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH------PDIAQAVAFGVPDDK 447
+GY D G L L GR+ + G E +S ++++L+ V G+P +K
Sbjct: 417 LGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK 476
|
Length = 539 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-25
Identities = 102/402 (25%), Positives = 158/402 (39%), Gaps = 57/402 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY+ V A L+ G++A + + N++E ++ LA + A AP++ AY+
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 91 PDEFEFYLSDSESKL-----LLTPA-----EGN--AAAQAAASKLNISHATATLLDADSE 138
LS +KL LLTP +G A A AA +
Sbjct: 86 ------LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPA 139
Query: 139 LTLS--LAHSESDT--NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ + LA + A + + P VA +L TSG+T PK V T L A+ + I
Sbjct: 140 IAFAALLATPPTAAVDAAFAAVG--PDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIA 197
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL----PAAGRFSASTFWQDM 248
+ + V+V LP H G G + + P G F T +++
Sbjct: 198 QCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLF-EETL-RNL 255
Query: 249 IKYNATWYTAVPTIHQI---VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE----E 301
+ + T Y VP ++ L+R A + +LR + A+L + RL+
Sbjct: 256 REVSPTVYFNVPKGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALAVR 315
Query: 302 AFGAPVL--EAYAMTEA--THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
G + TE T P + G +G P G E+ + VP G
Sbjct: 316 TTGERIPMTSGLGATETAPTATFVHWPTD-----RSGVIGLPAPGTELKL-----VPNGG 365
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF 397
K EV ++GPNVT GY +PE AF G++ GD F
Sbjct: 366 --KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRF 405
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-24
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
T D+GY G LH +GR+ ++IN G + PIEV+ V+L P + +AV + D G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
E + +I E ID ++ +C +++A ++VP + E+PK A+GK+ R+
Sbjct: 354 ERVKAKVISHEE--IDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRK---LLE 408
Query: 510 LAQVSA 515
L +V+A
Sbjct: 409 LGEVTA 414
|
Length = 414 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 121/534 (22%), Positives = 203/534 (38%), Gaps = 84/534 (15%)
Query: 31 LTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+TY+ + + + A L+A AG+ GD VAL N F+ ++L + + A LN
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNI 63
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQA-------------AASKLNISHATATLLDAD 136
+++L+ E A + S + +LL
Sbjct: 64 RSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK- 122
Query: 137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
+ A E ++ + AL+++TSGTT PK ++ + S + S+
Sbjct: 123 ----VDAASDEPVPASLRSGVS-IRSTALYIYTSGTTGLPKAARISHLRVLQC-SGMLSL 176
Query: 197 YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
+T D LPL+H G L G++ GA + L +FSAS FW D KYN
Sbjct: 177 CGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVL--KPKFSASQFWDDCRKYNV--- 231
Query: 257 TAVPTIHQIV--LDRHVA----KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLE 309
T+ Q + L R++ K+R + L P + FG V E
Sbjct: 232 ----TVFQYIGELLRYLCNQPQSDNDRDHKVRL--AIGNGLRPDVWREFLRRFGPIHVWE 285
Query: 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQE-------------- 355
YA TE N + + G+VGR + L ++ P E
Sbjct: 286 TYASTE------GNIGFINYTGRVGAVGR-----ASCLYKLLSPFELIKYDVEKDEPVRD 334
Query: 356 ------GGAKGEVCIRGPNVTK-----GYKNNPEANKSAFLFG-------WFHTGDIGYF 397
KGE + +T GY E + L +F+TGD+
Sbjct: 335 AQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQ 394
Query: 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN-CAI 456
D +L+ R + GE ++ EV +L I + +GV + A+
Sbjct: 395 DRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGVTVPGHEGRAGMAAV 454
Query: 457 IPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQR-RIVSEHF 509
I + G+ D E++ + ++ + A+ P+ + I + + T + K Q+ R+V E F
Sbjct: 455 ILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKVRLVEEGF 508
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 135/505 (26%), Positives = 220/505 (43%), Gaps = 44/505 (8%)
Query: 22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
AL+ +G+ L+Y+ + R A L G+ V L ++E V+ LA+++A
Sbjct: 2206 ALTFAGQ-TLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGA 2264
Query: 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
PL+ Y + + + DS LLL + A A +L A L D + L
Sbjct: 2265 YVPLDPEYPLERLHYMIEDSGIGLLL----SDRALFEALGELPAGVARWCLEDDAAALA- 2319
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
A+S++ +S P A ++TSG+T +PKGV ++ +A + + +
Sbjct: 2320 --AYSDAPLPFLSL----PQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRA 2373
Query: 202 SDSTVIVLPLFHVHGMLAG--LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
D L + ++ A LL GA V L A G++ A Q + + +
Sbjct: 2374 DDCE---LHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFT 2430
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVL--EAYAMTEAT 317
P+ + L + +A P +R + +L L R+ +AF AP L AY TE
Sbjct: 2431 PS-YGSQLAQWLAGQGEQLP-VRMCITGGEALTGEHLQRIRQAF-APQLFFNAYGPTETV 2487
Query: 318 HLMSSNPLPEDGPHKPGSV--GRPVGQEIA-ILDE--IGVPQEGGAKGEVCIRGPNVTKG 372
+ + PE SV GR VG +A ILD VPQ GA GE+ + G + +G
Sbjct: 2488 VMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQ--GATGELYVGGAGLAQG 2545
Query: 373 YKNNPEANKSAFLFGWF--------HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIE 424
Y + P F+ F TGD+ +DG + VGRI + G +I E
Sbjct: 2546 YHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGE 2605
Query: 425 VDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEE-VLR-----FCKKNVA 478
+++ LL HP + +AV + D G+++ ++ DE + LR K+ +
Sbjct: 2606 IESRLLEHPAVREAVVLAL-DTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLP 2664
Query: 479 AFKVPKRVFITNELPKTASGKIQRR 503
+ VP + + + LP TA+GK+ RR
Sbjct: 2665 DYMVPAHLILLDSLPLTANGKLDRR 2689
|
Length = 4334 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 115/496 (23%), Positives = 201/496 (40%), Gaps = 42/496 (8%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY ++ E +R A+ + + + + ++ FL I++ P++ +
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ E + + +L++ + + +S A + ++ A D
Sbjct: 86 SERIEMIIEAAGPELVIH-TAELSIDAVGTQIITLS-ALEQAETSGGPVSFDHAVKGDDN 143
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVL- 209
I ++TSG+T PKGV ++ +NL + + + + + L+E L
Sbjct: 144 YYI-------------IYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEG---KQFLN 187
Query: 210 -PLFHVHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI-V 266
F + L A+G L + ++++ K + + P+ + +
Sbjct: 188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCL 247
Query: 267 LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS--- 322
LD + + YP L C L L E F A + Y TEAT ++S
Sbjct: 248 LDPNFNQEN--YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKI 305
Query: 323 -NPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
+ + P P +P + I+DE G P G KGE+ I GP+V+KGY NNPE
Sbjct: 306 TQEILDQYPRLPIGFAKP-DMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTA 364
Query: 382 SAFLFG----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ 437
AF + TGD G +DG L GR+ I G +I +++ L I
Sbjct: 365 EAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIES 423
Query: 438 AVAFGV--PDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA----AFKVPKRVFITNE 491
AV D K I AI+P E ++ + KK + A+ +P++ ++
Sbjct: 424 AVVVPKYNKDHKVEYLI-AAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQ 482
Query: 492 LPKTASGKIQRRIVSE 507
LP TA+GKI R+ ++E
Sbjct: 483 LPLTANGKIDRKALAE 498
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 130/504 (25%), Positives = 195/504 (38%), Gaps = 129/504 (25%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNAAY 89
+TY ++ E V AS LVA G N + VA+ F +T E++I R T + A+
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAI-FADTRAEWLIALQGCFRQNITVVTIYASL 165
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSES- 148
+ L+++E ++ ++ +S+L + D + SL+ S +
Sbjct: 166 GEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNW 225
Query: 149 ------------DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KS 195
N + P+D+A+ ++TSG+T PKGV +T N+ A+V+ +
Sbjct: 226 TVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV 285
Query: 196 VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ--------- 246
V KL ++D + LPL H+ LA A GAA+ G S T
Sbjct: 286 VPKLGKNDVYLAYLPLAHIL-ELAAESVMAAVGAAI-----GYGSPLTLTDTSNKIKKGT 339
Query: 247 --DMIKYNATWYTAVPTIHQIVLD----------------------RHVAKPEP------ 276
D T TAVP I V D R +A E
Sbjct: 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAW 399
Query: 277 ----------VYPK--------LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE--- 315
V+ K +RF+ S A L+ + GAP+ + Y +TE
Sbjct: 400 GLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCA 459
Query: 316 -ATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVP-----------QEGGAK---- 359
AT S D SVGR +G P +EGG
Sbjct: 460 GATF---SEW---DDT----SVGR-----------VGPPLPCCYVKLVSWEEGGYLISDK 498
Query: 360 ----GEVCIRGPNVTKGYKNNPEANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGRIK 410
GE+ I GP+VT GY N E + WF+TGDIG F DG L ++ R K
Sbjct: 499 PMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKK 558
Query: 411 ELIN-RGGEKISPIEVDAVLLSHP 433
+++ + GE +S +V+A L P
Sbjct: 559 DIVKLQHGEYVSLGKVEAALSVSP 582
|
Length = 696 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 116/512 (22%), Positives = 184/512 (35%), Gaps = 89/512 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
T+ ++E + A+ A G +GDVVAL N +EFV ++L + + A +N+
Sbjct: 4 WTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS--- 60
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATA------TLLDADSELTLSLA 144
N ++ + +S A A L S
Sbjct: 61 ----------------------NLRLESLLHCITVSKAKALIFNLLDPLLTQSSTEPP-- 96
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
S+ D N KL +++TSGTT PK + + + + + D
Sbjct: 97 -SQDDVNFRDKL--------FYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDV 147
Query: 205 TVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
LPL+H G + G+ + G+ V + +FSAS FW D +KYN T V I +
Sbjct: 148 VYDCLPLYHSAGGIMGVGQALLHGSTVVIRK--KFSASNFWDDCVKYNC---TIVQYIGE 202
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSN 323
I P K + L P I + FG P + E Y TE S+
Sbjct: 203 ICRYLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGN----SS 258
Query: 324 PLPEDGPHKPGSVG---------RPVGQEIAILDEIGVPQEGGAKGEVCIR-GPNVT--- 370
+ D G+ G P+ + +DE + G +CI P
Sbjct: 259 LVNIDN--HVGACGFNSRILPSVYPI--RLIKVDEDTGELIRDSDG-LCIPCQPGEPGLL 313
Query: 371 -------------KGYKNNPEANK----SAFLFG--WFHTGDIGYFDSDGYLHLVGRIKE 411
GY N NK F G F +GD+ D GYL+ R +
Sbjct: 314 VGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGD 373
Query: 412 LINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471
GE +S EV+ +L + + V +GV A I +D +
Sbjct: 374 TFRWKGENVSTTEVEGILSNVLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDLDRFSA 433
Query: 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
K++ + P+ + + E+ KT + K+Q+
Sbjct: 434 VLAKSLPPYARPQFIRLLPEVDKTGTFKLQKT 465
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 6e-22
Identities = 126/508 (24%), Positives = 204/508 (40%), Gaps = 47/508 (9%)
Query: 27 GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLN 86
G L Y + V A+ L A ++ G V + N E + LA + A A +
Sbjct: 38 GTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMAD 97
Query: 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
E + ++ L A G+ A +++ H+ + + +T HS
Sbjct: 98 GNLPIAAIERFCQITDPAAAL-VAPGSKMA--SSAVPEALHSIPVIAVDIAAVTRESEHS 154
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL-----TE 201
+ D + TSGTT PK V L N +V +I L
Sbjct: 155 LDAASLAGNADQGSEDPLAMIFTSGTTGEPKAV-LLANRTFFAVPDILQKEGLNWVTWVV 213
Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA-VP 260
++T LP H+ G+ L G VT G + S +++ NA T VP
Sbjct: 214 GETTYSPLPATHIGGLWWILTCLMHGGLCVT---GGENTTSL--LEILTTNAVATTCLVP 268
Query: 261 TIHQIVLDRHVAK---PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317
T+ L + V++ P LR + S A R EA G + Y ++E
Sbjct: 269 TL----LSKLVSELKSANATVPSLRLV-GYGGSRAIAADVRFIEATGVRTAQVYGLSETG 323
Query: 318 HLMSSNPLPEDGPH----KPGSVGRPV-GQEIAILDEIGV-PQEGGAK-----GEVCIRG 366
++ LP D + G+VGRP G ++ + G+ P GA G + I+
Sbjct: 324 --CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKS 381
Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
P GY NNPE + GW +TGD+ DG+ ++ GR E+I GG I+P EVD
Sbjct: 382 PANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVD 441
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA------- 479
+ + +A + +PD+++G + A++ + +DE K +AA
Sbjct: 442 RIAEGVSGVREAACYEIPDEEFGALVGLAVVA--SAELDESAARAL-KHTIAARFRRESE 498
Query: 480 -FKVPKRVFITNELPKTASGKIQRRIVS 506
P + I ++P+T SGK+ R ++
Sbjct: 499 PMARPSTIVIVTDIPRTQSGKVMRASLA 526
|
Length = 540 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-21
Identities = 82/320 (25%), Positives = 128/320 (40%), Gaps = 44/320 (13%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML 218
P D+A L TSG+T PKGV T A + ++ Y + + + PLF + G
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPA 231
Query: 219 AGLLS-----SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
G+ S A V PA + + +Y T P + + + A
Sbjct: 232 LGMTSVIPDMDPTRPATVD-PAK-------LFAAIERYGVTNLFGSPALLERLGRYGEAN 283
Query: 274 PEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEA---------THLMSS 322
+ P LR + S A + ++ R A +L Y TEA L ++
Sbjct: 284 GIKL-PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFAT 342
Query: 323 NPLPEDGPHKPGS-VGRPV-GQEIAI--LDEIGVPQEGGAK-------GEVCIRGPNVTK 371
++G G VGRPV G E+ I + + +P+ A GE+ + GP VT+
Sbjct: 343 RAATDNGA---GICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTR 399
Query: 372 GYKNNPEANKSAFLFG-----WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
Y N PEA + A + W GD+GY D+ G L GR + G + I +
Sbjct: 400 SYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCE 459
Query: 427 AVLLSHPDIAQAVAFGVPDD 446
+ +HP + ++ GV
Sbjct: 460 RIFNTHPGVKRSALVGVGVP 479
|
Length = 552 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 1e-20
Identities = 121/505 (23%), Positives = 216/505 (42%), Gaps = 55/505 (10%)
Query: 51 GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA 110
GI V N E + + AV A PLN D+ ++ +E ++++ A
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIV--A 117
Query: 111 EGNAAAQAAASKLNISHATATLL----DADSELT-----LSLAHSESDTNAISKLTNDP- 160
+ A Q A + DADS + + E+ + S + + P
Sbjct: 118 DPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPE 177
Query: 161 ---SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--YKLTESDSTVIVLPLFHVH 215
+ A +++GTT PKGV + +L ++++ +T +S + +P++HV
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV- 236
Query: 216 GMLAGL-LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTA--VPTIHQIVLDRHVA 272
+ G+ L++F +G + P SA T + I A A VPT+ I L H
Sbjct: 237 -LSWGVPLAAFMSGTPLVFPGPD-LSAPTLAK--IIATAMPRVAHGVPTL-WIQLMVHYL 291
Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL--MSSNPLPEDGP 330
K P L+ I +++ P+++ EE +G V+ + MTE + + ++ P G
Sbjct: 292 KNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGE 351
Query: 331 HKPG---SVGR-PVGQEIAILDEIGVPQEGGAK--GEVCIRGPNVTKGYKNNP--EANKS 382
+ S GR P E I+++ G E + GE+ +RG VT Y ++P E +
Sbjct: 352 ARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGA 410
Query: 383 AFLF---------------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427
A F GW TGD+G DG+L + R +++I GGE I +++
Sbjct: 411 ASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLEN 470
Query: 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK---NVAAFKVPK 484
+++ P++ + G PDDK+GE + G E R + + + +P+
Sbjct: 471 YIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPE 530
Query: 485 RVFITNELPKTASGKIQRRIVSEHF 509
+E+ KT+ GK ++ + +H
Sbjct: 531 YWTFVDEIDKTSVGKFDKKDLRQHL 555
|
Length = 576 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 135/610 (22%), Positives = 232/610 (38%), Gaps = 130/610 (21%)
Query: 11 NQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE 67
V D +R + V + +TY+ + E + L G+ G VA+ E
Sbjct: 99 EVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWE 158
Query: 68 FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH 127
++ + AA + A D + L ++E K ++ + + +
Sbjct: 159 WLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPN 218
Query: 128 ATATLLDA-----DSE--------LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
T LD+ D+E ++ HS + + + D+AL ++TSGTT
Sbjct: 219 TTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGS-HHPLNIPENNDDLALIMYTSGTTG 277
Query: 175 RPKGVPLTQNNLAASVSNIK----SVYKLTESDSTVIV-LPLFHVHGMLAGLLSSFAAGA 229
PKGV T +L A + ++ + E D T LPL H+ M G+ + F A
Sbjct: 278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHI--MEFGVTNIFLARG 335
Query: 230 AVTLPAAGRFSASTFWQ---DMIKYNATWYTAVP----TIHQIV---------LDRHV-- 271
A+ + R TF + D+ ++ + VP TI + V L R V
Sbjct: 336 ALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFD 395
Query: 272 ------------AKPEPVY-------------PKLRFIRSCSASLAPVILSRLEEAFGAP 306
K P + ++R + S L+ + FG
Sbjct: 396 HAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-M 454
Query: 307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD--EIGVPQEGGAKGEVC 363
V++ + +TE + + G +P +VG+ G E+ +LD E +GE+
Sbjct: 455 VIQGWGLTET---VCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEIL 511
Query: 364 IRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI-NRGGEKIS 421
+RGP + KGY E + GWFHTGD+G ++G L ++GR+K L N GE I
Sbjct: 512 LRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYI- 570
Query: 422 PIEVDAVLLSHPDIAQAVAFGV-----PDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN 476
+E L ++ V GV P Y I CA++ DE + + F K++
Sbjct: 571 ALEALEALYGQNEL--VVPNGVCVLVHPARSY---I-CALVL-----TDEAKAMAFAKEH 619
Query: 477 ------------------VAA-------------FKVPKRVFITNE--LPK----TASGK 499
F++ + V + ++ P+ TA+ K
Sbjct: 620 GIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMK 679
Query: 500 IQRRIVSEHF 509
++RR++ E +
Sbjct: 680 LKRRVIDERY 689
|
Length = 700 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-20
Identities = 73/232 (31%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 299 LEEAF-GAPVLEAYAMTEATHLMSS-----------NPLPEDGPHKPGSVGRPVGQEIAI 346
L E F A + Y TEAT ++S LP G KP S + I
Sbjct: 280 LLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPI-GYAKPDS-------PLLI 331
Query: 347 LDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGY 402
+DE G G +GE+ I GP+V+KGY NNPE AF +HTGD GY + DG
Sbjct: 332 IDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-DGL 390
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN--CAIIPRE 460
L GRI I G +I E++ L + AV VP +K + ++P+E
Sbjct: 391 LFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVV--VPYNKDHKVQYLIAYVVPKE 448
Query: 461 GSNIDEEEVLRFCKKNVA----AFKVPKRVFITNELPKTASGKIQR-RIVSE 507
E E+ + KK + + +P++ + LP T +GKI R ++ E
Sbjct: 449 EDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEE 500
|
Length = 503 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 1e-19
Identities = 105/409 (25%), Positives = 162/409 (39%), Gaps = 70/409 (17%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY+ E V A L+ G++A + + N++E ++ LA + A AP++ AY+
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 91 PDEFEFYLSDSESKL-----LLTPA-----EGNAAAQA---------------AASKLNI 125
+S KL LLTP +G A A+A A
Sbjct: 130 ------LVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRA 183
Query: 126 SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN 185
+ A LL + AH A+ P +A FL TSG+T PK V T
Sbjct: 184 ATPFAALLATPPTAAVDAAH-----AAV-----GPDTIAKFLFTSGSTGLPKAVINTHRM 233
Query: 186 LAASVSNIKSVYKLTESDSTVIV--LPLFHVHGMLAGLLSSFAAGAAVTL----PAAGRF 239
L A+ + + + V+V LP H G L G + + P G F
Sbjct: 234 LCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGF 293
Query: 240 SASTFWQDMIKYNATWYTAVPTIHQ---IVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
T +++ + + T Y VP + L+R A + +L+ + A+L+ +
Sbjct: 294 -DETL-RNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW 351
Query: 297 SRLEEAFGA------PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE 349
RL+ A ++ MTE + P + G++G P G E+ +
Sbjct: 352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLS---RAGNIGLPAPGCEVKL--- 405
Query: 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF 397
VP G K EV ++GPNVT GY PE AF G++ +GD F
Sbjct: 406 --VPVGG--KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRF 450
|
Length = 614 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 3e-18
Identities = 101/377 (26%), Positives = 154/377 (40%), Gaps = 46/377 (12%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIV----LPLFHV 214
D A+ T+G+T P+ L+ A +SN++ + D+ V LPL+H
Sbjct: 150 DSGGPAVLQGTAGSTGTPRTAILSP---GAVLSNLRGLNARVGLDAATDVGCSWLPLYHD 206
Query: 215 HGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMIKYNATWYTAVPTIHQIVLDRHVAK 273
G LA LL++ AGA + L FSAS F W + + TA P ++ ++ +
Sbjct: 207 MG-LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR 265
Query: 274 PEPV-YPKLRFIRSCSASLAPVILSRLEEA---FG---APVLEAYAMTEATHLMSSNPLP 326
V LR + + R A FG +Y + E+T ++ P+P
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTV-PVP 324
Query: 327 EDG-------------PHKPGSVGRPV-GQEIAILDEIGVPQEGGAK-GEVCIRGPNVTK 371
G + +G P+ G E+ I G G + GE+ IRG ++
Sbjct: 325 GIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMS 384
Query: 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLS 431
GY + WF TGD+GY DG L + GR KELI G I P E++ V
Sbjct: 385 GYLGQAPIDPD----DWFPTGDLGYL-VDGGLVVCGRAKELITVAGRNIFPTEIERVAAQ 439
Query: 432 HPDIAQA--VAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF--KVPKRVF 487
+ + VA G + + +I E DE + VA+ VP V
Sbjct: 440 VRGVREGAVVAVGTGEGSARPGL---VIAAEFRGPDEAGARSEVVQRVASECGVVPSDVV 496
Query: 488 IT--NELPKTASGKIQR 502
LP+T+SGK++R
Sbjct: 497 FVAPGSLPRTSSGKLRR 513
|
Length = 525 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 113/513 (22%), Positives = 193/513 (37%), Gaps = 113/513 (22%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LTY +++ R S + + G+N GD + N E++I A T PL
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASK--------LNISHATATLLDADSELTLS 142
+ EF ++ +E + ++ + K ++ ++ + EL +S
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS 197
Query: 143 LAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK 198
E + S P +D+ ++TSGTT PKGV LT + A V + + K
Sbjct: 198 CFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLK 257
Query: 199 LT-----ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY-- 251
+T E DS LPL HV+ + + GA++ FWQ I+Y
Sbjct: 258 VTDRVATEEDSYFSYLPLAHVYDQVIETYC-ISKGASIG-----------FWQGDIRYLM 305
Query: 252 ------NATWYTAVP---------TIHQIVLDRHVAKPEPVYP---KLRFIR------SC 287
T + VP + +I + K + KL +R
Sbjct: 306 EDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEA 365
Query: 288 SASLAPVILSRLEEAFG----------AP----------------VLEAYAMTEA----- 316
S L ++ +++E G AP + + Y +TE+
Sbjct: 366 SPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCF 425
Query: 317 THLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGG------AKGEVCIRGPNVT 370
T + + + G+VG P+ A L+ VP+ G +GE+C+RG +
Sbjct: 426 TSIANVFSMV-------GTVGVPMTTIEARLES--VPEMGYDALSDVPRGEICLRGNTLF 476
Query: 371 KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRG-GEKISPIEVDAVL 429
GY + + + GWFHTGDIG + +G + ++ R K + GE ++ ++
Sbjct: 477 SGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTY 536
Query: 430 LSHPDIAQAVAFG-----------VPDDKYGEE 451
P IA +G VPD + E+
Sbjct: 537 SRCPLIASIWVYGNSFESFLVAVVVPDRQALED 569
|
Length = 660 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 9e-17
Identities = 143/604 (23%), Positives = 225/604 (37%), Gaps = 125/604 (20%)
Query: 3 GVTLIGLLNQVIDQFS---SKRALSVSGKFD-----LTYSRIHELVERAASRL--VAAGI 52
G TLI L+ + I + R L S LT++++ + +RL VA
Sbjct: 33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAG-- 90
Query: 53 NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP---DEFEFYLSDSESKLLLTP 109
GD VA+ P +++V F A I+A A PL A P + + L D+E ++LT
Sbjct: 91 -PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTT 149
Query: 110 AEGNAAAQAAASKL-NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLH 168
AAA+A L N+ + A + S S D DV+ +
Sbjct: 150 T---AAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVEL------DTDDVSHLQY 200
Query: 169 TSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
TSG+T P GV +T + ++ I S+ L + V LPL+H G+ + F A
Sbjct: 201 TSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGL---SMIGFPA 257
Query: 228 --GAAVTLPAAGRFSASTF-WQDMIKYNATW---YTAVPTI-HQIVLDRHVAKP------ 274
G TL + F W + + TA P ++ R +
Sbjct: 258 VYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDL 317
Query: 275 ---------EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS--- 322
EPV + + + + AP L R +Y + EAT +++
Sbjct: 318 SNVVLIIGSEPVSIDA--VTTFNKAFAPYGLPR------TAFKPSYGIAEATLFVATIAP 369
Query: 323 -------------------NPLPEDGPHKP-----GSVGRPVGQEIAILDE-IGVPQEGG 357
+ D P+ G V R Q I+D G G
Sbjct: 370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVAR--SQWAVIVDPDTGAELPDG 427
Query: 358 AKGEVCIRGPNVTKGYKNNPE-------------------ANKSAFLFGWFHTGDIGYFD 398
GE+ + G N+ +GY PE A+ +A W TGD+G +
Sbjct: 428 EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY- 486
Query: 399 SDGYLHLVGRIKELINRGGEKISPIEVDA-VLLSHPDIAQ--AVAFGVPDDKYGEEINCA 455
DG L++ GRI +LI G P +++A V + P + + AF VP E+
Sbjct: 487 LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVP----AEDNERL 542
Query: 456 IIPRE---GSNIDEE----EVLRFCKKNVAAFKVPK-RVFITNELPKTASGKIQRRIVSE 507
+I E G++ + + +R V R+ +P+T SGK+ RR
Sbjct: 543 VIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRA 602
Query: 508 HFLA 511
+L
Sbjct: 603 QYLD 606
|
Length = 612 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 103/420 (24%), Positives = 174/420 (41%), Gaps = 59/420 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY V+ A L+ G++ G V + N++E +M LA ++A AAP++ AY+
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 91 PDEFEFYLSDSESKL-----LLTP----AEGNAAAQAAASKLNISHATATLLDADSELTL 141
+S +KL L+ P A+ A A + L++ T + E
Sbjct: 141 ------LMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIA 194
Query: 142 SLAHSESDTN--------AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
S+A ++ AI+ +T P VA +L TSG+T PK V TQ + A+++
Sbjct: 195 SIAFADLAATPPTAAVAAAIAAIT--PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ 252
Query: 194 KSVYKLTESDSTVIVL---PLFHVHGMLAGLLSSFAAGAAVTL----PAAGRFSASTFWQ 246
+ + + L P H G A G + + P G F + +
Sbjct: 253 EQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETI--R 310
Query: 247 DMIKYNATWYTAVPTIHQIV---LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE-- 301
++ + + T Y VP + ++ +++ A + LR + A+L+ + R++
Sbjct: 311 NLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALA 370
Query: 302 --AFGA--PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
G P Y TE + + G +G P+ G E+ + P
Sbjct: 371 VRTTGHRIPFYTGYGATETAPTTTGTHWD---TERVGLIGLPLPGVELKL-----APV-- 420
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYF--DSDGYLHLV--GRIKE 411
G K EV ++GPNVT GY +PE +AF G++ GD F D L+ GR+ E
Sbjct: 421 GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAE 480
|
Length = 624 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 6e-16
Identities = 96/387 (24%), Positives = 156/387 (40%), Gaps = 75/387 (19%)
Query: 167 LHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHV-----HGMLAGL 221
L+TSGTT K V ++N V + E D +V + HG L G
Sbjct: 260 LYTSGTTGNSKAV--VRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGS 317
Query: 222 LSSFAAGAAVTLPAAG----RFSASTFWQDMIKYNATWYTAVP-TIHQIVLDRHVAKPEP 276
LS G + G + W + K+ T +P TI R++ K +P
Sbjct: 318 LS---LGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTI------RYLIKTDP 368
Query: 277 VYPKLRFIRSCSASLAPVILSRLEEA-FGAPVLE-----------------AYAMTE--A 316
+R + LS L+E G V+E Y TE
Sbjct: 369 EATIIR---------SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGI 419
Query: 317 THLMS--SNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPN----VT 370
T+L +P + P +P IL E G GEV + P T
Sbjct: 420 TYLYCYGHINIPYNATGVPSIFIKPS-----ILSEDGKELNVNEIGEVAFKLPMPPSFAT 474
Query: 371 KGYKNNPEANKSAFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
YKN+ + + LF G++++GD+G+ D +GY +V R + I G K+ ++
Sbjct: 475 TFYKNDEKFKQ---LFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE 531
Query: 427 AVLLSHPDIAQAVAFGVPD-DKYGEEINCAII--PREGSNID----EEEVLRFCKKNVAA 479
+L HP + + + G+ D D Y I ++ + +ID + E+ +++ +
Sbjct: 532 TSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIES 591
Query: 480 FKVPKRVFITNELPKTASGKIQRRIVS 506
V +++ I N+LPKT +GKI R+I+S
Sbjct: 592 LAVLRKIIIVNQLPKTKTGKIPRQIIS 618
|
Length = 647 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 1e-15
Identities = 108/460 (23%), Positives = 168/460 (36%), Gaps = 98/460 (21%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY ++++V + + L + G+ + N+ E++I A PL
Sbjct: 81 TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140
Query: 92 DEFEFYLSDSE-----------SKLLLTPAEGNAAAQAAASKLNISHA------TATLLD 134
EF +S SE S+L T + S +S T L+
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200
Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L L + I K SD+ ++TSGTT PKGV ++ ++ ++ +
Sbjct: 201 YAWDEFLKLGEGKQYDLPIKK----KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVI 256
Query: 195 SVYK-----LTESDSTVIVLPLFHVHGMLAGLLSSF-AAGAAVTLPAAGRFSASTFWQDM 248
+ K LT D + LPL H+ + + F GAA+ R +D+
Sbjct: 257 RLLKSANAALTVKDVYLSYLPLAHIFDRV--IEECFIQHGAAIGF---WRGDVKLLIEDL 311
Query: 249 IKYNATWYTAVPTIHQIVLDR------------------------------------HVA 272
+ T + AVP VLDR HV
Sbjct: 312 GELKPTIFCAVPR----VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVE 367
Query: 273 KPEPVYPKL-------------RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA-TH 318
P+ KL R I S +A LA + S L VL+ Y +TE+
Sbjct: 368 A-SPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426
Query: 319 LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQ------EGGAKGEVCIRGPNVTKG 372
S P D G+VG PV L+ VP+ +GE+CIRG + G
Sbjct: 427 TFVSLP---DELDMLGTVGPPVPNVDIRLES--VPEMEYDALASTPRGEICIRGKTLFSG 481
Query: 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412
Y + K + GW HTGD+G + +G + ++ R K +
Sbjct: 482 YYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNI 521
|
Length = 666 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-15
Identities = 112/460 (24%), Positives = 181/460 (39%), Gaps = 96/460 (20%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY ++E V + S L A+G G V + N ++++ A PL P
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137
Query: 92 DEFEF----------YLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
++ ++ D + K LL P +A+ + ++ + T D S++ +
Sbjct: 138 GAVDYIVDHAEIDFVFVQDKKIKELLEP--DCKSAKRLKAIVSFTSVTEEESDKASQIGV 195
Query: 142 SL----------AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191
+ S+TN P D+ ++TSGT+ PKGV LT +A V
Sbjct: 196 KTYSWIDFLHMGKENPSETNP-----PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVR 250
Query: 192 NIKSVY-----KLTESDSTVIVLPLFHVHGMLAGLLSS--FAAGAAVTLPAAGRFSASTF 244
+ K+T D + LPL H+ L ++ F GA+V G +A
Sbjct: 251 GVDLFMEQFEDKMTHDDVYLSFLPLAHI---LDRMIEEYFFRKGASVGY-YHGDLNA--L 304
Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFI-------------RSCSASL 291
D+++ T VP + + + + + + P+ R I R S
Sbjct: 305 RDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKK 364
Query: 292 APVILS---------------RLEEAFGAP----------------VLEAYAMTEATHLM 320
A + RL + GAP V++ Y +TE T
Sbjct: 365 ASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTE-TLGP 423
Query: 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG------GAKGEVCIRGPNVTKGY 373
++ P++ G+VG P V E+ L+E VP+ G +GE+C+RG + GY
Sbjct: 424 TTLGFPDEMCML-GTVGAPAVYNELR-LEE--VPEMGYDPLGEPPRGEICVRGKCLFSGY 479
Query: 374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELI 413
NPE + GWFHTGDIG +G L ++ R K LI
Sbjct: 480 YKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLI 519
|
Length = 660 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 115/497 (23%), Positives = 181/497 (36%), Gaps = 123/497 (24%)
Query: 10 LNQVIDQFSSKRALSVSGKFDLTYSRIHELVER--------AASRLVAAGINA----GDV 57
L + +++++ R ++ +F L +S + V R A +R V A + GD
Sbjct: 23 LVRHVERWAKVRGDKLAYRF-LDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDR 81
Query: 58 VALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDE------FEFYLSDSESKLLLTPAE 111
VA+ P ++++I F + A A PL + P E L D +LT +
Sbjct: 82 VAILAPQNLDYLIAFFGALYAGRIAVPL---FDPAEPGHVGRLHAVLDDCTPSAILTTTD 138
Query: 112 GNAAAQAAASKLNISHATATL-LDA-DSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169
+ + +DA E+ + E++ + +A +T
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVPPEANED----------TIAYLQYT 188
Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229
SG+T P GV +T NL +V + + E D V LP FH G++ LL + G
Sbjct: 189 SGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPAL-LGH 247
Query: 230 AVTL--PAA-----GRFSASTFWQDMIKYNAT-------WYTAVPTI---HQIVLDRHVA 272
+T PAA GR W I+ A ++A P H R +
Sbjct: 248 YITFMSPAAFVRRPGR------W---IRELARKPGGTGGTFSAAPNFAFEHAAA--RGLP 296
Query: 273 KPEPVYPKLRFIRSCSASLAPVILSRLE---EAFG------APVLEAYAMTEATHLMSSN 323
K L ++ PV + + EAF + +Y M EAT +S+
Sbjct: 297 KDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTT 356
Query: 324 P----------------------LPEDGPH-----KPGSVGRPVGQEIAILD-EIGVPQE 355
P +P D P+ G VG + I+D E
Sbjct: 357 PMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGV--SEWAVIVDPETASELP 414
Query: 356 GGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------------FGWFHTGDIG-Y 396
G GE+ + G N+ GY PE + F W TGD G Y
Sbjct: 415 DGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474
Query: 397 FDSDGYLHLVGRIKELI 413
F DG L++ GR+K+L+
Sbjct: 475 F--DGELYITGRVKDLV 489
|
Length = 631 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-12
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 352 VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYL 403
VP GA GE+C+ G V +GY +P AF+ FG + TGD+ SDG L
Sbjct: 4061 VPL--GAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVL 4118
Query: 404 HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463
VGRI + G +I E++A L ++ +A A V + G+ + ++P +
Sbjct: 4119 EYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREA-AVAVQEGVNGKHLVGYLVPHQT-V 4176
Query: 464 IDEEEVLRFCKKNVAA----FKVPKRVFITNELPKTASGKIQRR 503
+ + +L K+ + A + VP + LP A+GK+ R+
Sbjct: 4177 LAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRK 4220
|
Length = 4334 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 35/183 (19%)
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFG--------------WFHTGDIGYFDSDGY 402
G GE+ + G NV GY PE + FG W TGD+G F S+G
Sbjct: 395 GTVGEIWVHGDNVAAGYWQKPEETER--TFGATLVDPSPGTPEGPWLRTGDLG-FISEGE 451
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDI--AQAVAFGVPDDKYGEEINCAII--- 457
L +VGRIK+L+ G P +++A + +I + A VPDD G E AII
Sbjct: 452 LFIVGRIKDLLIVDGRNHYPDDIEATI---QEITGGRVAAISVPDD--GTEKLVAIIELK 506
Query: 458 PREGSNIDEEEVLRFCKKNVAA-------FKVPKRVFI-TNELPKTASGKIQRRIVSEHF 509
R S+ + + LR K+ V + V V + +P T SGKI+R E +
Sbjct: 507 KRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQY 566
Query: 510 LAQ 512
Sbjct: 567 RQD 569
|
Length = 578 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 107/566 (18%), Positives = 171/566 (30%), Gaps = 105/566 (18%)
Query: 31 LTYSRIHELVER-AASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR---ATAAPLN 86
LTY ++ + A + L GI GD V L +P+ +F+ F + A P
Sbjct: 10 LTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVEPPL 69
Query: 87 AAYTPDEFEFYLS----DSESKLLLTPAEGNAA--AQAAASKLNISHATATLLDADSELT 140
+ + L + LT ++ L L+ T
Sbjct: 70 SRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFK-GWPRLVWFV---T 125
Query: 141 LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT 200
+ + L D A + + GV +T L +K + T
Sbjct: 126 EIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQYT 185
Query: 201 ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFSASTFWQDMIKYNAT-WYT 257
E + V VL G G L+S G L PA + + ++Q + KY
Sbjct: 186 EGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKYKIKDTLV 245
Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSC--SASLAPVILSRLEE---AFGAPVLEAYA 312
+H + K L +R + P L+ + F + L A
Sbjct: 246 KSRDLHWALNAHRDQK----DINLSCLRMLIVADGARPWSLASCQAFLNVFQSKGLSPCA 301
Query: 313 MTEA---------THLMSSNPLP-------------------EDGPH-----KPGSVGRP 339
+ S P+P ED P G V
Sbjct: 302 SSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSEDKPSSLPLQDSGMV--M 359
Query: 340 VGQEIAILDEIGVPQEG-GAKGEVCIRGP-NVTKGYKNNPEANKSAFLF----------- 386
G ++ I++ P GE+ + N T Y + +F
Sbjct: 360 PGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDGIGEN 419
Query: 387 GWFHTGDIGYF----------DSDGYLHLVGRIKELINRGGEKISPIE-VDAVLLSHPDI 435
+ TG +G+ G L +VG I E + G + +P + VL HP I
Sbjct: 420 PYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLRHNPDDIEATVLRVHPMI 479
Query: 436 AQA--VAFG-------VPDDKYGEEINCAIIPREGSNIDEE-EVLRFCKKNVAAFKVPKR 485
+ F V + + EE + +PR + I E +V+ + V
Sbjct: 480 YRGRIAVFSVTERVVVVAEQRGSEEESFQWVPRVLNAILSEHQVIVYVVALVPP------ 533
Query: 486 VFITNELPKTASGKIQRRIVSEHFLA 511
LPKT G+ QR FL
Sbjct: 534 ----GTLPKTPLGEKQRSETRASFLE 555
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 8e-09
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 480 FKVPKRVFITNELPKTASGKIQRRI 504
+ VP+ V +ELPKT SGKI RR+
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRL 25
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 122/509 (23%), Positives = 196/509 (38%), Gaps = 73/509 (14%)
Query: 63 PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP---AEGNAAAQAA 119
P TV+ VI++LA++ A + +++ E L S +K + T G A
Sbjct: 2 PMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLY 61
Query: 120 ASKLNISHATATLLDADSE----------------LTLSLAHSESDTNAISKLTNDPSDV 163
+ + + A A +L A E L ++ A N S + V
Sbjct: 62 SKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESV 121
Query: 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG--- 220
L +SGTT PK +P T + S+ + + D L G + G
Sbjct: 122 TNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNL----GWMMGPWL 177
Query: 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKY----NATWYTAVPTIHQIVLDRH---VAK 273
L S+F GA + L + + + K+ T VP+I + RH A
Sbjct: 178 LYSAFLNGATLAL-----YGGAPLGRGFGKFVQDAGVTVLGLVPSI--VKAWRHTGAFAM 230
Query: 274 PEPVYPKLRFIRSCSASLAP--VILSRLEEAFGAPVLEAYAMTE-ATHLMSSNPLPEDGP 330
+ KLR S + A V+ + PV+E TE A+ +SS L P
Sbjct: 231 EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ---P 287
Query: 331 HKPGSVGRP-VGQEIAILDEIGVPQEGGAK--GEVCIRGPNVTKGYKN-NPEANKSAF-- 384
PG+ +G +L++ GVP GEV + P + + N + +K +
Sbjct: 288 QAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKG 347
Query: 385 --LFGWFHT-----GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD-AVLLSHPDIA 436
++G GDI GY + GR + +N GG K S +E++ A + IA
Sbjct: 348 MPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIA 407
Query: 437 QAVAFGVPDDKYGEEINCAIIPREG------SNIDEEEVLRFCKKNVAA-----FKVPKR 485
+ A GV G E+ I G E + + ++ + FKV R
Sbjct: 408 ETAAVGVAPPDGGPEL-LVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKV-SR 465
Query: 486 VFITNELPKTASGKIQRRIVSEHFLAQVS 514
V I ELP+ AS K+ RR++ + ++S
Sbjct: 466 VKIVPELPRNASNKLLRRVLRDQLKKELS 494
|
Length = 499 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LT+S+++ A L G + GD + P +E+++ FL ++A A PL+
Sbjct: 36 LTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG 94
Query: 91 ---PDEFEFYLSDSESKLLLT--PAEGNAAAQAAASKLNISHATAT--LLDADSELTLSL 143
+ L D+ ++LT + A + LLD DS
Sbjct: 95 GAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRGSDA 154
Query: 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----K 198
D A +TSG+T P GV ++ N+ A+ + S Y
Sbjct: 155 R------------PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG 202
Query: 199 LTESDSTVIV-LPLFHVHGMLAGLLSSFAAG--AAVTLPAA 236
+ D+TV+ LP +H G++ G+ + G A +T P A
Sbjct: 203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVA 243
|
Length = 578 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL-LSHPDIAQAVAFGVPDDKYGE 450
GDI S GY GR + +N GG K+S +E++ V + + + A GVP G
Sbjct: 594 GDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGP 653
Query: 451 E---INCAIIPREGSNIDEEEVLRFCKKNVAA-----FKVPKRVFITNELPKTASGKIQR 502
E I + GSN D E+ + + FKV V I P+TAS K+ R
Sbjct: 654 EQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKV-SAVVIVPSFPRTASNKVMR 712
Query: 503 RIVSEHFLAQVSAAKV 518
R++ + ++S +K+
Sbjct: 713 RVLRQQLAQELSRSKL 728
|
Length = 728 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 337 GRPVGQEIAILDEIGVPQEGGAKGE-VCIRG-PNVTKGYKNNPEANK--SAFLFG----- 387
R +G + DE G P G GE VC + P++ + N+P+ ++ A+ F
Sbjct: 415 CRGLGMAVEAFDEEGKPVIG-EVGELVCTKPFPSMPLYFWNDPDGSRYRDAY-FDTFPGV 472
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
W H GD G + + GR +N GG +I E+ V+ P++ ++ G D
Sbjct: 473 WRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDD 531
Query: 448 YGEEINCAIIPREGSNIDEEEVLRFC---KKNVAAFKVPKRVFITNELPKTASGKIQ--- 501
E + + REG +D+ V R + ++ VP + ++P T SGK
Sbjct: 532 GDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSGKKVEVA 591
Query: 502 -RRIVSEHFLAQVSA 515
++I+ + V+A
Sbjct: 592 VKKILLGKPVENVAA 606
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 44/179 (24%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY +H V R A+ L + G+ GD VA+ P E + LA R A + + ++
Sbjct: 99 ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFS 158
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
+ + D+ +KL++T EG + K N+ A LA+ S
Sbjct: 159 AEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEA--------------LANCPSVE 204
Query: 151 NAI-------------------SKLTNDPSDV----------ALF-LHTSGTTSRPKGV 179
I +L SD LF L+TSG+T +PKGV
Sbjct: 205 KVIVVRRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGV 263
|
Length = 637 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI-AQAVAFGVPDDKYGEEINCA 455
+D DG ++GR E++ GG +SP V +L +P + A AV G +
Sbjct: 285 WDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLD------GRRLKAF 338
Query: 456 IIPREGSNIDEEEVLRFCKKNVA-----AFKVPKRVFITNELPKTASGKIQ 501
I+ E + +E L + A A P R ELP+T +GK+
Sbjct: 339 IVVAEDA---DEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74
L+++ + V A+ L A G+ GD VA PN E V+ LA
Sbjct: 115 LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLA 158
|
Length = 655 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91
TY +I+E A L+ GI GDVV + V+ V+ + V++A AT + ++ AY P
Sbjct: 272 TYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPP 331
Query: 92 DEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-----ISHATATLLDADSELT-LSLAH 145
YLS ++ + L+ + Q ++ + A L D L SL
Sbjct: 332 ARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEG 391
Query: 146 SESDTNA-ISKLTNDPSDVAL---------FLHTSGTTSRPKGV 179
E+D A L + P+ V + F TSG+ PKGV
Sbjct: 392 GETDVLAPYQALKDTPTGVVVGPDSNPTLSF--TSGSEGIPKGV 433
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 22/236 (9%)
Query: 281 LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS----SNPLPEDGPHKPGSV 336
L+ + S + L P + + A V A +++ T + S +NP P G +
Sbjct: 386 LQCVASTGSPLPPDGFRWVYDEIKADVWLA-SISGGTDICSCFAGANPTL---PVHIGEI 441
Query: 337 -GRPVGQEIAILDEIGVPQEGGAKGE-VCIRG-PNVTKGYKNNPEANK------SAFLFG 387
+G + D G P G GE VC P++ + N+P+ +K +
Sbjct: 442 QAPGLGTAVQSWDPEGKPVTG-EVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGV 500
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
W H GD G + + GR +N G ++ E+ + ++ +++ G
Sbjct: 501 WRH-GDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPD 559
Query: 448 YGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKI 500
G + + G+ +D+ + + R + ++ VP + +P T +GK
Sbjct: 560 GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKR 615
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 57/200 (28%)
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF--------------------------- 389
G GE+ +R + +GY PE N F+ WF
Sbjct: 619 GEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDR 678
Query: 390 --HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447
TGD+G + DG + GR + + G +I E+D L HP + + V V DK
Sbjct: 679 LYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTL-VRRDK 737
Query: 448 YGEEINCA-IIPREGS------------NIDEEEVLR--------------FCKKNVAAF 480
E + I+P++ S + V++ + KK + ++
Sbjct: 738 DEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSY 797
Query: 481 KVPKRVFITNELPKTASGKI 500
+P + +LP +GK+
Sbjct: 798 AIPTVIVPLKKLPLNPNGKV 817
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 47/181 (25%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++++ + V R A+ L G+ GD VA PN E VI LA A + A ++
Sbjct: 87 ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLA-------TASIGAIWS 139
Query: 91 ---PDEFEF-------YLSDSESKLLLTPAEG-----------NAAAQAAAS-------- 121
PD F E K+L +G A+
Sbjct: 140 SCSPD---FGVEAVLDRFGQIEPKVLFA-VDGYVYNGKEHDRREKIAEIVKGLPSLEAVV 195
Query: 122 ---KLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALF-LHTSGTTSRPK 177
L+ A L + L SLA + +L P D L+ L++SGTT PK
Sbjct: 196 VVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL---PFDHPLWILYSSGTTGLPK 252
Query: 178 G 178
Sbjct: 253 C 253
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+T S + V R A+ L A G GD +A+ P V VI++LA+I A + ++
Sbjct: 209 MTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFA 268
Query: 91 PDEFEFYLSDSESKLLLT 108
P E L S++K + T
Sbjct: 269 PSEIATRLKISKAKAIFT 286
|
Length = 728 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
KGE+ I+ ++ GY E K+AF G+F TGDI + +G L + R K L+
Sbjct: 541 KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV---- 596
Query: 418 EKISP---IEVDAV--LLSH-PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471
K+S IE D + L S I V +G DD + AII ++D+ + +
Sbjct: 597 -KLSQGEYIETDMLNNLYSQISFINFCVVYG--DDSMDGPL--AII-----SVDKYLLFK 646
Query: 472 FCKKN 476
K +
Sbjct: 647 CLKDD 651
|
Length = 746 |
| >gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 92/385 (23%), Positives = 143/385 (37%), Gaps = 67/385 (17%)
Query: 169 TSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAG 228
T+G K +T A S S L D+ + PL H G+L L + G
Sbjct: 615 TAGGELVAK--QITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGG 672
Query: 229 AAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS 288
+ + L + F Q++ +Y T + + + V+D +P FI
Sbjct: 673 SRIAL--SRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI---- 726
Query: 289 ASLAPVILS-RLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEI 344
S P L R+ EAF A V+E +A T+ + L K GS GRP+ +
Sbjct: 727 GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAV-----LANVSGAKIGSKGRPLPGAGRV 781
Query: 345 A-----------ILDEIGVPQEGGAKGEVCI-----RGPNVTKGYKNNPEANKSAFLFG- 387
+ D+ G + EV + RGP +P A+ +F
Sbjct: 782 ELAAYDPEHDLILEDDRGFVRR-AEVNEVGVLLARARGP-------IDPTASVKRGVFAP 833
Query: 388 ---WFHTGDIGYFDSDGYLHLVGRIKELIN--RGGEKISPIEVDAVLLSHPDIAQAVAFG 442
W T + D DG LV R +I RG P+ + D AV +G
Sbjct: 834 ADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVD--LAVTYG 891
Query: 443 VPDDKYGEEIN-CAIIPREGSNIDEEEVLRFCKKNVAAFKV---PKRVFITNELPKTASG 498
V G ++ A+ R G+ I ++ + +A+ V P V + E+P +A+
Sbjct: 892 VEVG--GRQLAVAAVTLRPGAAITAADL----TEALASLPVGLGPDIVHVVPEIPLSAT- 944
Query: 499 KIQRRIVSEHFLAQVSAAKVPKFGA 523
R VS + AA +PK G
Sbjct: 945 --YRPTVSA-----LRAAGIPKPGR 962
|
Length = 994 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.86 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.85 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.84 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.31 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.24 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 99.03 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 98.48 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 98.25 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 98.25 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.57 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.06 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.44 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.18 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.64 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-81 Score=609.73 Aligned_cols=493 Identities=38% Similarity=0.590 Sum_probs=429.6
Q ss_pred hcCCc-eeEEECC--cccccHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCC
Q 009867 16 QFSSK-RALSVSG--KFDLTYSRIHELVERAASRLVAAG--INAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90 (523)
Q Consensus 16 ~~p~~-~a~~~~~--~~~~Ty~el~~~~~~~A~~L~~~g--~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~ 90 (523)
.++++ +.++... ++.+||+|+++++.++|..|.++| +++||+|++++||++++..+++||+++|+++.+++|.+.
T Consensus 28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~ 107 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLT 107 (537)
T ss_pred ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccC
Confidence 34444 6666554 379999999999999999999875 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccc-----cc-cccccccccccccCCCCCCCeE
Q 009867 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT-----LS-LAHSESDTNAISKLTNDPSDVA 164 (523)
Q Consensus 91 ~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (523)
..++.+.++.+++++++++.+..+.+.................+...... .. ................+.+|++
T Consensus 108 ~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~ 187 (537)
T KOG1176|consen 108 ASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRPVSEDDTA 187 (537)
T ss_pred HHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcccccCCCCCeE
Confidence 99999999999999999999999888777655442211111110000000 00 0000000000003445679999
Q ss_pred EEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHH
Q 009867 165 LFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244 (523)
Q Consensus 165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 244 (523)
+++|||||||.||||.+||++++...........++..++.++.+|++|.+|+...+.+.+..|++++... .+++..+
T Consensus 188 ~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~--~f~~~~~ 265 (537)
T KOG1176|consen 188 AILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR--KFDAELF 265 (537)
T ss_pred EEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC--CCCHHHH
Confidence 99999999999999999999999988777777778889999999999999999997777888888888877 7799999
Q ss_pred HHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC-CceeccccccccccccccC
Q 009867 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSN 323 (523)
Q Consensus 245 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~ 323 (523)
++.+++|++|++.++|.++..+++.+. ....++++++.+.+||++++++..+++.+.++ ..+.+.||+||+++.++.+
T Consensus 266 ~~~i~kykvt~~~~vP~~~~~l~~~p~-~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~ 344 (537)
T KOG1176|consen 266 LDLIEKYKVTHLFLVPPVLNMLAKSPI-VKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSN 344 (537)
T ss_pred HHHHHHhCEEEEEcChHHHHHHhcCCc-cCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeec
Confidence 999999999999999999999999873 33467999999999999999999999999997 8899999999999888888
Q ss_pred CCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-CeeeeCceeeEcCCC
Q 009867 324 PLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDG 401 (523)
Q Consensus 324 ~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~~~TGD~~~~~~~g 401 (523)
...+. ...+++|++ ++..+.+.+++|+.++.++.||||++|+.++.||+++|+.|++.|.+ |||+|||+|++|+||
T Consensus 345 ~~~~e--~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG 422 (537)
T KOG1176|consen 345 DWGPE--RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDG 422 (537)
T ss_pred CCCcc--CcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCC
Confidence 75443 578999999 58889999999999999999999999999999999999999999976 999999999999999
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCC
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 481 (523)
++++.+|++|+||.+|++|+|.|||++|.+||.|.|++||+.+++..|+.+.++|+.+++...+++++.+++++++++|+
T Consensus 423 ~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~ 502 (537)
T KOG1176|consen 423 YLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYK 502 (537)
T ss_pred eEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 482 ~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+|..++++++||+|++||++|+.|++++.+.-
T Consensus 503 ~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~ 534 (537)
T KOG1176|consen 503 LPGGVVFVDELPKTPNGKILRRKLRDIAKKLG 534 (537)
T ss_pred ccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998753
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-80 Score=559.17 Aligned_cols=511 Identities=28% Similarity=0.424 Sum_probs=442.7
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
...|+++++...+++.||+.|.+.. .+.+.||+|+.+.++.+|++|.++|+++||+|.++.||+.+|+.++|||+++|.
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~ 127 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL 127 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence 4579999999999999999999864 447899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhH-----HHHHHhhcc------ccc------ceeeeecCCccc--cc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA-----AQAAASKLN------ISH------ATATLLDADSEL--TL 141 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~~~~~~~------~~~------~~~~~~~~~~~~--~~ 141 (523)
+.++++|++...++++.|++.+++++++.+..... +.....+.. ++. ..+.+.+.+... .+
T Consensus 128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~ 207 (596)
T KOG1177|consen 128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAF 207 (596)
T ss_pred EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCce
Confidence 99999999999999999999999999998765432 222222211 111 111112211111 11
Q ss_pred ccccc-----ccccc--ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhH
Q 009867 142 SLAHS-----ESDTN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHV 214 (523)
Q Consensus 142 ~~~~~-----~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (523)
.+.+. ..... ........+++++.+.|||||||.||++.+||-+++++.......+++.+.+++++..|++|.
T Consensus 208 ~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~ 287 (596)
T KOG1177|consen 208 LLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHC 287 (596)
T ss_pred ehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHH
Confidence 11111 00001 122345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHH
Q 009867 215 HGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294 (523)
Q Consensus 215 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~ 294 (523)
.|...+.++++..|+++++|.. .+++...++.|.++++|.++++|+++..+++...... .+++++|.++.+|++++++
T Consensus 288 ~G~~~~~ma~l~~gat~Vfp~~-~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~-~~~s~lr~~vigGa~~s~e 365 (596)
T KOG1177|consen 288 FGCVLGVMAALMHGATIVFPAP-SFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ-VDLSSLRKGVIGGAPVSPE 365 (596)
T ss_pred HHHHHHHHHHHHhCcEEEeeCC-CCChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc-CchhhhhhheeCCCCCCHH
Confidence 9999999999999999999876 7899999999999999999999999999998877665 6689999999999999999
Q ss_pred HHHHHHHHhCCc-eeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccc
Q 009867 295 ILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372 (523)
Q Consensus 295 ~~~~~~~~~~~~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~g 372 (523)
+.+.+.+..+.. +...||+||+++..+.............++|+. ++.+..++|+.|..++.|..|||+++|++.+.|
T Consensus 366 Llk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~ 445 (596)
T KOG1177|consen 366 LLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLG 445 (596)
T ss_pred HHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEechhhee
Confidence 999999987655 668899999998877766544445566788888 688999999999999999999999999999999
Q ss_pred cCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 373 YKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 373 y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
||++++.+.+.. .|.||+|||.+.+|++|.+++.||.+|+|+.+|++|+|.|||+.|.++|.|.++.|++++++..++.
T Consensus 446 Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~ 525 (596)
T KOG1177|consen 446 YWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEE 525 (596)
T ss_pred ecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccce
Confidence 999999888877 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCC--CCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 452 INCAIIPREGSN--IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 452 ~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++++|-+..+.. ...++|..+|+..+..+.+|+.+++++++|+|.+|||+|-+++++++.+++
T Consensus 526 VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l~ 590 (596)
T KOG1177|consen 526 VCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHLG 590 (596)
T ss_pred EEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhcc
Confidence 999999877654 478999999999999999999999999999999999999999999997664
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=581.69 Aligned_cols=493 Identities=28% Similarity=0.420 Sum_probs=416.3
Q ss_pred HHHHHHhh-cCCceeEEECCc----ccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 9 LLNQVIDQ-FSSKRALSVSGK----FDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 9 ~l~~~a~~-~p~~~a~~~~~~----~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+++..... .+++.|+++.+. +++||+||++.++++|+.|++. |+ +||+|++++|+.+|.++++|||+++|++.
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 46666653 578999997642 6899999999999999999974 67 99999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccce--eeeecCCccccccccccc-ccccccccCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHAT--ATLLDADSELTLSLAHSE-SDTNAISKLTND 159 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 159 (523)
+|+.+.++.+.+..++++++++++|+.+................... +.+..... ..+.+.. ...........+
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~---~~~~~~~~~~~~~~~~~~~~ 169 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG---LWYDEAVEKASEKFEFEPLP 169 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc---ccHHHHhhccCCCCCccccC
Confidence 99999999999999999999999999877664332211110000000 11111111 1111111 111222233468
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHH-HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
.+|+++++|||||||+||+|+++|..++..... ....+.+.++|++++..+..|++|....++++|..|+++++.++..
T Consensus 170 ~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p 249 (528)
T COG0365 170 ADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRP 249 (528)
T ss_pred CCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCC
Confidence 899999999999999999999999987766554 4556778899999999999999999999999999999999877654
Q ss_pred C-ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 239 F-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
+ ++..+++.++++++|.+++.|+.+++|++... ....++++||.+.+.||+++|+.++++.+.+|++|.+.||+||++
T Consensus 250 ~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg 328 (528)
T COG0365 250 FYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETG 328 (528)
T ss_pred CCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccC
Confidence 4 48999999999999999999999999999876 445678999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCC--CcccccCCChhhhhhhccCCeeeeCce
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGP--NVTKGYKNNPEANKSAFLFGWFHTGDI 394 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~~~~~TGD~ 394 (523)
.++..... ....++.|+| +|+++.++|++|++++.|+ |+|+++.+ +++.+||++++...+.+.+.||.|||.
T Consensus 329 ~~~~~~~~----~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~ 403 (528)
T COG0365 329 MGFIAGRP----PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDW 403 (528)
T ss_pred ccccCCCC----CcCCCCCCCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCce
Confidence 55555432 3345555999 8999999998899999999 99999997 899999999998888886669999999
Q ss_pred eeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC--HHHHHHH
Q 009867 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID--EEEVLRF 472 (523)
Q Consensus 395 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~ 472 (523)
+++|+||+++|.||.||+||+.|+++.+.|||++|.+||.|.|++|++.+++..++.+.+||+++++...+ .++|+++
T Consensus 404 ~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~ 483 (528)
T COG0365 404 AERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRH 483 (528)
T ss_pred eEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875433 3567778
Q ss_pred HHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 473 ~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+++.+.++..|+.|+++++||+|.|||+.|+.|++.+.+
T Consensus 484 vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 484 VARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred HHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 877888899999999999999999999999999999885
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=601.38 Aligned_cols=505 Identities=41% Similarity=0.654 Sum_probs=433.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcc-cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKF-DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~-~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
...|+.+.+.+.++.+|+++|+++.+.. ++||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Ga 88 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGA 88 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCE
Confidence 3578999999999999999999988742 299999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccc--cccccc--cccccccccC
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT--LSLAHS--ESDTNAISKL 156 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 156 (523)
+++|++|.++.+++.++++.++++.++++....+............... ......... ..+... ..........
T Consensus 89 v~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (534)
T COG0318 89 VAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVV--LLVGDADDRLPITLEALAAEGPGPDADAR 166 (534)
T ss_pred EEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEE--EecccccccccccHHHHhhccCCcccccC
Confidence 9999999999999999999999999999988444444443332111111 111110000 000000 0000111111
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc--cCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
...++++++++|||||||.||+|++||+++..+...+...++ +++.|++++++|++|.+|+...++..+..|+++++.
T Consensus 167 ~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~ 246 (534)
T COG0318 167 PVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLL 246 (534)
T ss_pred CCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeC
Confidence 156899999999999999999999999999999988888888 899999999999999999999888889999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCC-CcceEEeccCCCCHHHHHHHHHHhC-Cceecccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP-KLRFIRSCSASLAPVILSRLEEAFG-APVLEAYA 312 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~-~l~~i~~~g~~~~~~~~~~~~~~~~-~~v~~~yG 312 (523)
.+..+++..++..+.++++|+++++|+++..+++....... .+. ++|.++.||+++++++.+++.+.|+ ..+++.||
T Consensus 247 ~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~-~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG 325 (534)
T COG0318 247 SPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD-DLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYG 325 (534)
T ss_pred CCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc-ccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeec
Confidence 86678999999999999999999999999999888766542 234 4999999999999999999999997 57999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCC-ccCCCceeEEEEeCCCcccccCCChhhhhhhccC-Cee
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGV-PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWF 389 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~-~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~~ 389 (523)
+||+++.++...... .....+++|+| ++++++++|.++. +++ |+.|||+++||+++.||+++|+.+...|.+ |||
T Consensus 326 ~TE~~~~~~~~~~~~-~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~ 403 (534)
T COG0318 326 LTETSPVVTINPPDD-LLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWL 403 (534)
T ss_pred ccccCceeecCCCch-hhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCee
Confidence 999998777765432 12355667888 7999999996554 555 999999999999999999999999998875 999
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC--CCCCHH
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG--SNIDEE 467 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 467 (523)
+|||+|++|++|.+++.||.+|+|+.+|++|+|.+||+++.+++.|.+++|++++++..++.++++++.+++ ...+.+
T Consensus 404 ~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~ 483 (534)
T COG0318 404 RTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAE 483 (534)
T ss_pred eecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 345789
Q ss_pred HHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 468 ~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++.++++++++.+++|+.++++++||+|++||++|+.|++++..
T Consensus 484 ~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 484 ELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred HHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-73 Score=582.17 Aligned_cols=494 Identities=29% Similarity=0.454 Sum_probs=418.6
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
.|+.++|.++++++|+++|+++.+ +++||+||+++++++|++|.+.|+++||+|+++++|+.++++++|||+++|++++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~-~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 127 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDER-GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII 127 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECC-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence 388999999999999999999876 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc---ccccccccccccccccccCCCCC
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---ELTLSLAHSESDTNAISKLTNDP 160 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
|+++.++.+++.++++.+++++++++++....+..................... .....+.+...... ........
T Consensus 128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 206 (549)
T PRK07788 128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSS-TAPLPKPP 206 (549)
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCC-CCCCCCCC
Confidence 999999999999999999999999998766554433222111111100000000 00000000000000 11112235
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
++.++++|||||||.||+|.++|.++...+......+++.++++++...|++|..|+.. ++.++..|+++++.. .++
T Consensus 207 ~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~--~~~ 283 (549)
T PRK07788 207 KPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRR--RFD 283 (549)
T ss_pred CCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECC--CCC
Confidence 67899999999999999999999999998888888888999999999999999999865 677899999999875 678
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
+..+++.++++++|++.++|+++..+++.... .....++++|.+++||+.+++++.+.+.+.|++.+++.||+||++..
T Consensus 284 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~ 363 (549)
T PRK07788 284 PEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFA 363 (549)
T ss_pred HHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchh
Confidence 99999999999999999999999999877543 12234689999999999999999999999999999999999999865
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
+.... .+.....+++|+| ++++++++|+++++++.|+.|||+++|++++.||++++.. ...+|||+|||+++++
T Consensus 364 ~~~~~--~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~ 438 (549)
T PRK07788 364 TIATP--EDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFD 438 (549)
T ss_pred hccCh--hhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEc
Confidence 54432 1223355789999 7899999999999999999999999999999999988765 3457999999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCc
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA 478 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 478 (523)
++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.++++++++++|+
T Consensus 439 ~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~ 518 (549)
T PRK07788 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLA 518 (549)
T ss_pred CCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999888899999999888777888999999999999
Q ss_pred CCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 479 AFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 479 ~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+|++|..+++++++|+|++||++|++|++
T Consensus 519 ~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 547 (549)
T PRK07788 519 RYKVPRDVVFLDELPRNPTGKVLKRELRE 547 (549)
T ss_pred cCCCCcEEEEeCCCCCCCCcCEeHHHhhc
Confidence 99999999999999999999999999875
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=508.55 Aligned_cols=503 Identities=27% Similarity=0.432 Sum_probs=434.1
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.++|+.++|..+|+++|+++|+++.+ +++||+||.++++++|.+|+++|+++||+|.+.+||..++++++||++++|+.
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~~-~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~ 104 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDGE-RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVA 104 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecCc-ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence 46899999999999999999999988 58999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcc-cccceeeeecCCccccccccccccccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLN-ISHATATLLDADSELTLSLAHSESDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
+|.--|+-...++.+..+...++.+|++.... +...+...+.. +.+.++. .+.+.................+.
T Consensus 105 PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~-ge~~~~~~~~~~~~~~a~~~~~a 183 (542)
T COG1021 105 PVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVA-GEAEHPSVLEAALCHPAGLFTPA 183 (542)
T ss_pred hhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEc-cCCCCcchhhhhhhCccccCCcC
Confidence 99988888899999999999999999886433 33333333332 3333332 11111111111111111122233
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHH-HHHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGML-AGLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~~l~~g~~~~~~ 234 (523)
...+++++++++.+.||||.||.|..+|.+...+...-.+..+++..++.++.+|..|.+-+. -+.++.++.|+++|+.
T Consensus 184 ~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla 263 (542)
T COG1021 184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLA 263 (542)
T ss_pred CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEEC
Confidence 456778999999999999999999999999999888888889999999999999998877653 3688999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ ..++......|+++++|+..++|.+...|++..+... .++++||.+-+||..+++...+++...+||.+-+.|||.
T Consensus 264 ~--~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~-~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMA 340 (542)
T COG1021 264 P--DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER-ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMA 340 (542)
T ss_pred C--CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc-CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhh
Confidence 7 6789999999999999999999999999999887755 679999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeee
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT 391 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~T 391 (523)
|.. +..... +.....-..+.|+| +..+++|+|++|+++++||+|+|.++||..+.|||+.|+-++..| .+|+|+|
T Consensus 341 EGL-vnyTRL-DDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrs 418 (542)
T COG1021 341 EGL-VNYTRL-DDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418 (542)
T ss_pred hhh-hccccc-CCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceec
Confidence 954 333332 33333445678999 688999999999999999999999999999999999999999999 7899999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+++.+++|++.+.||.+|+|+.+|++|-.+|||+.|.+||.|.++.++..+++..|++..++++.++.. ....++++
T Consensus 419 GD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~~qlr~ 497 (542)
T COG1021 419 GDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRAAQLRR 497 (542)
T ss_pred CceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987643 77899999
Q ss_pred HHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 472 FCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 472 ~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++.+. +..|++|+.|.+++.+|+|+-||||++.|++++...
T Consensus 498 ~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 498 FLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred HHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence 99865 899999999999999999999999999999987653
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-71 Score=577.25 Aligned_cols=506 Identities=31% Similarity=0.454 Sum_probs=418.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC-------CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS-------GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~ 76 (523)
.|+.++|.+.|+++|+++|+++. +.+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 58999999999999999999863 23689999999999999999999999999999999999999999999999
Q ss_pred HhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcc-cccceeeeecCCc-------------
Q 009867 77 RARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-ISHATATLLDADS------------- 137 (523)
Q Consensus 77 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~------------- 137 (523)
++| +++|+++.++.+++.++++.++++++|++..... .......... +...+. ......
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~ 182 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVE-VDLARYLPGPKRLAVPLIR 182 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEE-ecCcccccccccccccccc
Confidence 999 5699999999999999999999999999865431 2222222111 111111 111000
Q ss_pred ----ccccccccc--ccc-ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcC
Q 009867 138 ----ELTLSLAHS--ESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210 (523)
Q Consensus 138 ----~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p 210 (523)
.....+... ... ..........++++++++|||||||.||+|.++|.++..........+++.+++++++.+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p 262 (632)
T PRK07529 183 RKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLP 262 (632)
T ss_pred cccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecC
Confidence 000000000 000 0011112235789999999999999999999999999988877777788899999999999
Q ss_pred hhhHHHHHHHHHHhhhcCcEEEeCCCCCCC----hhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEe
Q 009867 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRS 286 (523)
Q Consensus 211 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~ 286 (523)
++|.++....++.++..|++++++++..+. ...+++.++++++|++.++|+++..|++..... .+++++|.+++
T Consensus 263 l~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~slr~v~~ 340 (632)
T PRK07529 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG--HDISSLRYALC 340 (632)
T ss_pred chhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC--CCccceEEEEE
Confidence 999999988899999999999997643332 357889999999999999999999998765432 35789999999
Q ss_pred ccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEE--ECCCC---CccCCCcee
Q 009867 287 CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAI--LDEIG---VPQEGGAKG 360 (523)
Q Consensus 287 ~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i--~d~~~---~~~~~g~~G 360 (523)
||+++++++.+++++.+|+++++.||+||++.++..+.. ......+++|+| ++..+++ +|++| .+++.|+.|
T Consensus 341 gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~--~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~G 418 (632)
T PRK07529 341 GAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPP--DGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVG 418 (632)
T ss_pred cCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCc--cccccCCCcccccCCceEEEEEcCCCCcccccCCCCCce
Confidence 999999999999999999999999999999876655432 223356789999 6777776 46777 789999999
Q ss_pred EEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEE
Q 009867 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440 (523)
Q Consensus 361 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 440 (523)
||+++|++++.||++++......+.+|||+|||+++++++|.+++.||.+|+||.+|++|+|.+||++|.++|+|.+++|
T Consensus 419 el~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~v 498 (632)
T PRK07529 419 VLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAA 498 (632)
T ss_pred EEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999876544333368899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCc-CCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 441 FGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA-AFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 441 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
++.+++..++.++++|++.++...+.++++++++++++ .+++|..++++++||+|++||++|+.|++.+.+..-.
T Consensus 499 vg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~~~~ 574 (632)
T PRK07529 499 VGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIRRVLR 574 (632)
T ss_pred EeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 99999888899999999988887888999999999997 4799999999999999999999999999988765443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-72 Score=580.58 Aligned_cols=504 Identities=21% Similarity=0.255 Sum_probs=402.8
Q ss_pred HHHHHHHHHhh--cCCceeEEEC---C--cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 6 LIGLLNQVIDQ--FSSKRALSVS---G--KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 6 i~~~l~~~a~~--~p~~~a~~~~---~--~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
..++++++++. +|+++|+++. + .+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++
T Consensus 61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45677777654 7999999873 1 258999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccc---------hhHHHHHHhhcc--cccceeeeecCC---cc------
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG---------NAAAQAAASKLN--ISHATATLLDAD---SE------ 138 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~---~~------ 138 (523)
|++++|+++.++.+++.++|++++++++|+++.. .+.+........ ....+....... ..
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 220 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET 220 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence 9999999999999999999999999999997532 122222221111 111111100000 00
Q ss_pred -----cccccccccc------cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHH-HHHHHHHHHHHhccCCCceEE
Q 009867 139 -----LTLSLAHSES------DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDSTV 206 (523)
Q Consensus 139 -----~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~ 206 (523)
....+.+... ...........++++++++|||||||.||+|+++|.+ +..........+...++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~ 300 (647)
T PTZ00237 221 IPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVF 300 (647)
T ss_pred cCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000000000 0000112234678999999999999999999999998 444333334455677789999
Q ss_pred EEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC----hhHHHHHHHhcCccEEeechHHHHHHHhcccC----CCCCCC
Q 009867 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS----ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----KPEPVY 278 (523)
Q Consensus 207 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~----~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----~~~~~~ 278 (523)
+..|++|..+.. .++.++..|+++++.++..+. +..+++.++++++|+++++|++++.|++.... ....++
T Consensus 301 ~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l 379 (647)
T PTZ00237 301 SHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDL 379 (647)
T ss_pred EcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCc
Confidence 999998886544 488899999999987653222 57899999999999999999999999875422 122357
Q ss_pred CCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCC
Q 009867 279 PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGG 357 (523)
Q Consensus 279 ~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g 357 (523)
+++|.++++|+++++++.+++.+.+|+++++.||+||+++.+..... ......+++|+| ++.+++++|++|++++.|
T Consensus 380 ~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~--~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~g 457 (647)
T PTZ00237 380 SNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYG--HINIPYNATGVPSIFIKPSILSEDGKELNVN 457 (647)
T ss_pred chheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCC--CCCCCCCCCccCcCCceEEEECCCCCCCCCC
Confidence 89999999999999999999999999999999999999866543321 122234789999 799999999999999999
Q ss_pred ceeEEEEeCC---CcccccCCChhhhhhhcc--CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcC
Q 009867 358 AKGEVCIRGP---NVTKGYKNNPEANKSAFL--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432 (523)
Q Consensus 358 ~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~ 432 (523)
+.|||++++| +++.|||++++.+...|. +|||+|||+|++|++|.+++.||+||+||++|++|+|.+||++|.++
T Consensus 458 e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~ 537 (647)
T PTZ00237 458 EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKH 537 (647)
T ss_pred CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhC
Confidence 9999999986 788999999998887774 79999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCceeEEEEEeCCCC---CCCH----HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHH
Q 009867 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGS---NIDE----EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505 (523)
Q Consensus 433 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l 505 (523)
|.|.+++|++++++..++.++++|++.++. ..+. ++|+++++++|+++++|+.|+++++||+|++||++|+.|
T Consensus 538 p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L 617 (647)
T PTZ00237 538 PLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQII 617 (647)
T ss_pred CCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHH
Confidence 999999999999998889999999987432 2333 456788889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 009867 506 SEHFLAQ 512 (523)
Q Consensus 506 ~~~~~~~ 512 (523)
++++.+.
T Consensus 618 r~~~~~~ 624 (647)
T PTZ00237 618 SKFLNDS 624 (647)
T ss_pred HHHHcCC
Confidence 9987543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=579.23 Aligned_cols=505 Identities=24% Similarity=0.369 Sum_probs=413.6
Q ss_pred HHHHHHHHh-hcCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 7 IGLLNQVID-QFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 7 ~~~l~~~a~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
.++|+++++ .+|+++|+++.. .+++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 467777765 489999998732 26899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhH---------HHHHHhhcc---cccceeeeecCCcc---cccc---
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA---------AQAAASKLN---ISHATATLLDADSE---LTLS--- 142 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~~~~~~~~~---~~~~~~~~~~~~~~---~~~~--- 142 (523)
+++|+++.++.+++.+++++++++++|+++..... +........ .....+........ ....
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 99999999999999999999999999998764321 111111100 00000000010000 0000
Q ss_pred -----ccccccc-ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH-HHHHHHHHhccCCCceEEEEcChhhHH
Q 009867 143 -----LAHSESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVIVLPLFHVH 215 (523)
Q Consensus 143 -----~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 215 (523)
+.+.... ...........+++++++|||||||.||+|+++|.+++. ........+++.++|++++..|++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 330 (666)
T PLN02654 251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWIT 330 (666)
T ss_pred CCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhh
Confidence 0000000 001111224678999999999999999999999999764 345566678899999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCC
Q 009867 216 GMLAGLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLA 292 (523)
Q Consensus 216 g~~~~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~ 292 (523)
+....++.++..|+++++.++. ..++..+++.++++++|+++++|++++.|++.... ....+++++|.++++|++++
T Consensus 331 g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~ 410 (666)
T PLN02654 331 GHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPIN 410 (666)
T ss_pred hhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCC
Confidence 9888789999999999987642 24789999999999999999999999999876532 12245789999999999999
Q ss_pred HHHHHHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--
Q 009867 293 PVILSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG-- 366 (523)
Q Consensus 293 ~~~~~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~-- 366 (523)
++..+++.+.+| +++.+.||+||+++...... ........+++|+| +|++++++|++|++++.++.|||++++
T Consensus 411 ~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~-~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~ 489 (666)
T PLN02654 411 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSW 489 (666)
T ss_pred HHHHHHHHHHhCCCCCceeccccccccCCeeeccC-CCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCC
Confidence 999999999997 78999999999987655432 11223466789999 799999999999999999999999999
Q ss_pred CCcccccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEee
Q 009867 367 PNVTKGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGV 443 (523)
Q Consensus 367 ~~~~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~ 443 (523)
|+++.|||++++.+...+ .+|||+|||++++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|+++
T Consensus 490 p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~ 569 (666)
T PLN02654 490 PGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGI 569 (666)
T ss_pred chhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEee
Confidence 789999999998877654 37999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 444 PDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 444 ~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++..++.+.++|++.++...+. ++|+++++++|+.+++|+.|+++++||+|++||++|+.|++.+.+.
T Consensus 570 ~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~ 641 (666)
T PLN02654 570 EHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 641 (666)
T ss_pred EcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence 99988899999999988755443 4788999999999999999999999999999999999999998754
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=569.55 Aligned_cols=507 Identities=27% Similarity=0.372 Sum_probs=415.6
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.+.++++|+++|++..+ +++||+||+++++++|++|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~ 84 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISGN-RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecCC-ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEE
Confidence 3589999999999999999998766 689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHH-hhcccccceeeeecCCccc------cccccccccc--cccc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA-SKLNISHATATLLDADSEL------TLSLAHSESD--TNAI 153 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~ 153 (523)
+|+++.++.+++.+++++++++++++++.......... .........+...+..... .......... ....
T Consensus 85 vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (563)
T PLN02860 85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTE 164 (563)
T ss_pred EeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCcccccc
Confidence 99999999999999999999999999876533222221 1111000111111100000 0000000000 0001
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
......++++++++|||||||.||+|.++|.++..........+++.++|+++...|++|..++.. ++.++..|+++++
T Consensus 165 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~ 243 (563)
T PLN02860 165 LDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVL 243 (563)
T ss_pred ccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEe
Confidence 111235789999999999999999999999999887777667788999999999999999999865 7889999999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAY 311 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~y 311 (523)
.+ .+++..+++.++++++|++.++|+++..+++..... ....++++|.+++||+.+++++.+.+.+.| +.++++.|
T Consensus 244 ~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y 321 (563)
T PLN02860 244 LP--KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY 321 (563)
T ss_pred cC--CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence 76 678999999999999999999999999998764322 123467999999999999999999999998 78999999
Q ss_pred cccccccccccCCCCCC--------------------CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcc
Q 009867 312 AMTEATHLMSSNPLPED--------------------GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVT 370 (523)
Q Consensus 312 G~tE~~~~~~~~~~~~~--------------------~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~ 370 (523)
|+||+++.+........ ......++|+| ++++++++|++ .|+.|||+++|++++
T Consensus 322 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~~Gel~v~g~~~~ 396 (563)
T PLN02860 322 GMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSRVGRILTRGPHVM 396 (563)
T ss_pred CccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCceeEEEEecCccc
Confidence 99999865543321110 01112367998 78999999864 688999999999999
Q ss_pred cccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCC
Q 009867 371 KGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449 (523)
Q Consensus 371 ~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~ 449 (523)
.||+++++.+...+ .+|||+|||+++++++|.+++.||.+|+||.+|++++|.+||+++.++|+|.+++|++.+++..+
T Consensus 397 ~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~ 476 (563)
T PLN02860 397 LGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLT 476 (563)
T ss_pred ccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCC
Confidence 99999999888877 57999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceeEEEEEeCCCC--------------CCCHHHHHHHHHh-cCcCCCCCcEEEEe-CCcCCCCCccccHHHHHHHHHHhh
Q 009867 450 EEINCAIIPREGS--------------NIDEEEVLRFCKK-NVAAFKVPKRVFIT-NELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 450 ~~~~~~v~~~~~~--------------~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+.+++++++.++. ..+.+.+++++++ .|++|++|..++++ ++||+|++||++|++|++++.+.+
T Consensus 477 ~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~ 556 (563)
T PLN02860 477 EMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHL 556 (563)
T ss_pred ceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHH
Confidence 8999999887652 3456789999987 59999999998775 679999999999999999999888
Q ss_pred hhhcC
Q 009867 514 SAAKV 518 (523)
Q Consensus 514 ~~~~~ 518 (523)
...++
T Consensus 557 ~~~~~ 561 (563)
T PLN02860 557 QSLPS 561 (563)
T ss_pred hcccc
Confidence 76543
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-71 Score=566.41 Aligned_cols=507 Identities=40% Similarity=0.656 Sum_probs=423.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.++|+++++++|+++|+++.++ ..+||+||.++++++|++|.+.|+++||+|+++++|+.++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 35899999999999999999987554 57999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC--ccccc--ccccccccccccccCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTL--SLAHSESDTNAISKLT 157 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~ 157 (523)
++|+++.++.+++.++++.++++++|++............. .... ........ ..... ................
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR-WWPL-TVNVGGDSGPSGGTLSVHLDAATEPTPATSTPE 172 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc-ccce-eeeecccccccccccccccccccCCCccccccC
Confidence 99999999999999999999999999876533211100000 0000 00010000 00000 0000000000011111
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
...++.++++|||||||.||+|.++|.++...+......+++.++|++++.+|++|..++...++.++..|++++++...
T Consensus 173 ~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 252 (534)
T PRK05852 173 GLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARG 252 (534)
T ss_pred CCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCc
Confidence 22467899999999999999999999999998888888889999999999999999999988899999999999997766
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~ 316 (523)
.+++..+++.++++++|+++++|+++..+.+..... .....+++|.+.++|+.+++.+.+.+.+.++.++++.||+||+
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~ 332 (534)
T PRK05852 253 RFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA 332 (534)
T ss_pred CcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCcccc
Confidence 778899999999999999999999999998765432 1123679999999999999999999999999999999999999
Q ss_pred ccccccCCCC-----CCCCCCCCCccccCCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeee
Q 009867 317 THLMSSNPLP-----EDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT 391 (523)
Q Consensus 317 ~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 391 (523)
+..++..... .+.....+..|++++++++++|++|++++.|+.|||+++|+.++.||+++++.+...|.+|||+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~T 412 (534)
T PRK05852 333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRT 412 (534)
T ss_pred chhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCccc
Confidence 8766543321 11112234455567999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||++++|+||.+++.||.+|+++.+|.+++|.+||+++.++++|.+++|++.+++..++.+.++++..++...+.+++.+
T Consensus 413 GD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~ 492 (534)
T PRK05852 413 GDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQ 492 (534)
T ss_pred CceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888887666678899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++.|+.+++|..+++++++|+|++||++|++|+++|..
T Consensus 493 ~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 493 FCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred HHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 9999999999999999999999999999999999998853
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-71 Score=573.32 Aligned_cols=505 Identities=22% Similarity=0.313 Sum_probs=408.3
Q ss_pred HHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 7 IGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 7 ~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.++|+++++++|+++|+++. +.+++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 55 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 55 HNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 56788888889999999872 1268999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc-cccceeeeecCCccc------cccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDADSEL------TLSLAH 145 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 145 (523)
++|+++.++.+++.+++++++++++|+++... ..+........ .....+.+....... ...+..
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAA 214 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHH
Confidence 99999999999999999999999999976432 11111111111 011111111110000 000000
Q ss_pred cccc--ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHH-HHHHHHHhccCCCceEEEEcChhhHHHHHHHHH
Q 009867 146 SESD--TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAAS-VSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLL 222 (523)
Q Consensus 146 ~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 222 (523)
.... ....+.....++++++++|||||||.||+|+++|.++... .......+++.++|++++..|++|..+....++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~ 294 (628)
T TIGR02316 215 LRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVY 294 (628)
T ss_pred HhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHH
Confidence 0000 0111112245789999999999999999999999997644 344556678899999999999999998877789
Q ss_pred HhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHH
Q 009867 223 SSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 223 ~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~ 299 (523)
.++..|+++++.++. ..++..+++.++++++|+++++|++++.|.+.... ....+++++|.++++|+++++++.+++
T Consensus 295 ~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~ 374 (628)
T TIGR02316 295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWI 374 (628)
T ss_pred HHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHH
Confidence 999999999987642 34788999999999999999999999998875432 122457899999999999999999999
Q ss_pred HHHhCCceeccccccccccccccCCCC-CCCCCCCCCcccc-CCcEEEEECC-CCCccCCCceeEEEEeCC---Cccccc
Q 009867 300 EEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRP-VGQEIAILDE-IGVPQEGGAKGEVCIRGP---NVTKGY 373 (523)
Q Consensus 300 ~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~~~g~~-~~~~~~i~d~-~~~~~~~g~~Gel~v~~~---~~~~gy 373 (523)
.+.++..+++.||+||++..++..... .......+++|+| +|++++++|+ +|++++.|+.|||+++|| +.+.||
T Consensus 375 ~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~ 454 (628)
T TIGR02316 375 TDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTV 454 (628)
T ss_pred HHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccc
Confidence 999999999999999998544332211 1112345788999 7999999996 799999999999999998 467899
Q ss_pred CCChhhhhhhc----cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCC
Q 009867 374 KNNPEANKSAF----LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449 (523)
Q Consensus 374 ~~~~~~~~~~~----~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~ 449 (523)
+++++.....+ .++||+|||+|++|+||.++++||.||+||++|++|+|.+||++|.++|+|.+++|++++++..+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g 534 (628)
T TIGR02316 455 WGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKG 534 (628)
T ss_pred cCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence 99887665543 46799999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceeEEEEEeCCCCCC--------CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 450 EEINCAIIPREGSNI--------DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 450 ~~~~~~v~~~~~~~~--------~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+.++++|++.++... ..++|+++++++|++|++|..++++++||+|++||++|+.|++.+.+
T Consensus 535 ~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 535 QVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred eEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 999999998765432 24679999999999999999999999999999999999999988764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=571.64 Aligned_cols=505 Identities=25% Similarity=0.389 Sum_probs=414.1
Q ss_pred HHHHHHHHHhhcCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 6 LIGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 6 i~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
..++|+++++.+|+++|+++.+ .+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 3567778888899999998643 15899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc--cccceeeeecCCccc------cccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN--ISHATATLLDADSEL------TLSL 143 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~ 143 (523)
+++|+++.++.+++.+++++++++++|+++... ..+.......+ +..... ........ ...+
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV-VRRTGNPVPWVEGRDVWW 217 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE-EcCCCCCcCccccccccH
Confidence 999999999999999999999999999987532 11222222111 111111 11000000 0000
Q ss_pred cccc-ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHHHH
Q 009867 144 AHSE-SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLAGL 221 (523)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 221 (523)
.+.. ............++++++++|||||||.||+|+++|.++..... .....+++.++|++++..|++|..+....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~ 297 (625)
T TIGR02188 218 HDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV 297 (625)
T ss_pred HHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHH
Confidence 0000 00011112234678999999999999999999999999765443 344556888999999999999999887778
Q ss_pred HHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHH
Q 009867 222 LSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSR 298 (523)
Q Consensus 222 ~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~ 298 (523)
+.++..|+++++.++. ..++..+++.++++++|+++++|++++.|.+..... ...+++++|.++++|+++++++.++
T Consensus 298 ~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 377 (625)
T TIGR02188 298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMW 377 (625)
T ss_pred HHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHH
Confidence 9999999999886532 347899999999999999999999999998765332 2235789999999999999999999
Q ss_pred HHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccC-CCceeEEEEeC--CCccc
Q 009867 299 LEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQE-GGAKGEVCIRG--PNVTK 371 (523)
Q Consensus 299 ~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~-~g~~Gel~v~~--~~~~~ 371 (523)
+.+.++ +++++.||+||+++.+...... ......+++|+| +|++++++|++|.+++ .|+.|||++++ |+++.
T Consensus 378 ~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~-~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~ 456 (625)
T TIGR02188 378 YYKVVGKERCPIVDTWWQTETGGIMITPLPG-ATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLR 456 (625)
T ss_pred HHHHcCCCCCceEecccccccCCceeecCCC-CCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccc
Confidence 999885 7899999999998775544321 223456789999 7999999999999999 99999999999 58999
Q ss_pred ccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCC
Q 009867 372 GYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448 (523)
Q Consensus 372 gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 448 (523)
|||++++.+...+ .+|||+|||++++|++|.+++.||+||+||++|++++|.+||++|.++|+|.+++|++.+++..
T Consensus 457 gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~ 536 (625)
T TIGR02188 457 TIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIK 536 (625)
T ss_pred cccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCC
Confidence 9999998776655 4789999999999999999999999999999999999999999999999999999999999888
Q ss_pred CceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 449 GEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 449 ~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++.++++|++.++...+. +++++++++.|+++++|+.|+++++||+|++||++|+.|++.+...
T Consensus 537 g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 537 GQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred CeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 899999999887755443 6799999999999999999999999999999999999999987654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=560.32 Aligned_cols=503 Identities=29% Similarity=0.459 Sum_probs=423.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
..|+.+.|++.++.+|+++|+++.+ .+++||+||+++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4689999999999999999998754 15899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcc-cccceeeeecCCcccccc------ccc
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLN-ISHATATLLDADSELTLS------LAH 145 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~ 145 (523)
+|++++|++|.++.+++.++++.++++++++++... .....+..... +..... ........... +..
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 181 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVV-VGGDGADSFEALLITPAWEQ 181 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEE-ecCCCccCHHHHhhCCcccc
Confidence 999999999999999999999999999999987642 11111211111 111111 11100000000 000
Q ss_pred ccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
...............+++++++|||||||.||+|.++|.++...+......+++.++++++..+|++|..++...++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence 00000111112345689999999999999999999999999988888888888999999999999999999988899999
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..|+++++.+ ..++..+++.++++++|++.++|.++..+........ ..+++++.++++|+.+++++.+.+.+.+++
T Consensus 262 ~~G~~~~~~~--~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~ 338 (547)
T PRK13295 262 MLGATAVLQD--IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG-RPVSSLRTFLCAGAPIPGALVERARAALGA 338 (547)
T ss_pred HcCCeEEeCC--CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC-CCcccceEEEEecCCCCHHHHHHHHHHhCC
Confidence 9999999876 6689999999999999999999999999987654432 457899999999999999999999999999
Q ss_pred ceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc
Q 009867 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 306 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 384 (523)
++++.||+||++.+.+.+... .......++|+| +++.++++|+++++++.|+.|||+|+|++++.||+++++.+...
T Consensus 339 ~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~- 416 (547)
T PRK13295 339 KIVSAWGMTENGAVTLTKLDD-PDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD- 416 (547)
T ss_pred CeEEeccCCCCCCeeeccCCC-cchhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC-
Confidence 999999999998765544321 112234578888 78999999999999999999999999999999999998887765
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||+++++++|.+++.||.+++++.+|++++|.+||++|.++++|.+++|++.+++..++.+.+++++.++...
T Consensus 417 ~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 496 (547)
T PRK13295 417 ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL 496 (547)
T ss_pred CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999988888889999998877666
Q ss_pred CHHHHHHHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 465 DEEEVLRFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 465 ~~~~l~~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+.+++++++++ .++++++|..++++++||+|++||++|++|++++.+
T Consensus 497 ~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 497 DFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544 (547)
T ss_pred CHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence 77889999986 799999999999999999999999999999988765
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=559.92 Aligned_cols=499 Identities=20% Similarity=0.283 Sum_probs=402.9
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
...++.+.|.+.++++|+++|+.+.+..++||+||.++++++|+.|.+ .+||+|+++++|++++++++|||+++|++
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v 93 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKI 93 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence 356899999999999999999987654689999999999999999987 38999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhh-cccccceeeeecCCcccc-ccc---cc-cccccc----
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK-LNISHATATLLDADSELT-LSL---AH-SESDTN---- 151 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~---~~-~~~~~~---- 151 (523)
++|+++.++.+++.++|+.+++++++++......+...... .......+...+...... ... .. ...+..
T Consensus 94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (539)
T PRK06334 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFEWLMR 173 (539)
T ss_pred eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCchhhhh
Confidence 99999999999999999999999999987655443332211 000001111111000000 000 00 000000
Q ss_pred ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEE
Q 009867 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231 (523)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 231 (523)
........++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|.+++...++.++..|+++
T Consensus 174 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~v 253 (539)
T PRK06334 174 WFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPV 253 (539)
T ss_pred cccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeE
Confidence 00112346789999999999999999999999999988877777888899999999999999999887788899999998
Q ss_pred EeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecc
Q 009867 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEA 310 (523)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~ 310 (523)
++... .+++..+++.++++++|++.++|+++..+++...... ..++++|.+++||+++++++.+++.+.+ ++.+++.
T Consensus 254 v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~ 331 (539)
T PRK06334 254 VFAYN-PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE-SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQG 331 (539)
T ss_pred EEecC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-cccccccEEEECCccCCHHHHHHHHHHCCCCeEEec
Confidence 88653 4689999999999999999999999999987654332 4578999999999999999999999988 6889999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc--cC
Q 009867 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF--LF 386 (523)
Q Consensus 311 yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~ 386 (523)
||+||++.+++.... ......+++|+| ++++++++| +++.+++.|+.|||+++|++++.||+++++.+.... .+
T Consensus 332 YG~TE~~~~~~~~~~--~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~ 409 (539)
T PRK06334 332 YGTTECSPVITINTV--NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGE 409 (539)
T ss_pred ccccccCceEEeccC--CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCc
Confidence 999999877665432 122334678999 789999999 568899999999999999999999999988654322 25
Q ss_pred CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCcee------eEEEeecCCCCCceeEEEEEeCC
Q 009867 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQ------AVAFGVPDDKYGEEINCAIIPRE 460 (523)
Q Consensus 387 ~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~ 460 (523)
+||+|||+|++|++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+ ++|++.++.. ..+.++++..
T Consensus 410 ~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~- 486 (539)
T PRK06334 410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFP- 486 (539)
T ss_pred eeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEecc-
Confidence 799999999999999999999999999999999999999999999999987 6777766432 2333444321
Q ss_pred CCCCCHHHHHHHHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 461 GSNIDEEEVLRFCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 461 ~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
.+.+++++++++. ++.|+.|..++++++||+|++||++|+.|++......
T Consensus 487 ---~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 537 (539)
T PRK06334 487 ---TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSLF 537 (539)
T ss_pred ---CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHhh
Confidence 3567899999886 7899999999999999999999999999998866543
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-70 Score=566.86 Aligned_cols=504 Identities=25% Similarity=0.390 Sum_probs=412.4
Q ss_pred HHHHHHHHhhcCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 7 IGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 7 ~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.++|+++++++|+++|+++.+ .+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 467888888999999998643 257999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc-cccceeeeecCCccc------cccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDADSEL------TLSLAH 145 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 145 (523)
++|++|.++.+++.++++.++++++|+++... ..+........ +..... ........ ...+.+
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 228 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIV-VRRTGGDVDWVEGRDLWWHE 228 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEE-EcCCCCCcCcCCCCcccHHH
Confidence 99999999999999999999999999986542 11111111111 111111 11000000 000000
Q ss_pred cc-ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHHHHHH
Q 009867 146 SE-SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLS 223 (523)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 223 (523)
.. .............+++++++|||||||.||+|+++|.+++.... .....+++.++|++++..|++|..+....++.
T Consensus 229 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 308 (637)
T PRK00174 229 LVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYG 308 (637)
T ss_pred HHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHH
Confidence 00 00111112234578999999999999999999999999875443 34445688889999999999999988777899
Q ss_pred hhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHH
Q 009867 224 SFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLE 300 (523)
Q Consensus 224 ~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~ 300 (523)
++..|+++++.++. ..++..+++.++++++|++.++|++++.+++..... ...+++++|.++++|+++++++.+++.
T Consensus 309 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~ 388 (637)
T PRK00174 309 PLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYY 388 (637)
T ss_pred HHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHH
Confidence 99999999886532 247889999999999999999999999998765432 223468999999999999999999999
Q ss_pred HHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--CCcccccC
Q 009867 301 EAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYK 374 (523)
Q Consensus 301 ~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~ 374 (523)
+.++ +++++.||+||+++.+..... .......+++|+| +|++++++|++|++++.|+.|||+++| |+++.||+
T Consensus 389 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~ 467 (637)
T PRK00174 389 KVVGGERCPIVDTWWQTETGGIMITPLP-GATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIY 467 (637)
T ss_pred HHhCCCCCceEecccccccCCceEecCC-CCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCccccccc
Confidence 8885 789999999999876554321 1122345689999 799999999999999999999999999 68999999
Q ss_pred CChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 375 NNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 375 ~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
++++.+...+ .+|||+|||+++++++|.+++.||.||+||++|++|+|.+||++|.++++|.+++|++.+++..++.
T Consensus 468 ~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~ 547 (637)
T PRK00174 468 GDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQG 547 (637)
T ss_pred CCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeE
Confidence 9998776655 4789999999999999999999999999999999999999999999999999999999999888899
Q ss_pred eEEEEEeCCCCCCC---HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 452 INCAIIPREGSNID---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 452 ~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++++++.++...+ .++|+++++++|+.+++|..++++++||+|++||++|+.|++.+.+.
T Consensus 548 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 548 IYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 99999988765444 46899999999999999999999999999999999999999887654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-71 Score=574.14 Aligned_cols=505 Identities=25% Similarity=0.373 Sum_probs=403.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEE---CCc-----ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSV---SGK-----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~---~~~-----~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
.|+.++|.++++++|+++|+.. .++ +.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||
T Consensus 44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 5899999999999999999953 121 35899999999999999999999999999999999999999999999
Q ss_pred HHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc----------cccccccc
Q 009867 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS----------ELTLSLAH 145 (523)
Q Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 145 (523)
+++|++++|+++.++.+++.+++++++++++|++.+....+.......+....++....... .....+.+
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK 203 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence 99999999999999999999999999999999987765555443333221111111111000 00000110
Q ss_pred ccc--cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHH
Q 009867 146 SES--DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLS 223 (523)
Q Consensus 146 ~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 223 (523)
... ...........++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|.+++.. ++.
T Consensus 204 ~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~ 282 (651)
T PLN02736 204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVN-QIV 282 (651)
T ss_pred HHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHH-HHH
Confidence 000 00011122346799999999999999999999999999998888888888999999999999999999875 778
Q ss_pred hhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccC----------------------------CCC
Q 009867 224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----------------------------KPE 275 (523)
Q Consensus 224 ~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----------------------------~~~ 275 (523)
++..|+++++.+. ++..+++.++++++|+++++|.++..+.+.... ...
T Consensus 283 ~l~~G~~i~~~~~---~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (651)
T PLN02736 283 MLHYGVAVGFYQG---DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPS 359 (651)
T ss_pred HHHcCCEEEEeCC---CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999988763 678899999999999999999999887653110 000
Q ss_pred C------------CC-CCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CC
Q 009867 276 P------------VY-PKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VG 341 (523)
Q Consensus 276 ~------------~~-~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~ 341 (523)
. .+ +++|.+++||+++++++.+++.+.+|+++++.||+||+++.++.... .....+++|+| ++
T Consensus 360 ~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~pg 436 (651)
T PLN02736 360 PMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDE---GDNLSGHVGSPNPA 436 (651)
T ss_pred chHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCC---CCCCCCccCCccCc
Confidence 0 01 47999999999999999999999999999999999999876654432 22456789999 79
Q ss_pred cEEEEEC-CCCC---ccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceec-
Q 009867 342 QEIAILD-EIGV---PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINR- 415 (523)
Q Consensus 342 ~~~~i~d-~~~~---~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~- 415 (523)
++++++| +++. ....++.|||+++||+++.||+++++.+++.| .+|||+|||+|++|+||.+++.||.+|+||.
T Consensus 437 ~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~ 516 (651)
T PLN02736 437 CEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 516 (651)
T ss_pred eEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcC
Confidence 9999998 3322 22334579999999999999999999999988 5899999999999999999999999999995
Q ss_pred CCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC--------CCCCHHHHHHHHH-------------
Q 009867 416 GGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG--------SNIDEEEVLRFCK------------- 474 (523)
Q Consensus 416 ~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~~~~~------------- 474 (523)
+|++|+|.+||++|.++|.|.+++|++. ..++.++++|++..+ ...+..++.++++
T Consensus 517 ~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 593 (651)
T PLN02736 517 QGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMD 593 (651)
T ss_pred CCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHH
Confidence 7999999999999999999999999983 245678888887542 1122122222221
Q ss_pred -----hcCcCCCCCcEEEEeCCcC------CCCCccccHHHHHHHHHHhhhhhcC
Q 009867 475 -----KNVAAFKVPKRVFITNELP------KTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 475 -----~~l~~~~~p~~i~~~~~lp------~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
..|+.+++|+.+.+++++| +|++||++|+.+++.|.++++.-|.
T Consensus 594 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~ 648 (651)
T PLN02736 594 AVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYA 648 (651)
T ss_pred HHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHHh
Confidence 2599999999999999876 7999999999999999999987664
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=556.67 Aligned_cols=492 Identities=26% Similarity=0.398 Sum_probs=413.4
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+++.++|.++++++|+++|+.+.+ ..+||+||.++++++|.+|.++|+++||+|+++++|+.+++++++||+++|++++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDEL-GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeCC-CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 689999999999999999999876 5999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++.++++++|++......+...............+.+....... ......... ......+++.
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 198 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTV--EVLIAAHAG-QRPEPTGRKG 198 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccH--HHHhhccCc-CCCCCCCCCC
Confidence 9999999999999999999999999877655443322211111111111111000000 000000000 0111246788
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|.++..........+.+..+++++...|++|.+|+.. ++.++..|+++++.. .+++..
T Consensus 199 ~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~--~~~~~~ 275 (537)
T PRK13382 199 RVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRR--RFDPEA 275 (537)
T ss_pred eEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECC--CcCHHH
Confidence 99999999999999999999998888877777788889999999999999998854 788888999998865 678999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.++++++|++.++|++++.+++.... ....+++++|.++++|+++++++.+.+.+.++..+++.||+||++.++..
T Consensus 276 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 355 (537)
T PRK13382 276 TLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATA 355 (537)
T ss_pred HHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceec
Confidence 99999999999999999999999875432 11223568999999999999999999999999999999999999876654
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCC
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG 401 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g 401 (523)
+.. ......+++|+| +++.++++|+++++++.|+.|||+++|++++.||+ ++.+. .+.+|||+|||+++++++|
T Consensus 356 ~~~--~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g 430 (537)
T PRK13382 356 TPA--DLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENG 430 (537)
T ss_pred Chh--HhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCC
Confidence 431 122345789999 79999999999999999999999999999999998 33333 3568999999999999999
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCC
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 481 (523)
.+++.||++|+||.+|++++|.+||+.|.++++|.+++|++.++...++.+.+++++.++...+.++++++++++|+.++
T Consensus 431 ~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~ 510 (537)
T PRK13382 431 RLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYK 510 (537)
T ss_pred cEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999998888888999999877766778899999999999999
Q ss_pred CCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 482 VPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 482 ~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+|..+++++++|+|++||++|++|++
T Consensus 511 ~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 511 VPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred CCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 99999999999999999999998864
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=558.13 Aligned_cols=504 Identities=28% Similarity=0.456 Sum_probs=419.0
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.|+.+.|.+.++++|+++|++..+ +.+||+||+++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~-~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~ 102 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLG-KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV 102 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 589999999999999999999876 699999999999999999998 599999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecC-Cc---cc-------------------
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA-DS---EL------------------- 139 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~------------------- 139 (523)
+|++|..+.+++.++++.++++++|++......+........+.......... .. ..
T Consensus 103 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (562)
T PRK05677 103 VNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLP 182 (562)
T ss_pred eecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCCc
Confidence 99999999999999999999999999876555443333222222111100000 00 00
Q ss_pred -ccccccc--cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc--cCC-CceEEEEcChhh
Q 009867 140 -TLSLAHS--ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTE-SDSTVIVLPLFH 213 (523)
Q Consensus 140 -~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~-~~~~~~~~p~~~ 213 (523)
...+.+. .............++++++++|||||||.||+|.++|+++..........+. +.. .+++++.+|++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h 262 (562)
T PRK05677 183 QAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYH 262 (562)
T ss_pred ccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHH
Confidence 0000000 0000011112345789999999999999999999999999877665554443 332 467889999999
Q ss_pred HHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCH
Q 009867 214 VHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAP 293 (523)
Q Consensus 214 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~ 293 (523)
..++...++.++..|++.++.+. ..++..+++.++++++|+++++|+++..+........ ..++++|.+++||+.+++
T Consensus 263 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~v~~gG~~~~~ 340 (562)
T PRK05677 263 IYAFTFHCMAMMLIGNHNILISN-PRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRK-LDFSALKLTLSGGMALQL 340 (562)
T ss_pred HHHHHHHHHHHHHcCCeEEEecC-cccHHHHHHHHHHcCceEEecHHHHHHHHHhCccccc-CChhhceEEEEcCccCCH
Confidence 99988778888888887666543 4578899999999999999999999999887543322 345789999999999999
Q ss_pred HHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccc
Q 009867 294 VILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372 (523)
Q Consensus 294 ~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~g 372 (523)
++.+.+.+.+++++++.||+||++.++..... .....+++|+| ++.+++++|+++.+++.|+.|||+++|++++.|
T Consensus 341 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~---~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~g 417 (562)
T PRK05677 341 ATAERWKEVTGCAICEGYGMTETSPVVSVNPS---QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKG 417 (562)
T ss_pred HHHHHHHHHcCCCeeccCCccccCcceeecCc---cCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchh
Confidence 99999999999999999999999876655432 22345679999 789999999999999999999999999999999
Q ss_pred cCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 373 YKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 373 y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
|+++++.+.+.| .+|||+|||+++++++|.+++.||.+|+++.+|.+++|.+||++|.++++|.+++|++++++..++.
T Consensus 418 Y~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~ 497 (562)
T PRK05677 418 YWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEA 497 (562)
T ss_pred hcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCce
Confidence 999999998888 4899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 452 INCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 452 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+.++++..++...+.++++++++++|+++++|..+++++++|+|++||++|+.|+++++.+.
T Consensus 498 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~ 559 (562)
T PRK05677 498 IKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559 (562)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhc
Confidence 88888887766678899999999999999999999999999999999999999998776554
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=549.90 Aligned_cols=491 Identities=28% Similarity=0.443 Sum_probs=424.0
Q ss_pred CHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
.+.+.|+++|+.+|+++|+.+.+ +.+||+||+++++++|+.|++ .|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~-~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEE-EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECC-ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 57899999999999999999876 799999999999999999986 6999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++.++++.+++++................... .+.+. ..... ..........++++
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~-~~~~~~~~~~~~~~ 151 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVI-SITSL--------KEIED-RKIDNFVEKNESAS 151 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEE-Eecch--------Hhhhc-cCCCCCCCCCCCCc
Confidence 9999999999999999999999999877655544333222111111 01100 00000 00011123456889
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|.++..........+++.++++++..+|++|.+|+....+.++..|+++++++ .+++..
T Consensus 152 ~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~ 229 (496)
T PRK06839 152 FIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR--KFEPTK 229 (496)
T ss_pred EEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc--CCCHHH
Confidence 999999999999999999999988776666677788899999999999999998877788999999999876 678999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccC
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~ 323 (523)
+++.++++++|++.++|++++.+++...... ..+++++.+++||+.++++..+.+.+. |+++++.||+||++..+...
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~ 307 (496)
T PRK06839 230 ALSMIEKHKVTVVMGVPTIHQALINCSKFET-TNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFML 307 (496)
T ss_pred HHHHHHhhCCeEEEehHHHHHHHHhCccccc-CCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEec
Confidence 9999999999999999999999988754333 457899999999999999999999876 99999999999998755443
Q ss_pred CCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCc
Q 009867 324 PLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY 402 (523)
Q Consensus 324 ~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 402 (523)
.. .......+++|+| ++.+++++|+++..++.|+.|||+++|++++.||+++++.+...+.+|||+|||+++++++|.
T Consensus 308 ~~-~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~ 386 (496)
T PRK06839 308 SE-EDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGF 386 (496)
T ss_pred cc-ccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCc
Confidence 21 2223456789999 789999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCC
Q 009867 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKV 482 (523)
Q Consensus 403 ~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 482 (523)
+++.||.+|+++.+|.+++|.+||+++.++++|.+++|++.+++..++.+.++++.+++...+.+++++++++.|+.+++
T Consensus 387 ~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 466 (496)
T PRK06839 387 VYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKI 466 (496)
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCC
Confidence 99999999999999999999999999999999999999999998888889999998887777889999999999999999
Q ss_pred CcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 483 PKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 483 p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
|..+++++++|+|.+||++|++|+++..+
T Consensus 467 P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 467 PKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred CcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 99999999999999999999999987653
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-69 Score=551.81 Aligned_cols=503 Identities=33% Similarity=0.523 Sum_probs=431.5
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|+..|+.+.|...++.+|+++|+.+.+ +++||+||++++.++|..|.+.|+++||+|+++++|+.+++++++||+++|+
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~ 80 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFGD-QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGA 80 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeCC-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCe
Confidence 355789999999999999999999877 6999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccc----ccccccc-cccccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT----LSLAHSE-SDTNAISK 155 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~ 155 (523)
+++|+++..+.+.+.++++.++++++++++.............................. ..+.... ........
T Consensus 81 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (513)
T PRK07656 81 VVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERA 160 (513)
T ss_pred EEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCc
Confidence 999999999999999999999999999998766555443322221111111111100000 0000000 00001122
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.....+++++++|||||||.||+|.++|.++...+......+++.+++++++..|++|.+++...++.++..|+++++..
T Consensus 161 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 240 (513)
T PRK07656 161 PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLP 240 (513)
T ss_pred CCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecC
Confidence 33567899999999999999999999999999888888888899999999999999999999888999999999998865
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC-ceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~t 314 (523)
..++..+++.++++++|++.++|+++..+.+...... ..++++|.++++|+.+++++.+.+.+.++. .+++.||+|
T Consensus 241 --~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~t 317 (513)
T PRK07656 241 --VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA-EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLS 317 (513)
T ss_pred --cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC-CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccc
Confidence 5689999999999999999999999999988765443 356899999999999999999999999988 899999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeC
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTG 392 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG 392 (523)
|+++++..+...........++|.| ++.+++++|+++.+++.|+.|||+++|+.++.||++++..+...+. +|||+||
T Consensus 318 E~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG 397 (513)
T PRK07656 318 EASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG 397 (513)
T ss_pred cCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc
Confidence 9988877665432222235788998 7899999999999999999999999999999999999988888875 8999999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+++++++|.+++.||.+|+++.+|.++++.+||++|.++++|.+++|++.++...++.+.++++..++...+.++++++
T Consensus 398 Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~ 477 (513)
T PRK07656 398 DLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAY 477 (513)
T ss_pred ceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877888888888876666788999999
Q ss_pred HHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 473 ~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+++.|+++++|..+++++++|+|++||++|+.|++
T Consensus 478 ~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 478 CREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred HHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 99999999999999999999999999999999875
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-70 Score=559.28 Aligned_cols=500 Identities=29% Similarity=0.466 Sum_probs=411.5
Q ss_pred CHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
++.+.+... +.+|+++|+++..+ .++||+||.++++++|++|++ .|+++||+|+++++|+.++++++|||+++|+++
T Consensus 41 ~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~ 119 (560)
T PLN02574 41 DAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119 (560)
T ss_pred CHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEE
Confidence 444444443 67999999997543 479999999999999999999 899999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-e--cCCcccccccccc-cccccccccCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-L--DADSELTLSLAHS-ESDTNAISKLTN 158 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (523)
+|++|.++.+++.++++.+++++++++.+....+.. .......+.. . +........+... ............
T Consensus 120 v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
T PLN02574 120 TTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP----LGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVI 195 (560)
T ss_pred eCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHh----cCCcEEecCcccccccCccCcccHHHHhhcCCcccccCCC
Confidence 999999999999999999999999998765443322 1111100000 0 0000000000000 000111112234
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH----hc-cCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV----YK-LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.++++++++|||||||.||+|.++|+++...+..+... +. ....++++..+|++|.+|+...++.++..|+++++
T Consensus 196 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~ 275 (560)
T PLN02574 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVV 275 (560)
T ss_pred CcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEE
Confidence 57899999999999999999999999998877655431 22 23567888999999999998878888889999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG 312 (523)
.+ .+++..+++.++++++|++.++|+++..+.+........++++++.++++|+.++++..+++.+.+ ++.+++.||
T Consensus 276 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG 353 (560)
T PLN02574 276 MR--RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYG 353 (560)
T ss_pred ec--CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEeccc
Confidence 76 678999999999999999999999999998775432234578999999999999999999999888 789999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCee
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWF 389 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~ 389 (523)
+||++.+++... ........+++|+| ++++++|+| ++|.+++.|+.|||||+|++++.||+++++.+...| .+|||
T Consensus 354 ~tE~~~~~~~~~-~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 432 (560)
T PLN02574 354 MTESTAVGTRGF-NTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL 432 (560)
T ss_pred ccccCceeecCC-CccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence 999986554322 12222455788998 799999999 789999999999999999999999999999988877 58999
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEV 469 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 469 (523)
+|||+++++++|.+++.||.+|+||.+|+++++.+||++|.++++|.+++|++.+++..++.++++++..++...+.+++
T Consensus 433 ~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l 512 (560)
T PLN02574 433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAV 512 (560)
T ss_pred ccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887888888888877766778999
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++++++|+++++|..+++++++|+|++||++|+.|++++.+.
T Consensus 513 ~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 513 INYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred HHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988654
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=552.69 Aligned_cols=504 Identities=32% Similarity=0.480 Sum_probs=424.2
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
+..|+.+++.++++++|+++|+++.+ ++++||.||+++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~ 100 (537)
T PLN02246 21 NHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100 (537)
T ss_pred CCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCE
Confidence 35689999999999999999998653 36899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCC
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTND 159 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (523)
+++|++|.++.+++.++++.+++++++++......+........+. .... +........+... .......+.....
T Consensus 101 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~--~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T PLN02246 101 VTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVT--VVTI-DDPPEGCLHFSELTQADENELPEVEIS 177 (537)
T ss_pred EEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCce--EEEe-CCCCCCceeHHHHhcCCCCCCCCCCCC
Confidence 9999999999999999999999999999887665554443221111 1111 1110000000000 0011111222345
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
++++++++|||||||.||+|.++|+++......... .+.+.++|+++..+|++|.+++...++.++..|+++++.+
T Consensus 178 ~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~ 257 (537)
T PLN02246 178 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMP 257 (537)
T ss_pred ccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 789999999999999999999999999877665433 4578899999999999999998777889999999999987
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~t 314 (523)
..++..+++.++++++|++.++|+++..|++...... ..++++|.++++|+.+++++.+.+.+.+ ++.+++.||+|
T Consensus 258 --~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~t 334 (537)
T PLN02246 258 --KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEK-YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMT 334 (537)
T ss_pred --CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccc-cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccccc
Confidence 5688999999999999999999999999987654332 3468899999999999999999999998 77899999999
Q ss_pred ccccccccCCCC--CCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCee
Q 009867 315 EATHLMSSNPLP--EDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWF 389 (523)
Q Consensus 315 E~~~~~~~~~~~--~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~ 389 (523)
|++.+++.+... .......+++|+| ++.+++++| +++.+++.|+.|||+++|++++.||+++++.+...+ .++||
T Consensus 335 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~ 414 (537)
T PLN02246 335 EAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWL 414 (537)
T ss_pred ccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCe
Confidence 998766543211 1122345678999 789999999 678999999999999999999999999999888887 57899
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEV 469 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 469 (523)
+|||+++++++|.+++.||.+|++|.+|++|+|.+||+.+.++++|.+++|++.++...++.++++++..++...+.+++
T Consensus 415 ~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 494 (537)
T PLN02246 415 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEI 494 (537)
T ss_pred eecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887888888888877766778899
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++++.++.+++|..+++++++|+|++||++|+.|++++.+
T Consensus 495 ~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 495 KQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred HHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-69 Score=549.85 Aligned_cols=495 Identities=31% Similarity=0.467 Sum_probs=420.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++.+|+++|++..+ +.+||+||+++++++|..|.+.|+++|++|+++++|+.++++++|||+++|+++
T Consensus 20 ~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~ 98 (542)
T PRK06155 20 ERTLPAMLARQAERYPDRPLLVFGG-TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence 5689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhc-ccccceeeeecCCccc--ccccc--cccccccccccCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL-NISHATATLLDADSEL--TLSLA--HSESDTNAISKLT 157 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~ 157 (523)
+|+++.++.+++.++++.+++++++++.+....+....... ...... ..+..... ...+. .............
T Consensus 99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (542)
T PRK06155 99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW--LLDAPASVSVPAGWSTAPLPPLDAPAPAAA 176 (542)
T ss_pred EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEE--EecCccccccccccchhhhcccCCCCCCCC
Confidence 99999999999999999999999999887665554432221 111111 11111000 00000 0000000111223
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
..++++++++|||||||.||+|.++|.++..........+++.+++++++.+|++|..++.. ++.++..|+++++.+
T Consensus 177 ~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~-- 253 (542)
T PRK06155 177 VQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEP-- 253 (542)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeC--
Confidence 45789999999999999999999999999888777778888999999999999999998875 789999999999877
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
.+++..+++.++++++|++.++|+++..+.+...... ...++++.++.+| +++.+.+.+.+.++.++++.||+||++
T Consensus 254 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~ 330 (542)
T PRK06155 254 RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES-DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETN 330 (542)
T ss_pred CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc-cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccC
Confidence 5689999999999999999999999999887654433 3456788766554 678999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCC---CcccccCCChhhhhhhccCCeeeeCc
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGP---NVTKGYKNNPEANKSAFLFGWFHTGD 393 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~~~~~TGD 393 (523)
.++..+. .....+++|.+ ++++++++|+++.+++.|+.|||+++|+ +++.||+++++.+...+.++||+|||
T Consensus 331 ~~~~~~~----~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD 406 (542)
T PRK06155 331 FVIAVTH----GSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGD 406 (542)
T ss_pred ccccCCC----CCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccc
Confidence 7766542 12355678888 7899999999999999999999999998 68999999999998888999999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+++++++|.+++.||.+|+++++|.+++|.+||+++.++++|.+++|++++++..++.+.+++++..+...+..++++++
T Consensus 407 ~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 486 (542)
T PRK06155 407 RVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHC 486 (542)
T ss_pred eEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888777888888888877778889999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++++.+++|..+.+++++|+|++||++|++|++++.
T Consensus 487 ~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 487 EPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred HhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 9999999999999999999999999999999988775
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=558.81 Aligned_cols=501 Identities=29% Similarity=0.435 Sum_probs=418.5
Q ss_pred HHHHHHHHHh-hcCCceeEEECC---cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 6 LIGLLNQVID-QFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 6 i~~~l~~~a~-~~p~~~a~~~~~---~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+.++++.+++ .+|+++|+.+.+ .+++||+||+++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v 124 (570)
T PRK04319 45 AYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI 124 (570)
T ss_pred HHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 3467888777 479999998753 268999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc--ccccccccc-cccccccccCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS--ELTLSLAHS-ESDTNAISKLTN 158 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 158 (523)
++|+++.++.+++.++++.++++.+++++......... ........+. ...... .....+... ............
T Consensus 125 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (570)
T PRK04319 125 VGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD-DLPSLKHVLL-VGEDVEEGPGTLDFNALMEQASDEFDIEWT 202 (570)
T ss_pred EcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh-cCCCceEEEE-ECCCcCCCcCccCHHHHHhhcCCcCCcccc
Confidence 99999999999999999999999999987654332211 0011111111 111100 000111100 001111112234
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
.++++++++|||||||.||+|.++|.++..........+++.++|++++..|++|..|....++.++..|+++++... .
T Consensus 203 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~-~ 281 (570)
T PRK04319 203 DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG-R 281 (570)
T ss_pred CCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC-C
Confidence 568999999999999999999999999998887777888899999999999999999888889999999999888653 5
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
+++..+++.++++++|+++++|++++.+.+.... .....++++|.++++|+.+++++.+++.+.++.++++.||+||++
T Consensus 282 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~ 361 (570)
T PRK04319 282 FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETG 361 (570)
T ss_pred CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccC
Confidence 7899999999999999999999999999875432 122346899999999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--CCcccccCCChhhhhhhccCCeeeeCce
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEANKSAFLFGWFHTGDI 394 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~TGD~ 394 (523)
..+..... ......+++|+| ++++++++|+++.+++.|+.|||++++ ++++.||+++++.+.+.+.+|||+|||+
T Consensus 362 ~~~~~~~~--~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl 439 (570)
T PRK04319 362 GIMIANYP--AMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDS 439 (570)
T ss_pred CEEEecCC--CCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcE
Confidence 76554321 122356789999 799999999999999999999999997 8999999999999999999999999999
Q ss_pred eeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHH
Q 009867 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLR 471 (523)
Q Consensus 395 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~ 471 (523)
++++++|.+++.||.+|+|+.+|++|+|.+||+.+.++|+|.+++|++.+++..++.+.++++..++..... +++++
T Consensus 440 ~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~ 519 (570)
T PRK04319 440 AYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRG 519 (570)
T ss_pred EEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888888889888877644332 57899
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+++++|+.|++|..++++++||+|++||++|+.|+++..+
T Consensus 520 ~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 559 (570)
T PRK04319 520 FVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG 559 (570)
T ss_pred HHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence 9999999999999999999999999999999999998754
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=548.50 Aligned_cols=504 Identities=30% Similarity=0.465 Sum_probs=417.7
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..+|+.++|.+.++++|+++|+...+ .++||+||+++++++|..|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 83 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWGD-RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEECC-ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence 45789999999999999999999876 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc--cccccccccCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS--ESDTNAISKLTND 159 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 159 (523)
++++++.++.+++.++++.++++.+++++........................... ...+... .............
T Consensus 84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 161 (528)
T PRK07470 84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARA--GLDYEALVARHLGARVANAAVD 161 (528)
T ss_pred EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcc--cccHHHHHhcCCCCCCCcccCC
Confidence 99999999999999999999999999998765544433322111111111111000 0000000 0000111122345
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH-Hh-ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY-KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
++++++++|||||||.||+|.++|.++...+..... .+ +..+.|+++..+|++|..++.. ++ .+..|++.++.+..
T Consensus 162 ~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~ 239 (528)
T PRK07470 162 HDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSE 239 (528)
T ss_pred CCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEeccc
Confidence 789999999999999999999999998765543222 22 4677899999999999988754 44 46667776666555
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
.+++..+++.++++++|++.++|++++.+.+...... .+++++|.++++|+.+++...+++.+.+|..+++.||+||++
T Consensus 240 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~ 318 (528)
T PRK07470 240 RFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDR-YDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVT 318 (528)
T ss_pred CcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCC-CCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccC
Confidence 6789999999999999999999999999987654332 357899999999999999999999988999999999999998
Q ss_pred cccccCCCC----CC-CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeee
Q 009867 318 HLMSSNPLP----ED-GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT 391 (523)
Q Consensus 318 ~~~~~~~~~----~~-~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 391 (523)
+.+...... .. .....+++|+| +++.++++|+++.+++.|+.|||+++|+.++.||+++++.+...+.+|||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~T 398 (528)
T PRK07470 319 GNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRT 398 (528)
T ss_pred CceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEec
Confidence 765543211 00 12234678888 7899999999999999999999999999999999999999999899999999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+++++++|.+++.||.+|++|++|++++|.+||+.+.++++|.+++|++.+++..++.+.++++..++...+.+++++
T Consensus 399 GDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (528)
T PRK07470 399 GDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLA 478 (528)
T ss_pred ceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888778788888887766678899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++.|+++++|..+++++++|+|++||++|+.|++++.+
T Consensus 479 ~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 479 WLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEE 518 (528)
T ss_pred HHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999988775
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=550.49 Aligned_cols=504 Identities=31% Similarity=0.479 Sum_probs=426.2
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
++..|+.++|.+.++++|+++|+.+.+ +++||+||.+++.++|..|.+. |+++||+|+++++|+.+++++++||+++|
T Consensus 7 ~~~~tl~~~l~~~a~~~~~~~a~~~~~-~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 85 (546)
T PRK08314 7 LPETSLFHNLEVSARRYPDKTAIVFYG-RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRAN 85 (546)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceeecC-ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 356799999999999999999999887 6999999999999999999999 99999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeee-cC---Ccc-----------------
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DA---DSE----------------- 138 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~----------------- 138 (523)
++++|++|..+.+++.++++.+++++++++......+................. +. ...
T Consensus 86 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 86 AVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred cEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 999999999999999999999999999999877665554433322221111000 00 000
Q ss_pred --cccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHH
Q 009867 139 --LTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHG 216 (523)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 216 (523)
....+................++++++++|||||||.||+|.++|.+++..+......+++.++|++++.+|++|..|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 245 (546)
T PRK08314 166 PGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTG 245 (546)
T ss_pred ccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHH
Confidence 000000000000011222346789999999999999999999999999998888888888999999999999999999
Q ss_pred HHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHH
Q 009867 217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 217 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
+...++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+........ ..+++++.+++||+.+++++.
T Consensus 246 ~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~-~~~~~l~~~~~gG~~~~~~~~ 322 (546)
T PRK08314 246 MVHSMNAPIYAGATVVLMP--RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAE-RDLSSLRYIGGGGAAMPEAVA 322 (546)
T ss_pred HHHHHHHHHHcCCeEEecC--CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccc-cCchhhheeeeccccCCHHHH
Confidence 9888999999999999987 5688999999999999999999999998886543322 346789999999999999999
Q ss_pred HHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccC
Q 009867 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYK 374 (523)
Q Consensus 297 ~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~ 374 (523)
+++.+.++.++++.||+||++........ ......++|+| ++.+++++| +++.+++.|+.|||+++|++++.||+
T Consensus 323 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~ 399 (546)
T PRK08314 323 ERLKELTGLDYVEGYGLTETMAQTHSNPP---DRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYW 399 (546)
T ss_pred HHHHHHcCCcEEecccccccccceecCCC---cCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhcccc
Confidence 99999999999999999999876554432 12244678888 789999999 67899999999999999999999999
Q ss_pred CChhhhhhhcc--C--CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 009867 375 NNPEANKSAFL--F--GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE 450 (523)
Q Consensus 375 ~~~~~~~~~~~--~--~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 450 (523)
+++..+...|. + +||+|||+++++.+|.+++.||.+|+++++|.+++|.+||+++.++++|.+++|++.++...++
T Consensus 400 ~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~ 479 (546)
T PRK08314 400 NRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGE 479 (546)
T ss_pred CChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCc
Confidence 99998887763 2 4999999999999999999999999999999999999999999999999999999999888888
Q ss_pred eeEEEEEeCCCC--CCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 451 EINCAIIPREGS--NIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 451 ~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
.+.++++..++. ..+.++++++++++|+++++|..+++++++|+|++||++|+.|++...+
T Consensus 480 ~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 480 TVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred eeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhh
Confidence 888998887653 3456889999999999999999999999999999999999999875544
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=546.40 Aligned_cols=506 Identities=32% Similarity=0.517 Sum_probs=436.4
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|...|+.++|.+.++.+|+++|+.+.+ ..+||+||+++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFDG-RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 467899999999999999999999888 5799999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc----ccccccccc-ccccccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS----ELTLSLAHS-ESDTNAISK 155 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 155 (523)
+++|+++.++.+++.++++.+++++++++.+....+.................+... .....+.+. .........
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDF 161 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCCC
Confidence 999999999999999999999999999998877666555444332111111111110 000011110 000111112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.....+++++++|||||||.||+|.++|.++..........+++.++++++..+|++|..++...+. ++..|+++++++
T Consensus 162 ~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~l~~G~~~v~~~ 240 (521)
T PRK06187 162 PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYL-ALMAGAKQVIPR 240 (521)
T ss_pred CCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHH-HHHhCCEEEecC
Confidence 3445688999999999999999999999999988888888889999999999999999998877444 999999999988
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE 315 (523)
. .++..+++.++++++|.++++|++++.+.+...... ..++++|.++++|+.+++++.+.+.+.|++++++.||+||
T Consensus 241 ~--~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~-~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE 317 (521)
T PRK06187 241 R--FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF-VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTE 317 (521)
T ss_pred C--CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc-cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCc
Confidence 4 489999999999999999999999999988776533 4578999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCC---CCCCCCcccc-CCcEEEEECCCCCccCC--CceeEEEEeCCCcccccCCChhhhhhhccCCee
Q 009867 316 ATHLMSSNPLPEDG---PHKPGSVGRP-VGQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389 (523)
Q Consensus 316 ~~~~~~~~~~~~~~---~~~~~~~g~~-~~~~~~i~d~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (523)
++.++......... .....++|+| ++..++++|+++.+++. |+.|||+++|++++.||+++++.+...+.++||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~ 397 (521)
T PRK06187 318 TSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWL 397 (521)
T ss_pred cCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCce
Confidence 98776665432211 1255778888 78999999999999988 999999999999999999999999999999999
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEV 469 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 469 (523)
+|||+++++++|.+++.||.+++++.+|.+++|.+||+++.++++|.+++|++.+++..++.+.++++..++...+.+++
T Consensus 398 ~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 477 (521)
T PRK06187 398 HTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKEL 477 (521)
T ss_pred eccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877888899999888777788999
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++++.++.+++|..+++++++|+|++||++|..++++|++
T Consensus 478 ~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 478 RAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred HHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=551.07 Aligned_cols=506 Identities=30% Similarity=0.513 Sum_probs=424.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++++++++++|+++|+.+.+ +.+||.||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~~-~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 109 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFFG-ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV 109 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 3589999999999999999999876 689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-ecCCc------------------------
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDADS------------------------ 137 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------ 137 (523)
+|++|.++.+++.+++.+++++++|+++...................... .....
T Consensus 110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (573)
T PRK05605 110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP 189 (573)
T ss_pred eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccC
Confidence 99999999999999999999999999877655443332222211111000 00000
Q ss_pred -cccccccccccc--c---cccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc-c-CCCceEEEEc
Q 009867 138 -ELTLSLAHSESD--T---NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-L-TESDSTVIVL 209 (523)
Q Consensus 138 -~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~-~~~~~~~~~~ 209 (523)
.....+.+.... . ..........+++++++|||||||.||+|.++|.++...+......+. + ..+++++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (573)
T PRK05605 190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAAL 269 (573)
T ss_pred CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEec
Confidence 000000000000 0 001112345789999999999999999999999999877665443332 2 3468999999
Q ss_pred ChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccC
Q 009867 210 PLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSA 289 (523)
Q Consensus 210 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~ 289 (523)
|++|.+|+...++.++..|+++++.+ ..++..+++.++++++|++.++|++++.+.+...... ..++++|.++++|+
T Consensus 270 p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gg~ 346 (573)
T PRK05605 270 PMFHAYGLTLCLTLAVSIGGELVLLP--APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG-VDLSGVRNAFSGAM 346 (573)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeC--CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC-CCchhccEEEECCC
Confidence 99999998887888899999998876 5689999999999999999999999999987654433 34689999999999
Q ss_pred CCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCC--CCccCCCceeEEEEeC
Q 009867 290 SLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI--GVPQEGGAKGEVCIRG 366 (523)
Q Consensus 290 ~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~--~~~~~~g~~Gel~v~~ 366 (523)
.+++++.+.+.+.+++++++.||+||+++++...... .....+++|+| ++..++++|.+ +.+++.|+.|||+++|
T Consensus 347 ~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~ 424 (573)
T PRK05605 347 ALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS--DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRG 424 (573)
T ss_pred cCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcc--cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEec
Confidence 9999999999998999999999999999776655422 22345688998 78999999955 5889999999999999
Q ss_pred CCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCC
Q 009867 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDD 446 (523)
Q Consensus 367 ~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~ 446 (523)
+.++.||++++..+...|.+|||+|||+++++++|.+++.||.+|+++.+|++++|.+||+++.+++.|.++++++.++.
T Consensus 425 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~ 504 (573)
T PRK05605 425 PQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPRE 504 (573)
T ss_pred CchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecc
Confidence 99999999999999998988999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 447 KYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 447 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
..++.+.+++++.++...+.++++++++++|+.+++|..+++++++|+|.+||++|++|++++.+++.
T Consensus 505 ~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~~ 572 (573)
T PRK05605 505 DGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKLG 572 (573)
T ss_pred cCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHhc
Confidence 87888999999887777788999999999999999999999999999999999999999999877653
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=545.18 Aligned_cols=507 Identities=29% Similarity=0.454 Sum_probs=434.0
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|...++++|+++|+.+.+ ..+||+||++++.++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFGD-RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 4579999999999999999999887 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC---cccccccccccc-cccccccCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD---SELTLSLAHSES-DTNAISKLTN 158 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~ 158 (523)
+|+++..+.+++.++++.+++++++++......+.................... ......+..... ..........
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPDVEL 168 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCccCC
Confidence 999999999999999999999999999877665544333222111110000000 000000000000 0011122234
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
..+++++++|||||||.||+|.++|.++..........+++.++++++..+|++|..++...++.++..|+++++.+ .
T Consensus 169 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~--~ 246 (523)
T PRK08316 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD--A 246 (523)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEec--C
Confidence 67899999999999999999999999999888877778889999999999999999998776778889999999976 4
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~ 317 (523)
.++..+++.++++++|++.++|+++..+.+...... ..+++++.+++||+.+++++.+.+++.+ ++++++.||+||++
T Consensus 247 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 325 (523)
T PRK08316 247 PDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT-RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIA 325 (523)
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccccc-CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccC
Confidence 589999999999999999999999999987654432 4568999999999999999999999988 78999999999998
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceee
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~ 396 (523)
.++..... .......+++|+| ++.+++++|+++.+++.|+.|||+++|++++.||++++..+...|.++||+|||+|+
T Consensus 326 ~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~ 404 (523)
T PRK08316 326 PLATVLGP-EEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGV 404 (523)
T ss_pred ccccccCc-cccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEE
Confidence 87666432 2223445788999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc
Q 009867 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN 476 (523)
Q Consensus 397 ~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 476 (523)
++++|.+++.||.+|+++.+|++++|.+||+.+.++++|.+++|++.+++..++.+.++++..++...+.+++.++++++
T Consensus 405 ~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 484 (523)
T PRK08316 405 MDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRAR 484 (523)
T ss_pred EcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888889999998877667788999999999
Q ss_pred CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 477 VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 477 l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++.+++|..+++++++|+|++||++|++|+++|.+.++
T Consensus 485 l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 485 LAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred cccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999988765
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=557.48 Aligned_cols=506 Identities=23% Similarity=0.349 Sum_probs=406.8
Q ss_pred HHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 7 IGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 7 ~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.++|+++++.+|+++|+++. +.+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 135 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAI 135 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 66788888889999999863 1268999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcccccceeeeecCCc-c------ccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLNISHATATLLDADS-E------LTLSLAH 145 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~ 145 (523)
++|+++.++.+++.+++++++++++|+++... +.+.............+....... . ....+..
T Consensus 136 ~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 215 (629)
T PRK10524 136 HSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYAT 215 (629)
T ss_pred EEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHH
Confidence 99999999999999999999999999976421 222222221111111111111100 0 0000000
Q ss_pred ccc--cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHH-HHHHHHhccCCCceEEEEcChhhHHHHHHHHH
Q 009867 146 SES--DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV-SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLL 222 (523)
Q Consensus 146 ~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 222 (523)
... .....+.....++++++++|||||||.||+|.++|.++.... ......+++.++|++++..|++|..+....++
T Consensus 216 ~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 295 (629)
T PRK10524 216 LRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVY 295 (629)
T ss_pred HHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHH
Confidence 000 001111122356899999999999999999999999875444 33455668889999999999999888777789
Q ss_pred HhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHH
Q 009867 223 SSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 223 ~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~ 299 (523)
.++..|+++++..+. ..++..+++.++++++|+++++|++++.+.+.... ....+++++|.++++|+++++++.+++
T Consensus 296 ~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~ 375 (629)
T PRK10524 296 APLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWI 375 (629)
T ss_pred HHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHH
Confidence 999999999886643 34688999999999999999999999998775432 122356899999999999999999999
Q ss_pred HHHhCCceeccccccccccccccCCCC-CCCCCCCCCcccc-CCcEEEEECC-CCCccCCCceeEEEEeCC---Cccccc
Q 009867 300 EEAFGAPVLEAYAMTEATHLMSSNPLP-EDGPHKPGSVGRP-VGQEIAILDE-IGVPQEGGAKGEVCIRGP---NVTKGY 373 (523)
Q Consensus 300 ~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~~~~~g~~-~~~~~~i~d~-~~~~~~~g~~Gel~v~~~---~~~~gy 373 (523)
.+.+++++++.||+||++..+...... .......+++|+| ++.+++++|+ +|++++.|+.|||+++|| .++.||
T Consensus 376 ~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~ 455 (629)
T PRK10524 376 SEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTV 455 (629)
T ss_pred HHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCc
Confidence 999999999999999998543322211 1123345788999 7999999997 999999999999999998 477899
Q ss_pred CCChhhhhhhc----cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCC
Q 009867 374 KNNPEANKSAF----LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449 (523)
Q Consensus 374 ~~~~~~~~~~~----~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~ 449 (523)
+++++.....+ .++||+|||+++++++|.+++.||.||+||++|++++|.+||++|.++|+|.+++|++.+++..+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g 535 (629)
T PRK10524 456 WGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKG 535 (629)
T ss_pred cCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCC
Confidence 99887665543 35799999999999999999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEEeCCCCCCC--------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 450 EEINCAIIPREGSNID--------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 450 ~~~~~~v~~~~~~~~~--------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+.+++++++.++...+ .++++++++++|+.+++|..++++++||+|++||++|+.|++.+.+.
T Consensus 536 ~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 606 (629)
T PRK10524 536 QVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR 606 (629)
T ss_pred eEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 8899999987654322 36789999999999999999999999999999999999999887643
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-69 Score=560.69 Aligned_cols=504 Identities=19% Similarity=0.294 Sum_probs=390.8
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC----C--c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS----G--K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~----~--~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
.|+.++|.+.++++|+++|+... + + ..+||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999742 1 1 24899999999999999999999999999999999999999999999
Q ss_pred HHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhc--ccccceeeeecCCcc---------c-cccc
Q 009867 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL--NISHATATLLDADSE---------L-TLSL 143 (523)
Q Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~-~~~~ 143 (523)
+++|++++|+++.++.+++.++++++++++++++.+....+....... .+...+ .+...... . ...+
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi-~~~~~~~~~~~~~~~~~~~~~~~ 203 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVV-SFGGVSREQKEEAETFGLVIYAW 203 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEE-EeCCCChHHhhhhhhcCcEEEEH
Confidence 999999999999999999999999999999999876443332211110 011111 11110000 0 0001
Q ss_pred cccc--ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh-----ccCCCceEEEEcChhhHHH
Q 009867 144 AHSE--SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----KLTESDSTVIVLPLFHVHG 216 (523)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g 216 (523)
.+.. ............++++++++|||||||.||||+++|+++...+......+ ++.++|++++.+|++|.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 283 (666)
T PLN02614 204 DEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD 283 (666)
T ss_pred HHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHH
Confidence 1000 00000111224578999999999999999999999999988776654443 5678999999999999998
Q ss_pred HHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccC------------------------
Q 009867 217 MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA------------------------ 272 (523)
Q Consensus 217 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~------------------------ 272 (523)
+.. .+..+..|+++++.+ .++..+++.+++++||+++++|++++.+.+....
T Consensus 284 ~~~-~~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 359 (666)
T PLN02614 284 RVI-EECFIQHGAAIGFWR---GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM 359 (666)
T ss_pred HHH-HHHHHHhCCEEEEeC---CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 865 556678899988864 3788999999999999999999999988642110
Q ss_pred ---------CCC-----------CCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccccCCCCCCCCC
Q 009867 273 ---------KPE-----------PVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPH 331 (523)
Q Consensus 273 ---------~~~-----------~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 331 (523)
... ...+++|.+++||+++++++ ..+.+.+ ++++++.||+||+++..+... . ....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~-~~~~ 436 (666)
T PLN02614 360 KKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSL-P-DELD 436 (666)
T ss_pred HcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeec-c-ccCC
Confidence 000 00158999999999999876 4555566 589999999999876544332 1 1123
Q ss_pred CCCCcccc-CCcEEEEEC-CC--CCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEec
Q 009867 332 KPGSVGRP-VGQEIAILD-EI--GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407 (523)
Q Consensus 332 ~~~~~g~~-~~~~~~i~d-~~--~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~G 407 (523)
..+++|+| ++++++++| ++ +.+++.|+.|||+|+||+++.|||++|+.|++.|.+|||+|||+|++|+||++++.|
T Consensus 437 ~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~g 516 (666)
T PLN02614 437 MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIID 516 (666)
T ss_pred cCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEE
Confidence 45789999 799999997 33 468889999999999999999999999999999999999999999999999999999
Q ss_pred cccccee-cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC----------CCC----------H
Q 009867 408 RIKELIN-RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS----------NID----------E 466 (523)
Q Consensus 408 R~~~~i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~----------~ 466 (523)
|++|+|| .+|++|+|.+||++|.++|.|.+++|++.+.... ++++|++.... ..+ .
T Consensus 517 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~---l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (666)
T PLN02614 517 RKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESF---LVAIANPNQQILERWAAENGVSGDYNALCQNEKAK 593 (666)
T ss_pred cchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcce---EEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHH
Confidence 9999999 5799999999999999999999999999764332 66666654210 001 0
Q ss_pred HHHHHHH-----HhcCcCCCCCcEEEEeCC-c-----CCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 467 EEVLRFC-----KKNVAAFKVPKRVFITNE-L-----PKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 467 ~~l~~~~-----~~~l~~~~~p~~i~~~~~-l-----p~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
+.+.+.+ +..|+.++.++.+.++++ + .+|+++|+.|+.+.+.|.++|++-|.
T Consensus 594 ~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~ 656 (666)
T PLN02614 594 EFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK 656 (666)
T ss_pred HHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHH
Confidence 1223333 356999999999988863 2 48999999999999999999997664
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=566.29 Aligned_cols=483 Identities=23% Similarity=0.361 Sum_probs=406.3
Q ss_pred CCCCCHHHHHHHHHhh--cCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 1 MEGVTLIGLLNQVIDQ--FSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~--~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
|...|+.++|..+++. +|+++|+... ..+||+||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 1 ~~~~~~~~~~~~~a~~~~~pd~~a~~~~--~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~a 78 (705)
T PRK06060 1 MRNGNLAGLLAEQASEAGWYDRPAFYAA--DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLAR 78 (705)
T ss_pred CCCcCHHHHHHHHHhhccCCCceEEEec--CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 4556899999999886 7999999864 37999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCC
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTN 158 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
|++++|++|.++.+++.++++.++++++|++......+... . . ..... .. ... ...........
T Consensus 79 G~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~----~---~~~~~--~~--~~~-~~~~~~~~~~~ 142 (705)
T PRK06060 79 GVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS----R----V---AEAAE--LM--SEA-ARVAPGGYEPM 142 (705)
T ss_pred CcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc----c----c---chhhh--hh--hhc-cccCCCCCCCC
Confidence 99999999999999999999999999999986543222110 0 0 00000 00 000 00000011123
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH-HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
.++++++++|||||||.||+|.++|.++...+..+. ..+++.++++++...|++|..++...++.++..|+++++.+.
T Consensus 143 ~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~- 221 (705)
T PRK06060 143 GGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA- 221 (705)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC-
Confidence 468899999999999999999999999988776653 467888999999999999998887778889999999998763
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA 316 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~ 316 (523)
.+++..++..++++++|+++++|+++.++++.... ..++++|.+++||+++++++.+.+.+.| ++++++.||+||+
T Consensus 222 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~ 298 (705)
T PRK06060 222 PVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEV 298 (705)
T ss_pred CCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc---ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeecccc
Confidence 45778888999999999999999999999875432 2367899999999999999999999988 5899999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCcee
Q 009867 317 THLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395 (523)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~ 395 (523)
+..+..+.. .....+++|+| ++++++++|+++.+++.|+.|||+++|++++.||+++++.+.. .++||+|||++
T Consensus 299 ~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~ 373 (705)
T PRK06060 299 GQTFVSNRV---DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRV 373 (705)
T ss_pred CceEEeccC---CCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeE
Confidence 866544321 12345678999 7899999999999999999999999999999999998876432 46899999999
Q ss_pred eEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHH
Q 009867 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLRF 472 (523)
Q Consensus 396 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~ 472 (523)
+++++|.+++.||.+|+||++|++|+|.+||+.|.++++|.+++|++.++...++.+.++++...+...+. ++++++
T Consensus 374 ~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~ 453 (705)
T PRK06060 374 CIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRG 453 (705)
T ss_pred EECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877788888888776544443 478899
Q ss_pred HHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 473 ~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
++++|+.|++|..++++++||+|++||++|++|++.+.
T Consensus 454 l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 454 LLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQSP 491 (705)
T ss_pred HHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhcc
Confidence 99999999999999999999999999999999998764
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=544.21 Aligned_cols=511 Identities=29% Similarity=0.396 Sum_probs=427.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.+|+.+.+..+++++|+++|+.+.+ +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 16 ~~n~~~~~~~~a~~~~~~~a~~~~~-~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 94 (542)
T PRK07786 16 RQNWVNQLARHALMQPDAPALRFLG-NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA 94 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4789999999999999999999877 599999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTNDPS 161 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (523)
+|+++.++.+++.++++.+++++++++..............+.........+........+.+. ..............+
T Consensus 95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (542)
T PRK07786 95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVDIPND 174 (542)
T ss_pred EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCCCCCCCCCC
Confidence 9999999999999999999999999988766554333222111111111111100000111110 000011112234457
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhcc-CCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL-TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
++++++|||||||.||+|.++|.++...+......+++ .++++.++..|++|.+|+. .++.++..|+++++.+...++
T Consensus 175 ~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~~~~ 253 (542)
T PRK07786 175 SPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGLLLGAPTVIYPLGAFD 253 (542)
T ss_pred CeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHHHccCEEEEccCCCcC
Confidence 89999999999999999999999999888777777776 6788999999999998885 488899999999987654678
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHL 319 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~ 319 (523)
+..+++.++++++|+++++|+++..++....... ...+++.+++||+++++++.+.+.+.| +.++++.||+||++.+
T Consensus 254 ~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~ 331 (542)
T PRK07786 254 PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPV 331 (542)
T ss_pred HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccc
Confidence 9999999999999999999999999987654332 123789999999999999999999998 7889999999999876
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
.+... ........+++|+| ++..++++|+++.+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++
T Consensus 332 ~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~ 410 (542)
T PRK07786 332 TCMLL-GEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQD 410 (542)
T ss_pred eEecC-cccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEc
Confidence 55433 22223455678999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC-CCCHHHHHHHHHhcC
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS-NIDEEEVLRFCKKNV 477 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~l 477 (523)
++|.+++.||.+|+++++|.++++.+||+++.++++|.+++|++.+.+..++.+.++++...+. ....+++.+++++.+
T Consensus 411 ~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l 490 (542)
T PRK07786 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRL 490 (542)
T ss_pred CCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999988777777777777776543 356788999999999
Q ss_pred cCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 478 AAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 478 ~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
+.+++|..+++++++|+|++||++|++|++++.+.......
T Consensus 491 ~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~ 531 (542)
T PRK07786 491 ARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERR 531 (542)
T ss_pred cCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhc
Confidence 99999999999999999999999999999999987765443
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-69 Score=551.71 Aligned_cols=500 Identities=22% Similarity=0.318 Sum_probs=398.5
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcc---------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKF---------DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF 72 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~---------~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 72 (523)
...|+.++|.+.++++|+++|+++.++. .+||+||.++++++|++|.+.|+++||+|+++++|+.++++++
T Consensus 4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~ 83 (552)
T PRK09274 4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83 (552)
T ss_pred hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence 4578999999999999999999876532 7999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch--hHHHHHHhhcccccceeeeecCCccccccccccc--c
Q 009867 73 LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNISHATATLLDADSELTLSLAHSE--S 148 (523)
Q Consensus 73 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 148 (523)
+||+++|++++|++|.++.+++.+++++++++++|+++... ..+.... .......+. ...........+.... .
T Consensus 84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG-KPSVRRLVT-VGGRLLWGGTTLATLLRDG 161 (552)
T ss_pred HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC-ccchhheec-cccccccCCccHHHhcccC
Confidence 99999999999999999999999999999999999875211 1111000 000111110 0000000000011000 0
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcC
Q 009867 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAG 228 (523)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g 228 (523)
...........++++++++|||||||.||+|.++|.++...+......+++.++++.+..+|++|..++ ..|
T Consensus 162 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--------~~g 233 (552)
T PRK09274 162 AAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP--------ALG 233 (552)
T ss_pred ccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh--------hhC
Confidence 011111223457899999999999999999999999999988888888899999999999998875443 346
Q ss_pred cEEEeCCC-----CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh
Q 009867 229 AAVTLPAA-----GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF 303 (523)
Q Consensus 229 ~~~~~~~~-----~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~ 303 (523)
.+++++.. ..+++..+++.++++++|+++++|++++.|.+...... .+++++|.+++||+++++++.+++.+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~~~~~~~~~~~~~~ 312 (552)
T PRK09274 234 MTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG-IKLPSLRRVISAGAPVPIAVIERFRAML 312 (552)
T ss_pred CeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-CCCchhhEEEecCCcCCHHHHHHHHHHc
Confidence 67766542 13578999999999999999999999999988654332 3578999999999999999999999999
Q ss_pred --CCceeccccccccccccccCCCC------CCC-CCCCCCcccc-CCcEEEEECC---------CCCccCCCceeEEEE
Q 009867 304 --GAPVLEAYAMTEATHLMSSNPLP------EDG-PHKPGSVGRP-VGQEIAILDE---------IGVPQEGGAKGEVCI 364 (523)
Q Consensus 304 --~~~v~~~yG~tE~~~~~~~~~~~------~~~-~~~~~~~g~~-~~~~~~i~d~---------~~~~~~~g~~Gel~v 364 (523)
|+++++.||+||+++++...... ... .....++|+| ++++++++|. ++.+++.|+.|||++
T Consensus 313 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v 392 (552)
T PRK09274 313 PPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVV 392 (552)
T ss_pred CCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEE
Confidence 47999999999998765543211 000 1112368999 7899999983 467889999999999
Q ss_pred eCCCcccccCCChhhhhhhc---cCC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeE
Q 009867 365 RGPNVTKGYKNNPEANKSAF---LFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAV 439 (523)
Q Consensus 365 ~~~~~~~gy~~~~~~~~~~~---~~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~ 439 (523)
+|++++.||+++++.+...+ .+| ||+|||+|++|++|.+++.||.+|+|+++|++|+|.+||++|.++|+|.+++
T Consensus 393 ~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~ 472 (552)
T PRK09274 393 AGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSA 472 (552)
T ss_pred ecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeE
Confidence 99999999999999888765 356 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCC---CCCcEEEEeCCcCCC--CCccccHHHHHHHHHHhh
Q 009867 440 AFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAF---KVPKRVFITNELPKT--ASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 440 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~---~~p~~i~~~~~lp~t--~~GK~~r~~l~~~~~~~~ 513 (523)
|++.+++. ++.++++|++.++...+.+++.+.+++.+..+ +.|..++++++||+| ++||++|++|++++.+.+
T Consensus 473 v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~ 550 (552)
T PRK09274 473 LVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQL 550 (552)
T ss_pred EEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHhh
Confidence 99998764 56678888887776666666777776665544 567889999999999 799999999999887764
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=544.75 Aligned_cols=511 Identities=30% Similarity=0.460 Sum_probs=426.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
.+.|+.++|.+.++++|+++|+++.+ ++.+||.||.++++++|.+|.+.|+++||+|+++++|+.++++++|||+++|+
T Consensus 16 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~ 95 (558)
T PRK12583 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95 (558)
T ss_pred ccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence 45689999999999999999998754 36899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhc-----------ccccce--eeeecCCcccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKL-----------NISHAT--ATLLDADSELTLS 142 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~ 142 (523)
+++++++.++.+++.++++.++++.+|+++.... .+....... ...... .............
T Consensus 96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (558)
T PRK12583 96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLA 175 (558)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCccccc
Confidence 9999999999999999999999999999765321 111111110 000000 0000000000000
Q ss_pred ccccccc-------ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHH
Q 009867 143 LAHSESD-------TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVH 215 (523)
Q Consensus 143 ~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 215 (523)
+...... ..........++++++++|||||||.||+|.++|.++...+......+++.++|+++...|++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 0000000 000111223568899999999999999999999999998888888888999999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHH
Q 009867 216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295 (523)
Q Consensus 216 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~ 295 (523)
|....++.++..|++++++.. .+++..+++.++++++|++.++|+++..++....... ..++++|.++++|+.+++++
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~~G~~~~~~~ 333 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNE-AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN-FDLSSLRTGIMAGAPCPIEV 333 (558)
T ss_pred hHHHHHHHHHhcCceEEeecC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC-CCchhheEEEecCCCCCHHH
Confidence 998889999999999987653 5688999999999999999999999988876544332 45789999999999999999
Q ss_pred HHHHHHHhC-CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCccccc
Q 009867 296 LSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373 (523)
Q Consensus 296 ~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy 373 (523)
.+++.+.++ ..+++.||+||++.++..+...........++|+| +++.++++|+++.+++.|+.|||+++|+.++.||
T Consensus 334 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy 413 (558)
T PRK12583 334 MRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGY 413 (558)
T ss_pred HHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhh
Confidence 999999886 46999999999998776654322223355788998 7899999998899999999999999999999999
Q ss_pred CCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 009867 374 KNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEI 452 (523)
Q Consensus 374 ~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 452 (523)
++++..+...+ .++||+|||+++++++|.+++.||.+++++.+|.+++|.+||+++.++++|.+++|++.+++..++.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~ 493 (558)
T PRK12583 414 WNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493 (558)
T ss_pred cCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEE
Confidence 99999888877 78999999999999999999999999999999999999999999999999999999999888778888
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 453 NCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 453 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+++++..++...+..++++++++.|+.+++|..+++++++|+|++||++|+.|+++..+.+.
T Consensus 494 ~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~~ 555 (558)
T PRK12583 494 VAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEELA 555 (558)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhcC
Confidence 88888877666778899999999999999999999999999999999999999998776554
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-68 Score=546.41 Aligned_cols=512 Identities=32% Similarity=0.479 Sum_probs=427.7
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
.+.|+.++|.+.++++|+++|+.+.+ ++.+||+||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~ 93 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGA 93 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCe
Confidence 46789999999999999999998753 36899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhc-------------c-cccceeeeecCCccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKL-------------N-ISHATATLLDADSELTL 141 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~ 141 (523)
+++|++|..+.+++.++++.+++++++++..... .+....... . ..... ...........
T Consensus 94 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (559)
T PRK08315 94 ILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVI-FLGDEKHPGML 172 (559)
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEE-eecccCCcccc
Confidence 9999999999999999999999999999875432 111111111 0 00000 00000000000
Q ss_pred cccccc-----cccc--ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhH
Q 009867 142 SLAHSE-----SDTN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHV 214 (523)
Q Consensus 142 ~~~~~~-----~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (523)
.+.... .... .........+++++++|||||||.||+|.++|.++...+......+++.++++++..+|++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 252 (559)
T PRK08315 173 NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHC 252 (559)
T ss_pred cHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHH
Confidence 000000 0000 011123456889999999999999999999999999888888888899999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHH
Q 009867 215 HGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294 (523)
Q Consensus 215 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~ 294 (523)
.++...++.++..|+++++... .+++..+++.++++++|+++++|+++..++....... ..++++|.++++|+.+++.
T Consensus 253 ~g~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~-~~~~~lr~~~~~G~~~~~~ 330 (559)
T PRK08315 253 FGMVLGNLACVTHGATMVYPGE-GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR-FDLSSLRTGIMAGSPCPIE 330 (559)
T ss_pred HHHHHHHHHHHhccceEEEecC-CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC-CCchhhheeEecCCCCCHH
Confidence 9998889999999999986443 5689999999999999999999999988887654332 3578999999999999999
Q ss_pred HHHHHHHHhCCc-eeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCC-CCccCCCceeEEEEeCCCccc
Q 009867 295 ILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI-GVPQEGGAKGEVCIRGPNVTK 371 (523)
Q Consensus 295 ~~~~~~~~~~~~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~ 371 (523)
+.+.+.+.++.. +++.||+||++.+++.+...........++|+| ++..++++|++ +++++.|+.|||+|+|++++.
T Consensus 331 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~ 410 (559)
T PRK08315 331 VMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMK 410 (559)
T ss_pred HHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhh
Confidence 999999988655 999999999987766554333223345788998 79999999966 999999999999999999999
Q ss_pred ccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 009867 372 GYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE 450 (523)
Q Consensus 372 gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 450 (523)
||++++..+...+ .++||+|||+++++++|.+++.||.+++++.+|+++++.+||+++.++++|.+++|++.+++..++
T Consensus 411 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 490 (559)
T PRK08315 411 GYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGE 490 (559)
T ss_pred hhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCe
Confidence 9999999888877 688999999999999999999999999999999999999999999999999999999998887778
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhh
Q 009867 451 EINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516 (523)
Q Consensus 451 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~ 516 (523)
.+.++|+...+...+..+++++++++++.+++|..+++++++|+|++||++|.+|++++.+..+.+
T Consensus 491 ~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~~~~ 556 (559)
T PRK08315 491 EVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEELGLQ 556 (559)
T ss_pred EEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhhchh
Confidence 888888887776677889999999999999999999999999999999999999999988766543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-68 Score=538.60 Aligned_cols=493 Identities=29% Similarity=0.445 Sum_probs=421.2
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+|+.++|.++++++|+++|+...+ +.+||.||.+++.++|.+|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~-~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 80 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRD-QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFL 80 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECC-cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 578999999999999999999877 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+.+.++++.++++.++++++....... . ................... ............++++
T Consensus 81 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (497)
T PRK06145 81 PINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-----E--TPKIVIDAAAQADSRRLAQ--GGLEIPPQAAVAPTDL 151 (497)
T ss_pred ecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-----c--cceEEecCcccchhHHHhc--cCCCCCCCCCCCccce
Confidence 99999999999999999999999998765432210 0 0011011000000000000 0000111123467899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|.++..........+++..+++++...|++|.+++....+.++..|+++++.+ .+++..
T Consensus 152 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~--~~~~~~ 229 (497)
T PRK06145 152 VRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR--EFDPEA 229 (497)
T ss_pred EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC--cCCHHH
Confidence 999999999999999999999998766666667788999999999999999998776778899999998876 578999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.++++++|.+.++|+++..++....... ..++++|.+++||+.+++++.+.+.+.| +.++++.||+||++..++.
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~-~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 308 (497)
T PRK06145 230 VLAAIERHRLTCAWMAPVMLSRVLTVPDRDR-FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTL 308 (497)
T ss_pred HHHHHHHhCCeEEEehHHHHHHHHcCCCccc-cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCccee
Confidence 9999999999999999999999987654332 3467899999999999999999999988 6889999999999876554
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCC
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG 401 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g 401 (523)
.... ......+++|+| +++.++++|+++.+++.|+.|||+++|++++.||+++++.+++.|.++||+|||+++++.+|
T Consensus 309 ~~~~-~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g 387 (497)
T PRK06145 309 MEAG-REIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEG 387 (497)
T ss_pred ccCc-cccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCC
Confidence 3321 122345678999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCC
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 481 (523)
.+++.||.+|++|.+|.+++|.+||+.|.++++|.+++|++.+++..++.+.++++..++...+.++++++++++|++++
T Consensus 388 ~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 467 (497)
T PRK06145 388 FLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFK 467 (497)
T ss_pred cEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999988887888888888877666778999999999999999
Q ss_pred CCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 482 VPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 482 ~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+|..+++++++|+|++||++|+.|++++.
T Consensus 468 ~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 468 VPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred CCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99999999999999999999999998764
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=541.13 Aligned_cols=510 Identities=28% Similarity=0.432 Sum_probs=423.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|++.++++|+++|+.+.+++++||+||+++++++|++|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 101 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS 101 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 36899999999999999999997765799999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcccccceeeeecCCcc-cccccccccccc-ccccc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSE-LTLSLAHSESDT-NAISK 155 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 155 (523)
+|+++.++.+++.++++.++++++++++... +.+...................... ....+....... .....
T Consensus 102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (547)
T PRK06087 102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTA 181 (547)
T ss_pred eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccCC
Confidence 9999999999999999999999999976432 2222222222111111111111000 000000000000 00112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.....+++++++|||||||.||+|.++|.++......+...+++.++++++...|++|.+++...++.++..|+++++..
T Consensus 182 ~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~ 261 (547)
T PRK06087 182 ITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD 261 (547)
T ss_pred CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC
Confidence 23457899999999999999999999999998888887788889999999999999999998888999999999999977
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE 315 (523)
..++..+++.++++++++++++|.++..++....... ..++++|.+++||+++++++.+.+.+. |+++++.||+||
T Consensus 262 --~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE 337 (547)
T PRK06087 262 --IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP-ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTE 337 (547)
T ss_pred --CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC-CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccc
Confidence 6789999999999999999998888777776544332 356899999999999999999987764 999999999999
Q ss_pred cccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCc
Q 009867 316 ATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGD 393 (523)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD 393 (523)
++++...... ........++|.| +++.++++|+++.+++.|+.|||+++|++++.||+++++.+...+ .+|||+|||
T Consensus 338 ~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD 416 (547)
T PRK06087 338 SSPHAVVNLD-DPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGD 416 (547)
T ss_pred cCCccccCCC-cchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCc
Confidence 9877654431 1112234567888 789999999999999999999999999999999999999888877 578999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-GSNIDEEEVLRF 472 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~ 472 (523)
+++++++|.+++.||.+|+++.+|++++|.+||+++.++++|.++++++.+++..++.+.++++..+ +...+.+++.++
T Consensus 417 l~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~ 496 (547)
T PRK06087 417 LCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAF 496 (547)
T ss_pred eEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888888989988765 445567888888
Q ss_pred HH-hcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhc
Q 009867 473 CK-KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAK 517 (523)
Q Consensus 473 ~~-~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~ 517 (523)
+. +.++.+++|..+.++++||+|.+||++|+.|++++.+.+.++-
T Consensus 497 ~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~~ 542 (547)
T PRK06087 497 FSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQDV 542 (547)
T ss_pred HHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhhh
Confidence 75 6799999999999999999999999999999999998877553
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=536.91 Aligned_cols=499 Identities=31% Similarity=0.505 Sum_probs=426.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.++.+++.+++ .+|+++|+...+++.+||.||.++++++|..|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 569999999999 9999999988666789999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|+++..+.+++..+++.++++++++++.....+............. .............. ..............++
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 157 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVE-TLDADGTGSLLEAA--AAAPDDFETVPRGADD 157 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEE-EecCCCcccHHHhh--hhcCcccCcccCCCCC
Confidence 99999999999999999999999999987766554443332222111 11111000000000 0001111123346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|.++...+......+++.++++++..+|++|..++...++.++..|+++++.+ ..++.
T Consensus 158 ~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~ 235 (504)
T PRK07514 158 LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLP--KFDPD 235 (504)
T ss_pred eEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECC--CCCHH
Confidence 9999999999999999999999999988888888889999999999999999999888889999999999987 56888
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 322 (523)
.+++.+. ++|.+.++|.++..++....... ..++++|.+++||+.+++++.+.+.+.+++++++.||+||++.....
T Consensus 236 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 312 (504)
T PRK07514 236 AVLALMP--RATVMMGVPTFYTRLLQEPRLTR-EAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSN 312 (504)
T ss_pred HHHHHHH--hheeeecHHHHHHHHHcCCCCCc-ccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccC
Confidence 9999884 79999999999999887644332 34689999999999999999999999999999999999998865443
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeCceeeEcC
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDS 399 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~ 399 (523)
.. .......++|.| ++++++++| +++.+++.|+.|||+++|++++.||++++..+...|. ++||+|||++++++
T Consensus 313 ~~---~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~ 389 (504)
T PRK07514 313 PY---DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE 389 (504)
T ss_pred Cc---cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC
Confidence 22 122345678888 799999999 9999999999999999999999999999999888885 78999999999999
Q ss_pred CCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcC
Q 009867 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479 (523)
Q Consensus 400 ~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 479 (523)
+|.+++.||.+|++|.+|++++|.+||+++.++++|.+++|++.+++..++.++++++..++...+.+++++++++++++
T Consensus 390 ~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 469 (504)
T PRK07514 390 RGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLAR 469 (504)
T ss_pred CccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999888777888888888777667889999999999999
Q ss_pred CCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 480 ~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+++|..+++++++|+|++||++|++|++++.+..
T Consensus 470 ~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~~ 503 (504)
T PRK07514 470 FKQPKRVFFVDELPRNTMGKVQKNLLREQYADLF 503 (504)
T ss_pred CCCCcEEEEeccCCCCCCcceeHHHHHHHHHhhc
Confidence 9999999999999999999999999999987653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=534.94 Aligned_cols=480 Identities=34% Similarity=0.509 Sum_probs=412.4
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+|+.++|.++|.++|+++|+.+.+ +.+||+||+++++++|+.|.+.|+++||+|+++++|+.++++++|||+++|++++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 80 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEE-KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAV 80 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEE
Confidence 689999999999999999999887 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++.++++.++++............ .. +.+ .... ............++++
T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~-----~~~--------~~~~-~~~~~~~~~~~~~~~~ 143 (483)
T PRK03640 81 LLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS---VK-----FAE--------LMNG-PKEEAEIQEEFDLDEV 143 (483)
T ss_pred ecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc---cc-----HHH--------Hhhc-ccccCCCCCCCCCCCe
Confidence 99999999999999999999999998765433221110 00 000 0000 0001111123356899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|.++...+......+++.++|+++..+|++|.+++.. ++.++..|+++++.+ ..++..
T Consensus 144 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~ 220 (483)
T PRK03640 144 ATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVE--KFDAEK 220 (483)
T ss_pred EEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecC--CCCHHH
Confidence 99999999999999999999999887777777788999999999999999998765 788899999999987 578999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccC
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~ 323 (523)
+++.++++++|++.++|+++..+....... ....++|.++++|+.+++...+.+++ +++++++.||+||++..+...
T Consensus 221 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~ 297 (483)
T PRK03640 221 INKLLQTGGVTIISVVSTMLQRLLERLGEG--TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTL 297 (483)
T ss_pred HHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCccccccccc
Confidence 999999999999999999999998664432 22468999999999999999998876 499999999999987544433
Q ss_pred CCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCc
Q 009867 324 PLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY 402 (523)
Q Consensus 324 ~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 402 (523)
. ........+++|+| +++++++.|+ +.+++.|+.|||+++|+.++.||++++..+...|.+|||+|||+++++++|.
T Consensus 298 ~-~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~ 375 (483)
T PRK03640 298 S-PEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGF 375 (483)
T ss_pred C-cccccccCCCcccccCCcEEEEecC-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCC
Confidence 2 12233456789999 7899999885 4889999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCC
Q 009867 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKV 482 (523)
Q Consensus 403 ~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 482 (523)
+++.||++|++|.+|.++++.+||+.+.++++|.++++++.+++..+..+.++++.. ...+.+++++++++.|+.+++
T Consensus 376 l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~ 453 (483)
T PRK03640 376 LYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCEEKLAKYKV 453 (483)
T ss_pred EEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999988887777777767743 356788999999999999999
Q ss_pred CcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 483 PKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 483 p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
|..+++++++|+|++||++|+.|++++.+
T Consensus 454 p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 454 PKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 99999999999999999999999999874
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-68 Score=535.62 Aligned_cols=481 Identities=24% Similarity=0.345 Sum_probs=410.2
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
|++.+.|.++|+++|+++|+.+.+ .++||.||.++++++|.+|.+.|. +||+|+++++|+.++++++|||+++|++++
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 78 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEND-RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCV 78 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCC-cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEE
Confidence 578999999999999999999877 699999999999999999999884 899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++.++++.++++......+... .. ......+... .. . .............+++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----~~--~~~~~~~~~~--~~--~---~~~~~~~~~~~~~~~~ 145 (487)
T PRK07638 79 PLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE----EG--RVIEIDEWKR--MI--E---KYLPTYAPIENVQNAP 145 (487)
T ss_pred ecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc----cc--eEEEehhhhh--hh--h---hccccccccccCCCCc
Confidence 999999999999999999999999987654332210 00 0000000000 00 0 0000011112234678
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|.++...+......+++.++|+++...|++|..++. .++.++..|+++++.+ .+++..
T Consensus 146 a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~-~~~~~l~~g~~~~~~~--~~~~~~ 222 (487)
T PRK07638 146 FYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLY-GAISTLYVGQTVHLMR--KFIPNQ 222 (487)
T ss_pred EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHH-HHHHHHccCcEEEEcC--CCCHHH
Confidence 9999999999999999999999998888888888899999999999999987654 4888999999999876 678999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.++++++|++.++|+++..+.+... ...+.+.++++|+.++++..+++.+.+ ++++++.||+||++.++..
T Consensus 223 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 297 (487)
T PRK07638 223 VLDKLETENISVMYTVPTMLESLYKENR-----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL 297 (487)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHhCcC-----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence 9999999999999999999999987622 134566678899999999999999998 7889999999999977655
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCC
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG 401 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g 401 (523)
+. ........++|+| ++..++++|++|.+++.|+.|||+++|++++.||++++..+...+.+|||+|||++++|++|
T Consensus 298 ~~--~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g 375 (487)
T PRK07638 298 VD--EESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEG 375 (487)
T ss_pred cc--cccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCC
Confidence 43 2234456789999 79999999999999999999999999999999999999888877889999999999999999
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCC
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK 481 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 481 (523)
.+++.||.+|+||.+|.+++|.+||+++.++|+|.+++|++.+++..++.+.++++. ..+.+++++++++.++.++
T Consensus 376 ~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~~l~~~~ 451 (487)
T PRK07638 376 FIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQRLSSFK 451 (487)
T ss_pred eEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999988777777777763 3567899999999999999
Q ss_pred CCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 482 VPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 482 ~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+|..+++++++|+|++||++|+.|++++.++.
T Consensus 452 ~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~ 483 (487)
T PRK07638 452 IPKEWHFVDEIPYTNSGKIARMEAKSWIENQE 483 (487)
T ss_pred CCcEEEEecccCCCCcccccHHHHHHHHhccc
Confidence 99999999999999999999999998877643
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=538.61 Aligned_cols=494 Identities=25% Similarity=0.405 Sum_probs=413.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|+++++++|+++|+++.+ +++||+||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 100 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICGN-RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP 100 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeCC-ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence 3589999999999999999999876 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcc-cccceeeeecCC-ccccccccccccccccccc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-ISHATATLLDAD-SELTLSLAHSESDTNAISK 155 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (523)
+++++..+.+++.++++.+++++++++..... .......... ...... ..... ......... ........
T Consensus 101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ 177 (527)
T TIGR02275 101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIV-AGQTRVEAELFLWLE--SPAEPVKF 177 (527)
T ss_pred eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEE-ecCCCCcchhhHHhh--CcCccccC
Confidence 99999999999999999999999999865421 1111111111 111111 10000 000000000 00011112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~ 234 (523)
....++++++++|||||||.||+|.++|.++...+......+.+.++++++..+|++|.+++.. .++.++..|+++++.
T Consensus 178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~ 257 (527)
T TIGR02275 178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA 257 (527)
T ss_pred CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence 2346789999999999999999999999999988888778888999999999999999998765 478889999999887
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ ..++..+++.++++++|++.++|+++..+.+...... ..++++|.+++||+.+++++.+.+.+.+|+++++.||+|
T Consensus 258 ~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~t 334 (527)
T TIGR02275 258 P--DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMA 334 (527)
T ss_pred C--CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccC
Confidence 6 5688999999999999999999999999887654332 457899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeee
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT 391 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~T 391 (523)
|++....... .......+++|+| .+..++++|++|++++.|+.|||+++|++++.||+++++.+...+ .+|||+|
T Consensus 335 E~~~~~~~~~--~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~T 412 (527)
T TIGR02275 335 EGLVNYTRLD--DPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYT 412 (527)
T ss_pred ccCccccCCC--CccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEc
Confidence 9654332211 1112234578888 368899999999999999999999999999999999999988877 6799999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+++++++|.+++.||.+|+++.+|++++|.+||++|.++|+|.+++|++.++...++.+.++++..++ ..+.+++++
T Consensus 413 GDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~~l~~ 491 (527)
T TIGR02275 413 GDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAAQLRR 491 (527)
T ss_pred CceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888888887665 367889999
Q ss_pred HHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 472 FCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 472 ~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
+++++ ++.+++|..+++++++|+|++||++|+.|+
T Consensus 492 ~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 492 FLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred HHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 99985 999999999999999999999999999763
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=536.68 Aligned_cols=503 Identities=29% Similarity=0.435 Sum_probs=425.1
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+..|+.++|.++++++|+++|+++.+ ..+||.||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLGD-TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEECC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 45699999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEeccc-chhHHHHHHhhcc-cccceeeeecCCcccccccccccccccccccCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLN-ISHATATLLDADSELTLSLAHSESDTNAISKLTND 159 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
++|++|..+.+++.++++.++++.+++++. ............. +... ............ .................
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 166 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHV-LTLGPVPDGVDL-LAAAAKFGPAPLVAAAL 166 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEE-EEeCCccchhhH-HHhhhccCcccccccCC
Confidence 999999999999999999999999999876 2222222221111 1111 111111000000 00000000001111223
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 239 (523)
++++++++|||||||.||+|.++|.++..........+++..++++++.+|++|..++. ++.++..|+++++.+ ..
T Consensus 167 ~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~--~~ 242 (524)
T PRK06188 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLA--KF 242 (524)
T ss_pred CCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcC--CC
Confidence 46699999999999999999999999999888888888999999999999999988864 577889999999987 56
Q ss_pred ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 240 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
++..+++.++++++|+++++|+++..+++...... ..++++|.+++||+.++++....+.+.++..+++.||+||++..
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 321 (524)
T PRK06188 243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT-RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMV 321 (524)
T ss_pred CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccC-CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCc
Confidence 89999999999999999999999999988765443 35789999999999999999999888899999999999999766
Q ss_pred cccCCCCCC---CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCcee
Q 009867 320 MSSNPLPED---GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIG 395 (523)
Q Consensus 320 ~~~~~~~~~---~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~ 395 (523)
++....... ......++|+| +++.++++|+++.+++.|+.|||+++|+.++.||++++..+...+.+|||+|||++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 401 (524)
T PRK06188 322 ITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVA 401 (524)
T ss_pred eeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceE
Confidence 555432111 12344678998 79999999999999999999999999999999999999999988999999999999
Q ss_pred eEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 009867 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK 475 (523)
Q Consensus 396 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 475 (523)
+++++|.+++.||.+++++.+|++++|.+||++|.++++|.+++|++.+++..++.+.+++++.+....+.+++++++++
T Consensus 402 ~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 481 (524)
T PRK06188 402 REDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKE 481 (524)
T ss_pred EEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888889998887766778899999999
Q ss_pred cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 476 NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 476 ~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
.++.+++|..+++++++|+|++||++|++|+++|.+.
T Consensus 482 ~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~ 518 (524)
T PRK06188 482 RKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEG 518 (524)
T ss_pred hcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhh
Confidence 9999999999999999999999999999999998554
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=540.09 Aligned_cols=505 Identities=23% Similarity=0.360 Sum_probs=399.6
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|...++.+|+++|+...+ .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 13 ~~~~~~~l~~~~~~~p~~~Al~~~~-~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~ 91 (579)
T PLN03102 13 PLTPITFLKRASECYPNRTSIIYGK-TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVL 91 (579)
T ss_pred cccHHHHHHHHHHhCCCCeEEEECC-cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence 4689999999999999999999877 599999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhccc-----ccceeeeecCCc---cc--cccccccc--c-c
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNI-----SHATATLLDADS---EL--TLSLAHSE--S-D 149 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~--~~~~~~~~--~-~ 149 (523)
+|++|.++.+++.++++.++++++|++++............+. ....+.+..... .. ...+.... . .
T Consensus 92 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (579)
T PLN03102 92 NPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEP 171 (579)
T ss_pred eeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCC
Confidence 9999999999999999999999999988766555544332210 001111111000 00 00000000 0 0
Q ss_pred ccc---cccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhh
Q 009867 150 TNA---ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFA 226 (523)
Q Consensus 150 ~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 226 (523)
... ........+++++++|||||||.||+|.++|.++............+...++++..+|++|..++.. .+.++.
T Consensus 172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~ 250 (579)
T PLN03102 172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTF-TWGTAA 250 (579)
T ss_pred CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhH-HHHHHH
Confidence 000 0011235689999999999999999999999997554433334445667788899999999988765 566777
Q ss_pred cCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCc
Q 009867 227 AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP 306 (523)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~ 306 (523)
.|+++++.. .+++..+++.++++++|++.++|+++..|.+...... ...++++.+++||+.+++.+.+.+.+ +|++
T Consensus 251 ~g~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~ 326 (579)
T PLN03102 251 RGGTSVCMR--HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQ 326 (579)
T ss_pred hcCcEEeec--cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-CCcccceEEEECCCCCCHHHHHHHHH-cCCe
Confidence 888877766 4578899999999999999999999999987643222 23457788999999999999998865 6999
Q ss_pred eeccccccccccccccCCCCCCC--------CCCCCCcccc--CCcEEEEEC-CCCCccCC--CceeEEEEeCCCccccc
Q 009867 307 VLEAYAMTEATHLMSSNPLPEDG--------PHKPGSVGRP--VGQEIAILD-EIGVPQEG--GAKGEVCIRGPNVTKGY 373 (523)
Q Consensus 307 v~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~g~~--~~~~~~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gy 373 (523)
+++.||+||+++.+..+.....+ .......|.+ +...++++| +.+.+++. ++.|||+++|++++.||
T Consensus 327 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY 406 (579)
T PLN03102 327 VMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGY 406 (579)
T ss_pred EEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhh
Confidence 99999999998654432211100 0001112222 123466666 45566654 46899999999999999
Q ss_pred CCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeE
Q 009867 374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN 453 (523)
Q Consensus 374 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~ 453 (523)
+++++.+.+.|.+|||+|||+|++|++|.+++.||.+|+++.+|++|+|.+||+++.++|.|.+++|++.+++..++.+.
T Consensus 407 ~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 486 (579)
T PLN03102 407 LKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPC 486 (579)
T ss_pred cCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 454 CAIIPREGSNI----------DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 454 ~~v~~~~~~~~----------~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+++++.++... +..+++++++++|+.|++|..+++++++|+|++||++|++|+++..+..
T Consensus 487 a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 487 AFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred EEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhh
Confidence 99888765432 3567999999999999999999999999999999999999999987643
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=540.23 Aligned_cols=501 Identities=28% Similarity=0.437 Sum_probs=414.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.++|.+.++++|+++|+.+. ++..+||.||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 368999999999999999999874 2368999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc---cc-cccccccCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS---ES-DTNAISKLT 157 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 157 (523)
++|+++..+.+++.++++.++++++++++.....+... ... .+.+..........+.+. .. .........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~----~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL----GLP--VIVLGEEKIEGAVNWKELLEAADRAGDTSDNEE 180 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc----CCc--EEEecCCCCCCcccHHHHHhhccccCccccccc
Confidence 99999999999999999999999999998766554322 111 111111000000000000 00 000111223
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc--cCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
...+++++++|||||||.||+|.++|.++...+......+. ....++.+..+|++|.+++...++.++..|+++++.+
T Consensus 181 ~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 260 (546)
T PLN02330 181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMS 260 (546)
T ss_pred CCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEec
Confidence 45689999999999999999999999998876543221111 1234678889999999998877889999999999876
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCC--CcceEEeccCCCCHHHHHHHHHHh-CCceecccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP--KLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYA 312 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~--~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG 312 (523)
.+++..+++.++++++|++.++|+++..+........ ..+. .++.++++|+++++++.+++.+.| ++++++.||
T Consensus 261 --~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG 337 (546)
T PLN02330 261 --RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEE-FDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYG 337 (546)
T ss_pred --ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccc-cccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccc
Confidence 6789999999999999999999999999987643322 1222 578999999999999999999998 899999999
Q ss_pred ccccccccccCCCCC--CCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCC
Q 009867 313 MTEATHLMSSNPLPE--DGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFG 387 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~--~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~ 387 (523)
+||++.+........ .......++|+| ++++++++| +++.+++.|+.|||+++|++++.||++++..+.+.+ .+|
T Consensus 338 ~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g 417 (546)
T PLN02330 338 LTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDG 417 (546)
T ss_pred ccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCC
Confidence 999986554332111 112344678999 799999999 678999999999999999999999999999888777 579
Q ss_pred eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 009867 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE 467 (523)
Q Consensus 388 ~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 467 (523)
||+|||+++++++|.+++.||.+|+++.+|++++|.+||+++.++++|.+++|++++++..++.+.++++..++...+.+
T Consensus 418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 497 (546)
T PLN02330 418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEE 497 (546)
T ss_pred ceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888776667788
Q ss_pred HHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 468 ~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++++++.+|+.+++|..+++++++|+|++||++|++|++++...
T Consensus 498 ~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 498 DILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred HHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999765
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=537.12 Aligned_cols=498 Identities=27% Similarity=0.453 Sum_probs=415.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
..|+.+.+.+.++.+|+++|++.. ....+||+||+++++++|.+|.+.|+++||+|+++++|+++++++++||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 358999999999999999999852 125899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcccccceeeeecCCcccccc-c-ccc-ccc
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDADSELTLS-L-AHS-ESD 149 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~ 149 (523)
+|++++|++|.++.+++.++++.++++++++++.... ................ ..+......+. . ... ...
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 179 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVV-VIDGDGDDSFDRVLMTPERDD 179 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEE-EecCCCCcCHHHHhhcccccc
Confidence 9999999999999999999999999999999876431 1111111111100111 11111000000 0 000 000
Q ss_pred ccc----cccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 150 TNA----ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 150 ~~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
... .......++++++++|||||||.||+|.++|+++...+......+++..++++++.+|++|..++...++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l 259 (538)
T TIGR03208 180 TPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPL 259 (538)
T ss_pred ccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHH
Confidence 000 1112346789999999999999999999999999998888888888899999999999999999888899999
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..|+++++.. .+++..+++.+++++++++.++|.++..+........ ..++++|.++++|+.+++++.+++.+.+++
T Consensus 260 ~~g~~~~~~~--~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~ 336 (538)
T TIGR03208 260 ILNATAVLQD--IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG-APVPSLFTFLCAGAPIPGILVERAWELLGA 336 (538)
T ss_pred HcCCEEEecC--ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC-CCCCcceEEEEcCCCCCHHHHHHHHHHcCC
Confidence 9999999876 6789999999999999999999999999877653322 346899999999999999999999998999
Q ss_pred ceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc
Q 009867 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 306 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 384 (523)
++++.||+||++.+....... .......++|+| +++.++++|+++.+++.|+.|||+++|++++.||+++++.+.. .
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~ 414 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDD-ALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST-D 414 (538)
T ss_pred eEEeeeccCcCCCccccCccc-chhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccc-c
Confidence 999999999998776554321 112223567888 7899999999999999999999999999999999999887653 3
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||+++++++|.+++.||.+|+++.+|++++|.+||++|.++++|.+++|++.++...++.+.+++++..+...
T Consensus 415 ~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~ 494 (538)
T TIGR03208 415 AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL 494 (538)
T ss_pred CCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999888878888999998877667
Q ss_pred CHHHHHHHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 465 DEEEVLRFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 465 ~~~~l~~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
+.+++.+++++ .++.+++|..+++++++|+|++||++|++|+
T Consensus 495 ~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 495 DFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred CHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 88899999985 7999999999999999999999999999885
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=540.56 Aligned_cols=500 Identities=21% Similarity=0.296 Sum_probs=397.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.+.|.+.|+++|+++|+++.++ ..+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v 92 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAI 92 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence 45899999999999999999986543 57999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS 161 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
++|+++.++.+++.++++.++++++++++........+........ .. ..+....... .................++
T Consensus 93 ~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (540)
T PRK05857 93 AVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VI-AVDIAAVTRE-SEHSLDAASLAGNADQGSE 169 (540)
T ss_pred EEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-ee-Eeeccccccc-ccccccccccccccCCCCC
Confidence 9999999999999999999999999998765322111111100000 00 0111000000 0000000000111234578
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHH----HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK----SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
++++++|||||||.||+|.++|.++.+...... ..+.+..+++.+..+|++|..++.. .+.++..|+++++.+
T Consensus 170 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~~~-- 246 (540)
T PRK05857 170 DPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVTGG-- 246 (540)
T ss_pred CeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHH-HHHHhhcceeEEecC--
Confidence 999999999999999999999999987654332 2235567889999999999998875 677888888877643
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
.++..+++.++++++|.++++|+++..+....... ..+++++|.++++|+.++....++ .+.+++++++.||+||++
T Consensus 247 -~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-~~~~~~lr~~~~gG~~~~~~~~~~-~~~~g~~i~~~YG~TE~~ 323 (540)
T PRK05857 247 -ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-NATVPSLRLVGYGGSRAIAADVRF-IEATGVRTAQVYGLSETG 323 (540)
T ss_pred -CChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-CCcCccceEEEEcCccCCchhHHH-HHHhCCeeecccCCCcCC
Confidence 36789999999999999999999999998765433 245789999999999998877754 456799999999999998
Q ss_pred cccccCCCCCCC--CCCCCCcccc-CCcEEEEECCCCCc------cCCCceeEEEEeCCCcccccCCChhhhhhhccCCe
Q 009867 318 HLMSSNPLPEDG--PHKPGSVGRP-VGQEIAILDEIGVP------QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388 (523)
Q Consensus 318 ~~~~~~~~~~~~--~~~~~~~g~~-~~~~~~i~d~~~~~------~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 388 (523)
............ ....+++|+| +|++++++|+++.. ++.|+.|||+++|++++.||+++++.+.+.|.+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~ 403 (540)
T PRK05857 324 CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGW 403 (540)
T ss_pred ceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCc
Confidence 654433221111 2245789999 79999999977652 24578999999999999999999999999999999
Q ss_pred eeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC-HH
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID-EE 467 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 467 (523)
|+|||++++|++|.+++.||.++++|.+|.+++|.+||++|..+|+|.+++|++.++...++.+.++++..+..... .+
T Consensus 404 ~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 483 (540)
T PRK05857 404 VNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAAR 483 (540)
T ss_pred eeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999998887777777777765432111 22
Q ss_pred ----HHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 468 ----EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 468 ----~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
.+.+++++.++.+++|..+++++++|+|++||++|+.|++.+.+
T Consensus 484 ~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 484 ALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 34456667799999999999999999999999999999887764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=548.72 Aligned_cols=505 Identities=20% Similarity=0.302 Sum_probs=392.4
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC----C--c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS----G--K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~----~--~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
.|+.++|.+.++++|+++|+... + + +++||+||.++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 58999999999999999999642 1 1 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhc--ccccceeeeecCCc----------cccccc
Q 009867 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL--NISHATATLLDADS----------ELTLSL 143 (523)
Q Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~ 143 (523)
+++|++++|+++.++.+++.++++++++++++++......+....... .+...+ ...+... .....+
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii-~~~~~~~~~~~~~~~~~~~~~~~ 201 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIV-SFGDVSSEQKEEAEELGVSCFSW 201 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEE-EECCCChhhhhhhhcCCcEEEEH
Confidence 999999999999999999999999999999999876554443332221 122211 1111100 000011
Q ss_pred ccccc-cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc-----cCCCceEEEEcChhhHHHH
Q 009867 144 AHSES-DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-----LTESDSTVIVLPLFHVHGM 217 (523)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~g~ 217 (523)
.+... ...........++++++++|||||||.||||+++|.++...+......++ +.++|++++.+|++|.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~ 281 (660)
T PLN02861 202 EEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQ 281 (660)
T ss_pred HHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHH
Confidence 10000 00001112345799999999999999999999999999988766555443 4678999999999999998
Q ss_pred HHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhccc--------------------------
Q 009867 218 LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV-------------------------- 271 (523)
Q Consensus 218 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~-------------------------- 271 (523)
.. .+.++..|+++++.. .++..+++.+++++||+++++|.++..+.+...
T Consensus 282 ~~-~~~~l~~G~~v~~~~---~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~ 357 (660)
T PLN02861 282 VI-ETYCISKGASIGFWQ---GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR 357 (660)
T ss_pred HH-HHHHHHhCCEEEEeC---CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence 76 455789999988864 378899999999999999999999998864100
Q ss_pred ----C---CCCC----------CC-CCcceEEeccCCCCHHHHHHHHHHhCC-ceeccccccccccccccCCCCCCCCCC
Q 009867 272 ----A---KPEP----------VY-PKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEATHLMSSNPLPEDGPHK 332 (523)
Q Consensus 272 ----~---~~~~----------~~-~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~~~~~~ 332 (523)
. .... .+ .++|.+++||+++++++.+ +.+.++. .+++.||+||+++.++..... ....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~ 434 (660)
T PLN02861 358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIAN--VFSM 434 (660)
T ss_pred cCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccc--cCCC
Confidence 0 0000 01 4789999999999999755 5556664 799999999998665543211 1224
Q ss_pred CCCcccc-CCcEEEEEC--CCC-CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecc
Q 009867 333 PGSVGRP-VGQEIAILD--EIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGR 408 (523)
Q Consensus 333 ~~~~g~~-~~~~~~i~d--~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR 408 (523)
.+++|+| ++++++++| +.| ...+.++.|||+++||+++.|||++|+.+++.|.+|||+|||+|++|+||.+++.||
T Consensus 435 ~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR 514 (660)
T PLN02861 435 VGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDR 514 (660)
T ss_pred CCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEec
Confidence 5789999 799999987 434 334556789999999999999999999999999999999999999999999999999
Q ss_pred cccceec-CCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC----------CCCCH----------H
Q 009867 409 IKELINR-GGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG----------SNIDE----------E 467 (523)
Q Consensus 409 ~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------~~~~~----------~ 467 (523)
++|+||. +|++|+|.+||+++.++|.|.+++|++.+ .++.++++|++... ...+. .
T Consensus 515 ~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 591 (660)
T PLN02861 515 KKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARK 591 (660)
T ss_pred cccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHH
Confidence 9999995 89999999999999999999999999876 23457777776522 00111 1
Q ss_pred HHHHHHHh-----cCcCCCCCcEEEEeC-Cc-----CCCCCccccHHHHHHHHHHhhhhhcCC
Q 009867 468 EVLRFCKK-----NVAAFKVPKRVFITN-EL-----PKTASGKIQRRIVSEHFLAQVSAAKVP 519 (523)
Q Consensus 468 ~l~~~~~~-----~l~~~~~p~~i~~~~-~l-----p~t~~GK~~r~~l~~~~~~~~~~~~~~ 519 (523)
.+.+.+++ .++.++.++.+.+.+ .+ ++|+++|+.|+.+.+.|.++|++.|..
T Consensus 592 ~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~~ 654 (660)
T PLN02861 592 YILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSE 654 (660)
T ss_pred HHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 23344432 488899998888865 45 799999999999999999999987754
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=547.03 Aligned_cols=498 Identities=17% Similarity=0.205 Sum_probs=391.5
Q ss_pred CHHHHHHHHHhhcCCceeEEECCc----ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGK----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~----~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|+.+.+.. +.++++|+++.+. +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 88 n~~~~~~~---~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Ga 164 (652)
T TIGR01217 88 NYAENLLR---AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGA 164 (652)
T ss_pred eHHHHHhc---cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCe
Confidence 44444443 3578999887431 5799999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc-cccceeeeecCC-c-------ccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDAD-S-------ELTLS 142 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~-~-------~~~~~ 142 (523)
+++|+++.++.+++.+++++++++++|+++... +.+.......+ +...+. +.... . .....
T Consensus 165 v~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~ 243 (652)
T TIGR01217 165 IWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVH-IPYLGPRETEAPKIDGALD 243 (652)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEE-EeCCCCcccccccccCccc
Confidence 999999999999999999999999999987542 22333222222 111111 11000 0 00000
Q ss_pred ccccccc--ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH-HHHHHHHHhccCCCceEEEEcChhhHHHHHH
Q 009867 143 LAHSESD--TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVIVLPLFHVHGMLA 219 (523)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 219 (523)
+.+.... ...........+++++++|||||||.||+|+++|.+++. ........+++.++|++++..|+.|... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~- 321 (652)
T TIGR01217 244 LEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-N- 321 (652)
T ss_pred HHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-H-
Confidence 1110000 001111234568999999999999999999999998654 4444555678899999999999988753 2
Q ss_pred HHHHhhhcCcEEEeCCCCC--CChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHH
Q 009867 220 GLLSSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 220 ~~~~~l~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
.++.++..|+++++.++.. .++..+++.++++++|++...|.+++.+...... ....+++++|.++++|++++++..
T Consensus 322 ~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 401 (652)
T TIGR01217 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGF 401 (652)
T ss_pred HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHH
Confidence 2558899999999876422 2678999999999999998888887777654211 122457899999999999999999
Q ss_pred HHHHHHhC--CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCC--Cccc
Q 009867 297 SRLEEAFG--APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGP--NVTK 371 (523)
Q Consensus 297 ~~~~~~~~--~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~--~~~~ 371 (523)
+++.+.++ ..+.+.||+||++....... +......+++|.| +|.+++++|++|+++ .|+.|||+++|| +++.
T Consensus 402 ~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~--~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~ 478 (652)
T TIGR01217 402 RWVYDEIKADVWLASISGGTDICSCFAGAN--PTLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPI 478 (652)
T ss_pred HHHHHHhCCCceEEeccCHHHHhccccCCC--CCCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCcccc
Confidence 99998885 35678899999753333221 1122345677888 799999999999998 599999999996 5889
Q ss_pred ccCCChhhhh---hhc--cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCC
Q 009867 372 GYKNNPEANK---SAF--LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDD 446 (523)
Q Consensus 372 gy~~~~~~~~---~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~ 446 (523)
|||++++.+. ..+ .+|||+|||+|++|+||.+++.||.||+||.+|++|+|.+||++|.++|+|.+++|++++++
T Consensus 479 gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~ 558 (652)
T TIGR01217 479 RFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQP 558 (652)
T ss_pred ceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecC
Confidence 9999987543 112 26899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 447 KYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 447 ~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
..++.++++|++.++...++ ++|+++++++|+++++|..|+++++||+|++||++|+.|++.+..
T Consensus 559 ~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 559 DGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcC
Confidence 88999999999987765554 579999999999999999999999999999999999999998754
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=549.53 Aligned_cols=500 Identities=19% Similarity=0.220 Sum_probs=398.6
Q ss_pred CHHHHHHHHHhhcCCceeEEECCc----ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGK----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~----~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|+.+.+... .+|+++|+++.+. +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 444544432 5899999987531 5899999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc-cccceeeeecCCc-------cccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN-ISHATATLLDADS-------ELTLSL 143 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~ 143 (523)
+++|+++.++.+++.++++.++++++|+++... ..+........ +.... .+..... .....+
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~ 243 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVV-VVPYLGPAAAAAALPGALLW 243 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEE-EEecCCCcccccccCCcccH
Confidence 999999999999999999999999999987532 12222222211 11111 1111000 000001
Q ss_pred ccccc--cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH-HHHHHHHHhccCCCceEEEEcChhhHHHHHHH
Q 009867 144 AHSES--DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA-SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAG 220 (523)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 220 (523)
.+... ............+++++++|||||||.||+|+++|.+++. ........+++.++|+++...++.|.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~ 321 (655)
T PRK03584 244 EDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--W 321 (655)
T ss_pred HHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--H
Confidence 11000 1111112234568999999999999999999999998754 45555667788999999999888876532 3
Q ss_pred HHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHH
Q 009867 221 LLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILS 297 (523)
Q Consensus 221 ~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~ 297 (523)
++.++..|+++++.++. ..++..+++.++++++|++..+|++++.+.+.... ....+++++|.++++|+++++++.+
T Consensus 322 ~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~ 401 (655)
T PRK03584 322 LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFD 401 (655)
T ss_pred HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHH
Confidence 66889999999986542 34789999999999999999999999998765321 1224578999999999999999999
Q ss_pred HHHHHh--CCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCC--Ccccc
Q 009867 298 RLEEAF--GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGP--NVTKG 372 (523)
Q Consensus 298 ~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~--~~~~g 372 (523)
++.+.+ +..+++.||+||++..+.... +......+++|.| +|++++++|++|.++ .|+.|||+|+|| +++.|
T Consensus 402 ~~~~~~~~~~~~~~~yG~TE~~~~~~~~~--~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~g 478 (655)
T PRK03584 402 WVYEHVKADVWLASISGGTDICSCFVGGN--PLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLG 478 (655)
T ss_pred HHHHHhCCCceEEeccChHhhhcccccCC--CCCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcce
Confidence 999988 477999999999865433221 1123345778888 799999999999998 799999999996 78899
Q ss_pred cCCChhhhhh--h-c--cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCC
Q 009867 373 YKNNPEANKS--A-F--LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447 (523)
Q Consensus 373 y~~~~~~~~~--~-~--~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~ 447 (523)
|+++++.+.. . + .+|||+|||++++|+||.+++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++.
T Consensus 479 y~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~ 558 (655)
T PRK03584 479 FWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPD 558 (655)
T ss_pred eeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCC
Confidence 9998875431 1 2 257999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 448 YGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 448 ~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
.++.+.++|++.++...++ ++++++++++|+++++|..|+++++||+|++||++|+.|++.+.+.
T Consensus 559 ~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~ 626 (655)
T PRK03584 559 GDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGR 626 (655)
T ss_pred CCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 8899999999987655543 5799999999999999999999999999999999999999988753
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-67 Score=528.78 Aligned_cols=480 Identities=28% Similarity=0.428 Sum_probs=404.1
Q ss_pred HHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCC
Q 009867 11 NQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89 (523)
Q Consensus 11 ~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~ 89 (523)
+.+++.+|+++|+.+. ++..+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 4567889999999863 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEe
Q 009867 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169 (523)
Q Consensus 90 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 169 (523)
+.+++.++++.++++++++++...... .. ...+.. ..................+++++++||
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~------~~----~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~T 143 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAGR------TD----VEDLAA--------FIASADALEPADTPSIPPERVSLILFT 143 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhccc------cc----ccchhh--------hhhhccccccccCCCCCCCCceEEEeC
Confidence 999999999999999999976533210 00 000000 000000000011112346789999999
Q ss_pred eCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHH
Q 009867 170 SGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMI 249 (523)
Q Consensus 170 SGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~ 249 (523)
|||||.||+|.++|+++......+.....+.+++++++.+|++|.+++...+..++..|+++++.+ .+.+...+..+.
T Consensus 144 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~~~~~ 221 (488)
T PRK09088 144 SGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSN--GFEPKRTLGRLG 221 (488)
T ss_pred CCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcC--CCCHHHHHHHHH
Confidence 999999999999999998877777766778889999999999999999888889999999999876 567888888886
Q ss_pred --hcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCC
Q 009867 250 --KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPE 327 (523)
Q Consensus 250 --~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 327 (523)
++++|+++++|++++.+.+...... ..+++++.+++||+++++...+.+.+. |+++++.||+||++.+........
T Consensus 222 ~~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~ 299 (488)
T PRK09088 222 DPALGITHYFCVPQMAQAFRAQPGFDA-AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCD 299 (488)
T ss_pred hhccCCcEEeeHHHHHHHHHhCcCcCc-cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcc
Confidence 4899999999999999876543222 346789999999999999888877754 899999999999987554322111
Q ss_pred CCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEE
Q 009867 328 DGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHL 405 (523)
Q Consensus 328 ~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~ 405 (523)
......+++|.| ++++++++|+++.+++.|+.|||+++|++++.||+++++.+++.+ .+|||+|||+++++++|.+++
T Consensus 300 ~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i 379 (488)
T PRK09088 300 VIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWV 379 (488)
T ss_pred cccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEE
Confidence 122345778998 789999999999999999999999999999999999999888777 479999999999999999999
Q ss_pred ecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcE
Q 009867 406 VGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKR 485 (523)
Q Consensus 406 ~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 485 (523)
.||.+|+++.+|++++|.+||++|.++++|.+++|++.+++..++...++++..++...+.+++.++++++++.+++|..
T Consensus 380 ~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 459 (488)
T PRK09088 380 VDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKH 459 (488)
T ss_pred eccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCE
Confidence 99999999999999999999999999999999999999887777777888888776666788999999999999999999
Q ss_pred EEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 486 VFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 486 i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+.+++++|+|++||++|++|++++.+.
T Consensus 460 i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 460 LRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred EEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 999999999999999999999988764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=555.52 Aligned_cols=494 Identities=23% Similarity=0.321 Sum_probs=397.5
Q ss_pred CCCCHHHHHHHHHhhcCC-ceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
+..|+.++|.++++++|+ ++|+.+.+.+++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 457899999999999998 5777653336899999999999999999987 59999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHH--HHHhhcccccceeeeecCCcccccc---ccccccccccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQ--AAASKLNISHATATLLDADSELTLS---LAHSESDTNAISK 155 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 155 (523)
+++|+++.++.+++.++++++++++++++.+...... .......... .+...+........ .............
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKDDVTTADKLWIFAHLLMPRLAQ 359 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhhhcchhHHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999866433210 0011100000 00011000000000 0000000000011
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
....++++++++|||||||.||+|.++|.++.+........+++.++|++++.+|++|.+++...++.++..|+++++.+
T Consensus 360 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~ 439 (718)
T PRK08043 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYP 439 (718)
T ss_pred CCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeC
Confidence 23457899999999999999999999999999888888888889999999999999999998887889999999998866
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE 315 (523)
. ..+...+++.+.++++|+++++|+++..+.+... ..+++++|.+++||+++++++.+.+.+.+|+++++.||+||
T Consensus 440 ~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE 515 (718)
T PRK08043 440 S-PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN---PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE 515 (718)
T ss_pred C-cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC---cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCccc
Confidence 3 3456778899999999999999999988765421 23468999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCC--hhh-------hhh-hc
Q 009867 316 ATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNN--PEA-------NKS-AF 384 (523)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~--~~~-------~~~-~~ 384 (523)
+++.++.... .....+++|+| ++.+++++|.++. ++.|||+++|++++.||+++ ++. +.+ .+
T Consensus 516 ~~~~~~~~~~---~~~~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~ 588 (718)
T PRK08043 516 CAPVVSINVP---MAAKPGTVGRILPGMDARLLSVPGI----EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEM 588 (718)
T ss_pred ccceEEecCC---cccCCCCCCCcCCCCeeEEecCCCC----CCceEEEEecCCccccccCCCCcccccccccccccccc
Confidence 9876654321 12356789999 7999999986552 46699999999999999983 331 111 13
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||++++|+||.+++.||.+|+||.+|++|+|.+||+++.+++.+.++++++.+++..++.+++++. +...
T Consensus 589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~ 665 (718)
T PRK08043 589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSEL 665 (718)
T ss_pred cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---Cccc
Confidence 5789999999999999999999999999999999999999999999999888888888888877777766553 3446
Q ss_pred CHHHHHHHHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 465 DEEEVLRFCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 465 ~~~~l~~~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+.++++++++++ |+.|++|..+++++++|+|++||++|+.|++++.+
T Consensus 666 ~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 666 TREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred CHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 778899999987 99999999999999999999999999999988765
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=542.79 Aligned_cols=502 Identities=23% Similarity=0.276 Sum_probs=393.1
Q ss_pred CHHH-HHHHHHhhcCCceeEEECCc-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 009867 5 TLIG-LLNQVIDQFSSKRALSVSGK-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76 (523)
Q Consensus 5 ti~~-~l~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~ 76 (523)
|+.+ +|++++.++|+++|+++.+. +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 4544 55566567899999987542 479999999999999999999999999999999999999999999999
Q ss_pred HhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch------hHHHHHHhhcccccceeeeecCCcc-------ccccc
Q 009867 77 RARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN------AAAQAAASKLNISHATATLLDADSE-------LTLSL 143 (523)
Q Consensus 77 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 143 (523)
++|++++|++|.++.+++.+++++++++++|+++... +....+..... ... +.+...... ....+
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~-~~~-iv~~~~~~~~~~~~~~~~~~~ 332 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA-PKA-IVLPADGKSVRVKLREGDMSW 332 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC-CcE-EEEeCCCCccccccccCCccH
Confidence 9999999999999999999999999999999987542 11111111111 111 111100000 00011
Q ss_pred cccccc------ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHH
Q 009867 144 AHSESD------TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM 217 (523)
Q Consensus 144 ~~~~~~------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 217 (523)
.+.... ...........+++++++|||||||.||+|+++|.+++.........+++.++|+++...+++|+++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~ 412 (728)
T PLN03052 333 DDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGP 412 (728)
T ss_pred HHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHH
Confidence 110000 00011112346899999999999999999999999987766655556788999999999999999987
Q ss_pred HHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHH
Q 009867 218 LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297 (523)
Q Consensus 218 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~ 297 (523)
.. ++.+|..|+++++.++ ...+..+++.++++++|++.++|++++.+.+.... ...+++++|.++++|++++++...
T Consensus 413 ~~-v~~~L~~Gat~vl~~g-~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~-~~~dlssLr~i~s~Ge~l~~~~~~ 489 (728)
T PLN03052 413 WL-VYASLLNGATLALYNG-SPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM-AGLDWSSIRCFGSTGEASSVDDYL 489 (728)
T ss_pred HH-HHHHHHhCCEEEEeCC-CCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc-ccCChhheeEEEecCCCCCHHHHH
Confidence 54 7899999999999774 34556799999999999999999999999876432 234678999999999999999998
Q ss_pred HHHHHhC-CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCc--eeEEEEeCCCc--cc
Q 009867 298 RLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGA--KGEVCIRGPNV--TK 371 (523)
Q Consensus 298 ~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~--~Gel~v~~~~~--~~ 371 (523)
++.+.++ .++.+.||+||+++.+..... ......+++|.| +|.+++++|++|++++.|+ .|||++.++.. ..
T Consensus 490 ~~~~~~~~~~i~~~yG~TE~~~~~~~~~~--~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~ 567 (728)
T PLN03052 490 WLMSRAGYKPIIEYCGGTELGGGFVTGSL--LQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASS 567 (728)
T ss_pred HHHHhcCCCCeEeeccChhhCcccccCCC--CCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCc
Confidence 8888775 579999999999865443321 122345678888 7999999999999999885 69999986532 34
Q ss_pred ccCCChhhhhhhcc-----CC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHh-cCCCceeeEEEee
Q 009867 372 GYKNNPEANKSAFL-----FG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLL-SHPDIAQAVAFGV 443 (523)
Q Consensus 372 gy~~~~~~~~~~~~-----~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v~~~ 443 (523)
+|+++.. ....|. .+ ||+|||+++++++|.+++.||+||+||++|++|.+.|||+++. .+|+|.+++|+++
T Consensus 568 ~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~ 646 (728)
T PLN03052 568 TLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGV 646 (728)
T ss_pred cccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEee
Confidence 5666532 222221 23 8999999999999999999999999999999999999999995 7899999999999
Q ss_pred cCCCCC-ceeEEEEEeC--CCCCCCHHHHHH----HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 444 PDDKYG-EEINCAIIPR--EGSNIDEEEVLR----FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 444 ~~~~~~-~~~~~~v~~~--~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+++..+ +.++++|++. ++...+.++|++ .++++|++++.|..|+++++||+|++||++|+.|++.+.+...
T Consensus 647 ~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~~ 724 (728)
T PLN03052 647 PPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQELS 724 (728)
T ss_pred ecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhhh
Confidence 988665 7889999987 555455555555 4567788899999999999999999999999999999987765
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=530.76 Aligned_cols=498 Identities=30% Similarity=0.472 Sum_probs=414.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
..|+.++|++.|+++|+++|+.+.+ .+.+||+||+++++++|..|.++|+++||+|+++++|+.+++++++||+++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 4689999999999999999998754 168999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc---cccccccc--ccccccc
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE---LTLSLAHS--ESDTNAI 153 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~ 153 (523)
|+++++++|..+.+++.++++.++++.++++++..+.+...................... ....+... .......
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLC 165 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCcccc
Confidence 999999999999999999999999999999988766655543332211111111111000 00000000 0000011
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.......+++++++|||||||.||+|.++|.++............+.++++++..+|++|..+....++.++..|+++++
T Consensus 166 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 245 (517)
T PRK08008 166 YAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVL 245 (517)
T ss_pred ccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEE
Confidence 11233568999999999999999999999999986544333444678899999999999998888888999999999999
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~ 313 (523)
.+ .+++..+++.++++++|++.++|++++.++....... .....++.+.++ ..++++....+.+.+++++++.||+
T Consensus 246 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~ 321 (517)
T PRK08008 246 LE--KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN-DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGM 321 (517)
T ss_pred cc--ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc-cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccc
Confidence 87 5788999999999999999999999999876644332 223567777665 4789999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC---CCcccccCCChhhhhhhc-cCCe
Q 009867 314 TEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG---PNVTKGYKNNPEANKSAF-LFGW 388 (523)
Q Consensus 314 tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~---~~~~~gy~~~~~~~~~~~-~~~~ 388 (523)
||++..+..... .......++|.| ++++++++|+++.+++.|+.|||+++| ++++.||+++++.+.+.+ .+||
T Consensus 322 tE~~~~~~~~~~--~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~ 399 (517)
T PRK08008 322 TETIVGIIGDRP--GDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGW 399 (517)
T ss_pred cccccccccCCc--cccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCC
Confidence 999865554432 123345678988 799999999999999999999999998 589999999999998888 5799
Q ss_pred eeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEE 468 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (523)
|+|||+++++++|.+++.||.+|++|.+|.+++|.+||.++.+++.|.+++|++.++...++.+.+++++..+...+.++
T Consensus 400 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 479 (517)
T PRK08008 400 LHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEE 479 (517)
T ss_pred eeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998888788899999988877777889
Q ss_pred HHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 469 VLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 469 l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
++++++++++++++|..+++++++|+|++||++|+.|+
T Consensus 480 l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 480 FFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred HHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 99999999999999999999999999999999999763
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=547.17 Aligned_cols=498 Identities=23% Similarity=0.370 Sum_probs=398.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
..|+.++|++.++.+|+++|+++.+ .+.+||+||+++++++|++|.+. +++||+|+++++|++++++++||
T Consensus 20 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA 98 (631)
T PRK07769 20 NTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFG 98 (631)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHH
Confidence 4689999999999999999998632 15799999999999999999987 89999999999999999999999
Q ss_pred HHHhcCEEeeC-CCCCC--HHHHHHHHhhCCceEEEecccchhHHHHHHhhcccc-cceeeeecCCcccccccccccccc
Q 009867 75 VIRARATAAPL-NAAYT--PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS-HATATLLDADSELTLSLAHSESDT 150 (523)
Q Consensus 75 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 150 (523)
|+++|++++|+ ++..+ .+++.+++++++++++++++................ ...+...+... ....
T Consensus 99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-- 169 (631)
T PRK07769 99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP-------DEVG-- 169 (631)
T ss_pred HHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccc-------cccc--
Confidence 99999999999 55554 688999999999999999877654443322221110 00000011000 0000
Q ss_pred cccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcE
Q 009867 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230 (523)
Q Consensus 151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 230 (523)
.........++++++++|||||||.||+|.++|.++..........+++.++++++..+|++|.+|+.. ++.+++.|++
T Consensus 170 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~ 248 (631)
T PRK07769 170 ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHY 248 (631)
T ss_pred cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCe
Confidence 001111345789999999999999999999999999988888778888999999999999999999877 4556667888
Q ss_pred EEeCCCCCC--ChhHHHHHHHhcCc---cEEeechHHHHHHHhcc--cC--CCCCCCCCcceEEeccCCCCHHHHHHHHH
Q 009867 231 VTLPAAGRF--SASTFWQDMIKYNA---TWYTAVPTIHQIVLDRH--VA--KPEPVYPKLRFIRSCSASLAPVILSRLEE 301 (523)
Q Consensus 231 ~~~~~~~~~--~~~~~~~~i~~~~~---t~l~~~P~~~~~l~~~~--~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~~~ 301 (523)
+++..+..+ ++..+++.+.++++ +++..+|.++..++... .. ....+++++|.+++||++++++..+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~ 328 (631)
T PRK07769 249 ITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNE 328 (631)
T ss_pred EEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHHH
Confidence 777653233 78889999998876 78999999887766431 11 11235789999999999999999999999
Q ss_pred Hh---CC---ceeccccccccccccccCCCCCCC------------------------CCCCCCcccc-CCcEEEEEC-C
Q 009867 302 AF---GA---PVLEAYAMTEATHLMSSNPLPEDG------------------------PHKPGSVGRP-VGQEIAILD-E 349 (523)
Q Consensus 302 ~~---~~---~v~~~yG~tE~~~~~~~~~~~~~~------------------------~~~~~~~g~~-~~~~~~i~d-~ 349 (523)
.| |+ .+++.||+||++.+++........ .....++|+| ++..++++| +
T Consensus 329 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~ 408 (631)
T PRK07769 329 AFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPE 408 (631)
T ss_pred HHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCC
Confidence 87 33 489999999998665543321100 0012367888 688999999 6
Q ss_pred CCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc------------------CCeeeeCceeeEcCCCcEEEeccccc
Q 009867 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------------FGWFHTGDIGYFDSDGYLHLVGRIKE 411 (523)
Q Consensus 350 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~~~~~TGD~~~~~~~g~~~~~GR~~~ 411 (523)
+|.+++.|+.|||+++|++++.||+++++.+++.|. +|||+|||+|+++ +|.+++.||.+|
T Consensus 409 ~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d 487 (631)
T PRK07769 409 TASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKD 487 (631)
T ss_pred CCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEccccc
Confidence 789999999999999999999999999999988874 3899999999995 999999999999
Q ss_pred ceecCCcccChHHHHHHHhc-CCCcee--eEEEeecC-------------------CCCCceeEEEEEeCCCC-CCCHHH
Q 009867 412 LINRGGEKISPIEVDAVLLS-HPDIAQ--AVAFGVPD-------------------DKYGEEINCAIIPREGS-NIDEEE 468 (523)
Q Consensus 412 ~i~~~G~~v~~~~ie~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~v~~~~~~-~~~~~~ 468 (523)
+||++|++|+|.+||+.|.+ +|.|.+ ++|+++++ +..++.+++++++.++. ..+.++
T Consensus 488 ~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~ 567 (631)
T PRK07769 488 LVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQP 567 (631)
T ss_pred EEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHH
Confidence 99999999999999999986 899997 88998887 45678888899887763 467789
Q ss_pred HHHHHHhcCcC-CC-CCcEEEEeC--CcCCCCCccccHHHHHHHHHHh
Q 009867 469 VLRFCKKNVAA-FK-VPKRVFITN--ELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 469 l~~~~~~~l~~-~~-~p~~i~~~~--~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
|.+++++++.. +. .|..+++++ +||+|++||++|++|++.|.+.
T Consensus 568 l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 568 IADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred HHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence 99999999985 56 588888886 6999999999999999988753
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=531.86 Aligned_cols=504 Identities=24% Similarity=0.371 Sum_probs=412.7
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC--Cc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS--GK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~--~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
.++.++|++++..+|+++++.+. +. +.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 47899999999999999888753 22 5799999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc--c--c-cccccccc-ccccccc
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS--E--L-TLSLAHSE-SDTNAIS 154 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~-~~~~~~~ 154 (523)
+++|++|.++.+++.++++.++++.++++....+..............++...+... . . ...+.+.. .......
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYD 169 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcC
Confidence 999999999999999999999999999998776655444333221111111111100 0 0 00000000 0001111
Q ss_pred cCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH--HHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEE
Q 009867 155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS--NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232 (523)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 232 (523)
.....++++++++|||||||.||+|.++|.++..... .....+++.++|+++...|++|.+++.. .+.++..|++++
T Consensus 170 ~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~ 248 (539)
T PRK07008 170 WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLV 248 (539)
T ss_pred cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEE
Confidence 1234568899999999999999999999999864332 2334667888999999999999877654 577788999998
Q ss_pred eCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
+++. .+++..+++.++++++|++.++|+++..+.+...... ..+++++.++++|+++++++.+.+.+.++.++++.||
T Consensus 249 ~~~~-~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG 326 (539)
T PRK07008 249 LPGP-DLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWG 326 (539)
T ss_pred EecC-CcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccc
Confidence 8754 5688999999999999999999999999987654432 4578999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCC--------CCCCCCcccc-CCcEEEEECCCCCccCCC--ceeEEEEeCCCcccccCCChhhhh
Q 009867 313 MTEATHLMSSNPLPEDG--------PHKPGSVGRP-VGQEIAILDEIGVPQEGG--AKGEVCIRGPNVTKGYKNNPEANK 381 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~--------~~~~~~~g~~-~~~~~~i~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~ 381 (523)
+||++..++.+...... .....++|+| +++.++++|+++.+++.+ +.|||+++|++++.||++++.
T Consensus 327 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~--- 403 (539)
T PRK07008 327 MTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA--- 403 (539)
T ss_pred cccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh---
Confidence 99998765544321100 0123568888 789999999888888753 579999999999999999873
Q ss_pred hhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 382 SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 382 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
..+.+|||+|||+++++++|.+++.||.+|+++.+|.+++|.+||+.+..+|.|.++++++.+++..++.+.++++..++
T Consensus 404 ~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 483 (539)
T PRK07008 404 SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG 483 (539)
T ss_pred hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCC
Confidence 34558999999999999999999999999999999999999999999999999999999999888777888888888776
Q ss_pred CCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 462 ~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
...+.+++++++++++++|++|..+++++++|+|++||++|+.|++++.+..
T Consensus 484 ~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~ 535 (539)
T PRK07008 484 AEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYV 535 (539)
T ss_pred CccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 6677889999999999999999999999999999999999999999988753
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=526.97 Aligned_cols=486 Identities=25% Similarity=0.373 Sum_probs=407.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.++|.+.+. ++++++...+ +.+||.||+++++++|.+|+++ |++++++|+++++|+++++++++||+++|++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~-~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 80 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFED-SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV 80 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECC-cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4589999998884 7899998876 6999999999999999999997 8999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS 161 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
++|+++.++.+++.++++.++++++++++.......... ..+. .+ ..+. ........ .............++
T Consensus 81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~--~~~~--~~-~~~~--~~~~~~l~-~~~~~~~~~~~~~~~ 152 (529)
T PRK07867 81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD--PGVR--VI-NVDS--PAWADELA-AHRDAEPPFRVADPD 152 (529)
T ss_pred EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc--cCce--EE-Eecc--ccHHHHhc-ccCCCCCCcccCCcc
Confidence 999999999999999999999999999987655433221 0111 11 1110 00000000 000111112234678
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCCh
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 241 (523)
++++++|||||||.||+|+++|.++..........+++.++|+++..+|++|..++...++.++..|+++++.. .+++
T Consensus 153 ~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~--~~~~ 230 (529)
T PRK07867 153 DLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRR--KFSA 230 (529)
T ss_pred ceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecC--CCCH
Confidence 99999999999999999999999999888888888899999999999999999999887888999999999876 6689
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
..+++.++++++|++.++|+.+..++....... ....+++ +++||+.+++.. ..+.+.+|+++++.||+||++..+.
T Consensus 231 ~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~-~~~~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~ 307 (529)
T PRK07867 231 SGFLPDVRRYGATYANYVGKPLSYVLATPERPD-DADNPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAIT 307 (529)
T ss_pred HHHHHHHHHhCCeEEeccHHHHHHHHhCCCccc-ccccceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccccccc
Confidence 999999999999999999999999887654322 2235677 456788877664 6677788999999999999986554
Q ss_pred cCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCc------------eeEEEE-eCCCcccccCCChhhhhhhccC
Q 009867 322 SNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGA------------KGEVCI-RGPNVTKGYKNNPEANKSAFLF 386 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~------------~Gel~v-~~~~~~~gy~~~~~~~~~~~~~ 386 (523)
... ....+++|.| ++ ++++| +++.+++.|+ .|||++ +|++++.||+++++.+...+.+
T Consensus 308 ~~~-----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~ 380 (529)
T PRK07867 308 RTP-----DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRG 380 (529)
T ss_pred cCC-----CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcC
Confidence 332 1234568888 45 77777 6788888888 999999 9999999999999999988999
Q ss_pred CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 009867 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE 466 (523)
Q Consensus 387 ~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 466 (523)
|||+|||+++++++|.+++.||.+|+++.+|++++|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.
T Consensus 381 g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~ 460 (529)
T PRK07867 381 GVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDP 460 (529)
T ss_pred CeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999888777888
Q ss_pred HHHHHHHHhc--CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 467 EEVLRFCKKN--VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 467 ~~l~~~~~~~--l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++++++.+ |+.+++|..+++++++|+|++||++|+.|+++...
T Consensus 461 ~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 461 DAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred HHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 9999999875 99999999999999999999999999999987754
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=528.45 Aligned_cols=505 Identities=27% Similarity=0.385 Sum_probs=412.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.+.++.+|+++|++..+ +++||+||++++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 9 ~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~ 87 (540)
T PRK06164 9 ADTLASLLDAHARARPDAVALIDED-RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87 (540)
T ss_pred CCCHHHHHHHHHHhCCCCeEEecCC-CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEE
Confidence 3589999999999999999999665 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchh-HHHHHHhhc------ccccceeeeecCCcccc----cccccc---cc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-AAQAAASKL------NISHATATLLDADSELT----LSLAHS---ES 148 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~---~~ 148 (523)
+|+++..+.+++.++++.+++++++++++... .+....... ....... ......... ..+... ..
T Consensus 88 v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (540)
T PRK06164 88 IAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAV-VDDAADATPAPAPGARVQLFALPD 166 (540)
T ss_pred EecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEE-eccCcccCCCCCcccccccccccc
Confidence 99999999999999999999999999876432 111111110 1111111 110000000 000000 00
Q ss_pred ccc--ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhh
Q 009867 149 DTN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFA 226 (523)
Q Consensus 149 ~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 226 (523)
... .........+++++++|||||||.||+|.++|.++......+...+++.+++++++.+|++|.+|+.. ++.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~ 245 (540)
T PRK06164 167 PAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFST-LLGALA 245 (540)
T ss_pred cCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHH-HHHHHh
Confidence 000 00011234688999999999999999999999999998888888889999999999999999999864 889999
Q ss_pred cCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEecc-CCCCHHHHHHHHHHhCC
Q 009867 227 AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS-ASLAPVILSRLEEAFGA 305 (523)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g-~~~~~~~~~~~~~~~~~ 305 (523)
.|+++++.+ .+++..+++.++++++|+++++|+++..+.+... ....+++++.+.++| .....+..+++... ++
T Consensus 246 ~G~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (540)
T PRK06164 246 GGAPLVCEP--VFDAARTARALRRHRVTHTFGNDEMLRRILDTAG--ERADFPSARLFGFASFAPALGELAALARAR-GV 320 (540)
T ss_pred cCceEEecC--CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc--ccCCCcceeeeeeccCCcchHHHHHHHhhc-CC
Confidence 999999876 6788999999999999999999999999987722 223467888876665 45555666666554 89
Q ss_pred ceeccccccccccccccCCCCCCCCCCCCCcccc--CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 306 ~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
++++.||+||++..++...............|.+ +++.++++| +++.+++.|+.|||+++|++++.||+++++.+..
T Consensus 321 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~ 400 (540)
T PRK06164 321 PLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATAR 400 (540)
T ss_pred ceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhh
Confidence 9999999999987766554322222333456776 578899999 7789999999999999999999999999999988
Q ss_pred hc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 383 ~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
.| .+|||+|||+|+++++|.+++.||.++++|.+|++++|.+||+.+.++++|.+++|++.+.. .+..+.++++..++
T Consensus 401 ~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~ 479 (540)
T PRK06164 401 ALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDG 479 (540)
T ss_pred cccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCC
Confidence 88 57899999999999999999999999999999999999999999999999999999998743 34667888888777
Q ss_pred CCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCc---cccHHHHHHHHHHhhhhh
Q 009867 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASG---KIQRRIVSEHFLAQVSAA 516 (523)
Q Consensus 462 ~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~G---K~~r~~l~~~~~~~~~~~ 516 (523)
...+.++++++++++++++++|..+++++++|+|++| |++|++|++++.+...+.
T Consensus 480 ~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 480 ASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred CCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 6678899999999999999999999999999999999 999999999988766543
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=526.46 Aligned_cols=494 Identities=28% Similarity=0.406 Sum_probs=416.2
Q ss_pred CHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEee
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 84 (523)
++.++|...++++|+++|+.+.+ +++||+||++++.++|+.|++.|+++||+|+++++|+.++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 79 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHD-RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVP 79 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEe
Confidence 57899999999999999999877 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcc-cccceeeeecCCcc-----cccccccccccccccccCCC
Q 009867 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSE-----LTLSLAHSESDTNAISKLTN 158 (523)
Q Consensus 85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 158 (523)
+++..+.+++.++++.+++++++++......+........ ....+ .+.+.... ....+...............
T Consensus 80 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (515)
T TIGR03098 80 INPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLI-LVGEPAHASEGGGESPSWPKLLALGDADPPHPV 158 (515)
T ss_pred CCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEE-EecCcccccCCccccccHHHhhccccccccCCC
Confidence 9999999999999999999999998776554443322211 11111 11111000 00011111000011111223
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
..+++++++|||||||.||+|.++|.++...+......+++.++|++++.+|++|.+++.. ++.++..|+++++.+ .
T Consensus 159 ~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~--~ 235 (515)
T TIGR03098 159 IDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHD--Y 235 (515)
T ss_pred CcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcC--C
Confidence 4578999999999999999999999999988888878888899999999999999998865 889999999999886 5
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~ 317 (523)
.++..+++.++++++|++.++|+++..+.+..... ..++++|.++++|+++++.+.+.+++.+ +..+++.||+||++
T Consensus 236 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~ 313 (515)
T TIGR03098 236 LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE--SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAF 313 (515)
T ss_pred CCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC--CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecccccc
Confidence 68999999999999999999999999987653221 2467899999999999999999999988 78899999999987
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-----------
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----------- 385 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------- 385 (523)
....... .......+++|+| +++.++++|+++.+++.|+.|||+++|+.++.||++++..+...+.
T Consensus 314 ~~~~~~~--~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
T TIGR03098 314 RSTYLPP--EEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHL 391 (515)
T ss_pred ceEeccc--ccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccc
Confidence 6544322 1123456789999 7999999999999999999999999999999999999888776652
Q ss_pred -CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 386 -FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 386 -~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
++||+|||+++++++|.+++.||.+|+++.+|.+++|.+||+++.+++.|.+++|++.+++..++.+.++++...+...
T Consensus 392 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~ 471 (515)
T TIGR03098 392 PELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL 471 (515)
T ss_pred cccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCC
Confidence 2489999999999999999999999999999999999999999999999999999999988888888888887666667
Q ss_pred CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 465 DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 465 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+.++++++++++++++++|..+++++++|+|.+||++|++|++
T Consensus 472 ~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 472 DRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred CHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 8899999999999999999999999999999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-66 Score=531.17 Aligned_cols=505 Identities=29% Similarity=0.422 Sum_probs=417.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++.+|+++|+...+ +.+||.||+++++++|..|.++|+++||+|+++++|+.+++++++||+++|+++
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~~-~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 110 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFYG-HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH 110 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC--ccccc--------------ccccc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD--SELTL--------------SLAHS 146 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~~~~ 146 (523)
+|++|..+.+++.++++.++++++++++...+.+.................... ..... .+.+.
T Consensus 111 v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (567)
T PRK06178 111 VPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDL 190 (567)
T ss_pred eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccH
Confidence 999999999999999999999999999887665554433322221111000000 00000 00000
Q ss_pred ----cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH-HhccCCCceEEEEcChhhHHHHHHHH
Q 009867 147 ----ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVIVLPLFHVHGMLAGL 221 (523)
Q Consensus 147 ----~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~ 221 (523)
..............+++++++|||||||.||+|.++|.++......... ...+.++++++..+|++|..|+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 270 (567)
T PRK06178 191 LPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGL 270 (567)
T ss_pred HHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHH
Confidence 0000011122345789999999999999999999999998876554432 35678899999999999999988778
Q ss_pred HHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEe--ccCCCCHHHHHHH
Q 009867 222 LSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRS--CSASLAPVILSRL 299 (523)
Q Consensus 222 ~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~--~g~~~~~~~~~~~ 299 (523)
+.++..|+++++.+ .+++..++..+++++++.+.++|..+..++...... ...++.++.+.. .++.++++..+.+
T Consensus 271 ~~~l~~G~~~~l~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~ 347 (567)
T PRK06178 271 LFPLFSGATLVLLA--RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFA-EYDLSSLRQVRVVSFVKKLNPDYRQRW 347 (567)
T ss_pred HHHHHcCceEEEeC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCC-CCCcchheeeeeccccccCCHHHHHHH
Confidence 88999999999987 578999999999999999999999998887654322 234567777544 3589999999999
Q ss_pred HHHhCCceec-cccccccccccccCCCCCC----CCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccc
Q 009867 300 EEAFGAPVLE-AYAMTEATHLMSSNPLPED----GPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKG 372 (523)
Q Consensus 300 ~~~~~~~v~~-~yG~tE~~~~~~~~~~~~~----~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g 372 (523)
++.+|..++. .||+||++..+........ ......++|+| +|++++++| +++.+++.|+.|||+++|++++.|
T Consensus 348 ~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~g 427 (567)
T PRK06178 348 RALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKG 427 (567)
T ss_pred HHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccccc
Confidence 9999888775 7999998866544321111 12344678999 799999999 779999999999999999999999
Q ss_pred cCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 009867 373 YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEI 452 (523)
Q Consensus 373 y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 452 (523)
|+++++.+...+.+|||+|||+++++++|.+++.||.+|+++.+|++++|.+||+++.++++|.++++++.+++..++.+
T Consensus 428 Y~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~ 507 (567)
T PRK06178 428 YWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVP 507 (567)
T ss_pred ccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcce
Confidence 99999999888889999999999999999999999999999999999999999999999999999999998888777888
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 453 NCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 453 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++++..++...+.++++++++++++.+++|. +++++++|+|++||++|++|++++.++
T Consensus 508 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 508 VAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred EEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 88888877666788999999999999999996 888999999999999999999988653
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-67 Score=539.88 Aligned_cols=501 Identities=20% Similarity=0.245 Sum_probs=391.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC-Cc---ccccHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEECCC
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS-GK---FDLTYSRIHELVERAASRLVAA---GINAG-----------DVVALTFPN 64 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~-~~---~~~Ty~el~~~~~~~A~~L~~~---g~~~g-----------d~V~i~~~n 64 (523)
..|+.++|.+.++++|+++|++.. ++ +.+||+||.++++++|++|.++ |+++| |+|+|+++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 468999999999999999999863 12 5899999999999999999974 99999 999999999
Q ss_pred CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcc-cccceeeeecCCcc-----
Q 009867 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSE----- 138 (523)
Q Consensus 65 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----- 138 (523)
+++|+++++||+++|++.+|+++.++.+++.++|+++++++++++.+..+.+.......+ +...++ +......
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~-~~~~~~~~~~~~ 218 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLII-LDTLIKSKEINI 218 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEE-ECCCCccccccc
Confidence 999999999999999999999999999999999999999999998766665555443332 222221 1110000
Q ss_pred --------------ccc-----------------------cc--------ccc---c---------------cccccccc
Q 009867 139 --------------LTL-----------------------SL--------AHS---E---------------SDTNAISK 155 (523)
Q Consensus 139 --------------~~~-----------------------~~--------~~~---~---------------~~~~~~~~ 155 (523)
... .+ ... . ........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (746)
T PTZ00342 219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKI 298 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCC
Confidence 000 00 000 0 00000112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh--ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY--KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
....+++++.++|||||||.||||++||+++.+.+....... ...+.++.++.+|++|.+++.. .+.++..|+++++
T Consensus 299 ~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~ 377 (746)
T PTZ00342 299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLGGTINI 377 (746)
T ss_pred CCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEE
Confidence 234679999999999999999999999999998876654321 2335689999999999999876 6678899999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhccc--------CC--------------------------------
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV--------AK-------------------------------- 273 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--------~~-------------------------------- 273 (523)
.+. ++..+++.+++++||+++++|.++.++.+... ..
T Consensus 378 ~~~---~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k 454 (746)
T PTZ00342 378 WSK---DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK 454 (746)
T ss_pred eCC---CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 652 78899999999999999999999999875210 00
Q ss_pred -CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc--CCcEEEEEC-C
Q 009867 274 -PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILD-E 349 (523)
Q Consensus 274 -~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d-~ 349 (523)
.....+++|.+++||+++++++.+.++..+|+++++.||+||+++..+.... .....+++|+| ++++++++| +
T Consensus 455 ir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~---~~~~~gsvG~p~~pg~e~ki~d~~ 531 (746)
T PTZ00342 455 IKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHA---DDNNTESIGGPISPNTKYKVRTWE 531 (746)
T ss_pred HHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccC---CCCCcccccCcCCCcEEEEEeccc
Confidence 0001268999999999999999999999899999999999999876654432 23466889998 689999998 5
Q ss_pred CCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEeccccccee-cCCcccChHHHHH
Q 009867 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELIN-RGGEKISPIEVDA 427 (523)
Q Consensus 350 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~-~~G~~v~~~~ie~ 427 (523)
++.....++.|||+++||+++.|||++|+.|++.| .+|||+|||+|++|++|.+++.||++|+|| .+|++|+|.+||+
T Consensus 532 ~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~ 611 (746)
T PTZ00342 532 TYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNN 611 (746)
T ss_pred ccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHH
Confidence 44444555679999999999999999999999999 489999999999999999999999999999 6899999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeEEEEEeCC----------------CCC-CCH-----------HHHHH----HH--
Q 009867 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE----------------GSN-IDE-----------EEVLR----FC-- 473 (523)
Q Consensus 428 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~----------------~~~-~~~-----------~~l~~----~~-- 473 (523)
++.++|.|.+++|++..... .+++.|++.. +-. .+. ..+++ .+
T Consensus 612 ~l~~~p~V~~~~VvG~~~~~---~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 688 (746)
T PTZ00342 612 LYSQISFINFCVVYGDDSMD---GPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLE 688 (746)
T ss_pred HHhcCCCccEEEEEccCCcc---ccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 99999999999999864332 2666666542 100 000 01122 22
Q ss_pred ---HhcCcCCCCCcEEEEeC-Cc----CCCCCccccHHHHHHHHHHhhh
Q 009867 474 ---KKNVAAFKVPKRVFITN-EL----PKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 474 ---~~~l~~~~~p~~i~~~~-~l----p~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+..|..++.+..+.+++ .+ -+||+.|+.|+.+.+.|...|+
T Consensus 689 ~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 689 VYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred HHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence 23588999999888874 22 3899999999999999995554
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-66 Score=527.72 Aligned_cols=488 Identities=26% Similarity=0.402 Sum_probs=402.3
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGI-NAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
-|+.++|..++ .|+++|+++.+ ..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~-~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGD-RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 48889998765 79999998876 699999999999999999999999 899999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++.++++.++++++....+.... ...+.. ...+... ..... .......+.....+++
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~---i~~~~~~--~~~~~--~~~~~~~~~~~~~~~~ 151 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD-LPGVRV---LDVDTPA--YAELV--AAAGALTPHREVDAMD 151 (540)
T ss_pred EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc-ccCceE---EEccchh--hhhhh--ccccCcCCCCCCCCCC
Confidence 99999999999999999999999999876654433221 001111 1111100 00000 0000011112346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|.++..........+++.++|+++..+|++|.+++...++.++..|+++++++ .+++.
T Consensus 152 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~--~~~~~ 229 (540)
T PRK13388 152 PFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPA--KFSAS 229 (540)
T ss_pred eEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECC--CCCHH
Confidence 9999999999999999999999999888888888899999999999999999988876777899999999876 56889
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 322 (523)
.+++.++++++|++..+|..+..++....... .....++. . .|+.+.+.....+.+.+++++++.||+||++.++..
T Consensus 230 ~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~-~~~~~l~~-~-~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~ 306 (540)
T PRK13388 230 GFLDDVRRYGATYFNYVGKPLAYILATPERPD-DADNPLRV-A-FGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVR 306 (540)
T ss_pred HHHHHHHHhCCeEEEehHHHHHHHHhCCCCcc-ccccceEE-E-ECCCCCHHHHHHHHHHhCCceecccccccccceeec
Confidence 99999999999999999999998886543221 12234553 3 366778888899988899999999999999876654
Q ss_pred CCCCCCCCCCCCCcccc-CCcEE-----------EEECCCCCcc-CCCceeEEEEe-CCCcccccCCChhhhhhhccCCe
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEI-----------AILDEIGVPQ-EGGAKGEVCIR-GPNVTKGYKNNPEANKSAFLFGW 388 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~-----------~i~d~~~~~~-~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~ 388 (523)
.. ....+++|+| +++.+ .++|++|+++ +.++.|||+++ |++++.||++++..+.+.+.+||
T Consensus 307 ~~-----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~ 381 (540)
T PRK13388 307 EP-----GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGM 381 (540)
T ss_pred CC-----CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCc
Confidence 32 1245678888 56543 2455666655 35679999998 99999999999999999998999
Q ss_pred eeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEE 468 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 468 (523)
|+|||+++++++|.+++.||.+|+||.+|++++|.+||+++.++++|.+++|++.+++..++.+++++++.++...+.++
T Consensus 382 ~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~ 461 (540)
T PRK13388 382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDA 461 (540)
T ss_pred eeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999888788888888888777778889
Q ss_pred HHHHHHhc--CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 469 VLRFCKKN--VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 469 l~~~~~~~--l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++++++.+ |+.+++|..+++++++|+|++||++|++|+++..+.
T Consensus 462 l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 462 FAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred HHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 99999864 999999999999999999999999999999876543
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=526.81 Aligned_cols=499 Identities=26% Similarity=0.411 Sum_probs=413.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|..+++ |+++|+++.+ +++||+||+++++++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~ 100 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICGE-RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP 100 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence 4689999999887 9999999876 699999999999999999999999999999999999999999999999999988
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcccccceeeeecCCcccccccccc-cccccccccC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKL 156 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (523)
+++.+.....++.++++.++++.++++..... ....+........... ........ .+... ..........
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 177 (536)
T PRK10946 101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVL-LLNDDGEH--SLDDAINHPAEDFTAT 177 (536)
T ss_pred ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEE-EecCCCCc--cHHHHhhCcccccccC
Confidence 88777778888999999999999998865321 1111111111111111 11100000 00000 0001111122
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeCC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA 235 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~~ 235 (523)
...++++++++|||||||.||+|.++|+++...+......+++.+++++++.+|++|.+++.. +++.++..|+++++.+
T Consensus 178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~ 257 (536)
T PRK10946 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP 257 (536)
T ss_pred CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence 346789999999999999999999999999999888888889999999999999999888654 5788899999999876
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
..++..+++.+++++++++.++|.++..+++.... .....+++++.+++||+.+++++.+.+.+.+|+++++.||+|
T Consensus 258 --~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~t 335 (536)
T PRK10946 258 --DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMA 335 (536)
T ss_pred --CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeeccc
Confidence 56788899999999999999999999999876322 122346799999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeee
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT 391 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~T 391 (523)
|+....... .........++|+| ++..++++|+++++++.|+.|||+++|+.++.||+++++.+.+.| .++||+|
T Consensus 336 E~~~~~~~~--~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~T 413 (536)
T PRK10946 336 EGLVNYTRL--DDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCS 413 (536)
T ss_pred ccceeeecC--CCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceec
Confidence 965433222 11122345678888 578999999999999999999999999999999999999998888 5899999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||++++|++|.+++.||.+|+++.+|++++|.+||+.|.++++|.++++++.++...++.+.++++..++ .+.+++++
T Consensus 414 GDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~~l~~ 491 (536)
T PRK10946 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAVQLRR 491 (536)
T ss_pred CceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988878888888887654 67889999
Q ss_pred HHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 472 FCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 472 ~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
++++. ++.|++|..+.+++++|+|++||++|+.|++++.+..
T Consensus 492 ~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 492 FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred HHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 99886 9999999999999999999999999999999877654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=528.05 Aligned_cols=499 Identities=27% Similarity=0.472 Sum_probs=408.9
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.|+.++|.++++++|+++|+...+ +.+||.||.++++++|..|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~-~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLG-VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 589999999999999999998766 6999999999999999999985 99999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-ecCC-------------------cc----
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDAD-------------------SE---- 138 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------~~---- 138 (523)
+|+++.++.+++.++++.++++.+++++...................... .+.. ..
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLP 182 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCc
Confidence 99999999999999999999999999876554443332221111000000 0000 00
Q ss_pred ccccccccccc--ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc---------cCC-CceEE
Q 009867 139 LTLSLAHSESD--TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---------LTE-SDSTV 206 (523)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~-~~~~~ 206 (523)
....+...... ...........+++++++|||||||.||+|.++|+++..........+. +.. .++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (562)
T PRK12492 183 QAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMI 262 (562)
T ss_pred ccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEE
Confidence 00000000000 0001112345689999999999999999999999999877665544432 222 35678
Q ss_pred EEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEe
Q 009867 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRS 286 (523)
Q Consensus 207 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~ 286 (523)
..+|++|.+++...++..+..|...++... ..++..+++.++++++|++.++|+++..+.+...... .+++++|.+++
T Consensus 263 ~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~ 340 (562)
T PRK12492 263 APLPLYHIYAFTANCMCMMVSGNHNVLITN-PRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKD-LDFSALKLTNS 340 (562)
T ss_pred EecchHHHHHHHHHHHHHhhcCceEEEecC-CcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccc-ccccceeEEEe
Confidence 899999999988777777888887666543 3578899999999999999999999999987654332 45689999999
Q ss_pred ccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEe
Q 009867 287 CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIR 365 (523)
Q Consensus 287 ~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~ 365 (523)
+|+.+++++.+.+.+.+++++++.||+||++.++..+... .....+++|+| +++.++++|+++.+++.|+.|||+|+
T Consensus 341 gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~ 418 (562)
T PRK12492 341 GGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYG--ELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIK 418 (562)
T ss_pred ccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCc--ccccCCccceecCCCEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999999998999999999999998776654321 12344678998 78999999999999999999999999
Q ss_pred CCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeec
Q 009867 366 GPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP 444 (523)
Q Consensus 366 ~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~ 444 (523)
|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+++++.+|++++|.+||+.+.+++.|.++++++.+
T Consensus 419 g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~ 498 (562)
T PRK12492 419 GPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVP 498 (562)
T ss_pred CCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEecc
Confidence 9999999999999888887 478999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 445 DDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 445 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+...++.+.++++..++ ..+.++++++++++++.+++|..+.+++++|+|++||++|++|++.
T Consensus 499 ~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 499 DERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred CCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 88778888888776543 3567899999999999999999999999999999999999999864
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-66 Score=529.75 Aligned_cols=503 Identities=33% Similarity=0.493 Sum_probs=413.9
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+++.++|...++++|+++|+++.+ +.+||+||++++.++|.+|.+.|+++||+|+++++|+.++++++|||+++|++++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~-~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLG-KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVV 102 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecC-eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEe
Confidence 578999999999999999999877 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecC----Ccc------------ccc------
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA----DSE------------LTL------ 141 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~------ 141 (523)
|++|..+.+++.++++.++++++++++......................... ... ...
T Consensus 103 pi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (563)
T PRK06710 103 QTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESE 182 (563)
T ss_pred ccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccc
Confidence 9999999999999999999999999886554433222111111111000000 000 000
Q ss_pred ---cccccccccccc-ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH-HHhccCC-CceEEEEcChhhHH
Q 009867 142 ---SLAHSESDTNAI-SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-SVYKLTE-SDSTVIVLPLFHVH 215 (523)
Q Consensus 142 ---~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~-~~~~~~~~p~~~~~ 215 (523)
.+.......... .......+++++++|||||||.||+|.++|+++........ ..+.... ++++++..|++|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 262 (563)
T PRK06710 183 TIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262 (563)
T ss_pred hhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHH
Confidence 000000000000 01112357899999999999999999999999875543322 2233333 45778999999999
Q ss_pred HHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHH
Q 009867 216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295 (523)
Q Consensus 216 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~ 295 (523)
++...++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+.+...... ..++++|.++++|+.+++++
T Consensus 263 g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~v~~gg~~~~~~~ 339 (563)
T PRK06710 263 GMTAVMNLSIMQGYKMVLIP--KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKE-YDISSIRACISGSAPLPVEV 339 (563)
T ss_pred HHHHHHHHHHHcCCeEEEcC--CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcccc-CChhhhhheeeCCCcCCHHH
Confidence 98776778899999999876 5688999999999999999999999999887543322 34578999999999999999
Q ss_pred HHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCccccc
Q 009867 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGY 373 (523)
Q Consensus 296 ~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy 373 (523)
.+++.+.++.++++.||+||++......... .....+++|+| ++..++++| +++.+++.|+.|||+++|+.++.||
T Consensus 340 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY 417 (563)
T PRK06710 340 QEKFETVTGGKLVEGYGLTESSPVTHSNFLW--EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGY 417 (563)
T ss_pred HHHHHHhhCCCEecccccccCccccccCccc--ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhh
Confidence 9999999999999999999998765443211 12234578888 688899998 7889999999999999999999999
Q ss_pred CCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeE
Q 009867 374 KNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN 453 (523)
Q Consensus 374 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~ 453 (523)
+++++.+...+.+|||+|||+++++++|.+++.||.+|+++.+|.+++|.+||+++.++++|.+++|++.++...++.+.
T Consensus 418 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 497 (563)
T PRK06710 418 WNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVK 497 (563)
T ss_pred hCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999998888788888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 454 CAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 454 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++++..++...+.++++++++++++.+++|..+.+++++|+|++||++|+.|++++..+
T Consensus 498 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 498 AFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhc
Confidence 88888877777889999999999999999999999999999999999999999887753
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=583.98 Aligned_cols=487 Identities=23% Similarity=0.350 Sum_probs=411.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+++.+ ..+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~~-~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~ 535 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADAR-YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW 535 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcCC-CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++.+++++++++......+... ......... .........+.....+++
T Consensus 536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 599 (1296)
T PRK10252 536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV------PDLTSLCYN----------APLAPQGAAPLQLSQPHH 599 (1296)
T ss_pred EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC------CCceeeecc----------cccccccCCCCCCCCCCC
Confidence 9999999999999999999999999987654322110 000000000 000000011112235789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~~ 241 (523)
+++++|||||||.||+|.++|+++.+.+.+....+++.++|+++...|+++..+... ++.++..|+++++.+.. ..++
T Consensus 600 ~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~ 678 (1296)
T PRK10252 600 TAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEAHRDP 678 (1296)
T ss_pred eEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhccCCH
Confidence 999999999999999999999999999999999999999999999999988877654 88899999999986532 3588
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|+++..+++...... ...++++|.+++||+.+++++.+.+.+.+++++++.||+||++..+
T Consensus 679 ~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 758 (1296)
T PRK10252 679 LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDV 758 (1296)
T ss_pred HHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhhee
Confidence 899999999999999999999999887643322 1235789999999999999999999988899999999999998766
Q ss_pred ccCCCCCCC----CCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------CCe
Q 009867 321 SSNPLPEDG----PHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGW 388 (523)
Q Consensus 321 ~~~~~~~~~----~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~~ 388 (523)
+........ .....++|+| ++..++|+|+.+++++.|+.|||+++|++++.||+++++.++..|. .+|
T Consensus 759 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~ 838 (1296)
T PRK10252 759 SWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERM 838 (1296)
T ss_pred eeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEE
Confidence 654432221 2234578998 7899999999999999999999999999999999999999998883 239
Q ss_pred eeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeec----CC--CCCceeEEEEEeCCCC
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP----DD--KYGEEINCAIIPREGS 462 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~----~~--~~~~~~~~~v~~~~~~ 462 (523)
|+|||+|+++++|.++++||.|++||++|++|++.+||.+|.++|+|.+++|+... .. .....++++++...+.
T Consensus 839 y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~ 918 (1296)
T PRK10252 839 YRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL 918 (1296)
T ss_pred EecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999776542 11 1123688888877666
Q ss_pred CCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 463 NIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 463 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
..+.++++++++++|+.|++|..++.++++|+|++||++|++|.+
T Consensus 919 ~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~ 963 (1296)
T PRK10252 919 PLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL 963 (1296)
T ss_pred CCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence 667899999999999999999999999999999999999998865
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-66 Score=533.55 Aligned_cols=498 Identities=26% Similarity=0.350 Sum_probs=400.9
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+..|+.++|.+.++++|+++|+++.+ +.+||+||+++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~~-~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~ 113 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFED-QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAV 113 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeCC-CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence 45789999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC---ccccccccccc---cccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD---SELTLSLAHSE---SDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~ 155 (523)
++++++.++.+++.++++.+++++++++.+....+.................... ........... ........
T Consensus 114 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (600)
T PRK08279 114 VALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR 193 (600)
T ss_pred EeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccCCCcc
Confidence 9999999999999999999999999999877665554433322211111111100 00000000000 00001111
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
.....+++++++|||||||.||+|.++|.++...+..+...+++.++++++..+|++|.+++...++.++..|+++++.+
T Consensus 194 ~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 273 (600)
T PRK08279 194 SGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRR 273 (600)
T ss_pred cCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcC
Confidence 23456899999999999999999999999999999888888899999999999999999999888888899999999977
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC-ceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~t 314 (523)
.+++..+++.++++++|++.++|++++.+........ ....+++. ++|+.+++.+.+.+.+.++. .+++.||+|
T Consensus 274 --~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~-~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~t 348 (600)
T PRK08279 274 --KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT-DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAAS 348 (600)
T ss_pred --CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc-ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeeccc
Confidence 6788999999999999999999999999887644332 22345654 45788999999999999976 499999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-C----CcEE---------EEECCCC--CccCCCceeEEE--EeCCCcccccCCC
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-V----GQEI---------AILDEIG--VPQEGGAKGEVC--IRGPNVTKGYKNN 376 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~----~~~~---------~i~d~~~--~~~~~g~~Gel~--v~~~~~~~gy~~~ 376 (523)
|++..+... ....+++|.+ . +..+ .+.+.++ .+++.|+.||++ +.++.++.|| ++
T Consensus 349 E~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~ 421 (600)
T PRK08279 349 EGNVGFINV------FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TD 421 (600)
T ss_pred ccceeeccc------CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CC
Confidence 987543321 1233455554 2 1222 2233223 356789999998 6789999999 77
Q ss_pred hhhhhhhc-------cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCC-
Q 009867 377 PEANKSAF-------LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY- 448 (523)
Q Consensus 377 ~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~- 448 (523)
+..+...+ .++||+|||+|+++++|.+++.||.+|+||++|++|+|.+||+++.++|+|.+++|++++.+..
T Consensus 422 ~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~ 501 (600)
T PRK08279 422 PEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTD 501 (600)
T ss_pred chhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCC
Confidence 87777665 2479999999999999999999999999999999999999999999999999999999876643
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 449 GEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 449 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+....++++..++...+.++++++++++|+.|++|..+++++++|+|++||++|+.|++++.+.
T Consensus 502 ~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 502 GRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred CccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 3445566666555567789999999999999999999999999999999999999999887766
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=526.70 Aligned_cols=500 Identities=29% Similarity=0.481 Sum_probs=409.9
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|...++++|+++|+++.+ ..+||.||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~-~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 100 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMG-KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV 100 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcC-ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence 3589999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc-------------------c----c
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-------------------E----L 139 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~----~ 139 (523)
+|++|..+.+++.++++.++++++++++.....+..................... . .
T Consensus 101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (557)
T PRK07059 101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG 180 (557)
T ss_pred eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence 9999999999999999999999999987665444433222222111110000000 0 0
Q ss_pred ccccccc--cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc----cC---CCceEEEEcC
Q 009867 140 TLSLAHS--ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK----LT---ESDSTVIVLP 210 (523)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~~~~~p 210 (523)
...+... .............++++++++|||||||.||+|.++|.++...+......+. .. ....++..+|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 260 (557)
T PRK07059 181 HVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALP 260 (557)
T ss_pred cccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCC
Confidence 0000000 0000111123346789999999999999999999999999876544332221 11 2346778899
Q ss_pred hhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCC
Q 009867 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290 (523)
Q Consensus 211 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~ 290 (523)
++|.+++....+.++..|++.++.+. ..++..+++.++++++|.+..+|+++..+........ ..+++++.++.||+.
T Consensus 261 l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~-~~~~~l~~~~~gg~~ 338 (557)
T PRK07059 261 LYHIFALTVCGLLGMRTGGRNILIPN-PRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDK-LDFSKLIVANGGGMA 338 (557)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEecC-CcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCc-CCchhheEEEecccc
Confidence 99999887767778888887666543 3578899999999999999999999999987654332 346789999999999
Q ss_pred CCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCc
Q 009867 291 LAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNV 369 (523)
Q Consensus 291 ~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~ 369 (523)
+++.+.+.+.+.+++++++.||+||++.++..+.. .......++|+| ++..++++|+++.+++.|+.|||+++|+++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~ 416 (557)
T PRK07059 339 VQRPVAERWLEMTGCPITEGYGLSETSPVATCNPV--DATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQV 416 (557)
T ss_pred CCHHHHHHHHHHhCCCeeeccccccccchhhcCCC--CCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCcc
Confidence 99999999999999999999999999887665432 122345689999 789999999999999999999999999999
Q ss_pred ccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCC
Q 009867 370 TKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448 (523)
Q Consensus 370 ~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 448 (523)
+.||+++++.+...+ .+|||+|||+++++++|.+++.||.+++++.+|++++|.+||+++.++++|.+++|++.++...
T Consensus 417 ~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ 496 (557)
T PRK07059 417 MAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHS 496 (557)
T ss_pred chhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCC
Confidence 999999999888777 5799999999999999999999999999999999999999999999999999999999988887
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 449 GEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 449 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
++.+.++++..+ ...+.++++++++++++.+++|..+.+++++|+|++||++|+.|+++
T Consensus 497 ge~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 497 GEAVKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred CeeEEEEEEeCC-CCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 887887777654 34667889999999999999999999999999999999999998865
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=526.83 Aligned_cols=507 Identities=22% Similarity=0.336 Sum_probs=411.2
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC--cccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG--KFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
..+|+.++|.+.+..+|+++|+.+.+ .+.+||+||.+++.++|.+|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998643 2689999999999999999997 79999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc-cc---------cccccccc
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE-LT---------LSLAHSES 148 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~ 148 (523)
|+++++++|.++.+++.++++.++++.+++++.....+.............+........ .. ..+.....
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD 167 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence 999999999999999999999999999999987666555544333221111111110000 00 00000000
Q ss_pred c-ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHH--HHHhccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 149 D-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI--KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
. ..........++++++++|||||||.||+|.++|.++....... ...+++.+++++++.+|++|.+++.. .+.++
T Consensus 168 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l 246 (576)
T PRK05620 168 GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV-PLAAF 246 (576)
T ss_pred cCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH-HHHHH
Confidence 0 01111123456899999999999999999999999986554432 33567889999999999999999865 67889
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..|+++++... .+++..+++.+++++++.++++|+++..++....... ....++|.++++|+.+++++.+.+.+.+|+
T Consensus 247 ~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~ 324 (576)
T PRK05620 247 MSGTPLVFPGP-DLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-PERMSLQEIYVGGSAVPPILIKAWEERYGV 324 (576)
T ss_pred hcCceEEecCC-CCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-cccCceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 99999988754 5689999999999999999999999998876543222 223579999999999999999999999999
Q ss_pred ceeccccccccccccccCCCCCCC-----CCCCCCcccc-CCcEEEEECCCCCccC--CCceeEEEEeCCCcccccCCCh
Q 009867 306 PVLEAYAMTEATHLMSSNPLPEDG-----PHKPGSVGRP-VGQEIAILDEIGVPQE--GGAKGEVCIRGPNVTKGYKNNP 377 (523)
Q Consensus 306 ~v~~~yG~tE~~~~~~~~~~~~~~-----~~~~~~~g~~-~~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~ 377 (523)
++++.||+||++..+......... .....++|++ ++.+++++|+ +..++ .++.|||+++|++++.||++++
T Consensus 325 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~ 403 (576)
T PRK05620 325 DVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSP 403 (576)
T ss_pred ceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCceEEEEEcCcccccccCCc
Confidence 999999999998765543321100 0112357777 6889999997 76664 4788999999999999999998
Q ss_pred hhh----hhh------------c-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEE
Q 009867 378 EAN----KSA------------F-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440 (523)
Q Consensus 378 ~~~----~~~------------~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 440 (523)
+.+ ... + .+|||+|||+++++.+|.+++.||.+|+++.+|.++++.+||++|.++|.|.+++|
T Consensus 404 ~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~v 483 (576)
T PRK05620 404 TEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAV 483 (576)
T ss_pred cccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEE
Confidence 876 222 2 46899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 441 FGVPDDKYGEEINCAIIPREGSN---IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 441 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++.++...++.+.++++..++.. ...++++++++++|+.+++|..+++++++|+|.+||++|+.|++++.+.
T Consensus 484 v~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 484 IGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred EeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence 99998887888888888776543 3468899999999999999999999999999999999999999999863
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=584.21 Aligned_cols=504 Identities=21% Similarity=0.298 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC--------CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS--------GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~--------~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
.++.++|.++|+++|+++|++.. +.+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 47899999999999999999852 2368999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch---hHHHHHHhh-ccc--ccceeeeecCCcc--cccccc--c
Q 009867 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---AAAQAAASK-LNI--SHATATLLDADSE--LTLSLA--H 145 (523)
Q Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~-~~~--~~~~~~~~~~~~~--~~~~~~--~ 145 (523)
+++|++++|++|.++.+++.++++.++++++++..... ..+...... ... ............. ...... .
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETD 395 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccccccc
Confidence 99999999999999999999999999999999876431 111111100 000 0000001000000 000000 0
Q ss_pred cccc----ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHH
Q 009867 146 SESD----TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL 221 (523)
Q Consensus 146 ~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 221 (523)
.... ..........++++++++|||||||.||||+++|+++.+.+.+....+++.++++++...|++|..++.. +
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~-i 474 (1389)
T TIGR03443 396 VLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRD-M 474 (1389)
T ss_pred ccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHH-H
Confidence 0000 0001112245789999999999999999999999999999888888889999999999999988776654 8
Q ss_pred HHhhhcCcEEEeCCCCC-CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHH
Q 009867 222 LSSFAAGAAVTLPAAGR-FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300 (523)
Q Consensus 222 ~~~l~~g~~~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~ 300 (523)
+.++..|+++++++... .++..+++.++++++|++.++|++++.+..... ..++++|.++++|+.+++...+.+.
T Consensus 475 ~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~ 550 (1389)
T TIGR03443 475 FTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT----TPIPSLHHAFFVGDILTKRDCLRLQ 550 (1389)
T ss_pred HHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc----ccCCCccEEEEecccCCHHHHHHHH
Confidence 89999999999976433 367889999999999999999999998875421 2468999999999999999999988
Q ss_pred HHh-CCceeccccccccccccccCCCCCCC--------CCCCCCcccc-CCcEEEEECCC--CCccCCCceeEEEEeCCC
Q 009867 301 EAF-GAPVLEAYAMTEATHLMSSNPLPEDG--------PHKPGSVGRP-VGQEIAILDEI--GVPQEGGAKGEVCIRGPN 368 (523)
Q Consensus 301 ~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~g~~-~~~~~~i~d~~--~~~~~~g~~Gel~v~~~~ 368 (523)
+.+ ++++++.||+||++..++........ .....++|+| ++++++++|++ +.+++.|+.|||+|+|++
T Consensus 551 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~ 630 (1389)
T TIGR03443 551 TLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGG 630 (1389)
T ss_pred HhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccc
Confidence 765 78899999999998766543221110 0123467888 68899999944 578999999999999999
Q ss_pred cccccCCChhhhhhhcc-----------------------------CCeeeeCceeeEcCCCcEEEecccccceecCCcc
Q 009867 369 VTKGYKNNPEANKSAFL-----------------------------FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419 (523)
Q Consensus 369 ~~~gy~~~~~~~~~~~~-----------------------------~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~ 419 (523)
++.||+++|+.+++.|. ++||+|||+|++++||.++|.||.||+||++|++
T Consensus 631 v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~r 710 (1389)
T TIGR03443 631 LAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFR 710 (1389)
T ss_pred cchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEE
Confidence 99999999999988872 4799999999999999999999999999999999
Q ss_pred cChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC-C-------------------------CCHHHHHHHH
Q 009867 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS-N-------------------------IDEEEVLRFC 473 (523)
Q Consensus 420 v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~-------------------------~~~~~l~~~~ 473 (523)
|+|.+||.+|.++|.|.+++|+...+...+..+++++++..+. . ...+++++++
T Consensus 711 I~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 790 (1389)
T TIGR03443 711 IELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYL 790 (1389)
T ss_pred ecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999998887777777888888865221 0 0135789999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++|+.|++|..++++++||+|++||++|++|...+.++
T Consensus 791 ~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~ 829 (1389)
T TIGR03443 791 KKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQ 829 (1389)
T ss_pred HhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhh
Confidence 999999999999999999999999999999997544333
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=623.08 Aligned_cols=488 Identities=21% Similarity=0.350 Sum_probs=417.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+++.+ +++||+||+++++++|+.|.++|+++|++|+++++|++++++++|||+++|+++
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVFGD-QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEeeCC-cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence 3689999999999999999999987 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++.+++++++++......+... .... .. ..+... ........+.....+++
T Consensus 3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~---~~~~--~~-~~~~~~--------~~~~~~~~~~~~~~~~~ 3238 (3956)
T PRK12467 3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP---AGDT--AL-TLDRLD--------LNGYSENNPSTRVMGEN 3238 (3956)
T ss_pred ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc---cCCc--ee-eecchh--------hcccCCCCCcccCCCCc
Confidence 9999999999999999999999999987643322110 0000 00 001000 00011111223356789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||||+++|+++.+.+......++++++|+++.+.|+.|..+.. .++.++..|+++++++....++.
T Consensus 3239 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~i~~~~~~~~~ 3317 (3956)
T PRK12467 3239 LAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQE-RFLWTLICGGCLVVRDNDLWDPE 3317 (3956)
T ss_pred eEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHH-HHHHHHhCCCEEEECCcccCCHH
Confidence 99999999999999999999999999999999999999999999999998887754 48999999999999884457899
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+++.... ..++++|.+++|||.++++..+.+.+.+ ++.+++.||+||++..++
T Consensus 3318 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467 3318 ELWQAIHAHRISIACFPPAYLQQFAEDAGG---ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHhcccc---cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence 999999999999999999999999765322 2467899999999999999999998887 678999999999987766
Q ss_pred cCCCCCCC--CCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-C-------Ceee
Q 009867 322 SNPLPEDG--PHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-F-------GWFH 390 (523)
Q Consensus 322 ~~~~~~~~--~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~-------~~~~ 390 (523)
......+. .....++|+| +|++++++|+.+++++.|+.|||+|+|+++++||+++++.|++.|. + +||+
T Consensus 3395 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yr 3474 (3956)
T PRK12467 3395 LWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYR 3474 (3956)
T ss_pred EEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeec
Confidence 54332211 2233679999 7999999999999999999999999999999999999999999983 2 3799
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.++++||+|++||++|++|+|.|||++|.++|+|.+++|+.... ..++.++++++...+.....+.++
T Consensus 3475 TGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~~~~l~ 3553 (3956)
T PRK12467 3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDWRETLR 3553 (3956)
T ss_pred cchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754 346788888888766556778999
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
++++++|+.|++|..++++++||+|++||++|++|.+...
T Consensus 3554 ~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 3593 (3956)
T PRK12467 3554 DHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDA 3593 (3956)
T ss_pred HHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCc
Confidence 9999999999999999999999999999999999876543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-66 Score=574.69 Aligned_cols=504 Identities=25% Similarity=0.338 Sum_probs=417.9
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.+.+.+.++++|+++|+++.+++++||+||+++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+++
T Consensus 614 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~ 692 (1146)
T PRK08633 614 LPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP 692 (1146)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence 46899999999999999999987544799999999999999999987 58999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHh--hcccccceeeeecCCcccc--cccc---ccc-cccc---
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS--KLNISHATATLLDADSELT--LSLA---HSE-SDTN--- 151 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~---~~~-~~~~--- 151 (523)
+|+++..+.+++.+++++++++.+++++.....+..... ............+...... ..+. ... .+..
T Consensus 693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1146)
T PRK08633 693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLK 772 (1146)
T ss_pred EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHHHH
Confidence 999999999999999999999999998765444321100 0110001111111000000 0000 000 0000
Q ss_pred ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEE
Q 009867 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231 (523)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 231 (523)
........++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|..++...++.++..|+++
T Consensus 773 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~ 852 (1146)
T PRK08633 773 RLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKV 852 (1146)
T ss_pred hhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEE
Confidence 00012346789999999999999999999999999998888888888999999999999999999988788999999998
Q ss_pred EeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccc
Q 009867 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311 (523)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~y 311 (523)
++.+. ..++..+++.++++++|++.++|++++.+.+...... .+++++|.+++||+++++++.+.+++.+|+++++.|
T Consensus 853 v~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~Y 930 (1146)
T PRK08633 853 VYHPD-PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP-LMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGY 930 (1146)
T ss_pred EEeCC-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCc-ccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccc
Confidence 88653 5688999999999999999999999999987543332 457899999999999999999999999999999999
Q ss_pred cccccccccccCCCCC-------CCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 312 AMTEATHLMSSNPLPE-------DGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 312 G~tE~~~~~~~~~~~~-------~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
|+||++++++...... ......+++|+| ++.+++++| +++++++.|+.|||+++|++++.||+++++.+.+
T Consensus 931 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~ 1010 (1146)
T PRK08633 931 GATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAE 1010 (1146)
T ss_pred ccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHH
Confidence 9999987765442211 012345789999 799999999 6789999999999999999999999999999998
Q ss_pred hccC----CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCC--CceeeEEEeecCCCCCceeEEEE
Q 009867 383 AFLF----GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP--DIAQAVAFGVPDDKYGEEINCAI 456 (523)
Q Consensus 383 ~~~~----~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v 456 (523)
.+.+ |||+|||++++|+||.+++.||.+|++|++|++++|.+||+++.+++ .+.+++|++.+++..++.+.+++
T Consensus 1011 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v 1090 (1146)
T PRK08633 1011 VIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLH 1090 (1146)
T ss_pred HhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEE
Confidence 8877 89999999999999999999999999999999999999999999998 46689999999998888888888
Q ss_pred EeCCCCCCCHHHHHHHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 457 IPREGSNIDEEEVLRFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+.. ..+.+++++++++ ++++|++|..+++++++|+|++||++|+.|+++..+.
T Consensus 1091 ~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1091 TCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred ecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 762 3467889988875 6999999999999999999999999999999876554
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=521.16 Aligned_cols=478 Identities=25% Similarity=0.416 Sum_probs=401.9
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.+.|..+++++|+++|+.+.+ ..+||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 34 ~~~~~~~~~~~a~~~p~~~a~~~~~-~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 34 GTNPYTLLAVTAARWPGRTAIIDDD-GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred CCcHHHHHHHHHHHCCCCcEEEeCC-CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 5789999999999999999999876 589999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|+++.++.+++.++++.++++.+++++.....+..... . ...+ +... ... .... ......++
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~-~~~~-~~~~---~~~----~~~~---~~p~~~~~ 175 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD-----A-VAVI-DPAT---AGA----EESG---GRPAVAAP 175 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc-----c-eEEe-ccch---hhh----hcCC---CCCCCCCC
Confidence 999999999999999999999999998765543332111 0 0001 1000 000 0000 01112356
Q ss_pred eEEEEEeeCCCCCCcceeechHHHH--HHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLA--ASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
.++++|||||||.||+|.++|.... .........+++.++++++..+|++|.+|+.. ++.++..|++++... .++
T Consensus 176 ~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~--~~~ 252 (516)
T PRK13383 176 GRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHR--HFD 252 (516)
T ss_pred CcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECC--CCC
Confidence 6789999999999999999987432 11222334567888999999999999999865 777889999998876 678
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
+..+++.++++++|.+.++|+++..+.+..... ....++++|.++++|+++++++.+++.+.|+..+++.||+||++..
T Consensus 253 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~ 332 (516)
T PRK13383 253 AEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIG 332 (516)
T ss_pred HHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccc
Confidence 999999999999999999999999998764321 1124678999999999999999999999999999999999999866
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
+..+.. ......+++|+| ++..++++|+++.+++.|+.|||+++|+.++.||++.+. ..+.+|||+|||+++++
T Consensus 333 ~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d 407 (516)
T PRK13383 333 ALATPA--DLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLD 407 (516)
T ss_pred eecccc--ccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEc
Confidence 554431 122345678998 789999999999999999999999999999999998653 34568999999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCc
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA 478 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 478 (523)
++|.+++.||.+|++|.+|.+++|.+||++|.++++|.++++++.++...++.+.++++..++...+.++++++++++++
T Consensus 408 ~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~ 487 (516)
T PRK13383 408 NAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVS 487 (516)
T ss_pred CCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999988888888888998877666677899999999999
Q ss_pred CCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 479 AFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 479 ~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
.+++|..+.+++++|+|++||++|+.|+
T Consensus 488 ~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 488 RFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred cCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 9999999999999999999999999863
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-66 Score=537.65 Aligned_cols=506 Identities=26% Similarity=0.353 Sum_probs=388.9
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC-----------Cc-----------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS-----------GK-----------FDLTYSRIHELVERAASRLVAAGINAGDVVALT 61 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~ 61 (523)
.|+.++|.+.++++|+++|+... ++ ..+||+||.++++++|++|.++|+++||+|+|+
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 58999999999999999999531 11 238999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcc-cccceeeeecCCccc-
Q 009867 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSEL- 139 (523)
Q Consensus 62 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 139 (523)
++|+++|+++++||+++|++++|+++.++.+++.++|++++++++|++.+....+........ +...+ .+.+.....
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii-~~~~~~~~~~ 216 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVI-YMDDEGVDSD 216 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEE-EECCCCchhh
Confidence 999999999999999999999999999999999999999999999998776665555443332 22211 121111000
Q ss_pred ----------ccccccc--cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh-ccCCCceEE
Q 009867 140 ----------TLSLAHS--ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-KLTESDSTV 206 (523)
Q Consensus 140 ----------~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~ 206 (523)
...+.+. .............++++++++|||||||.||||+++|+++...+......+ ++.++|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l 296 (696)
T PLN02387 217 SSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYL 296 (696)
T ss_pred hhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 0000000 000011112234679999999999999999999999999998887765543 578899999
Q ss_pred EEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC------ChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-------
Q 009867 207 IVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF------SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------- 273 (523)
Q Consensus 207 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~------~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------- 273 (523)
+.+|++|.+++.. .+..+..|+++.+.....+ -...++..+++++||++.++|.++.++.+.....
T Consensus 297 ~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~ 375 (696)
T PLN02387 297 AYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGL 375 (696)
T ss_pred EECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHH
Confidence 9999999999876 3345666776665432111 1234567899999999999999999886532100
Q ss_pred ------------------------C-C--------------CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 274 ------------------------P-E--------------PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 274 ------------------------~-~--------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
. . ....++|.+++||+++++++.+.+...+|+++++.||+|
T Consensus 376 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~T 455 (696)
T PLN02387 376 AKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455 (696)
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechh
Confidence 0 0 001589999999999999999888888899999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCC-cc--CCCceeEEEEeCCCcccccCCChhhhhhhcc---C
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGV-PQ--EGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---F 386 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~-~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~ 386 (523)
|+++.++.+.. .....+++|+| ++++++++| +++. .+ ..++.|||+|+||+++.|||++++.|++.|. +
T Consensus 456 Et~~~~~~~~~---~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~ 532 (696)
T PLN02387 456 ETCAGATFSEW---DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDER 532 (696)
T ss_pred hcccceeecCc---ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccC
Confidence 99876665432 12346789999 799999998 4442 22 2345799999999999999999999999883 3
Q ss_pred C--eeeeCceeeEcCCCcEEEecccccceec-CCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC-
Q 009867 387 G--WFHTGDIGYFDSDGYLHLVGRIKELINR-GGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS- 462 (523)
Q Consensus 387 ~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~- 462 (523)
| ||+|||+|++|+||++++.||++|+||. +|++|+|.+||++|.++|.|.+++|++.+... .++++|++....
T Consensus 533 G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~vv~~~~~~ 609 (696)
T PLN02387 533 GMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHS---YCVALVVPSQQAL 609 (696)
T ss_pred CCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEEeCHHHH
Confidence 5 9999999999999999999999999995 79999999999999999999999999865333 256666654210
Q ss_pred ---------C-CC----------HHHHHHHH-----HhcCcCCCCCcEEEEeCCc------CCCCCccccHHHHHHHHHH
Q 009867 463 ---------N-ID----------EEEVLRFC-----KKNVAAFKVPKRVFITNEL------PKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 463 ---------~-~~----------~~~l~~~~-----~~~l~~~~~p~~i~~~~~l------p~t~~GK~~r~~l~~~~~~ 511 (523)
. .+ .+.+.+.+ +..|..+++|+.+.++++. -+|++.|+.|+.+++.|.+
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~ 689 (696)
T PLN02387 610 EKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKD 689 (696)
T ss_pred HHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHH
Confidence 0 01 01222223 2358999999999988653 3789999999999999999
Q ss_pred hhhhhc
Q 009867 512 QVSAAK 517 (523)
Q Consensus 512 ~~~~~~ 517 (523)
+|++.|
T Consensus 690 ~i~~ly 695 (696)
T PLN02387 690 DLKKLY 695 (696)
T ss_pred HHHHHh
Confidence 998765
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-65 Score=521.29 Aligned_cols=503 Identities=23% Similarity=0.366 Sum_probs=410.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC--C-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS--G-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~--~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
.+|+.++|+.+|+++|+++++... + .+++||+||.++++++|++|++.|+++||+|+++++|+.+++++++||+++|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G 88 (542)
T PRK06018 9 PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIG 88 (542)
T ss_pred CCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcC
Confidence 479999999999999999999842 2 2689999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcc-cccceeeeecCCccc------ccccccc-ccccc
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSEL------TLSLAHS-ESDTN 151 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~-~~~~~ 151 (523)
++++|+++.++.+++.++++.++++.++++....+.+........ ...... ..+..... ...+.+. .....
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (542)
T PRK06018 89 AICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVV-LTDAAHMPQTTLKNAVAYEEWIAEADG 167 (542)
T ss_pred eEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEE-ecccccccccCccccccHHHHhccCCc
Confidence 999999999999999999999999999999887766655443322 111111 11110000 0000000 00001
Q ss_pred ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHH-HH-HHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLA-AS-VSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~-~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
.........+++++++|||||||.||+|.++|.+.+ .. .......+++.++|+++...|++|.+++.. .+.++..|+
T Consensus 168 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~ 246 (542)
T PRK06018 168 DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGT 246 (542)
T ss_pred ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCc
Confidence 111123456789999999999999999999998743 22 223345667889999999999999988766 457788999
Q ss_pred EEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceec
Q 009867 230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE 309 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~ 309 (523)
+++++.. .+++..+++.++++++|++.++|+++..+.+...... ..++++|.++++|+++++++.+++++ +++++++
T Consensus 247 ~~v~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~ 323 (542)
T PRK06018 247 KLVMPGA-KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRH 323 (542)
T ss_pred eEEccCc-CCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEe
Confidence 9888653 5688899999999999999999999999987654332 34689999999999999999999999 8999999
Q ss_pred cccccccccccccCCCCCCC--------CCCCCCcccc-CCcEEEEECCCCCccCCC--ceeEEEEeCCCcccccCCChh
Q 009867 310 AYAMTEATHLMSSNPLPEDG--------PHKPGSVGRP-VGQEIAILDEIGVPQEGG--AKGEVCIRGPNVTKGYKNNPE 378 (523)
Q Consensus 310 ~yG~tE~~~~~~~~~~~~~~--------~~~~~~~g~~-~~~~~~i~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~ 378 (523)
.||+||++.+++.+...... .....++|+| ++.+++++|+++.+++.+ +.|||+++|++++.||++...
T Consensus 324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~ 403 (542)
T PRK06018 324 AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDG 403 (542)
T ss_pred eecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCcc
Confidence 99999999776554321110 0112467888 688999999888887653 689999999999999998322
Q ss_pred hhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEe
Q 009867 379 ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP 458 (523)
Q Consensus 379 ~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 458 (523)
.....+|||+|||+++++++|.+++.||.+|+++.+|.++++.+||+++.++|+|.+++|++.+++..++.+.++++.
T Consensus 404 --~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 481 (542)
T PRK06018 404 --EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481 (542)
T ss_pred --cEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEe
Confidence 111257899999999999999999999999999999999999999999999999999999999988878888888888
Q ss_pred CCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 459 REGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 459 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
.++...+.++++++++++++.+++|..+++++++|+|++||++|++|+++|.++
T Consensus 482 ~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 535 (542)
T PRK06018 482 KPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY 535 (542)
T ss_pred CCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence 877777888999999999999999999999999999999999999999998773
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=534.41 Aligned_cols=497 Identities=23% Similarity=0.358 Sum_probs=391.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC------c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG------K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~------~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
..|+.++++++++++|+++|++..+ + ..+||+||.++++++|++|.+. +++||+|+++++|++++++++||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA 111 (612)
T PRK12476 33 GTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFA 111 (612)
T ss_pred cCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHH
Confidence 3689999999999999999998632 1 4799999999999999999986 89999999999999999999999
Q ss_pred HHHhcCEEeeC-CCCCC--HHHHHHHHhhCCceEEEecccchhHHHHHHhhcc-cccceeeeecCCcccccccccccccc
Q 009867 75 VIRARATAAPL-NAAYT--PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-ISHATATLLDADSELTLSLAHSESDT 150 (523)
Q Consensus 75 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (523)
|+++|++++|+ ++.++ .+++.+++++++++++++++.....+........ .....+...+.. .. ...
T Consensus 112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~--~~~ 182 (612)
T PRK12476 112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI-------PD--SAG 182 (612)
T ss_pred HHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc-------cc--ccc
Confidence 99999999999 57766 7899999999999999998776554433322211 100011111110 00 000
Q ss_pred cccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc-cCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-LTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 151 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
.........++++++++|||||||.||+|.++|+++...+......++ +.++++.++.+|++|..|+...++.++..|+
T Consensus 183 ~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~ 262 (612)
T PRK12476 183 ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGH 262 (612)
T ss_pred ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCe
Confidence 011112235689999999999999999999999999887776666677 7889999999999999998775555555555
Q ss_pred EEEeCCCC-CCChhHHHHHHH--hcCccEEeechHHHHHHHhcccC---CCCCCCCCcceEEeccCCCCHHHHHHHHHHh
Q 009867 230 AVTLPAAG-RFSASTFWQDMI--KYNATWYTAVPTIHQIVLDRHVA---KPEPVYPKLRFIRSCSASLAPVILSRLEEAF 303 (523)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~~i~--~~~~t~l~~~P~~~~~l~~~~~~---~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~ 303 (523)
++++.+.. ..++..+++.++ ++++++++.+|+++..+...... ....++++++ +++||++++++..+.+.+.|
T Consensus 263 ~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~ 341 (612)
T PRK12476 263 STLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAF 341 (612)
T ss_pred EEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHH
Confidence 55543311 127888999995 58999999999988877654211 1123468899 99999999999999999987
Q ss_pred ---CC---ceeccccccccccccccCCCCCC------------------------CCCCCCCcccc-CCcEEEEECCC-C
Q 009867 304 ---GA---PVLEAYAMTEATHLMSSNPLPED------------------------GPHKPGSVGRP-VGQEIAILDEI-G 351 (523)
Q Consensus 304 ---~~---~v~~~yG~tE~~~~~~~~~~~~~------------------------~~~~~~~~g~~-~~~~~~i~d~~-~ 351 (523)
|+ .+++.||+||++..++....... .....+++|+| ++.+++++|++ |
T Consensus 342 ~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g 421 (612)
T PRK12476 342 APYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTG 421 (612)
T ss_pred HhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCC
Confidence 44 48999999998765443221100 00012468998 78999999976 9
Q ss_pred CccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------------------CCeeeeCceeeEcCCCcEEEecccccc
Q 009867 352 VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------------------FGWFHTGDIGYFDSDGYLHLVGRIKEL 412 (523)
Q Consensus 352 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------------~~~~~TGD~~~~~~~g~~~~~GR~~~~ 412 (523)
.+++.|+.|||+++|++++.||+++++.+++.|. ++||+|||+|++ .+|.+++.||++|+
T Consensus 422 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~ 500 (612)
T PRK12476 422 AELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADL 500 (612)
T ss_pred cCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcE
Confidence 9999999999999999999999999999988874 249999999998 49999999999999
Q ss_pred eecCCcccChHHHHHHHhc-CCCcee--eEEEeecCCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcCc-CCCC-CcEE
Q 009867 413 INRGGEKISPIEVDAVLLS-HPDIAQ--AVAFGVPDDKYGEEINCAIIPREGSN-IDEEEVLRFCKKNVA-AFKV-PKRV 486 (523)
Q Consensus 413 i~~~G~~v~~~~ie~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~l~-~~~~-p~~i 486 (523)
||++|++|+|.+||++|.+ +|.|.+ +++++++++. ++.+++++++.++.. .+.+++.+++++.+. .+++ |..+
T Consensus 501 I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v 579 (612)
T PRK12476 501 IVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADV 579 (612)
T ss_pred EEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEE
Confidence 9999999999999999985 799999 6778887776 678888888877643 567888899998887 4777 5778
Q ss_pred EEeC--CcCCCCCccccHHHHHHHHHHh
Q 009867 487 FITN--ELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 487 ~~~~--~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
.+++ +||+|++||++|++|+++|.+.
T Consensus 580 ~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 607 (612)
T PRK12476 580 RLVPAGAIPRTTSGKLARRACRAQYLDG 607 (612)
T ss_pred EEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence 8886 6999999999999999998653
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-65 Score=517.15 Aligned_cols=496 Identities=25% Similarity=0.385 Sum_probs=411.4
Q ss_pred HHHHHHHH-HhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEee
Q 009867 6 LIGLLNQV-IDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84 (523)
Q Consensus 6 i~~~l~~~-a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 84 (523)
..++++++ ++.+|+++|++..+ ..+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~ 84 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDI-SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA 84 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence 34566665 56799999998876 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccccccccc-ccccccccCCCCCCCe
Q 009867 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE-SDTNAISKLTNDPSDV 163 (523)
Q Consensus 85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (523)
+++.++.+.+.++++.++++.+++++.....+............+...... ......+.+.. ............++++
T Consensus 85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (508)
T TIGR02262 85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRP-EAGEVQLAELLATESEQFKPAATQADDP 163 (508)
T ss_pred ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCC-CcccccHHHHhhcCCCccCCCCCCCCCc
Confidence 999999999999999999999999987665554443332211111111110 00000000000 0111111223456899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHH-HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
++++|||||||.||+|.++|+++...+.. ....+++.++|+++..+|++|.+++...++.++..|+++++.+. ..++.
T Consensus 164 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~ 242 (508)
T TIGR02262 164 AFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE-RPTPD 242 (508)
T ss_pred EEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC-CCCHH
Confidence 99999999999999999999999877665 45666889999999999999999987778888999999888664 45889
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 322 (523)
.+++.++++++|++.++|.++..++....... ....+++.++++|+.+++++.+.+.+.|++++++.||+||++.++..
T Consensus 243 ~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~-~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 321 (508)
T TIGR02262 243 AVFDRLRRHQPTIFYGVPTLYAAMLADPNLPA-EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLS 321 (508)
T ss_pred HHHHHHHHHCCcEEecchHHHHHHhcCccccc-cccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeec
Confidence 99999999999999999999988876533221 23568999999999999999999999999999999999999976655
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCC
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDG 401 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g 401 (523)
+.. .....+++|+| ++..++++|+++.+++.|+.|||+++|++++.||+++++.+...+.++||+|||+++++++|
T Consensus 322 ~~~---~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g 398 (508)
T TIGR02262 322 NLP---GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDG 398 (508)
T ss_pred CCc---cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCc
Confidence 432 12345678888 78999999999999999999999999999999999999999988999999999999999999
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCc
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN---IDEEEVLRFCKKNVA 478 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~ 478 (523)
.+++.||.+|+++.+|.+++|.+||+.+.++++|.++++++.++....+.+.++++..++.. ...++++++++++|+
T Consensus 399 ~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~ 478 (508)
T TIGR02262 399 SYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLA 478 (508)
T ss_pred cEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999877776777778887765432 235789999999999
Q ss_pred CCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 479 AFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 479 ~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
++++|..+..++++|+|++||++|+.|+++
T Consensus 479 ~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 479 PYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred cCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 999999999999999999999999988753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=525.26 Aligned_cols=481 Identities=23% Similarity=0.289 Sum_probs=377.4
Q ss_pred HHHHHHHHHhhcCCceeEEECCc---ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 6 LIGLLNQVIDQFSSKRALSVSGK---FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 6 i~~~l~~~a~~~p~~~a~~~~~~---~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.+.|..+++++|+++|+++.++ +++||+||.++++++|+.|.++ ++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 88999999999999999987752 6889999999999999999998 899999999999999999999999999986
Q ss_pred eeCCCC--------CCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccc
Q 009867 83 APLNAA--------YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAIS 154 (523)
Q Consensus 83 v~l~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (523)
+ +++. ...+++.++++.+++++++++......+........ ..+.. .......+ ..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~---~~ 145 (525)
T PRK05851 82 S-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVT-------VHDLA-----TAAHTNRS---AS 145 (525)
T ss_pred c-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcccc-------ccccc-----cccccccc---cc
Confidence 5 3332 233556678899999999998765443322211100 00000 00000000 00
Q ss_pred cCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccC-CCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT-ESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.....++++++++|||||||.||+|.++|.++.+.+......+++. ++|+++..+|++|.+++.. ++.++..|+++++
T Consensus 146 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~ 224 (525)
T PRK05851 146 LTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWL 224 (525)
T ss_pred CCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEE
Confidence 0123578999999999999999999999999999888888888888 8999999999999999875 7889999999998
Q ss_pred CCCCCC--ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHH---hCC---
Q 009867 234 PAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA---FGA--- 305 (523)
Q Consensus 234 ~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~---~~~--- 305 (523)
.+...+ ++..+++.++++++|.+...|.++..+...........++++|.++++|+++++++.+++.+. +|.
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~ 304 (525)
T PRK05851 225 APTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAG 304 (525)
T ss_pred cCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChh
Confidence 663223 567899999999999875544444444333222222346899999999999999999988874 454
Q ss_pred ceeccccccccccccccCCCCC----------C--CCCCCCCcccc-CCcEEEEECCCC-CccCCCceeEEEEeCCCccc
Q 009867 306 PVLEAYAMTEATHLMSSNPLPE----------D--GPHKPGSVGRP-VGQEIAILDEIG-VPQEGGAKGEVCIRGPNVTK 371 (523)
Q Consensus 306 ~v~~~yG~tE~~~~~~~~~~~~----------~--~~~~~~~~g~~-~~~~~~i~d~~~-~~~~~g~~Gel~v~~~~~~~ 371 (523)
.+++.||+||++..++...... + ......++|+| +|++++++|+++ .+++.|+.|||+++|++++.
T Consensus 305 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~ 384 (525)
T PRK05851 305 AAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMS 384 (525)
T ss_pred hcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhh
Confidence 4899999999986655432110 0 11233578999 799999999665 46889999999999999999
Q ss_pred ccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 372 gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
||++++..+ .+|||+|||+++++ +|.++++||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 385 GY~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~ 459 (525)
T PRK05851 385 GYLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSAR 459 (525)
T ss_pred ccccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCc
Confidence 999988643 36899999999996 7999999999999999999999999999999999999999999988776666
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCcCC--CCCcEEEEeC--CcCCCCCccccHHHHHHHHHH
Q 009867 452 INCAIIPREGSNIDEEEVLRFCKKNVAAF--KVPKRVFITN--ELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 452 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~i~~~~--~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+.++++... ...+.+.+.++++++++.+ ++|..+++++ +||+|++||++|+.|++.+.+
T Consensus 460 ~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 460 PGLVIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred eeEEEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 655554431 1234566777787777776 8999999998 899999999999999988765
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=531.80 Aligned_cols=501 Identities=24% Similarity=0.315 Sum_probs=394.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC--c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG--K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~--~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
..|+.++|.++++++|+++|+.+.+ + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 3589999999999999999998642 1 58999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCC-----HHHHHHHHhhCCceEEEecccc-hhHHHHHHhhcccccceeeeecCC-ccccccccccccc--
Q 009867 79 RATAAPLNAAYT-----PDEFEFYLSDSESKLLLTPAEG-NAAAQAAASKLNISHATATLLDAD-SELTLSLAHSESD-- 149 (523)
Q Consensus 79 G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 149 (523)
|++++|++|.++ .+++.+++++++++++++++.. .............. .+...... ......+......
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~ 195 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVE--VVAVRGAVPGRAATPFAALLATPP 195 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCce--EEEecCCCCCcccccHHHHhcccc
Confidence 999999999998 7999999999999999997542 11111110010111 11011000 0000011110000
Q ss_pred c--cccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccC--CCceEEEEcChhhHHHHHHHHHHhh
Q 009867 150 T--NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT--ESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 150 ~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
. .........++++++++|||||||.||+|.++|+++..........+++. +.+++++.+|++|.+++...++.++
T Consensus 196 ~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l 275 (614)
T PRK08180 196 TAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVL 275 (614)
T ss_pred ccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence 0 00111234578999999999999999999999999998887776666654 5689999999999999887788999
Q ss_pred hcCcEEEeCCCCCC---ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC---CCCCCCcceEEeccCCCCHHHHHHH
Q 009867 226 AAGAAVTLPAAGRF---SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 226 ~~g~~~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~---~~~~~~l~~i~~~g~~~~~~~~~~~ 299 (523)
..|+++++.+. .+ .+..+++.++++++|+++++|.++..|++...... ...++++|.+++||+++++++.+.+
T Consensus 276 ~~G~~v~~~~~-~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~~~ 354 (614)
T PRK08180 276 YNGGTLYIDDG-KPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWDRL 354 (614)
T ss_pred hcCCEEEEeCC-CccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHHHH
Confidence 99999988652 22 34577889999999999999999999987543221 1246899999999999999999999
Q ss_pred HHH----hC--CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccc
Q 009867 300 EEA----FG--APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKG 372 (523)
Q Consensus 300 ~~~----~~--~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~g 372 (523)
.+. +| .++++.||+||++++++..... ....+++|+| +|++++++|+ ++.|||+++|++++.|
T Consensus 355 ~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~svG~p~pg~~v~i~d~-------~~~GEi~vrg~~v~~G 424 (614)
T PRK08180 355 DRVAEATCGERIRMMTGLGMTETAPSATFTTGP---LSRAGNIGLPAPGCEVKLVPV-------GGKLEVRVKGPNVTPG 424 (614)
T ss_pred HHHHHhhcCCCceeeeeecccccCCceEecccc---cCCCCcccCccCCcEEEEecC-------CCCcEEEEecCccchh
Confidence 875 33 6789999999998766544321 2356789999 7999999885 4569999999999999
Q ss_pred cCCChhhhhhhc-cCCeeeeCceeeE----cCCCcEEEeccccccee-cCCcccC--hHHHHHHHhcCCCceeeEEEeec
Q 009867 373 YKNNPEANKSAF-LFGWFHTGDIGYF----DSDGYLHLVGRIKELIN-RGGEKIS--PIEVDAVLLSHPDIAQAVAFGVP 444 (523)
Q Consensus 373 y~~~~~~~~~~~-~~~~~~TGD~~~~----~~~g~~~~~GR~~~~i~-~~G~~v~--~~~ie~~l~~~~~v~~~~v~~~~ 444 (523)
|+++++.+.+.| .+|||+|||+|++ |++|.+++.||++|+++ .+|++++ +.|+|.++.++|.|.+++|++.+
T Consensus 425 Y~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~ 504 (614)
T PRK08180 425 YWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD 504 (614)
T ss_pred hcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC
Confidence 999999999888 5899999999999 46899999999999888 6798766 77888899999999999999987
Q ss_pred CCCCCceeEEEEEeCCCC---------------CCCHHHHHHHHHhcCcCCC--------CCcEEEEeCCcCCC------
Q 009867 445 DDKYGEEINCAIIPREGS---------------NIDEEEVLRFCKKNVAAFK--------VPKRVFITNELPKT------ 495 (523)
Q Consensus 445 ~~~~~~~~~~~v~~~~~~---------------~~~~~~l~~~~~~~l~~~~--------~p~~i~~~~~lp~t------ 495 (523)
++. +.++|++.++. ..+.+++++++++.|..++ +|.++++++++|++
T Consensus 505 ~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t 580 (614)
T PRK08180 505 RDE----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEIT 580 (614)
T ss_pred CCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccC
Confidence 553 56777765431 1244668888887777666 89999999999876
Q ss_pred CCccccHHHHHHHHHHhhhhhcCCC
Q 009867 496 ASGKIQRRIVSEHFLAQVSAAKVPK 520 (523)
Q Consensus 496 ~~GK~~r~~l~~~~~~~~~~~~~~~ 520 (523)
++||+.|+.+.+.|.++|++.|...
T Consensus 581 ~~~~~~R~~~~~~y~~~i~~lY~~~ 605 (614)
T PRK08180 581 DKGYINQRAVLARRAALVEALYADE 605 (614)
T ss_pred ccccccHHHHHHHhHHHHHHHhCCC
Confidence 5778999999999999999988754
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=516.47 Aligned_cols=496 Identities=30% Similarity=0.460 Sum_probs=404.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+...+ +.+||.||.++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRD-RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECC-cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 4589999999999999999998876 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccch--hHHHHHHhhcccccceeeeecCCc-cc------------ccccccc-
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNISHATATLLDADS-EL------------TLSLAHS- 146 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~- 146 (523)
+|++|..+.+++.++++.++++++++++... ...............++ ...... .. ...+.+.
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIV-CEDDNWGKVGTPQAPIPADPRIVTYADFV 177 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEE-ecccccccccccccccCCCcccccHHHHH
Confidence 9999999999999999999999999986421 11111111101111111 111000 00 0000000
Q ss_pred cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh------ccCCCceEEEEcChhhHHHHHHH
Q 009867 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY------KLTESDSTVIVLPLFHVHGMLAG 220 (523)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~g~~~~ 220 (523)
.............++++++++|||||||.||+|.++|+++....... ..+ .....++++...|++|.+++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 256 (541)
T TIGR03205 178 KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVI 256 (541)
T ss_pred hcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence 00000111123456899999999999999999999999987654322 221 12335788999999999998888
Q ss_pred HHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHH
Q 009867 221 LLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300 (523)
Q Consensus 221 ~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~ 300 (523)
++.++..|+++++.. ..++..+++.++++++|++.++|+++..+.+..... ...+++++.++++|+.+++++.+++.
T Consensus 257 ~~~~l~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~~l~~i~~gg~~~~~~~~~~~~ 333 (541)
T TIGR03205 257 LLRSLRRGDLISLHQ--RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLE-KRDLSSLATIGSGGAPLPVEVANFFE 333 (541)
T ss_pred HHHHHhcCCEEEecC--CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcccc-ccCccccceEEEccccCCHHHHHHHH
Confidence 889999999988875 578999999999999999999999999987653222 23467899999999999999999999
Q ss_pred HHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEE--CCCCCccCCCceeEEEEeCCCcccccCCCh
Q 009867 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAIL--DEIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377 (523)
Q Consensus 301 ~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~--d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~ 377 (523)
+.++.++++.||+||++..++.+... .....+++|+| +++.++++ |+.+++++.|+.|||+++|++++.||++++
T Consensus 334 ~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~ 411 (541)
T TIGR03205 334 RKTGLKLKSGWGMTETCSPGTGHPPE--GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRP 411 (541)
T ss_pred HHhCCCeecccccccCCcccccCCCC--CCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCCh
Confidence 88899999999999998776654321 22345678888 67776654 677889999999999999999999999999
Q ss_pred hhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEE
Q 009867 378 EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII 457 (523)
Q Consensus 378 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 457 (523)
+.+.+.|.++||+|||+++++++|.+++.||.+|++|.+|++++|.+||+.+.++++|.+++|++.+++..++.+.++++
T Consensus 412 ~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 491 (541)
T TIGR03205 412 EESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVK 491 (541)
T ss_pred hhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEE
Confidence 99998899999999999999999999999999999999999999999999999999999999999988877788888888
Q ss_pred eCCCC-CCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 458 PREGS-NIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 458 ~~~~~-~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
+.++. ..+.++++++++++|+.+++|..+++++++|+|++||++|++|+
T Consensus 492 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 492 LRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred ECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 77653 35778999999999999999999999999999999999999863
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=520.72 Aligned_cols=499 Identities=28% Similarity=0.464 Sum_probs=408.3
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.|+.++|...++++|+++|++..+ +++||+||.++++++|..|+ +.|+++||+|+++++|+.++++++|||+++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHSFG-KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEECC-ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 589999999999999999999876 69999999999999999997 5899999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeee-cC---C----------------ccc---
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLL-DA---D----------------SEL--- 139 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~----------------~~~--- 139 (523)
+|++|.++.+++.+++..++++.+++++.....+.......+......... +. . ...
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN 183 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence 999999999999999999999999998876655444332222211111000 00 0 000
Q ss_pred -ccccccc--cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc----cCCC-ceEEEEcCh
Q 009867 140 -TLSLAHS--ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK----LTES-DSTVIVLPL 211 (523)
Q Consensus 140 -~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~-~~~~~~~p~ 211 (523)
...+... .......+.....++++++++|||||||.||+|.++|.++..........++ +.++ ++++...|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (560)
T PRK08751 184 GAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPL 263 (560)
T ss_pred ccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecCh
Confidence 0000000 0000011122345789999999999999999999999999887766555443 3333 567788999
Q ss_pred hhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCC
Q 009867 212 FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291 (523)
Q Consensus 212 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~ 291 (523)
+|.+++....+.++..|++.++... ..++..+++.++++++|++.++|.++..+.+...... ..++++|.+++||+.+
T Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~l~~lr~v~~gG~~~ 341 (560)
T PRK08751 264 YHIFALTANGLVFMKIGGCNHLISN-PRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQ-IDFSSLKMTLGGGMAV 341 (560)
T ss_pred HHHHHHHHhhhhHhhccceEEEecC-cCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCC-cchhhheeeeeCCCCC
Confidence 9999987666667777776666443 4578899999999999999999999999987643322 3467999999999999
Q ss_pred CHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcc
Q 009867 292 APVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVT 370 (523)
Q Consensus 292 ~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~ 370 (523)
++.+.+.+.+.+++.+++.||+||++..++.+.. ......+++|.| ++..++++|+++.+++.|+.|||+++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~ 419 (560)
T PRK08751 342 QRSVAERWKQVTGLTLVEAYGLTETSPAACINPL--TLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVM 419 (560)
T ss_pred CHHHHHHHHHHhCCeEEEeeccccCCCceecccc--cccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccc
Confidence 9999999999899999999999999876655432 122344678888 7899999999999999999999999999999
Q ss_pred cccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCC
Q 009867 371 KGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449 (523)
Q Consensus 371 ~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~ 449 (523)
.||+++++.+...+ .+|||+|||+++++++|.+++.||.+|+++.+|.+++|.+||+.+..+++|.+++|++.++...+
T Consensus 420 ~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g 499 (560)
T PRK08751 420 KGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSG 499 (560)
T ss_pred hhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCC
Confidence 99999999888777 57899999999999999999999999999999999999999999999999999999999888777
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 450 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+.+.++++.. +...+.++++++++++++.+++|..++++++||+|++||++|+.|++.
T Consensus 500 e~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 500 EIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA 557 (560)
T ss_pred ceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence 7676666654 445677899999999999999999999999999999999999999865
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-64 Score=515.09 Aligned_cols=506 Identities=28% Similarity=0.456 Sum_probs=414.6
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..++.++|..+++++|+++|+...+ ..+||.||.++++++|..|.+ .|+++||+|+++++|+.++++++|||+++|++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~-~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMG-EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI 100 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECC-ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 3579999999999999999999876 699999999999999999985 89999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-ecCCcc--c-------------------
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDADSE--L------------------- 139 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------------------- 139 (523)
++|++|.++.+.+.++++.+++++++++++....+..+............. ...... .
T Consensus 101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08974 101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL 180 (560)
T ss_pred EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence 999999999999999999999999999876655444433222211111100 000000 0
Q ss_pred --cccccccc--ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc---cCCCceEEEEcChh
Q 009867 140 --TLSLAHSE--SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212 (523)
Q Consensus 140 --~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~ 212 (523)
.....+.. .............+++++++|||||||.||+|.++|.++...+......+. ...++.++..+|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 260 (560)
T PRK08974 181 PDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLY 260 (560)
T ss_pred CCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHH
Confidence 00000000 000001112245789999999999999999999999999876655433332 34466788899999
Q ss_pred hHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCC
Q 009867 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLA 292 (523)
Q Consensus 213 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~ 292 (523)
|.+++....+..+..|+++++... ..++..+++.++++++|.+.++|++++.+.+...... ..+++++.++++|+.++
T Consensus 261 ~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~~~ 338 (560)
T PRK08974 261 HIFALTVNCLLFIELGGQNLLITN-PRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQE-LDFSSLKLSVGGGMAVQ 338 (560)
T ss_pred HHHHHHHHHHHHhhcCCeEEEecC-ccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCccc-CCccceeEEEecCccCC
Confidence 999987777778888888776543 3578889999999999999999999999987654332 34678999999999999
Q ss_pred HHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCccc
Q 009867 293 PVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTK 371 (523)
Q Consensus 293 ~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~ 371 (523)
+.+.+.+++.+|+++++.||+||++.++..+... .....+++|.| +++.++++|+++.+++.|+.|||+++|+.++.
T Consensus 339 ~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~ 416 (560)
T PRK08974 339 QAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYD--LDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVML 416 (560)
T ss_pred HHHHHHHHHHhCCcEEeeecccccCceeeccCCC--CcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcch
Confidence 9999999998999999999999998776665432 22345678888 78999999999999999999999999999999
Q ss_pred ccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 372 gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
||+++++.+...+.+|||+|||+++++++|.+++.||.+|+++++|.+++|.+||++|.++++|.+++|++.++...++.
T Consensus 417 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~ 496 (560)
T PRK08974 417 GYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEA 496 (560)
T ss_pred hhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceE
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 452 INCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 452 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+.++++..+ ...+.+++++++.+.++.+++|..+.+++++|+|++||++|+.|++...+...
T Consensus 497 ~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~ 558 (560)
T PRK08974 497 VKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKVD 558 (560)
T ss_pred EEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhhc
Confidence 776666543 34567889999999999999999999999999999999999999998876543
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=498.13 Aligned_cols=496 Identities=30% Similarity=0.434 Sum_probs=390.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc---ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK---FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~---~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
..++.+++.+.++.+|+.+++..... +.+||+|+++++.++|.+|++.|+.+||+|+|++.|+++|+++.+||+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 45889999999999999989875432 789999999999999999999999779999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHH-HHhhcc-cccceeeee---cCCccccccc------ccc--
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA-AASKLN-ISHATATLL---DADSELTLSL------AHS-- 146 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~-~~~~~~~~~---~~~~~~~~~~------~~~-- 146 (523)
++.||+.++.+.+++.++|+++++++++++.+....... .....+ +........ .........+ ...
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF 174 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh
Confidence 999999999999999999999999999999865543332 222111 000000000 0000000000 000
Q ss_pred -ccc-ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc-cCCCceEEEEcChhhHHHHHHHHHH
Q 009867 147 -ESD-TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK-LTESDSTVIVLPLFHVHGMLAGLLS 223 (523)
Q Consensus 147 -~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~~~ 223 (523)
... ..........++|++.++|||||||.||||+++|+|+++++.......+ .+++|+.++++|+.|++.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~ 254 (613)
T COG1022 175 LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGL 254 (613)
T ss_pred hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHH
Confidence 000 0011113567899999999999999999999999999999999999997 9999999999999999999876556
Q ss_pred hhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC------------------------------
Q 009867 224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------------------------ 273 (523)
Q Consensus 224 ~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------------------------ 273 (523)
.+..|.+..... ++..+++.+.+++||.++++|.+|+.+.+.-...
T Consensus 255 ~~~~g~~~~~~~----~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~ 330 (613)
T COG1022 255 ALYGGVTVLFKE----DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGG 330 (613)
T ss_pred HhhcceEEEecC----CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhccc
Confidence 666666666644 8999999999999999999999998773321100
Q ss_pred -----------------CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCc
Q 009867 274 -----------------PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSV 336 (523)
Q Consensus 274 -----------------~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~ 336 (523)
....-..++++++||+++++++...++.. |+++.++||+||+++..+.++. .....+++
T Consensus 331 ~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~---~~~~~gtv 406 (613)
T COG1022 331 GPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP---DRFVLGTV 406 (613)
T ss_pred CCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc---cCcccCCc
Confidence 00112489999999999999999999865 8999999999999988888753 45678899
Q ss_pred ccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeCceeeEcCCCcEEEeccccccee
Q 009867 337 GRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELIN 414 (523)
Q Consensus 337 g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~~~~i~ 414 (523)
|+| ++.+++++|+ |||+|+||.+++|||++|+.|++.|. ||||+|||+|.+|++|.+++.||++++|+
T Consensus 407 G~p~p~~evKI~d~----------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~ 476 (613)
T COG1022 407 GKPLPGIEVKIADD----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIK 476 (613)
T ss_pred CCcCCCceEEEccC----------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEE
Confidence 999 8999999995 99999999999999999999999995 99999999999999999999999999999
Q ss_pred -cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC----------C--CCH------HHHHHHH--
Q 009867 415 -RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS----------N--IDE------EEVLRFC-- 473 (523)
Q Consensus 415 -~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~--~~~------~~l~~~~-- 473 (523)
.+|++|.|+.||+.+.++|.|.+.+|++..+.. +.+.+++.... . .+. ..+++.+
T Consensus 477 l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~----~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~ 552 (613)
T COG1022 477 LSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKF----LVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552 (613)
T ss_pred CCCCcccChHHHHHHHhcCCCeeEEEEEecCCcc----eEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHH
Confidence 999999999999999999999999999833332 55666654221 0 011 1122222
Q ss_pred --H---hcCcCCCCCcEEEEeC------CcCCCCCccccHHHHHHHHHHhhhhhcCCC
Q 009867 474 --K---KNVAAFKVPKRVFITN------ELPKTASGKIQRRIVSEHFLAQVSAAKVPK 520 (523)
Q Consensus 474 --~---~~l~~~~~p~~i~~~~------~lp~t~~GK~~r~~l~~~~~~~~~~~~~~~ 520 (523)
. ..+..++.+..+..++ .--+|++=|++|..+.+.|.+.++..+...
T Consensus 553 ~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~ 610 (613)
T COG1022 553 RVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQ 610 (613)
T ss_pred HHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhcc
Confidence 1 1234445665666553 234789999999999999999998776544
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=515.11 Aligned_cols=487 Identities=23% Similarity=0.336 Sum_probs=403.8
Q ss_pred CHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEee
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 84 (523)
|+.+.|...|+.+|+++|+...+ +++||+||.+++.++|..|.+.|+++||+|+++++|+.++++++|||+++|++++|
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~-~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQG-QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIP 79 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCC-cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeC
Confidence 57899999999999999998877 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeE
Q 009867 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVA 164 (523)
Q Consensus 85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (523)
+++.++.+++.++++..+++.++++......... .. ...+..... .. .............+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~------~~--~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~ 144 (502)
T TIGR01734 80 VDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG------TQ--IITLSALEQ-----AE--TSGGPVSFDHAVKGDDNY 144 (502)
T ss_pred CCCcChHHHHHHHHHhcCCCEEEecccccccccC------Cc--eEEchHhhh-----hh--hhcCCccccccCCCCCeE
Confidence 9999999999999999999999998764322110 00 000000000 00 000001111223578899
Q ss_pred EEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CChhH
Q 009867 165 LFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSAST 243 (523)
Q Consensus 165 ~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~~ 243 (523)
+++|||||||.||+|.++|.++.....+....+++..+++++...|++|..++.. ++.++..|+++++.+... .++..
T Consensus 145 ~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~ 223 (502)
T TIGR01734 145 YIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDITNNFKL 223 (502)
T ss_pred EEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHHhcCHHH
Confidence 9999999999999999999999998888888888899999999999999887764 888999999998876422 47889
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.+.+++++.+..+|.+++.+....... ...+++++.++++|+.++++..+.+.+.+ ++.+++.||+||++..++.
T Consensus 224 ~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~-~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~ 302 (502)
T TIGR01734 224 LFEELPKTGLNVWVSTPSFVDMCLLDPNFN-QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTS 302 (502)
T ss_pred HHHHHHHcCCeEEEEChhHHHHHHhccccc-cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEE
Confidence 999999999999999999998876543322 23468999999999999999999999988 7899999999998754443
Q ss_pred CCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--C--CeeeeCcee
Q 009867 323 NPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--F--GWFHTGDIG 395 (523)
Q Consensus 323 ~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--~~~~TGD~~ 395 (523)
.....+ ......++|++ ++.+++++|+++.+++.|+.|||+++|+.++.||+++++.+...+. + +||+|||+|
T Consensus 303 ~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg 382 (502)
T TIGR01734 303 VKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG 382 (502)
T ss_pred EEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEE
Confidence 221111 12233568888 7899999999999999999999999999999999999998887763 2 599999999
Q ss_pred eEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeec-CCCCCceeEEEEEeCCCCCCCH----HHHH
Q 009867 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVP-DDKYGEEINCAIIPREGSNIDE----EEVL 470 (523)
Q Consensus 396 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~l~ 470 (523)
+++++ .+++.||.+|+++.+|++|+|.+||+.+.++++|.++++++.. .....+.++++++......... .+++
T Consensus 383 ~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~ 461 (502)
T TIGR01734 383 TITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIK 461 (502)
T ss_pred EEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHH
Confidence 99876 9999999999999999999999999999999999999999865 3334566778887765433222 6689
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+.+++.++++++|+.+++++++|+|++||++|++|++++.
T Consensus 462 ~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 462 KELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred HHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 9999999999999999999999999999999999999764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=621.16 Aligned_cols=489 Identities=21% Similarity=0.311 Sum_probs=417.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
.++.++|.++|+++|+++|+++.+ .++||+||.++++++|..|.++|+++|++|+++++|+.++++++|||+++|++++
T Consensus 2003 ~~~~~~~~~~a~~~p~~~A~~~~~-~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316 2003 PGVHQRIAEQAARAPEAIAVVFGD-QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcCC-CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence 479999999999999999999877 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|++|.++.+++.++++++++++++++......+.. ..... .... ... . ... ......+.....++++
T Consensus 2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~---~~~~~--~~~~-~~~-~---~~~---~~~~~~~~~~~~~~~~ 2148 (5163)
T PRK12316 2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL---PAGVA--RLPL-DRD-A---EWA---DYPDTAPAVQLAGENL 2148 (5163)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc---ccccc--eEec-cch-h---hhh---ccCccCCCCCCCCCCe
Confidence 99999999999999999999999998764432110 00000 0000 000 0 000 0011111233568999
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||||.++|.++.+.+......++++++++++.+.|+.|..+. ..++.++..|+++++++...+++..
T Consensus 2149 a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~~~~~~~~~~~~ 2227 (5163)
T PRK12316 2149 AYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVLIRDDELWDPEQ 2227 (5163)
T ss_pred EEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEEeCCcccCCHHH
Confidence 999999999999999999999999999998889999999999999999887655 4599999999999887765678999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.++++++|+++++|++++.+.+...... ...++|.+++|||+++++..+.+.+.+ +..+++.||+||++..++.
T Consensus 2228 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 2305 (5163)
T PRK12316 2228 LYDEMERHGVTILDFPPVYLQQLAEHAERDG--RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLL 2305 (5163)
T ss_pred HHHHHHHcCCeEEEcChHHHHHHHhhhhccc--CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeee
Confidence 9999999999999999999999987643322 235899999999999999999999876 6789999999999876654
Q ss_pred CCCCCCCC--CCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--------CCeeee
Q 009867 323 NPLPEDGP--HKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--------FGWFHT 391 (523)
Q Consensus 323 ~~~~~~~~--~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~~~~~T 391 (523)
........ ....++|+| ++.+++++|+++++++.|+.|||+|.|++++.||+++|+.|++.|. .+||+|
T Consensus 2306 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrT 2385 (5163)
T PRK12316 2306 WKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRT 2385 (5163)
T ss_pred eecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEec
Confidence 33221111 122578999 6899999999999999999999999999999999999999999883 249999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+|++++||.++++||+|++||++|++|+|.|||.+|.++|+|.+++|++.++. .++.++++++..++...+.+++++
T Consensus 2386 GDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~~~l~~ 2464 (5163)
T PRK12316 2386 GDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDLLAELRA 2464 (5163)
T ss_pred ccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988665 567889999988777778899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++++|+.|++|..++++++||+|++||++|++|.+...
T Consensus 2465 ~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 2503 (5163)
T PRK12316 2465 WLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPDV 2503 (5163)
T ss_pred HHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCcc
Confidence 999999999999999999999999999999999876543
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=620.65 Aligned_cols=487 Identities=21% Similarity=0.322 Sum_probs=416.4
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|.++++++|+++|++..+ .++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~~-~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~ 588 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFGE-ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY 588 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++.+++++++++........ .. ........+... ... .......+.....+++
T Consensus 589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~--~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~ 656 (5163)
T PRK12316 589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LA--AGVQVLDLDRPA-AWL-----EGYSEENPGTELNPEN 656 (5163)
T ss_pred eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cc--cCceEEEecCcc-hhh-----ccCCCCCCCCCCCCCC
Confidence 99999999999999999999999999865432211 00 000000111000 000 0011111222346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC-CCCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~ 241 (523)
+++++|||||||.||||+++|+++.+.+.+....+++.++++++...|++|..+... ++.++..|+++++.+. ...++
T Consensus 657 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~ 735 (5163)
T PRK12316 657 LAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDP 735 (5163)
T ss_pred eEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccccCCH
Confidence 999999999999999999999999999999999999999999999999999888765 8999999999999753 34689
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|++++.+++.... ..++++|.+++|||++++++.+.+.+.+ ++++++.||+||++..+
T Consensus 736 ~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 812 (5163)
T PRK12316 736 AKLVELINREGVDTLHFVPSMLQAFLQDEDV---ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDV 812 (5163)
T ss_pred HHHHHHHHHcCCeEEEeCHHHHHHHHhcccc---ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeee
Confidence 9999999999999999999999999865332 2467999999999999999999997766 78899999999998655
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------CCeeeeC
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHTG 392 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~~~~TG 392 (523)
+.... ........++|+| +|++++++|+++++++.|+.|||+|+|++++.||+++++.+++.|. ++||+||
T Consensus 813 ~~~~~-~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TG 891 (5163)
T PRK12316 813 THWTC-VEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTG 891 (5163)
T ss_pred eEEec-ccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecC
Confidence 44332 1122345679999 7899999999999999999999999999999999999999998873 2499999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+|++++||.++++||.|++||++|++|+|.|||++|.++|+|.+++|++.+ ++.++++|+..++.....++++++
T Consensus 892 Dl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~~l~~~ 967 (5163)
T PRK12316 892 DLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWREALKAH 967 (5163)
T ss_pred ccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875 567889999877666778899999
Q ss_pred HHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 473 ~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++|+.|++|..++++++||+|++||++|++|.+....
T Consensus 968 l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~~ 1006 (5163)
T PRK12316 968 LAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEAS 1006 (5163)
T ss_pred HHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCcccc
Confidence 999999999999999999999999999999999765443
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=524.49 Aligned_cols=506 Identities=23% Similarity=0.336 Sum_probs=387.9
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC----C--c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS----G--K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~----~--~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
..|+.++|.+.++++|+++|+... + + ..+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 41 ~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA 120 (660)
T PLN02430 41 ITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120 (660)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458999999999999999999642 1 1 2479999999999999999999999999999999999999999999
Q ss_pred HHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHH-HHhhc-ccccceeeeecCCccc----------ccc
Q 009867 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA-AASKL-NISHATATLLDADSEL----------TLS 142 (523)
Q Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~----------~~~ 142 (523)
|+++|++++|+++.++.+++.++++++++++++++......... ..... .+...+ .+....... ...
T Consensus 121 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii-~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
T PLN02430 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIV-SFTSVTEEESDKASQIGVKTYS 199 (660)
T ss_pred HHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEE-EECCCChHHhhhhhcCCcEEEE
Confidence 99999999999999999999999999999999998653322211 11111 111111 111100000 001
Q ss_pred ccccc--ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH-----hccCCCceEEEEcChhhHH
Q 009867 143 LAHSE--SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV-----YKLTESDSTVIVLPLFHVH 215 (523)
Q Consensus 143 ~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~ 215 (523)
+.+.. ............++++++++|||||||.||||+++|+++...+...... .++.++|++++.+|++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~ 279 (660)
T PLN02430 200 WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHIL 279 (660)
T ss_pred HHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHH
Confidence 11100 0000111122357899999999999999999999999998877654322 1467899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-----------------------
Q 009867 216 GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA----------------------- 272 (523)
Q Consensus 216 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~----------------------- 272 (523)
+... .+.++..|+++.+... ++..+++.+.+++||++.++|.+++.+.+....
T Consensus 280 ~~~~-~~~~l~~G~~i~~~~~---~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (660)
T PLN02430 280 DRMI-EEYFFRKGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW 355 (660)
T ss_pred HHHH-HHHHHHcCCEEEEeCC---ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9877 4556888998877542 677899999999999999999999887652100
Q ss_pred ----------CCCC-----------CCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCC
Q 009867 273 ----------KPEP-----------VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPH 331 (523)
Q Consensus 273 ----------~~~~-----------~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 331 (523)
.... ...++|.+++||+++++++.+.++...++.+++.||+||+++..+.... ....
T Consensus 356 ~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~ 433 (660)
T PLN02430 356 MNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFP--DEMC 433 (660)
T ss_pred HhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeecc--ccCC
Confidence 0000 0157999999999999998776654445789999999999876654431 1223
Q ss_pred CCCCcccc-CCcEEEEEC--CCC-CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEec
Q 009867 332 KPGSVGRP-VGQEIAILD--EIG-VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407 (523)
Q Consensus 332 ~~~~~g~~-~~~~~~i~d--~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~G 407 (523)
..+++|+| ++++++++| +.| .+.+.++.|||+|+|++++.||+++++.+.+.+.+|||+|||+|++|+||.+++.|
T Consensus 434 ~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~g 513 (660)
T PLN02430 434 MLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIID 513 (660)
T ss_pred CCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEE
Confidence 46789999 789999976 333 45566678999999999999999999999999999999999999999999999999
Q ss_pred cccccee-cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC----------CCC------HH---
Q 009867 408 RIKELIN-RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS----------NID------EE--- 467 (523)
Q Consensus 408 R~~~~i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~------~~--- 467 (523)
|++|+|| .+|++|+|.+||+++.++|.|.+++|++.. .+..++++|++.... ..+ ..
T Consensus 514 R~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (660)
T PLN02430 514 RKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELK 590 (660)
T ss_pred cccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHH
Confidence 9999999 579999999999999999999999999842 235577777765321 001 11
Q ss_pred -HHHHHH-----HhcCcCCCCCcEEEEeCC------cCCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 468 -EVLRFC-----KKNVAAFKVPKRVFITNE------LPKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 468 -~l~~~~-----~~~l~~~~~p~~i~~~~~------lp~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
.+++.+ +..|+.++++..+.+.++ =.+|+++|+.|+.+.+.|.++|++.|.
T Consensus 591 ~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 653 (660)
T PLN02430 591 EHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653 (660)
T ss_pred HHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence 122222 235899999999988753 259999999999999999999998764
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=506.87 Aligned_cols=455 Identities=30% Similarity=0.490 Sum_probs=390.5
Q ss_pred HhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHH
Q 009867 14 IDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDE 93 (523)
Q Consensus 14 a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 93 (523)
++..++++|+...+ +++||+||.++++++|..|+ ++|+|+++++|+.+++++++||+++|++++|+++..+.++
T Consensus 10 ~~~~~~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 83 (471)
T PRK07787 10 AAAADIADAVRIGG-RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE 83 (471)
T ss_pred hcccCCceEEEeCC-cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence 34568899998876 69999999999999999996 4799999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCC
Q 009867 94 FEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTT 173 (523)
Q Consensus 94 l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 173 (523)
+.+++++++++++++++.... ..+.... ..... .. ........++++++++||||||
T Consensus 84 l~~~l~~~~~~~il~~~~~~~--------~~~~~~~--~~~~~-----------~~--~~~~~~~~~~~~a~i~~TSGTT 140 (471)
T PRK07787 84 RRHILADSGAQAWLGPAPDDP--------AGLPHVP--VRLHA-----------RS--WHRYPEPDPDAPALIVYTSGTT 140 (471)
T ss_pred HHHHHHhcCCCEEEecCCccc--------cccccee--eeccc-----------cc--cccCCCCCCCceEEEEECCCCC
Confidence 999999999999999763110 0010000 00000 00 0001123568999999999999
Q ss_pred CCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCc
Q 009867 174 SRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNA 253 (523)
Q Consensus 174 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~ 253 (523)
|.||+|.++|.++...+......+++.++++++..+|++|..|+...++.++..|+++++.. ..++..+++.++ +++
T Consensus 141 G~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~-~~~ 217 (471)
T PRK07787 141 GPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG--RPTPEAYAQALS-EGG 217 (471)
T ss_pred CCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC--CCCHHHHHHHHh-hCc
Confidence 99999999999999988888888889999999999999999999988999999999999876 568999999999 999
Q ss_pred cEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCC
Q 009867 254 TWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKP 333 (523)
Q Consensus 254 t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~ 333 (523)
+++.++|+++..+.+..... ..++++|.++.||+++++++.+++.+.++.++++.||+||++....... ......
T Consensus 218 t~~~~~P~~~~~l~~~~~~~--~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~---~~~~~~ 292 (471)
T PRK07787 218 TLYFGVPTVWSRIAADPEAA--RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRA---DGERRP 292 (471)
T ss_pred eEEEcchHHHHHHHhCcccc--ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCC---CCcccC
Confidence 99999999999988643222 3467899999999999999999999999999999999999986544332 123345
Q ss_pred CCcccc-CCcEEEEECCCCCccC-CCc-eeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeCceeeEcCCCcEEEeccc
Q 009867 334 GSVGRP-VGQEIAILDEIGVPQE-GGA-KGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRI 409 (523)
Q Consensus 334 ~~~g~~-~~~~~~i~d~~~~~~~-~g~-~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~ 409 (523)
+++|+| ++..++++|+++.+++ .++ .|||+++|++++.||+++++.+...|. +|||+|||++++++||.+++.||.
T Consensus 293 ~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~ 372 (471)
T PRK07787 293 GWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRE 372 (471)
T ss_pred CcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCC
Confidence 679999 7999999998888886 344 899999999999999999999988885 899999999999999999999996
Q ss_pred -ccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEE
Q 009867 410 -KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFI 488 (523)
Q Consensus 410 -~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 488 (523)
+++++.+|.+++|.+||++|.+++.|.+++|++.++...++.+.++++.. ...+.+++.+++++.++++++|..+++
T Consensus 373 ~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~ 450 (471)
T PRK07787 373 STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDVAADELIDFVAQQLSVHKRPREVRF 450 (471)
T ss_pred CceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 88999999999999999999999999999999998888788888888873 336788999999999999999999999
Q ss_pred eCCcCCCCCccccHHHHHH
Q 009867 489 TNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 489 ~~~lp~t~~GK~~r~~l~~ 507 (523)
++++|+|++||++|+.|++
T Consensus 451 ~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 451 VDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred eccCCCCCCccccHHHhcc
Confidence 9999999999999999865
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=528.79 Aligned_cols=504 Identities=22% Similarity=0.327 Sum_probs=383.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC--------------------------CcccccHHHHHHHHHHHHHHHHHcCCCCCC
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS--------------------------GKFDLTYSRIHELVERAASRLVAAGINAGD 56 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~--------------------------~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd 56 (523)
..|+.++|.++++++|+++|+... +.+.+||+||.++++++|++|.++|+++||
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd 147 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS 147 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 358999999999999999999873 126899999999999999999999999999
Q ss_pred EEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC
Q 009867 57 VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD 136 (523)
Q Consensus 57 ~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (523)
+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+.............+...+..
T Consensus 148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~ 227 (700)
T PTZ00216 148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSL 227 (700)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999998765544433322211111111111110
Q ss_pred cc-------cccccccc---c--ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh-----cc
Q 009867 137 SE-------LTLSLAHS---E--SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-----KL 199 (523)
Q Consensus 137 ~~-------~~~~~~~~---~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~ 199 (523)
.. ....+.+. . ............++++++++|||||||.||||+++|+++.+.+......+ .+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~ 307 (700)
T PTZ00216 228 PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP 307 (700)
T ss_pred ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence 00 00011100 0 00011112234678999999999999999999999999998877665443 23
Q ss_pred CCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHH-------HHHhcCccEEeechHHHHHHHhcccC
Q 009867 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQ-------DMIKYNATWYTAVPTIHQIVLDRHVA 272 (523)
Q Consensus 200 ~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~P~~~~~l~~~~~~ 272 (523)
.+++++++.+|++|.+++.. ....+..|+++.+. ++..+.+ .+++++||++.++|.+++.+.+....
T Consensus 308 ~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~ 381 (700)
T PTZ00216 308 EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-----SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEA 381 (700)
T ss_pred CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-----CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHH
Confidence 67899999999999998765 44557788877763 2334443 68899999999999999887643110
Q ss_pred C-------------------------C-C--------------CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 273 K-------------------------P-E--------------PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 273 ~-------------------------~-~--------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
. . . ...+++|.+++||+++++++.++++..++ ++++.||
T Consensus 382 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG 460 (700)
T PTZ00216 382 KLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWG 460 (700)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccC
Confidence 0 0 0 00157999999999999999988887778 9999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCC--CccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCe
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGW 388 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~ 388 (523)
+||+++..+.... .....+++|+| ++++++++|.++ .....++.|||+|+|++++.||+++|+.+++.| .+||
T Consensus 461 ~TEt~~~~~~~~~---~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw 537 (700)
T PTZ00216 461 LTETVCCGGIQRT---GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGW 537 (700)
T ss_pred cccccccccccCC---CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCC
Confidence 9999866554432 22356789999 799999999654 234556789999999999999999999999998 6899
Q ss_pred eeeCceeeEcCCCcEEEeccccccee-cCCcccChHHHHHHHhcCCCcee--eEEEeecCCCCCceeEEEEEeCCC----
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELIN-RGGEKISPIEVDAVLLSHPDIAQ--AVAFGVPDDKYGEEINCAIIPREG---- 461 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~-~~G~~v~~~~ie~~l~~~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~---- 461 (523)
|+|||+|++++||.++++||++|+|| .+|++|.|.+||+++.++|.|.+ ++|+..++. ..+++++++...
T Consensus 538 ~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~~~~~~~ 614 (700)
T PTZ00216 538 FHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTDEAKAMA 614 (700)
T ss_pred eeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecCHHHHHH
Confidence 99999999999999999999999999 99999999999999999999997 344443322 335666665321
Q ss_pred ------CCCC------HH----HHHHHH-----HhcCcCCCCCcEEEEeC------CcCCCCCccccHHHHHHHHHHhhh
Q 009867 462 ------SNID------EE----EVLRFC-----KKNVAAFKVPKRVFITN------ELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 462 ------~~~~------~~----~l~~~~-----~~~l~~~~~p~~i~~~~------~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
...+ .. .+.+.+ +..+..++.++.+.+++ .-.+|+++|++|+.+++.|.++|+
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~ 694 (700)
T PTZ00216 615 FAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIK 694 (700)
T ss_pred HHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHH
Confidence 0000 11 122222 23577888899888874 345799999999999999999999
Q ss_pred hhcCC
Q 009867 515 AAKVP 519 (523)
Q Consensus 515 ~~~~~ 519 (523)
+.|.+
T Consensus 695 ~ly~~ 699 (700)
T PTZ00216 695 ELFAD 699 (700)
T ss_pred HHhcC
Confidence 87754
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=512.09 Aligned_cols=501 Identities=27% Similarity=0.393 Sum_probs=402.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.+.++++|+++|+.+.+ +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~l~~~~~~~a~~~p~~~a~~~~~-~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~ 80 (533)
T PRK07798 2 AWNIADLFEAVADAVPDRVALVCGD-RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP 80 (533)
T ss_pred cccHHHHHHHHHHhCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence 5699999999999999999999876 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccc----cccccccccccccccCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELT----LSLAHSESDTNAISKLTN 158 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 158 (523)
+|+++.++.+++.+++++++++.++++......+...............+........ ..+.+.............
T Consensus 81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (533)
T PRK07798 81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGE 160 (533)
T ss_pred EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCC
Confidence 9999999999999999999999999987766555444322211111111111110000 011110000000011111
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh---------cc------CCCceEEEEcChhhHHHHHHHHHH
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---------KL------TESDSTVIVLPLFHVHGMLAGLLS 223 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------~~------~~~~~~~~~~p~~~~~g~~~~~~~ 223 (523)
...+.++++|||||||.||+|+++|.++..........+ .+ ..+++++..+|++|..++.. ++.
T Consensus 161 ~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~~~ 239 (533)
T PRK07798 161 RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA-AFA 239 (533)
T ss_pred CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHH-HHH
Confidence 223457899999999999999999999876544322211 11 56788999999999999874 889
Q ss_pred hhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHH-HHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHH
Q 009867 224 SFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI-VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302 (523)
Q Consensus 224 ~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~ 302 (523)
++..|+++++.+...+++..+++.++++++|.+.++|..+.. +.+.........+++++.++++|+.+++++.+++.+.
T Consensus 240 ~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~ 319 (533)
T PRK07798 240 ALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLEL 319 (533)
T ss_pred HHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 999999999987556789999999999999999999876543 3333221222356899999999999999999999998
Q ss_pred h-CCceeccccccccccccccCCCCCCCCCCCCCcc--cc-CCcEEEEECCCCCccCCCce--eEEEEeCCCcccccCCC
Q 009867 303 F-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG--RP-VGQEIAILDEIGVPQEGGAK--GEVCIRGPNVTKGYKNN 376 (523)
Q Consensus 303 ~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g--~~-~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~~ 376 (523)
+ +..+++.||+||++.+....... . ....| .+ ++..++++|+++.+++.|+. |+++. ++.++.||+++
T Consensus 320 ~~~~~~~~~YG~tE~~~~~~~~~~~--~---~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~-~~~~~~gy~~~ 393 (533)
T PRK07798 320 LPNVVLTDSIGSSETGFGGSGTVAK--G---AVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIAR-RGHIPLGYYKD 393 (533)
T ss_pred cCCCeEEeeecccccccccccCCCC--C---CccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEe-ecCccccccCC
Confidence 8 78999999999997555443211 1 11222 44 67899999999999998887 77765 45799999999
Q ss_pred hhhhhhhcc--C--CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 009867 377 PEANKSAFL--F--GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEI 452 (523)
Q Consensus 377 ~~~~~~~~~--~--~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 452 (523)
+..+...|. + +||+|||+++++++|.+++.||.+++++.+|++++|.+||+++.++++|.++++++.+++..++.+
T Consensus 394 ~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~ 473 (533)
T PRK07798 394 PEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEV 473 (533)
T ss_pred hhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceE
Confidence 999888874 2 599999999999999999999999999999999999999999999999999999999888777888
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 453 NCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 453 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
.++++..++...+.++++++++++|+.|++|+.+++++++|+|++||++|+.|+++..+
T Consensus 474 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 474 VAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence 88888877766788999999999999999999999999999999999999999998765
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=510.08 Aligned_cols=483 Identities=26% Similarity=0.374 Sum_probs=387.3
Q ss_pred HHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCC
Q 009867 11 NQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89 (523)
Q Consensus 11 ~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~ 89 (523)
..+|+++|+++|+.+. ++.++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~ 83 (501)
T PRK13390 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83 (501)
T ss_pred chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence 3567889999999874 347899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEe
Q 009867 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHT 169 (523)
Q Consensus 90 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 169 (523)
+.+++.+++..+++++++++................ ........ .....+...... .........++++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~a~i~~T 156 (501)
T PRK13390 84 TAPEADYIVGDSGARVLVASAALDGLAAKVGADLPL---RLSFGGEI-DGFGSFEAALAG---AGPRLTEQPCGAVMLYS 156 (501)
T ss_pred CHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccce---EEEecCcc-cccccHHHHhcc---cCCCCCCCcccEEEEeC
Confidence 999999999999999999986543322221111110 01010000 000000000000 00001122357999999
Q ss_pred eCCCCCCcceee--chHHHHHHH----HHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 170 SGTTSRPKGVPL--TQNNLAASV----SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 170 SGtTG~pK~v~~--s~~~l~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
|||||.||+|.+ +|.++.... ......+.+..+++++..+|++|..++... +..+..|+++++.+ .+++..
T Consensus 157 SGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~--~~~~~~ 233 (501)
T PRK13390 157 SGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAK--RFDAQA 233 (501)
T ss_pred CCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcC--CcCHHH
Confidence 999999999995 455544321 112345678889999999999999887553 34566799988876 568999
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccccc
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 322 (523)
+++.++++++|++.++|+++..+.+.... .....+++++.++.+|+++++++.+.+.+.++.++++.||+||+++++..
T Consensus 234 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 313 (501)
T PRK13390 234 TLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFI 313 (501)
T ss_pred HHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEe
Confidence 99999999999999999999988765432 12234678999999999999999999999889999999999999865543
Q ss_pred CCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc---CCeeeeCceeeEc
Q 009867 323 NPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL---FGWFHTGDIGYFD 398 (523)
Q Consensus 323 ~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~~~~~TGD~~~~~ 398 (523)
.. .......+++|+| ++ .++++|+++.+++.|+.|||+++|++++.||+++++.+...+. ++|++|||+++++
T Consensus 314 ~~--~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~ 390 (501)
T PRK13390 314 DS--PDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVD 390 (501)
T ss_pred cc--hhhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEEC
Confidence 32 1122345688999 55 7999999999999999999999999999999999998888763 5799999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHh
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID---EEEVLRFCKK 475 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 475 (523)
++|.+++.||.+++++.+|.+|+|.+||++|.++++|.++++++.+++..++.+.+++++..+.... .++++++++.
T Consensus 391 ~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 470 (501)
T PRK13390 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRS 470 (501)
T ss_pred CCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888888888876553322 3678999999
Q ss_pred cCcCCCCCcEEEEeCCcCCCCCccccHHHHH
Q 009867 476 NVAAFKVPKRVFITNELPKTASGKIQRRIVS 506 (523)
Q Consensus 476 ~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~ 506 (523)
+|+.+++|..+++++++|+|++||++|++|+
T Consensus 471 ~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 471 RIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred hcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 9999999999999999999999999999874
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=492.07 Aligned_cols=493 Identities=27% Similarity=0.379 Sum_probs=414.1
Q ss_pred cCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCH
Q 009867 17 FSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTP 91 (523)
Q Consensus 17 ~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~ 91 (523)
.++++++++.+ ...+||.|+.+++.++|+.|.+.|+++||+|++++|+.++++++++||.++|++.+++-..++.
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~ 157 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA 157 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence 47888887642 1448999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEecccchhHHHH---------HHhhcccc----cceeeeecCCcccccccccc-cccccccccCC
Q 009867 92 DEFEFYLSDSESKLLLTPAEGNAAAQA---------AASKLNIS----HATATLLDADSELTLSLAHS-ESDTNAISKLT 157 (523)
Q Consensus 92 ~~l~~~l~~~~~~~ii~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (523)
.++...+..++++++++.+........ .....+.. .....+.... ....+... ....+..+...
T Consensus 158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~a~~~~~~~~ 235 (626)
T KOG1175|consen 158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN--RDLFWSLELKKASPEHPCVP 235 (626)
T ss_pred HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc--ccccHHHHhhhcCCCCCcee
Confidence 999999999999999998755432211 11111100 0000011111 11112222 22222333566
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHH-HHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNN-LAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
.+.+|+.+|+|||||||.||++.+++.. ++..+.....+++++++|+.++.....|+.+.....+++|..|+++++.+.
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 7889999999999999999999998766 556666778888999999999999999999999989999999999999888
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCC-CCCCCcceEEeccCCCCHHHHHHHHHHhCC-ceecccccc
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMT 314 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~t 314 (523)
..+++..+++.+.++++|++++.|+.++.|.+....... ..+++||.+.++||++.++.++++.+.++. +|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 777999999999999999999999999988776554432 223789999999999999999999999987 599999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCC-ceeEEEEeCC---CcccccCCChh-hhhhhcc--C
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGG-AKGEVCIRGP---NVTKGYKNNPE-ANKSAFL--F 386 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g-~~Gel~v~~~---~~~~gy~~~~~-~~~~~~~--~ 386 (523)
|+|..+..+..... ...+++.+.| +|..+.++|++|+.++.+ +.|+|+++.+ +.+++|+++++ .....|. .
T Consensus 396 EtG~~~i~~~~g~~-p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 396 ETGGICITPKPGKL-PIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred ccCceeeeccCCCC-CcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 99999888764333 5788889999 799999999999999887 9999999984 67889999988 2333333 6
Q ss_pred CeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 009867 387 GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE 466 (523)
Q Consensus 387 ~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 466 (523)
|+|.|||.+++|+||++++.||.||+++++|.++.+.|||+++.+||.|.|++|++.+++..++.+.+|+++.++....+
T Consensus 475 g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~ 554 (626)
T KOG1175|consen 475 GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPE 554 (626)
T ss_pred ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999854443
Q ss_pred ---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 467 ---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 467 ---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++|++++++.+.++..|+.|.+++.||+|.|||+.|+.|++....+
T Consensus 555 ~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 555 QLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred HHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 5678888889999999999999999999999999999999988866
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=511.78 Aligned_cols=503 Identities=25% Similarity=0.410 Sum_probs=398.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
.|....+...++.+|+++|+.+.+ .++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v 98 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHGS-VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVN 98 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEECC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEE
Confidence 468889999999999999999876 6899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcc------ccc-ceeeeecCCc-c---------cccccccc
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN------ISH-ATATLLDADS-E---------LTLSLAHS 146 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-~---------~~~~~~~~ 146 (523)
|+++.++.+++.++++.++++.+++++...+.......... ... ..+....... . ....+.+.
T Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T PLN02479 99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKF 178 (567)
T ss_pred EeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHH
Confidence 99999999999999999999999998876554443322110 010 0111111000 0 00000000
Q ss_pred -cccccccc-cCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHh
Q 009867 147 -ESDTNAIS-KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSS 224 (523)
Q Consensus 147 -~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 224 (523)
........ ......+++++++|||||||.||+|.++|.++..........+++.++++.+..+|++|.+++...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~ 258 (567)
T PLN02479 179 LETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLA 258 (567)
T ss_pred HhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHH
Confidence 00000000 0112334678899999999999999999999876665555667788899999999999999987655556
Q ss_pred hhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC
Q 009867 225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304 (523)
Q Consensus 225 l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~ 304 (523)
+..|.++++. .+++..+++.++++++|++..+|+++..+.+.........+++++.++++|+.+++.+.+++.+. +
T Consensus 259 ~~~g~~~~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~ 334 (567)
T PLN02479 259 ALCGTNICLR---QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-G 334 (567)
T ss_pred hhcCceEecc---CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-C
Confidence 6677766553 46899999999999999999999999999876443322246789999999999999999998865 8
Q ss_pred CceeccccccccccccccCCCCCCC--------CCCCCCcccc-CCcE-EEEEC-CCCCccCCC--ceeEEEEeCCCccc
Q 009867 305 APVLEAYAMTEATHLMSSNPLPEDG--------PHKPGSVGRP-VGQE-IAILD-EIGVPQEGG--AKGEVCIRGPNVTK 371 (523)
Q Consensus 305 ~~v~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~g~~-~~~~-~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~ 371 (523)
.++++.||+||+++.+..+...+.+ .......|.+ ++.. ++++| .++.+++.+ +.|||+++|++++.
T Consensus 335 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~ 414 (567)
T PLN02479 335 FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMK 414 (567)
T ss_pred CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhh
Confidence 9999999999986544432211100 0011234555 4553 78888 567777653 67999999999999
Q ss_pred ccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCce
Q 009867 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEE 451 (523)
Q Consensus 372 gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 451 (523)
||+++++.+...+.+|||+|||+++++++|.+++.||.+|+++.+|++++|.+||.+|.+++.|.+++|++.++...++.
T Consensus 415 GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~ 494 (567)
T PLN02479 415 GYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGES 494 (567)
T ss_pred hhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred eEEEEEeCCCCC-----CCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 452 INCAIIPREGSN-----IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 452 ~~~~v~~~~~~~-----~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+.+++++..+.. ...++++++++++|+.|++|..+.+ +++|+|++||++|+.|++.+.++
T Consensus 495 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~ 559 (567)
T PLN02479 495 PCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEM 559 (567)
T ss_pred eEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhh
Confidence 888888765531 2346799999999999999998766 67999999999999999886654
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-63 Score=504.20 Aligned_cols=487 Identities=23% Similarity=0.344 Sum_probs=407.0
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+|+.++|.++++.+|+++++...+ ..+||+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~-~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~ 80 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLG-EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYI 80 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCC-cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence 578999999999999999998876 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccccccccc-ccccccccCCCCCCC
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE-SDTNAISKLTNDPSD 162 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 162 (523)
|+++.++.+.+.++++..+++++++++..... ...+ ......+ ..... ............+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 144 (503)
T PRK04813 81 PVDVSSPAERIEMIIEVAKPSLIIATEELPLE------ILGI--PVITLDE--------LKDIFATGNPYDFDHAVKGDD 144 (503)
T ss_pred cCCCCChHHHHHHHHHhcCCCEEEeccccccc------ccCC--cEEehHH--------hhhhhhccccccccccCCCCC
Confidence 99999999999999999999999998764110 0000 0000000 00000 000111122345688
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~ 241 (523)
+++++|||||||.||+|.++|+++..........+++..+++++...|++|..++.. ++.++..|+++++.+... .++
T Consensus 145 ~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~~~~~~ 223 (503)
T PRK04813 145 NYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKDMTANF 223 (503)
T ss_pred cEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChhhhcCH
Confidence 999999999999999999999999988888777788899999999999999888655 778999999988876422 478
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.+++++++++..+|++++.+....... ...+++++.++++|+++++.+.+.+.+.+ ++.+++.||+||++..+
T Consensus 224 ~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~ 302 (503)
T PRK04813 224 KQLFETLPQLPINVWVSTPSFADMCLLDPSFN-EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAV 302 (503)
T ss_pred HHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEE
Confidence 89999999999999999999998876543322 23468999999999999999999999998 78899999999997655
Q ss_pred ccCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--CC--eeeeCc
Q 009867 321 SSNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FG--WFHTGD 393 (523)
Q Consensus 321 ~~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~TGD 393 (523)
+....... ......++|++ ++.+++++|+++.+++.|+.|||+++|++++.||++++..+...|. +| ||+|||
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD 382 (503)
T PRK04813 303 TSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGD 382 (503)
T ss_pred EEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCc
Confidence 44322211 12344568888 7899999999999999999999999999999999999998888773 34 999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC----HHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID----EEEV 469 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l 469 (523)
++++ .+|.+++.||.+|+++.+|++++|.+||+.+.++|+|.++++++.++...++.++++++..++.... ..++
T Consensus 383 ~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 461 (503)
T PRK04813 383 AGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAI 461 (503)
T ss_pred eEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHH
Confidence 9999 9999999999999999999999999999999999999999999977766677788888876542111 2468
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++++++++.+++|..+++++++|+|++||++|++|++++.
T Consensus 462 ~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 462 KKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred HHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 89999999999999999999999999999999999998875
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-64 Score=599.77 Aligned_cols=491 Identities=25% Similarity=0.393 Sum_probs=413.0
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|.++++++|+++|++..+ +++||+||.++++++|+.|.+.|+++|++|+++++|+.++++++|||+++|+++
T Consensus 511 ~~~~~~~~~~~a~~~pd~~Al~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~~ 589 (3956)
T PRK12467 511 PDCVHQLIEAQARQHPERPALVFGE-QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY 589 (3956)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCC-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 3589999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++++....+. ...... ...+ +.... . . .......+.....+++
T Consensus 590 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~---~~~~~~--~~~~-~~~~~-~--~---~~~~~~~~~~~~~~~~ 657 (3956)
T PRK12467 590 VPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP---VPAGLR--SLCL-DEPAD-L--L---CGYSGHNPEVALDPDN 657 (3956)
T ss_pred eccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc---cccCcc--EEEe-ccccc-c--c---cccCCCCCCCCCCCCC
Confidence 99999999999999999999999999874332110 000000 0000 10000 0 0 0001111123346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~~ 241 (523)
+++++|||||||.||||+++|+++.+.+......+++.++++++...|++|..+... ++.++..|+++++.+.. ..++
T Consensus 658 ~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lv~~~~~~~~~~ 736 (3956)
T PRK12467 658 LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTE-LFGALASGATLHLLPPDCARDA 736 (3956)
T ss_pred eEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHH-HHHHHhCCCEEEEcCccccCCH
Confidence 999999999999999999999999999999888999999999999999998887665 89999999999997753 4688
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|++++.+++..... ...++|.+++|||.+++++.+.+.+.+ ++++++.||+||++..+
T Consensus 737 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 813 (3956)
T PRK12467 737 EAFAALMADQGVTVLKIVPSHLQALLQASRVA---LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV 813 (3956)
T ss_pred HHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc---cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhhe
Confidence 99999999999999999999999998754332 245779999999999999999999877 78999999999998776
Q ss_pred ccCCCCCCC-CCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc------C--Ceee
Q 009867 321 SSNPLPEDG-PHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------F--GWFH 390 (523)
Q Consensus 321 ~~~~~~~~~-~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------~--~~~~ 390 (523)
+........ .....++|+| ++..++++|+++++++.|+.|||+|+|++++.||+++|+.+++.|. + +||+
T Consensus 814 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yr 893 (3956)
T PRK12467 814 STYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYR 893 (3956)
T ss_pred eeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEe
Confidence 655432211 1123568999 7899999999999999999999999999999999999999999883 1 3999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC-----CCCC
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG-----SNID 465 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----~~~~ 465 (523)
|||+|++++||.++++||.|++||++|++|+|.+||+.|.++|+|.+++|++.++. .+..++++++.... ....
T Consensus 894 TGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~-~~~~lva~vv~~~~~~~~~~~~~ 972 (3956)
T PRK12467 894 TGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGD-AGLQLVAYLVPAAVADGAEHQAT 972 (3956)
T ss_pred cCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCC-CCcEEEEEEEecccccccccccC
Confidence 99999999999999999999999999999999999999999999999999986544 35667888875422 2345
Q ss_pred HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 466 EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 466 ~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
.+++++++++.|+.|++|..++++++||+|++||++|++|.+....
T Consensus 973 ~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 1018 (3956)
T PRK12467 973 RDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDAS 1018 (3956)
T ss_pred HHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCcccc
Confidence 6889999999999999999999999999999999999998775443
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=503.96 Aligned_cols=504 Identities=27% Similarity=0.408 Sum_probs=402.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.+|..+.|++.++.+|+++|+...+ ..+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~ 95 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIHGD-RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL 95 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEECC-eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence 3678899999999999999998876 689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccc-------ccccccc--ccccccc
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL-------TLSLAHS--ESDTNAI 153 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~ 153 (523)
+|+++.++.+++.++++.++++.++++.+....+.............. +....... ...+... .......
T Consensus 96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (545)
T PRK08162 96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV-IDVDDPEYPGGRFIGALDYEAFLASGDPDFA 174 (545)
T ss_pred eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEE-EecCccccccCCCcccccHHHHhccCCcccc
Confidence 999999999999999999999999999887766554433322221111 11100000 0000000 0000001
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.....+.+++++++|||||||.||+|.++|.++..........+.+..+++.++.+|++|.+++...++..+..|.++++
T Consensus 175 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~ 254 (545)
T PRK08162 175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCL 254 (545)
T ss_pred ccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEe
Confidence 11122345789999999999999999999998776665555566778889999999999999887755555555555544
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~ 313 (523)
. .+++..+++.++++++|++.++|+++..+.+...... ..+...+.++++|+.+++++.+.+.+ +++++++.||+
T Consensus 255 -~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~ 329 (545)
T PRK08162 255 -R--KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-AGIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGL 329 (545)
T ss_pred -C--CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc-cCCccceEEEECCCCCCHHHHHHHHH-hCCceeecccc
Confidence 3 4689999999999999999999999999987644322 22345667789999999999998876 48999999999
Q ss_pred cccccccccCCCCCCC--------CCCCCCcccc--CCcEEEEEC-CCCCccCC-C-ceeEEEEeCCCcccccCCChhhh
Q 009867 314 TEATHLMSSNPLPEDG--------PHKPGSVGRP--VGQEIAILD-EIGVPQEG-G-AKGEVCIRGPNVTKGYKNNPEAN 380 (523)
Q Consensus 314 tE~~~~~~~~~~~~~~--------~~~~~~~g~~--~~~~~~i~d-~~~~~~~~-g-~~Gel~v~~~~~~~gy~~~~~~~ 380 (523)
||+++.+..+...... .....+.|.+ .+..++++| +.+.+++. | +.|||+++|+.++.||+++++.+
T Consensus 330 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~ 409 (545)
T PRK08162 330 TETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKAT 409 (545)
T ss_pred cccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhh
Confidence 9987555443211110 0112334444 344678888 57788865 3 47999999999999999999999
Q ss_pred hhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC
Q 009867 381 KSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE 460 (523)
Q Consensus 381 ~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 460 (523)
...|.+|||+|||++++|++|.+++.||.++++|.+|++++|.+||++|.++++|.+++|++.+++..++.+.++++..+
T Consensus 410 ~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~ 489 (545)
T PRK08162 410 EEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKD 489 (545)
T ss_pred HHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988877788888888877
Q ss_pred CCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 461 GSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 461 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+...+.+++++++++.|+.+++|..+++ +++|+|++||++|+.|++++.+..+
T Consensus 490 ~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~ 542 (545)
T PRK08162 490 GASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKA 542 (545)
T ss_pred CCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhh
Confidence 7666788999999999999999998865 6899999999999999988665543
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=496.23 Aligned_cols=430 Identities=23% Similarity=0.359 Sum_probs=359.6
Q ss_pred cccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEe
Q 009867 30 DLTYSRIHELVERAASRLVAAGI-NAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLT 108 (523)
Q Consensus 30 ~~Ty~el~~~~~~~A~~L~~~g~-~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 108 (523)
-+.|+||.++++++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 46899999999999999999987 57999999999999999999999999999999999999999999999999999998
Q ss_pred cccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH
Q 009867 109 PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA 188 (523)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~ 188 (523)
+.+..... ... . .. ......++++++++|||||||.||+|.++|+++..
T Consensus 99 ~~~~~~~~----------------~~~----------~-~~----~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~ 147 (452)
T PRK07445 99 LDQLKLSH----------------PPP----------L-PS----QGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTA 147 (452)
T ss_pred cCcccccc----------------CCC----------C-Cc----cccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHH
Confidence 76532100 000 0 00 00113468899999999999999999999999988
Q ss_pred HHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHh
Q 009867 189 SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268 (523)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 268 (523)
.+......+++.+ ++.++.+|++|.+|+.. ++.++..|+++++.+...+. .......++++++++++|++++.+.+
T Consensus 148 ~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~--~~~~~~~~~~~t~~~~vP~~l~~l~~ 223 (452)
T PRK07445 148 SVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRLK--SGQELPPNPSDFFLSLVPTQLQRLLQ 223 (452)
T ss_pred HHHHHHHHhcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhcc--chhhhhhhcCceEEEehHHHHHHHHh
Confidence 8877777777654 46788999999998865 77889999999887632222 22233457889999999999999886
Q ss_pred cccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEE
Q 009867 269 RHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAIL 347 (523)
Q Consensus 269 ~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~ 347 (523)
.. ...++++|.+++||++++++..+.+.. +++++++.||+||++..+.... ..+......++|+| ++.+++++
T Consensus 224 ~~----~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~~~G~~~p~~~v~i~ 297 (452)
T PRK07445 224 LR----PQWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLK-PDDFLAGNNSSGQVLPHAQITIP 297 (452)
T ss_pred hC----hhhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccC-chhhccCCCcCCccCCCCeEEEc
Confidence 32 123678999999999999999988875 5899999999999886544332 11112244678988 78888887
Q ss_pred CCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHH
Q 009867 348 DEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDA 427 (523)
Q Consensus 348 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~ 427 (523)
.|+.|||+++|++++.||++++.. .+|||+|||++++|+||.+++.||.+|+||.+|++|+|.+||+
T Consensus 298 --------~g~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~ 364 (452)
T PRK07445 298 --------ANQTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEA 364 (452)
T ss_pred --------CCCcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHH
Confidence 467899999999999999985431 3689999999999999999999999999999999999999999
Q ss_pred HHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 428 VLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 428 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+|.++|+|.+++|++.+++..++.+.++++..++ ..+.++++++++++|+.+++|..+++++++|+|++||++|++|++
T Consensus 365 ~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 443 (452)
T PRK07445 365 AILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQ 443 (452)
T ss_pred HHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHH
Confidence 9999999999999999988888888888887655 356789999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 009867 508 HFLAQVS 514 (523)
Q Consensus 508 ~~~~~~~ 514 (523)
++.+++.
T Consensus 444 ~~~~~~~ 450 (452)
T PRK07445 444 IAVQRLG 450 (452)
T ss_pred HHHHhhC
Confidence 9998875
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=518.12 Aligned_cols=507 Identities=23% Similarity=0.299 Sum_probs=385.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc-----ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK-----FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~-----~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
..|+.++|.++++++|+++|+++.+. +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999986431 5899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCH-----HHHHHHHhhCCceEEEecccch-hHHHHHHhhcccccceeeeecCC-ccccccccccccc-
Q 009867 78 ARATAAPLNAAYTP-----DEFEFYLSDSESKLLLTPAEGN-AAAQAAASKLNISHATATLLDAD-SELTLSLAHSESD- 149 (523)
Q Consensus 78 ~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 149 (523)
+|++++|++|.++. +++.++++.++++++++++... ............. ........ ......+.+....
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~ 205 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVT--VVHVTGPGEGIASIAFADLAATP 205 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCce--EEEEcCCCcccccccHHHHhhcC
Confidence 99999999999885 8999999999999999976421 1111111111111 11111100 0000000000000
Q ss_pred -cc--ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCC---CceEEEEcChhhHHHHHHHHHH
Q 009867 150 -TN--AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE---SDSTVIVLPLFHVHGMLAGLLS 223 (523)
Q Consensus 150 -~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~g~~~~~~~ 223 (523)
.. ........++++++++|||||||.||+|.++|.++............... .++.+..+|++|.+|+...++.
T Consensus 206 ~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~ 285 (624)
T PRK12582 206 PTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNG 285 (624)
T ss_pred CcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHH
Confidence 00 00112245789999999999999999999999999887766555444443 5799999999999998877888
Q ss_pred hhhcCcEEEeCCCCCCC---hhHHHHHHHhcCccEEeechHHHHHHHhcccCCC---CCCCCCcceEEeccCCCCHHHHH
Q 009867 224 SFAAGAAVTLPAAGRFS---ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFIRSCSASLAPVILS 297 (523)
Q Consensus 224 ~l~~g~~~~~~~~~~~~---~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~---~~~~~~l~~i~~~g~~~~~~~~~ 297 (523)
++..|+++++.+. .+. ...+++.++++++|+++++|.++..|++...... ...++++|.+++||+++++++.+
T Consensus 286 ~l~~G~tvvl~~~-~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~ 364 (624)
T PRK12582 286 LLWGGGTLYIDDG-KPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYE 364 (624)
T ss_pred HHhCceEEEEcCC-CcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHH
Confidence 9999999998653 222 3456778889999999999999999876533221 12357899999999999999999
Q ss_pred HHHHHh------CCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcc
Q 009867 298 RLEEAF------GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVT 370 (523)
Q Consensus 298 ~~~~~~------~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~ 370 (523)
.+.+.+ ++++++.||+||++.++..... .....+++|+| +|++++++ +.|+.|||+|+|++++
T Consensus 365 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~---~~~~~~svG~p~pg~~v~i~-------~~G~~GEl~vrg~~v~ 434 (624)
T PRK12582 365 RMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW---DTERVGLIGLPLPGVELKLA-------PVGDKYEVRVKGPNVT 434 (624)
T ss_pred HHHHHHHhhcCCCceEEeccccccccceeecccC---CCCCCCCCCcCCCCcEEEEc-------cCCCceEEEEECCccc
Confidence 998863 3679999999999876553221 12345789999 78999885 3478999999999999
Q ss_pred cccCCChhhhhhhc-cCCeeeeCceeeE-c---CCCcEEEeccccccee-cCCcccChHHHH--HHHhcCCCceeeEEEe
Q 009867 371 KGYKNNPEANKSAF-LFGWFHTGDIGYF-D---SDGYLHLVGRIKELIN-RGGEKISPIEVD--AVLLSHPDIAQAVAFG 442 (523)
Q Consensus 371 ~gy~~~~~~~~~~~-~~~~~~TGD~~~~-~---~~g~~~~~GR~~~~i~-~~G~~v~~~~ie--~~l~~~~~v~~~~v~~ 442 (523)
.||+++++.+.+.| .+|||+|||+|++ | ++|.+++.||++|+++ .+|++|+|.+|| .++.++|.|.+++|++
T Consensus 435 ~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG 514 (624)
T PRK12582 435 PGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514 (624)
T ss_pred ccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEc
Confidence 99999999999888 5899999999998 4 4689999999999999 689999999885 5788999999999999
Q ss_pred ecCCCCCceeEEE------EEeCCCC----CCCHHHHHHHHHhc-------CcCCC-CCcEEEEeCCcC------CCCCc
Q 009867 443 VPDDKYGEEINCA------IIPREGS----NIDEEEVLRFCKKN-------VAAFK-VPKRVFITNELP------KTASG 498 (523)
Q Consensus 443 ~~~~~~~~~~~~~------v~~~~~~----~~~~~~l~~~~~~~-------l~~~~-~p~~i~~~~~lp------~t~~G 498 (523)
++++..++.+... ++..++. ..+.+++.++++.. ++.+. +|..+.+++++| +|++|
T Consensus 515 ~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 594 (624)
T PRK12582 515 QDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKG 594 (624)
T ss_pred CCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccc
Confidence 8776654432110 1111111 11234555555544 44554 999999998876 56788
Q ss_pred cccHHHHHHHHHHhhhhhcCCCCC
Q 009867 499 KIQRRIVSEHFLAQVSAAKVPKFG 522 (523)
Q Consensus 499 K~~r~~l~~~~~~~~~~~~~~~~~ 522 (523)
|+.|+.+.++|.++|++.|.+..+
T Consensus 595 ~~~R~~~~~~y~~~i~~ly~~~~~ 618 (624)
T PRK12582 595 YINQRAVLERRAALVERLYAEPPG 618 (624)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=601.02 Aligned_cols=491 Identities=20% Similarity=0.282 Sum_probs=410.4
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..+++++|.++++++|+++|++..+ .++||+||.++++++|+.|.++|+++|++|+++++++.++++++||++++|+++
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~~~-~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASCLD-QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEcCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence 3589999999999999999999888 589999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhccccc-ceeeeecCCcccccccccccccccccccCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-ATATLLDADSELTLSLAHSESDTNAISKLTNDPS 161 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
+|+||+++.+++.++++++++++++++.................. ......+.. .........+.....++
T Consensus 3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 3869 (4334)
T PRK05691 3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV--------QAGEVASHNPGIYSGPD 3869 (4334)
T ss_pred eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc--------ccccccccCCCCCCCCC
Confidence 999999999999999999999999999876543333222211100 000000000 00000011122334678
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCC
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFS 240 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~ 240 (523)
++++++|||||||.||||+++|+++.+.+.+....++++++++++...++.+..+... ++.++..|+++++++.. ..+
T Consensus 3870 ~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~~~~ 3948 (4334)
T PRK05691 3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAIAHD 3948 (4334)
T ss_pred ceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccccCC
Confidence 9999999999999999999999999999999888999999999999999877776655 88999999999886643 347
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHL 319 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~ 319 (523)
+..+++.++++++|++.++|+++..++.... ..++++|.+++|||.++++..+.|.+.+ ++++++.||+||++..
T Consensus 3949 ~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~ 4024 (4334)
T PRK05691 3949 PQGLLAHVQAQGITVLESVPSLIQGMLAEDR----QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDD 4024 (4334)
T ss_pred HHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc----ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeE
Confidence 8899999999999999999999998875422 2367899999999999999999998776 7899999999999987
Q ss_pred cccCCCCCC-CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--------CCee
Q 009867 320 MSSNPLPED-GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--------FGWF 389 (523)
Q Consensus 320 ~~~~~~~~~-~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~~~~ 389 (523)
++....... .......+|+| .+..++++|+.+++++.|..|||+|+|+.++.||+++|+.|++.|. ++||
T Consensus 4025 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~y 4104 (4334)
T PRK05691 4025 VAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLY 4104 (4334)
T ss_pred EEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceee
Confidence 664432221 12233568999 6899999999999999999999999999999999999999999883 3599
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC---H
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID---E 466 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~ 466 (523)
+|||++++++||.++++||+|++||++|.+|.+.|||+.|.++|+|.+++|+... ...++.++++++...+.... .
T Consensus 4105 rTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~~~~~~~~~~~~ 4183 (4334)
T PRK05691 4105 RTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVPHQTVLAQGALL 4183 (4334)
T ss_pred ccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeCCcccccchHHH
Confidence 9999999999999999999999999999999999999999999999998886553 34456788888876543222 3
Q ss_pred HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 467 EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 467 ~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+++++++++.||.||+|..++.+++||+|++||+||++|.+.
T Consensus 4184 ~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4184 ERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred HHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 678999999999999999999999999999999999998764
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=497.96 Aligned_cols=494 Identities=25% Similarity=0.381 Sum_probs=399.4
Q ss_pred HHHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC
Q 009867 10 LNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA 88 (523)
Q Consensus 10 l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~ 88 (523)
....++++|+++|++.. +++.+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++||+++|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 45778899999999873 34689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc-cccccccccccccccccCCCCCCCeEEEE
Q 009867 89 YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE-LTLSLAHSESDTNAISKLTNDPSDVALFL 167 (523)
Q Consensus 89 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 167 (523)
++.+.+.++++.++++.++++............................. ....+.+..... ........++.++++
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~il 160 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGL--PATPIADESLGTDML 160 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCC--CCCCCCCcccccEEE
Confidence 99999999999999999999987765554443332211111111110000 000001000000 011112345678999
Q ss_pred EeeCCCCCCcceeec--hHHHHH---HHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 168 HTSGTTSRPKGVPLT--QNNLAA---SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 168 ~TSGtTG~pK~v~~s--~~~l~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
|||||||.||+|.++ |.++.. ........+++.++++++...|++|..++.. .+.++..|+++++.+ .+++.
T Consensus 161 ~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~--~~~~~ 237 (511)
T PRK13391 161 YSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVME--HFDAE 237 (511)
T ss_pred ECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECC--CCCHH
Confidence 999999999999954 555432 2233455667788999999999999988766 567888899988876 57899
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+....... ...++++++.++++|+.+++++.+.+.+.+|..+++.||+||++.+..
T Consensus 238 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~ 317 (511)
T PRK13391 238 QYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTA 317 (511)
T ss_pred HHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEE
Confidence 9999999999999999999998887653221 123467999999999999999999999989999999999999987655
Q ss_pred cCCCCCCCCCCCCCccccCCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--CCeeeeCceeeEcC
Q 009867 322 SNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FGWFHTGDIGYFDS 399 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~~~TGD~~~~~~ 399 (523)
... .......+++|+|....++++|+++.+++.|+.|||+++|+ ++.||+++++.+...+. ++||+|||++++++
T Consensus 318 ~~~--~~~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~ 394 (511)
T PRK13391 318 CDS--EEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE 394 (511)
T ss_pred ecC--ccccccCCCcCCcccceEEEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECC
Confidence 432 22234456889984337999999999999999999999999 88899999998887773 38999999999999
Q ss_pred CCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhc
Q 009867 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN---IDEEEVLRFCKKN 476 (523)
Q Consensus 400 ~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~ 476 (523)
+|.+++.||.+|++|.+|.++++.+||+++.+++.|.+++|++.++...++.+.++++...+.. ...++++++++++
T Consensus 395 ~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (511)
T PRK13391 395 DGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQR 474 (511)
T ss_pred CccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988888888888887655432 2347899999999
Q ss_pred CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 477 VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 477 l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++.+++|..+.+++++|+|++||++|+.|++.|.+
T Consensus 475 l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 475 LSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred cccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 99999999999999999999999999999998764
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=497.36 Aligned_cols=482 Identities=27% Similarity=0.423 Sum_probs=395.8
Q ss_pred eeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhh
Q 009867 21 RALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSD 100 (523)
Q Consensus 21 ~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~ 100 (523)
.|+...+ +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.
T Consensus 3 ~~~~~~~-~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~ 81 (509)
T PRK12406 3 ATIISGD-RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED 81 (509)
T ss_pred eEEEECC-eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence 3555555 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecccchhHHHHHHhhcccccceeeeecCCc---------c------cccccccccccccccccCCCCCCCeEE
Q 009867 101 SESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS---------E------LTLSLAHSESDTNAISKLTNDPSDVAL 165 (523)
Q Consensus 101 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (523)
+++++++++......+...... .+. ......... . ....+..... ..........+++++
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~ 156 (509)
T PRK12406 82 SGARVLIAHADLLHGLASALPA-GVT--VLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLA--QQEPYDGPPVPQPQS 156 (509)
T ss_pred cCCcEEEEccchhhhhhhhhhc-ccc--eeecccccccccccccccccccCCCCccCHHHHhc--ccCccCCCCCCCceE
Confidence 9999999987765544322211 000 000000000 0 0000000000 001112235689999
Q ss_pred EEEeeCCCCCCcceeechHHH---HHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 166 FLHTSGTTSRPKGVPLTQNNL---AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
++|||||||.||+|.++|... ..........+++.++++++...|++|..+.... +.++..|+++++.+ ..++.
T Consensus 157 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~ 233 (509)
T PRK12406 157 MIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQP--RFDPE 233 (509)
T ss_pred EEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEcc--CCCHH
Confidence 999999999999999876553 3334445567788999999999999998877664 44677888888866 56899
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|.+.++|+++..+++.... ....++++++.++.+|+.+++++.+.+.+.+++.+++.||+||++.++.
T Consensus 234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 313 (509)
T PRK12406 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTF 313 (509)
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEe
Confidence 999999999999999999999999875432 1223468999999999999999999999999999999999999997665
Q ss_pred cCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCccc-ccCCChhhhhhhccCCeeeeCceeeEcC
Q 009867 322 SNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTK-GYKNNPEANKSAFLFGWFHTGDIGYFDS 399 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~~~~~TGD~~~~~~ 399 (523)
.+. .+.....+++|+| ++..++++|+++++++.|+.|||+++++.++. +|++++..+...+.++||+|||++++++
T Consensus 314 ~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~ 391 (509)
T PRK12406 314 ATS--EDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDA 391 (509)
T ss_pred cCc--ccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcC
Confidence 443 2223455678998 78999999999999999999999999998875 8999998888888899999999999999
Q ss_pred CCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcC
Q 009867 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479 (523)
Q Consensus 400 ~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 479 (523)
+|.+++.||.+|++|++|.++++.+||+.|.++++|.++++++.++...++.+.++++..++...+.+++++++++.+++
T Consensus 392 ~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~ 471 (509)
T PRK12406 392 DGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAG 471 (509)
T ss_pred CceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999888777888888888766656789999999999999
Q ss_pred CCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 480 ~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+++|..+++++++|+|++||++|+.|++.+.+.-
T Consensus 472 ~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~ 505 (509)
T PRK12406 472 YKVPKHIEIMAELPREDSGKIFKRRLRDPYWANA 505 (509)
T ss_pred CCCCcEEEEeccCCCCCccchhHHHHHHHHHhhc
Confidence 9999999999999999999999999998877643
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=545.26 Aligned_cols=497 Identities=24% Similarity=0.293 Sum_probs=400.7
Q ss_pred CCCHHHHHHHHHhhcCC-ceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..++.+.+.+.++++|+ +.++.+.+++++||+||+++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 36788999999999874 566665444799999999999999999975 9999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHH--HHHHhhcccccceeeeecCCcccc-c-ccccc-cccccccccC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA--QAAASKLNISHATATLLDADSELT-L-SLAHS-ESDTNAISKL 156 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~ 156 (523)
++|++|..+.+++.+++++++++.+++++...... .................+...... . ..... ....+.....
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFC 788 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCccccC
Confidence 99999999999999999999999999986543321 111111111111111111000000 0 00000 0000011111
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
...++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|..++...++.++..|+++++.+.
T Consensus 789 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~ 868 (1140)
T PRK06814 789 NRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPS 868 (1140)
T ss_pred CCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 34678999999999999999999999999999888888888999999999999999999997778899999999988653
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccc
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~ 316 (523)
..+...+.+.++++++|++..+|++++.+.+... ..+++++|.+++||+++++++.+.+.+.+++++++.||+||+
T Consensus 869 -~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~---~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 944 (1140)
T PRK06814 869 -PLHYRIIPELIYDTNATILFGTDTFLNGYARYAH---PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTET 944 (1140)
T ss_pred -cccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccc
Confidence 3456678899999999999999999998876532 234689999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhh-hhccCCeeeeCce
Q 009867 317 THLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK-SAFLFGWFHTGDI 394 (523)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~~~~~TGD~ 394 (523)
+..+..+.. .....+++|+| +++++++.+.++ .++.|||+++|++++.||+++++... ....+|||+|||+
T Consensus 945 ~~~~~~~~~---~~~~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl 1017 (1140)
T PRK06814 945 APVIALNTP---MHNKAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017 (1140)
T ss_pred cceEEecCC---CCCCCCcCCccCCCCeEEEeecCC----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCE
Confidence 877655431 12345689999 789999887543 36789999999999999998765332 2235799999999
Q ss_pred eeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 009867 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474 (523)
Q Consensus 395 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 474 (523)
+++|+||.+++.||.||++|.+|++++|.+||+++.+++++.+++|++.+++..++.+++++. +...+.++++++++
T Consensus 1018 ~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~ 1094 (1140)
T PRK06814 1018 VTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRAAFLAHAK 1094 (1140)
T ss_pred EEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888877665543 33456788999998
Q ss_pred hc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 475 KN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 475 ~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+. ++++++|..+++++++|+|++||++|++|+++..+...
T Consensus 1095 ~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814 1095 AAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred HcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhc
Confidence 64 99999999999999999999999999999998777654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=497.42 Aligned_cols=480 Identities=27% Similarity=0.400 Sum_probs=392.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEE
Q 009867 28 KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLL 107 (523)
Q Consensus 28 ~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 107 (523)
++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHH
Q 009867 108 TPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLA 187 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~ 187 (523)
+++...................+............+........ .......++.++++|||||||.||+|.++|.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~ 166 (502)
T PRK08276 89 VSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQP--DTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166 (502)
T ss_pred EccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCC--CCCCCCCCcceEEEECCCCCCCCceEEEccCCcc
Confidence 99877665554433322111111111111000001110001000 1112245678999999999999999999887654
Q ss_pred HHH------HHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechH
Q 009867 188 ASV------SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPT 261 (523)
Q Consensus 188 ~~~------~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~ 261 (523)
... ...........++++++..|++|..++.. .+.++..|+++++.+ .+++..+++.++++++|++.++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~ 243 (502)
T PRK08276 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVME--KFDAEEALALIERYRVTHSQLVPT 243 (502)
T ss_pred hhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcC--CCCHHHHHHHHHHhCCeEEEehHH
Confidence 322 11112222346788999999999988777 457888999988876 578999999999999999999999
Q ss_pred HHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCccccC
Q 009867 262 IHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340 (523)
Q Consensus 262 ~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~~ 340 (523)
++..+++..... ...+++++|.++++|+++++++.+++.+.++..+++.||+||++.++.... .......+++|+|.
T Consensus 244 ~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~--~~~~~~~~~~G~~~ 321 (502)
T PRK08276 244 MFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITS--EDWLAHPGSVGKAV 321 (502)
T ss_pred HHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecC--ccccccCCCcceec
Confidence 999998765332 223578999999999999999999999999989999999999987655433 12233456789998
Q ss_pred CcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-CeeeeCceeeEcCCCcEEEecccccceecCCcc
Q 009867 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419 (523)
Q Consensus 341 ~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~ 419 (523)
+..++++|+++.+++.|+.|||+++|+.++.||++++..+...+.+ +||+|||+++++++|.+++.||.+++++.+|.+
T Consensus 322 ~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~ 401 (502)
T PRK08276 322 LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVN 401 (502)
T ss_pred ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEE
Confidence 7799999988999999999999999999999999999998888855 999999999999999999999999999999999
Q ss_pred cChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCC
Q 009867 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTA 496 (523)
Q Consensus 420 v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~ 496 (523)
+++.+||.++.++++|.++++++..++..++.+.++++..++...+. +++++.++++++.+++|..+++++++|+|+
T Consensus 402 v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~ 481 (502)
T PRK08276 402 IYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTP 481 (502)
T ss_pred eCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCc
Confidence 99999999999999999999999988888888999999876644333 479999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHhhh
Q 009867 497 SGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 497 ~GK~~r~~l~~~~~~~~~ 514 (523)
+||++|+.|++.|.+.-+
T Consensus 482 ~GKi~r~~L~~~~~~~~~ 499 (502)
T PRK08276 482 TGKLYKRRLRDRYWEGRQ 499 (502)
T ss_pred ccchhHHHHHHHHHhhhh
Confidence 999999999999887654
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=509.34 Aligned_cols=503 Identities=26% Similarity=0.380 Sum_probs=398.9
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCc--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGK--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.|+.++|...++.+|+.+++...++ +.+||.||++++.++|.+|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 100 (579)
T PRK09192 21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV 100 (579)
T ss_pred hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCe
Confidence 5899999999999987776543322 57999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCC-------HHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccccccccc-cccccc
Q 009867 82 AAPLNAAYT-------PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE-SDTNAI 153 (523)
Q Consensus 82 ~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 153 (523)
++|+++..+ .+++.++++.++++++++++...+.+........... . . .+.... ......
T Consensus 101 ~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~--~--~--------~~~~~~~~~~~~~ 168 (579)
T PRK09192 101 PVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH--V--L--------SHAWFKALPEADV 168 (579)
T ss_pred eEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccc--e--e--------ehhhhcccCCCcc
Confidence 999987443 6899999999999999998876554443321111100 0 0 000000 000011
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH-HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEE
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 232 (523)
......++++++++|||||||.||+|.++|.++...+..... .+++.++|+++..+|++|..++...++.++..|++++
T Consensus 169 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~ 248 (579)
T PRK09192 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVD 248 (579)
T ss_pred ccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeE
Confidence 112345689999999999999999999999999988877776 7889999999999999999999887888889999887
Q ss_pred eCCCCCC--ChhHHHHHHHhcCccEEeechHHHHHHHhcccCC--CCCCCCCcceEEeccCCCCHHHHHHHHHHhC----
Q 009867 233 LPAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK--PEPVYPKLRFIRSCSASLAPVILSRLEEAFG---- 304 (523)
Q Consensus 233 ~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~---- 304 (523)
+.....+ ++..+++.+.++++++++..|..+..+....... ...+++++|.++++|+.+++++.+.+.+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~ 328 (579)
T PRK09192 249 YLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGF 328 (579)
T ss_pred eeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCC
Confidence 6542222 5788999999999987776555555544332111 1234689999999999999999999988773
Q ss_pred --CceeccccccccccccccCCCCCCC-------------------------CCCCCCcccc-CCcEEEEECCCCCccCC
Q 009867 305 --APVLEAYAMTEATHLMSSNPLPEDG-------------------------PHKPGSVGRP-VGQEIAILDEIGVPQEG 356 (523)
Q Consensus 305 --~~v~~~yG~tE~~~~~~~~~~~~~~-------------------------~~~~~~~g~~-~~~~~~i~d~~~~~~~~ 356 (523)
..+++.||+||++..++........ .....++|+| ++.+++++|+++..++.
T Consensus 329 ~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~ 408 (579)
T PRK09192 329 DDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPE 408 (579)
T ss_pred ChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCC
Confidence 2488999999998665543221000 0012467888 79999999999999999
Q ss_pred CceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCc
Q 009867 357 GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI 435 (523)
Q Consensus 357 g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v 435 (523)
|+.|||+++|++++.||+++ ..+.+.+ .++||+|||++++ .+|.++++||.+|+||++|++|+|.+||++|.++|+|
T Consensus 409 g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V 486 (579)
T PRK09192 409 RVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPEL 486 (579)
T ss_pred CCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCc
Confidence 99999999999999999998 4444444 6899999999999 9999999999999999999999999999999999999
Q ss_pred e--eeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCc-CCCCCcEEEEeC--CcCCCCCccccHHHHHHHHH
Q 009867 436 A--QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVA-AFKVPKRVFITN--ELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 436 ~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~--~lp~t~~GK~~r~~l~~~~~ 510 (523)
. ++++++++++. ++.+.++++...+...+.+++++++++.+. .+++|..+++++ +||+|++||++|++|++++.
T Consensus 487 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~ 565 (579)
T PRK09192 487 RSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYL 565 (579)
T ss_pred cCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHH
Confidence 8 89999988775 457777777766555566789999998875 688898888885 89999999999999999999
Q ss_pred HhhhhhcCCCC
Q 009867 511 AQVSAAKVPKF 521 (523)
Q Consensus 511 ~~~~~~~~~~~ 521 (523)
......+.+++
T Consensus 566 ~~~~~~~~~~~ 576 (579)
T PRK09192 566 SGAFASLDVAA 576 (579)
T ss_pred cCCCCcccccc
Confidence 87665554443
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=492.93 Aligned_cols=452 Identities=24% Similarity=0.336 Sum_probs=384.5
Q ss_pred CHHHHH-HHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 5 TLIGLL-NQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 5 ti~~~l-~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
++.+.+ .++++++|+++|+...+ +.+||.||+++++++|..|.+.|+++||+|+++++|+.+++++++||+++|++++
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~~-~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v 81 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLND-EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL 81 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecCC-cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence 344444 56688999999998766 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++..+.+++.++++++++++++++.+.... .. +.... .... .........++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~------~~~~~-------------~~~~----~~~~~~~~~~~~~ 137 (458)
T PRK09029 82 PLNPQLPQPLLEELLPSLTLDFALVLEGENTF-SA------LTSLH-------------LQLV----EGAHAVAWQPQRL 137 (458)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hh------ccccc-------------cccc----cccCcccCCCCCe
Confidence 99999999999999999999999988764321 00 00000 0000 0011123457889
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhH
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 243 (523)
++++|||||||.||+|.++|+++...+......+++.++++++..+|++|.+++.. ++.++..|+++++.+. ..
T Consensus 138 a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~-----~~ 211 (458)
T PRK09029 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK-----QP 211 (458)
T ss_pred EEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh-----HH
Confidence 99999999999999999999999999888888888999999999999999999764 6778999999998763 45
Q ss_pred HHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccC
Q 009867 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSN 323 (523)
Q Consensus 244 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~ 323 (523)
+++.+. +++.+..+|+++..++..... ..+++.+++||+.+++.+.+.+.+ +|.++++.||+||++...+..
T Consensus 212 ~~~~i~--~~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~ 283 (458)
T PRK09029 212 LEQALA--GCTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAK 283 (458)
T ss_pred HHHHHh--hceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceecc
Confidence 666663 789999999999998866432 247999999999999999998875 499999999999998655433
Q ss_pred CCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCc
Q 009867 324 PLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGY 402 (523)
Q Consensus 324 ~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 402 (523)
.. ....++|+| +++.++++| |||+++|+.++.||+++++.+.....+|||+|||+++++ +|.
T Consensus 284 ~~-----~~~~~~G~~~~~~~~~i~~-----------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~ 346 (458)
T PRK09029 284 RA-----DGLAGVGSPLPGREVKLVD-----------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGE 346 (458)
T ss_pred CC-----CCCCCCCCCCCCCEEEEeC-----------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCE
Confidence 21 123458888 688898876 899999999999999988877665678999999999999 999
Q ss_pred EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCC
Q 009867 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKV 482 (523)
Q Consensus 403 ~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 482 (523)
+++.||.+|++|++|.+++|.+||++|.++++|.+++|++.+++..++.+.++++... ..+.++++++++++|++|++
T Consensus 347 l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~ 424 (458)
T PRK09029 347 LTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQ 424 (458)
T ss_pred EEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhccC
Confidence 9999999999999999999999999999999999999999998888888888888663 35778999999999999999
Q ss_pred CcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 483 PKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 483 p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
|..+++++++|+|.+||++|+.|++++.+..+
T Consensus 425 P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~ 456 (458)
T PRK09029 425 PVAYYLLPPELKNGGIKISRQALKEWVAQQLG 456 (458)
T ss_pred CeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence 99999999999999999999999999886554
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=596.48 Aligned_cols=485 Identities=24% Similarity=0.355 Sum_probs=412.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|.++++++|+++|+.+.+ .++||+||.++++++|+.|++.|+++|++|+++++|+.++++++|||+++|+++
T Consensus 1130 ~~~l~~~~~~~a~~~p~~~Al~~~~-~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691 1130 QAWLPELLNEQARQTPERIALVWDG-GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEECC-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 3579999999999999999999887 599999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++......+... ........+.. .. .......+.....+++
T Consensus 1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~ 1274 (4334)
T PRK05691 1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA------EGVSAIALDSL-----HL---DSWPSQAPGLHLHGDN 1274 (4334)
T ss_pred EecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc------cCceEEeeccc-----cc---cccCCCCCCCCCCCCC
Confidence 9999999999999999999999999987644322110 00000000000 00 0000111112345789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC-CCCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~ 241 (523)
+++++|||||||.||||.++|+++.+.+.+....+++.++++++...|+.|..+... ++.++..|+++++.+. ...++
T Consensus 1275 ~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~~l~i~~~~~~~~~ 1353 (4334)
T PRK05691 1275 LAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWE-CFWPLITGCRLVLAGPGEHRDP 1353 (4334)
T ss_pred eEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHhCCCEEEEcCccccCCH
Confidence 999999999999999999999999999988888899999999999999988777654 8899999999999753 24588
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|++++.+...... ..++++|.+++|||.+++++.+.+.+.+ ++++++.||+||++..+
T Consensus 1354 ~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691 1354 QRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINV 1430 (4334)
T ss_pred HHHHHHHHHcCCeEEECcHHHHHHHHhCccc---ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeee
Confidence 8999999999999999999999999765332 2468999999999999999999999887 78899999999998766
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC--------Ceeee
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFHT 391 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~T 391 (523)
+...... ......++|+| +++.++++|+++++++.|+.|||+|+|++++.||+++++.+++.|.. +||+|
T Consensus 1431 ~~~~~~~-~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrT 1509 (4334)
T PRK05691 1431 THWQCQA-EDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRT 1509 (4334)
T ss_pred eeeeccc-ccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEc
Confidence 5432211 22345679999 68999999999999999999999999999999999999999998832 39999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||++++++||.++++||+|++||++|++|+|.+||.+|.++|+|.+++|+...+. .+..++++++...+...+.+++++
T Consensus 1510 GDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~~l~~ 1588 (4334)
T PRK05691 1510 GDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAERLKA 1588 (4334)
T ss_pred cceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866544 347788888877766667789999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+++++|+.|++|..+++++++|+|++||++|++|.+.
T Consensus 1589 ~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1589 ALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred HHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 9999999999999999999999999999999998653
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=521.78 Aligned_cols=480 Identities=19% Similarity=0.232 Sum_probs=379.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 446 ~~sl~~ll~~~a~~~pd~~Al~~~~-~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~ 524 (994)
T PRK07868 446 RISLGRIIAEQARDAPKGEFLLFDG-RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA 524 (994)
T ss_pred CccHHHHHHHHHHHCCCCeEEEeCC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence 4689999999999999999999876 689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc--------ccccccccccccccc-
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE--------LTLSLAHSESDTNAI- 153 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 153 (523)
+|++|. +++.++++.++++++|++.+........ . .. ++.+...... ...............
T Consensus 525 vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~----~-~~-iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (994)
T PRK07868 525 VLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL----P-GR-VLVLGGGESRDLDLPDDADVIDMEKIDPDAVELP 595 (994)
T ss_pred EEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc----C-ce-EEEecCCccccccCCcchhhhhhhhcCcccccCC
Confidence 999995 6899999999999999987655433221 1 11 1111110000 000000000000000
Q ss_pred ---ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcE
Q 009867 154 ---SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230 (523)
Q Consensus 154 ---~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 230 (523)
......++++++++|| ||||.||++.++|.++..........+++.++|++++.+|++|..++...++.++..|++
T Consensus 596 ~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 596 GWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred cccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 0011235889999998 578888887788877655544555667888999999999999999998767777888888
Q ss_pred EEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC-Cceec
Q 009867 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLE 309 (523)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~v~~ 309 (523)
+++.+ .+++..+++.++++++|+++++|+++..+++..... ...++++|.++ |+.+++++.+++.+.|+ +++++
T Consensus 675 vvl~~--~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~-~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~ 749 (994)
T PRK07868 675 IALSR--GLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV-LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVE 749 (994)
T ss_pred EEecC--CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc-cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheee
Confidence 87776 579999999999999999999999999998764322 23456888765 34599999999999985 88999
Q ss_pred cccccccccccccCCCCCCCCCCCCCcccc-CCc-EEEE-----------ECCCC--CccCCCceeEEEEeCCCcccccC
Q 009867 310 AYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQ-EIAI-----------LDEIG--VPQEGGAKGEVCIRGPNVTKGYK 374 (523)
Q Consensus 310 ~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~i-----------~d~~~--~~~~~g~~Gel~v~~~~~~~gy~ 374 (523)
.||+||++...... .....+++|+| ++. ++++ +|++| +.++.|+.|||+++++..+
T Consensus 750 ~YG~TE~~~~~~~~-----~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~---- 820 (994)
T PRK07868 750 FFATTDGQAVLANV-----SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI---- 820 (994)
T ss_pred eeeccccccccccc-----CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC----
Confidence 99999987543321 12355789999 665 5554 34566 5678899999999997542
Q ss_pred CChhhhh--hhc--cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCc
Q 009867 375 NNPEANK--SAF--LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGE 450 (523)
Q Consensus 375 ~~~~~~~--~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~ 450 (523)
+++.+. ..| .+|||+|||+|++|+||.++|+||.||+||++|.+|+|.+||++|.++|+|.+++|++++++. ++
T Consensus 821 -~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~ 898 (994)
T PRK07868 821 -DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQ 898 (994)
T ss_pred -ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-Cc
Confidence 333322 223 268999999999999999999999999999999999999999999999999999999998775 57
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 451 EINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 451 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
.++++|++.++...+.++|++++++ ++.|++|+.++++++||+|++||++|++|+++-.
T Consensus 899 ~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 899 LAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred eEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 7888898888777788999999986 9999999999999999999999999999986644
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=474.64 Aligned_cols=505 Identities=24% Similarity=0.356 Sum_probs=395.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-----c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-----K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-----~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
.+|+.+.|...+..+|+.+++.... + +.+||+|.++++..+|..|+++|+++++.|+|+.-|++||++...||
T Consensus 74 ~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~ 153 (691)
T KOG1256|consen 74 PLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMAC 153 (691)
T ss_pred cccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHH
Confidence 4789999999999999999997543 2 78899999999999999999999999999999999999999999999
Q ss_pred HHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEec-ccchhHHHHHHhhc---ccccceeeeecCCc-------c---ccc
Q 009867 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTP-AEGNAAAQAAASKL---NISHATATLLDADS-------E---LTL 141 (523)
Q Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~---~~~ 141 (523)
...|+++|||..+++++.+.++++++...+++++ +.....+.+..... .++..+. +.+... . ...
T Consensus 154 ~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~-~~~~~~~~~~~~~~~gv~v~ 232 (691)
T KOG1256|consen 154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQ-LDEPSDELKEKAENNGVEVY 232 (691)
T ss_pred HhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEE-ecCCchhhhhhhhcCCeEEE
Confidence 9999999999999999999999999999999999 44444555544431 2222222 222110 0 012
Q ss_pred cccccccc--cccccc-CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh------ccCCCceEEEEcChh
Q 009867 142 SLAHSESD--TNAISK-LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY------KLTESDSTVIVLPLF 212 (523)
Q Consensus 142 ~~~~~~~~--~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~~~~~p~~ 212 (523)
++.+.... ...... ....++|++.|.|||||||.||||++||+|+.+.+....... .....|+.++.+|+.
T Consensus 233 S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLA 312 (691)
T KOG1256|consen 233 SWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLA 312 (691)
T ss_pred EHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHH
Confidence 22222111 112222 467899999999999999999999999999988654321111 123369999999999
Q ss_pred hHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-------------------
Q 009867 213 HVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------------- 273 (523)
Q Consensus 213 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------------- 273 (523)
|++..+... ..+..|+++.+..+ ++..+.+.+++.+||.+.++|..|+++.+.....
T Consensus 313 Hi~er~~~~-~~~~~G~~IgF~~g---D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k 388 (691)
T KOG1256|consen 313 HIFERVVEL-YTFYIGAKIGFARG---DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK 388 (691)
T ss_pred HHHHHHHHH-hHhhcccEEEEecC---ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999998844 44488999888764 7889999999999999999999998874321110
Q ss_pred --------CC-----------------CCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCC
Q 009867 274 --------PE-----------------PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED 328 (523)
Q Consensus 274 --------~~-----------------~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 328 (523)
.. .....+|.+++|++++++++...++..+|++|+++||+||+++.++....
T Consensus 389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~--- 465 (691)
T KOG1256|consen 389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLP--- 465 (691)
T ss_pred HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccC---
Confidence 00 01258999999999999999999999999999999999999966555542
Q ss_pred CCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCceeeEcCCCcEEE
Q 009867 329 GPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHL 405 (523)
Q Consensus 329 ~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~ 405 (523)
.....+++|.| ++++++++| ++.+.-+.+..|||+++|++++.|||++|+.|++.+ .|||++|||+|+|+++|.+.+
T Consensus 466 ~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~I 545 (691)
T KOG1256|consen 466 GDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKI 545 (691)
T ss_pred CCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEE
Confidence 22377899999 899999999 555556666689999999999999999999999999 899999999999999999999
Q ss_pred eccccccee-cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC----------CH--------
Q 009867 406 VGRIKELIN-RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI----------DE-------- 466 (523)
Q Consensus 406 ~GR~~~~i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------~~-------- 466 (523)
+||+++++| ..|++|.|+.||++..+.+.|.+.+|.+.+.+.+ +++.|++.+.... +.
T Consensus 546 idRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~---LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~ 622 (691)
T KOG1256|consen 546 IDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSF---LVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLD 622 (691)
T ss_pred EecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhc---EEEEEecChhhchhhHHHccCchhHHHHhcChh
Confidence 999999999 8999999999999999999999999988765543 7777777532111 00
Q ss_pred --HHHHHHH-----HhcCcCCCCCcEEEEe------CCcCCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 467 --EEVLRFC-----KKNVAAFKVPKRVFIT------NELPKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 467 --~~l~~~~-----~~~l~~~~~p~~i~~~------~~lp~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
+.++..+ .+.+..++....+.+. +.=-+||+-|..|..+.++|+++|++-|-
T Consensus 623 ~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~ 687 (691)
T KOG1256|consen 623 VKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYK 687 (691)
T ss_pred hHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 1111111 1234455555555553 34457899999999999999999998764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=500.08 Aligned_cols=495 Identities=23% Similarity=0.343 Sum_probs=378.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 75 (523)
+|+.++|.+++..+|+++|+++.+ .+++||+||+++++++|++|.+.| ++||+|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 478999999999999999998632 158999999999999999999999 68999999999999999999999
Q ss_pred HHhcCEEeeCCC---CCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccc-eeeeecCCccccccccccccccc
Q 009867 76 IRARATAAPLNA---AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHA-TATLLDADSELTLSLAHSESDTN 151 (523)
Q Consensus 76 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (523)
+++|++++|+++ ..+.+++.++++.++++++++++...+.+............ .+...+. .... .. .
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~-~ 150 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDL-----LDLD---SP-R 150 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecc-----cccc---cC-C
Confidence 999999999997 55789999999999999999988766554432211110000 0000000 0000 00 0
Q ss_pred ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh-c-----cCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 152 AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-K-----LTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 152 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
.........+++++++|||||||.||+|.++|.++...+......+ . ..+++++++.+|++|..|+...++.++
T Consensus 151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l 230 (578)
T PRK05850 151 GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPI 230 (578)
T ss_pred ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHH
Confidence 0111234568999999999999999999999999988776554322 2 345789999999999999988899999
Q ss_pred hcCcEEEeCCCCC--CChhHHHHHHHhcCccEEeechHHHHHH-HhcccCC--CCCCCCCcceEEeccCCCCHHHHHHHH
Q 009867 226 AAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIV-LDRHVAK--PEPVYPKLRFIRSCSASLAPVILSRLE 300 (523)
Q Consensus 226 ~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l-~~~~~~~--~~~~~~~l~~i~~~g~~~~~~~~~~~~ 300 (523)
+.|+++++.+... .++..+++.+++++++.. .+|.++..+ ....... ....++++|.+++||+++++++.+++.
T Consensus 231 ~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~ 309 (578)
T PRK05850 231 LGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFA 309 (578)
T ss_pred hcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHH
Confidence 9999998876322 268899999999999854 667654433 3221111 122467899999999999999999998
Q ss_pred HHhC------CceeccccccccccccccCCCCCCC----------------------CCCCCCccccCCcEEEEEC-CCC
Q 009867 301 EAFG------APVLEAYAMTEATHLMSSNPLPEDG----------------------PHKPGSVGRPVGQEIAILD-EIG 351 (523)
Q Consensus 301 ~~~~------~~v~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~g~~~~~~~~i~d-~~~ 351 (523)
+.|+ ..+++.||+||++..+......... ......+|.|.+.+++++| +++
T Consensus 310 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~ 389 (578)
T PRK05850 310 DRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTC 389 (578)
T ss_pred HHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCC
Confidence 8773 3688999999987554432211000 0001134555567899999 567
Q ss_pred CccCCCceeEEEEeCCCcccccCCChhhhhhhcc------------CCeeeeCceeeEcCCCcEEEecccccceecCCcc
Q 009867 352 VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------------FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419 (523)
Q Consensus 352 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~ 419 (523)
.+++.|+.|||+++|++++.||+++++.+.+.|. ++||+|||+++++ +|.+++.||.+|+||.+|++
T Consensus 390 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~ 468 (578)
T PRK05850 390 IECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRN 468 (578)
T ss_pred cCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCee
Confidence 8999999999999999999999999999998873 4699999999997 99999999999999999999
Q ss_pred cChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH------HHHHHHHHhcCcC--CCCCcEEEEeC-
Q 009867 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE------EEVLRFCKKNVAA--FKVPKRVFITN- 490 (523)
Q Consensus 420 v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~~~l~~--~~~p~~i~~~~- 490 (523)
|+|.+||++|.+++.+ +++++++++. .++.+.++++++++...+. ..+++.+...+.. +..|..+++++
T Consensus 469 i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~ 546 (578)
T PRK05850 469 HYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLVLVAP 546 (578)
T ss_pred cCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEEEeCC
Confidence 9999999999999985 4777788776 5677888888776543332 3455555554543 23466666664
Q ss_pred -CcCCCCCccccHHHHHHHHHHh
Q 009867 491 -ELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 491 -~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+||+|++||++|+++++.|.+.
T Consensus 547 ~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 547 GSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred CCcCCCCCchHHHHHHHHHHHcC
Confidence 8999999999999999998764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=490.51 Aligned_cols=447 Identities=24% Similarity=0.271 Sum_probs=343.4
Q ss_pred CCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccc------hhHHHHHHhhcccccceeeeecC
Q 009867 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEG------NAAAQAAASKLNISHATATLLDA 135 (523)
Q Consensus 62 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 135 (523)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+...................
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 589999999999999999999999999999999999999999999998643 11222211111111111000000
Q ss_pred Cc-----cccccccccc---c-c----ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCC
Q 009867 136 DS-----ELTLSLAHSE---S-D----TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES 202 (523)
Q Consensus 136 ~~-----~~~~~~~~~~---~-~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~ 202 (523)
.. .....+.... . . ..........++++++++|||||||.||+|.++|.++..........+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00 0000010000 0 0 00011112246899999999999999999999999988766655566788899
Q ss_pred ceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhccc-CCCCCCCCCc
Q 009867 203 DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV-AKPEPVYPKL 281 (523)
Q Consensus 203 ~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~-~~~~~~~~~l 281 (523)
|++++.+|++|..++. .++.++..|+++++.+. .+++..+++.++++++|++.++|+++..|++... .....+++++
T Consensus 161 d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~-~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~L 238 (499)
T PLN03051 161 DVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGG-APLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKL 238 (499)
T ss_pred CEEEEccCcceeeehH-HHHHHHHcCCEEEecCC-CCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhh
Confidence 9999999999998875 48889999999988763 3577899999999999999999999999987542 1122346899
Q ss_pred ceEEeccCCCCHHHHHHHHHHh--CCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCC-
Q 009867 282 RFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGG- 357 (523)
Q Consensus 282 ~~i~~~g~~~~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g- 357 (523)
|.++++|++++++..+++.+.+ ++.+++.||+||++..+..... ......+++|+| ++++++++|++|++++.|
T Consensus 239 r~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~ 316 (499)
T PLN03051 239 RVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL--LQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQ 316 (499)
T ss_pred eEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc--cCCCCCccccCCCCCceEEEECCCCCCCCCCC
Confidence 9999999999999998777643 4789999999998754332211 112245688999 799999999999999988
Q ss_pred -ceeEEEEeCCCc--ccccCCChhhhhhhccCC----------eeeeCceeeEcCCCcEEEecccccceecCCcccChHH
Q 009867 358 -AKGEVCIRGPNV--TKGYKNNPEANKSAFLFG----------WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIE 424 (523)
Q Consensus 358 -~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~~----------~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ 424 (523)
+.|||+++||.+ +.||++++. +. .+.+| ||+|||+|++|+||++++.||.||+||++|++|+|.|
T Consensus 317 ~~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~E 394 (499)
T PLN03051 317 PCVGEVALAPPMLGASDRLLNADH-DK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVE 394 (499)
T ss_pred CcceEEEEecCcCCCCccccCCcc-cc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHH
Confidence 589999999976 579997653 32 33344 7999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceeeEEEeecCCCCC-ceeEEEE---EeCCCC-CCCHHHHHHHH----HhcCcCCCCCcEEEEeCCcCC
Q 009867 425 VDAVLLS-HPDIAQAVAFGVPDDKYG-EEINCAI---IPREGS-NIDEEEVLRFC----KKNVAAFKVPKRVFITNELPK 494 (523)
Q Consensus 425 ie~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~-~~~~~~l~~~~----~~~l~~~~~p~~i~~~~~lp~ 494 (523)
||++|.+ ||+|.+++|++++++..+ +.+.++| +++++. ..+.+++++++ +++|+++..|..++++++||+
T Consensus 395 IE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~ 474 (499)
T PLN03051 395 IERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPR 474 (499)
T ss_pred HHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCC
Confidence 9999986 999999999999998888 5777887 666654 35566676665 455777666778999999999
Q ss_pred CCCccccHHHHHHHHHHhhh
Q 009867 495 TASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 495 t~~GK~~r~~l~~~~~~~~~ 514 (523)
|++||++|++|++.+.+.+.
T Consensus 475 t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 475 NASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred CCCccHHHHHHHHHHHHhhc
Confidence 99999999999998877665
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-60 Score=471.84 Aligned_cols=434 Identities=30% Similarity=0.460 Sum_probs=365.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEeccc
Q 009867 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE 111 (523)
Q Consensus 32 Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 111 (523)
||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.++++..+++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH
Q 009867 112 GNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS 191 (523)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~ 191 (523)
...... .. ..... .. ...............+++++++|||||||.||+|.++|.++...+.
T Consensus 81 ~~~~~~--------~~--~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~ 141 (436)
T TIGR01923 81 LEEKDF--------QA--DSLDR----IE-----AAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAV 141 (436)
T ss_pred ccccce--------ee--cchHh----hh-----hcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHH
Confidence 421100 00 00000 00 0000000111234567899999999999999999999999999888
Q ss_pred HHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhccc
Q 009867 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV 271 (523)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 271 (523)
.....+++.++|+++..+|++|..++.. ++.++..|+++++.+. ...+++.++++++|++.++|+++..+++...
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~----~~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~ 216 (436)
T TIGR01923 142 GSKENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDK----FNQLLEMIANERVTHISLVPTQLNRLLDEGG 216 (436)
T ss_pred HHHhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecch----HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcC
Confidence 8888889999999999999999988864 8899999999999763 2489999999999999999999999987643
Q ss_pred CCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEE-ECC
Q 009867 272 AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAI-LDE 349 (523)
Q Consensus 272 ~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i-~d~ 349 (523)
.. ++++.++++|+++++++.+.+.. +++.+++.||+||++..++...... .....++|.| +++++++ .|+
T Consensus 217 ~~-----~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~~~~ 288 (436)
T TIGR01923 217 HN-----ENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEM--LHARPDVGRPLAGREIKIKVDN 288 (436)
T ss_pred CC-----CceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccc--cccccCCCccCCCcEEEEEeCC
Confidence 21 68999999999999999998875 5999999999999987665443221 1122247888 6788888 443
Q ss_pred CCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHH
Q 009867 350 IGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429 (523)
Q Consensus 350 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l 429 (523)
. ++.|||+++|+.++.||++++..+...+.++||+|||+++++.+|.+++.||.+|++|++|+++++.+||+++
T Consensus 289 ~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l 362 (436)
T TIGR01923 289 K------EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVL 362 (436)
T ss_pred C------CCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHH
Confidence 2 3789999999999999999888877777789999999999999999999999999999999999999999999
Q ss_pred hcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHH
Q 009867 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIV 505 (523)
Q Consensus 430 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l 505 (523)
.+++.|.++++++.++...+..+.++++...+ .+.+++.+++++.++.+++|..+++++++|+|++||++|++|
T Consensus 363 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 363 YQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred HhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 99999999999998877767777788877643 577899999999999999999999999999999999999864
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=436.64 Aligned_cols=495 Identities=24% Similarity=0.322 Sum_probs=403.8
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
+..|+.++|.++++++|+++|+++.+. +++||+|+.+.++++|+.|...|++.||.||++|+|.+|++.+.|+++++|+
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv 154 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGV 154 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCc
Confidence 357999999999999999999998763 6999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeec-CCcc-ccccccccccc--ccc---c
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLD-ADSE-LTLSLAHSESD--TNA---I 153 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~---~ 153 (523)
+...||.++..+.+.|.+..++++++|++.+....+.+..+.+..........+ .... ..-++....+. ..+ .
T Consensus 155 ~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~vp~~ 234 (649)
T KOG1179|consen 155 ITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPVPVS 234 (649)
T ss_pred eeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCCCcc
Confidence 999999999999999999999999999999988776666333322211111111 1100 01111111111 111 2
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
.....+..++++.+|||||||.||+.+++|.........+...++++++|+++..+|++|..|.+.++..++..|+|+++
T Consensus 235 ~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl 314 (649)
T KOG1179|consen 235 TRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL 314 (649)
T ss_pred cCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence 22344677899999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCc-eecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~-v~~~yG 312 (523)
-. .++...+|+.+.+|++|+......+++.|++.+....+. .-+.-+.-|..+.+++++.+.+.||.. +.+.||
T Consensus 315 rk--KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er---~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~Yg 389 (649)
T KOG1179|consen 315 RK--KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER---QHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYG 389 (649)
T ss_pred ec--ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc---CceEEEEecCCCCchHHHHHHHHcCCCeEEEEec
Confidence 88 899999999999999999999999999999987765532 333445668899999999999999876 899999
Q ss_pred ccccccccccCCCCCCCCCCCCCccccC-------CcEEEEEC-CCCC----------ccCCCceeEEEEeC----C-Cc
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRPV-------GQEIAILD-EIGV----------PQEGGAKGEVCIRG----P-NV 369 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~i~d-~~~~----------~~~~g~~Gel~v~~----~-~~ 369 (523)
+||...-..... ...+.+|+.+ ..++--+| ++|. ++++||.|.|+-+= | .-
T Consensus 390 aTEgn~~~~N~d------~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~ 463 (649)
T KOG1179|consen 390 ATEGNSNLVNYD------GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRS 463 (649)
T ss_pred cccCcceeeeec------CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhh
Confidence 999764433221 2334444431 23333333 4444 46789999775443 1 23
Q ss_pred ccccCCChhhhhhhc-----c--CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEe
Q 009867 370 TKGYKNNPEANKSAF-----L--FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFG 442 (523)
Q Consensus 370 ~~gy~~~~~~~~~~~-----~--~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~ 442 (523)
|.||.+..+.++... . |-||.|||+-.+|..|++||..|..|.+.+.|++|+..|+|++|....+++|+.|+|
T Consensus 464 F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYG 543 (649)
T KOG1179|consen 464 FLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYG 543 (649)
T ss_pred hccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEE
Confidence 789999776666553 2 339999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeE-EEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 443 VPDDKYGEEIN-CAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 443 ~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+.-++.+.+.- +.++..+....+.+.+-++++..||+|.+|..+.+.+++++|.+-|..+..|.+
T Consensus 544 V~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~ 609 (649)
T KOG1179|consen 544 VTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQK 609 (649)
T ss_pred EecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHH
Confidence 99888776654 445568888889999999999999999999999999999999999999976654
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=482.69 Aligned_cols=491 Identities=24% Similarity=0.292 Sum_probs=383.6
Q ss_pred CHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
++.+.|...|...|+.+++...++ ..+||.||+++++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 588999999999999999976654 6899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHH-------HHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccC
Q 009867 84 PLNAAYTPDEF-------EFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKL 156 (523)
Q Consensus 84 ~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (523)
++++..+.+++ .++++.++++.+++++.......... ..... .. .+.+...... ....
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~--~~-----------~~~~l~~~~~-~~~~ 147 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-EKGIR--VL-----------TVADLLAADP-IDPV 147 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-ccCCc--ee-----------ehhhhcccCC-CCcC
Confidence 99998776544 55677789999999876443222111 00100 00 0000000000 1122
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCC-ceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTES-DSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
...++++++++|||||||.||+|.++|+++..........+++.++ |++++.+|++|..++...++.++..|+++++..
T Consensus 148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 3457899999999999999999999999999888877777888776 899999999999999877888899999988765
Q ss_pred CCC--CChhHHHHHHHhcCccEEeechHHHHHHHhcccC---CCCCCCCCcceEEeccCCCCHHHHHHHHHH---hCC--
Q 009867 236 AGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA---KPEPVYPKLRFIRSCSASLAPVILSRLEEA---FGA-- 305 (523)
Q Consensus 236 ~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~---~~~-- 305 (523)
... .++..+++.+++++++++...|..+..+...... ....+++++|.++++|++++++..+.+.+. +|.
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 307 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP 307 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence 322 2677888999999999988777777666543211 112457899999999999999999998874 555
Q ss_pred -ceeccccccccccccccCCCCCC-----------------------CCCCCCCcccc-CCcEEEEECCCCCccCCCcee
Q 009867 306 -PVLEAYAMTEATHLMSSNPLPED-----------------------GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKG 360 (523)
Q Consensus 306 -~v~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~G 360 (523)
.+++.||+||++..+........ ......++|+| ++.+++++|+++.+++.|+.|
T Consensus 308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~G 387 (545)
T PRK07768 308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVG 387 (545)
T ss_pred ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEE
Confidence 48999999999876543321100 01123468888 789999999999999999999
Q ss_pred EEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEE
Q 009867 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVA 440 (523)
Q Consensus 361 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 440 (523)
||+++|+.++.||++.+........+|||+|||+++++++|.++++||.+|+++.+|+++++.+||+.+.++++|.+++|
T Consensus 388 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 467 (545)
T PRK07768 388 VIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNA 467 (545)
T ss_pred EEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceE
Confidence 99999999999999866555544567899999999999999999999999999999999999999999999999999877
Q ss_pred EeecC--CCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcCcCC--CCCcEEEEeC--CcCCCCCccccHHHHHHHHH
Q 009867 441 FGVPD--DKYGEEINCAIIPREGSN-IDEEEVLRFCKKNVAAF--KVPKRVFITN--ELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 441 ~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~l~~~--~~p~~i~~~~--~lp~t~~GK~~r~~l~~~~~ 510 (523)
++... ...++.+.+++....... ....++.+.+++.+..+ .+|..+.+++ +||+|++||++|+.++++|+
T Consensus 468 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 468 VAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred EEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 76543 333444555554433211 12245677777776544 5788888886 89999999999999999875
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-58 Score=453.38 Aligned_cols=405 Identities=19% Similarity=0.310 Sum_probs=352.4
Q ss_pred EEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCC
Q 009867 23 LSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSE 102 (523)
Q Consensus 23 ~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 102 (523)
+++.+ +++||+||.++++++|..|. .|+++|++|+++++|+.+++++++||+++|++++|+++..+.+.+..+++.++
T Consensus 2 ~~~~~-~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 2 LIVND-EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred eEecC-ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 45555 69999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeec
Q 009867 103 SKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLT 182 (523)
Q Consensus 103 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s 182 (523)
++++++++.... . .. .....++++++++|||||||.||+|.++
T Consensus 80 ~~~~i~~~~~~~----------~-------~~--------------------~~~~~~~~~~~i~~TSGtTG~PKgv~~s 122 (414)
T PRK08308 80 CHGLLYGESDFT----------K-------LE--------------------AVNYLAEEPSLLQYSSGTTGEPKLIRRS 122 (414)
T ss_pred CCEEEecCcccc----------c-------cc--------------------CCCCCCCCceEEEECCCCCCCCcEEEEe
Confidence 999998763110 0 00 0012467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHH
Q 009867 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTI 262 (523)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~ 262 (523)
|+++...+..+...+.+..+++.+...|++|.+|+...++.++..|+++++.+ ..++..+++.+++++++.++++|++
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~ 200 (414)
T PRK08308 123 WTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT--NKNPKFALNILRNTPQHILYAVPLM 200 (414)
T ss_pred hHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC--CCCHHHHHHHHHHhCCeEEEcCHHH
Confidence 99999988888888888899999999999999999888999999999998876 5688999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCCcccc-CC
Q 009867 263 HQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VG 341 (523)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~ 341 (523)
+..+.+.... ...++.++++|+.+++++.+.+++. +.++++.||+||++.+..... .....++|+| ++
T Consensus 201 ~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-----~~~~~~~G~p~~~ 269 (414)
T PRK08308 201 LHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD-----MKSHLDLGNPLPH 269 (414)
T ss_pred HHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC-----CCCCCccCccCCC
Confidence 9999876432 1368889999999999999999876 678999999999985443221 1244678998 78
Q ss_pred cEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccceecCCcccC
Q 009867 342 QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421 (523)
Q Consensus 342 ~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~ 421 (523)
+++++.+. .++.||+++++. ++||+|||+++++++|.+++.||.++++|.+|++++
T Consensus 270 ~~~~~~~~------~~~~gel~v~~~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~ 325 (414)
T PRK08308 270 VSVSAGSD------ENAPEEIVVKMG------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVY 325 (414)
T ss_pred eEEEEecC------CCCCceEEEEcC------------------CceEECCceEEECCCccEEEecccCCeEEECCEEEC
Confidence 88888753 356799999852 479999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCcccc
Q 009867 422 PIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQ 501 (523)
Q Consensus 422 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~ 501 (523)
|.+||+++.++++|.+++|++.+++..++.+.++++... ..+.++++++++++|+.+++|..+++++++|+|++||++
T Consensus 326 p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~ 403 (414)
T PRK08308 326 PIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVS 403 (414)
T ss_pred HHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCee
Confidence 999999999999999999999988887888888887654 467889999999999999999999999999999999999
Q ss_pred HHHH
Q 009867 502 RRIV 505 (523)
Q Consensus 502 r~~l 505 (523)
|+.|
T Consensus 404 r~~~ 407 (414)
T PRK08308 404 RKLL 407 (414)
T ss_pred hhhh
Confidence 9954
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-59 Score=430.12 Aligned_cols=509 Identities=26% Similarity=0.384 Sum_probs=400.2
Q ss_pred CCHHHHHHHHHhhcCCceeEEEC-----------Cc-----------ccccHHHHHHHHHHHHHHHHHcCCCCCCE-EEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVS-----------GK-----------FDLTYSRIHELVERAASRLVAAGINAGDV-VAL 60 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~-V~i 60 (523)
.|+.+++.+.++++.++.++.+. ++ ..+||.|+.+++.++|++|.+.|++|+++ ++|
T Consensus 41 ~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~i 120 (678)
T KOG1180|consen 41 STLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAI 120 (678)
T ss_pred ccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 58999999999999999999542 11 56799999999999999999999998877 999
Q ss_pred ECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC----
Q 009867 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD---- 136 (523)
Q Consensus 61 ~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 136 (523)
+++.+.+|+.+++||++.+..+|.+..++..+.+.|-|++++++.++++.+.++.+............++.....+
T Consensus 121 Fa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~ 200 (678)
T KOG1180|consen 121 FAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAA 200 (678)
T ss_pred EecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999887766554443222222222111
Q ss_pred -ccc---------ccccccc--cccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh-ccCCCc
Q 009867 137 -SEL---------TLSLAHS--ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-KLTESD 203 (523)
Q Consensus 137 -~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~ 203 (523)
+.. ..++.+. .......++....++|+++|+|||||||.||||+++|.|+++.+....... .+.+.|
T Consensus 201 ~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D 280 (678)
T KOG1180|consen 201 KDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKD 280 (678)
T ss_pred hhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCc
Confidence 000 0011111 111111234445789999999999999999999999999999988776665 588999
Q ss_pred eEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC------hhHHHHHHHhcCccEEeechHHHHHHHhcccCC----
Q 009867 204 STVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS------ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK---- 273 (523)
Q Consensus 204 ~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---- 273 (523)
+.+..+|+.|+..+.+ =+.++..|+++-..+...+. ....--.+..+|||.+.++|..++++...-...
T Consensus 281 ~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~ 359 (678)
T KOG1180|consen 281 RYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAM 359 (678)
T ss_pred eEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhc
Confidence 9999999999999988 66778888887775532221 112223456789999999999998874421111
Q ss_pred -------------------------------------CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccc
Q 009867 274 -------------------------------------PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316 (523)
Q Consensus 274 -------------------------------------~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~ 316 (523)
+...-..+|.+++||.+++++..+.+...+.|++.++||.||+
T Consensus 360 ~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEt 439 (678)
T KOG1180|consen 360 PGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTET 439 (678)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccch
Confidence 0011248999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCC--ceeEEEEeCCCcccccCCChhhhhhhc-c-CC--e
Q 009867 317 THLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGG--AKGEVCIRGPNVTKGYKNNPEANKSAF-L-FG--W 388 (523)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~-~-~~--~ 388 (523)
+..++.... .....+.+|.| +..+++++| ++|.--..+ ..||||++|++++.||+++++.|.+.| . +| |
T Consensus 440 ca~~tv~e~---~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~W 516 (678)
T KOG1180|consen 440 CAAATVLEP---EDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRW 516 (678)
T ss_pred hcccEecCh---hhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEE
Confidence 877776543 44566789999 567899999 555333333 489999999999999999999999999 3 78 9
Q ss_pred eeeCceeeEcCCCcEEEeccccccee-cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC-----
Q 009867 389 FHTGDIGYFDSDGYLHLVGRIKELIN-RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS----- 462 (523)
Q Consensus 389 ~~TGD~~~~~~~g~~~~~GR~~~~i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----- 462 (523)
|+|||+|++.+||.+.++.|++|.+| .+|+.|.+.-+|.+++..|-|...+|+..+... .++++|++.++.
T Consensus 517 F~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~lt~lA 593 (678)
T KOG1180|consen 517 FRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS---KPVAIVVPNQKHLTKLA 593 (678)
T ss_pred EeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc---eeEEEEcCCchHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999765443 377888877531
Q ss_pred ---CCCH---------H--------HHHHHH-HhcCcCCCCCcEEEEeCC------cCCCCCccccHHHHHHHHHHhhhh
Q 009867 463 ---NIDE---------E--------EVLRFC-KKNVAAFKVPKRVFITNE------LPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 463 ---~~~~---------~--------~l~~~~-~~~l~~~~~p~~i~~~~~------lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.... . +|.++- .+.|...++|..|++.++ =-.|..-|+.|+.+++.|.++++.
T Consensus 594 ~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~ 673 (678)
T KOG1180|consen 594 EKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDR 673 (678)
T ss_pred HHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHH
Confidence 1111 1 122222 346888999999988764 224567799999999999999998
Q ss_pred hcCC
Q 009867 516 AKVP 519 (523)
Q Consensus 516 ~~~~ 519 (523)
.|..
T Consensus 674 ~Y~~ 677 (678)
T KOG1180|consen 674 LYKE 677 (678)
T ss_pred Hhcc
Confidence 8754
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=449.10 Aligned_cols=401 Identities=35% Similarity=0.593 Sum_probs=316.1
Q ss_pred HHHHHhhcCCceeEEE-CCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCC
Q 009867 10 LNQVIDQFSSKRALSV-SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA 88 (523)
Q Consensus 10 l~~~a~~~p~~~a~~~-~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~ 88 (523)
|+++|+++|+++|+++ .+ +.+||+||+++++++|..|.++|+++||+|+++++|+++++++++||+++|++++|++|.
T Consensus 1 f~~~a~~~pd~~a~~~~~~-~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~ 79 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEG-RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS 79 (417)
T ss_dssp HHHHHHHSTTSEEEEETTT-EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ChhHHhhCCCceEEEECCC-EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence 6789999999999999 55 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEe----cccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCC-CCCCCe
Q 009867 89 YTPDEFEFYLSDSESKLLLT----PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLT-NDPSDV 163 (523)
Q Consensus 89 ~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 163 (523)
++.+++.++++.++++++++ +......+...............+ +.................... .. ..++++
T Consensus 80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (417)
T PF00501_consen 80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIIL-DRDDLPKKEALKSASLSDEPQ-SPEDSPDDP 157 (417)
T ss_dssp SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEE-SHSSCTTCHHHHHHHHCHCSH-STTHTTTSE
T ss_pred cccccccccccccceeEEEEeccccccccccchhhhcccccccccccc-ccccccccccccccccccccc-cCCCCccce
Confidence 99999999999999999997 111111111222111111111111 111100000000000000000 00 056899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHH--HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC-C
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIK--SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF-S 240 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~-~ 240 (523)
++++|||||||.||+|.++|+++.+.+..+. ...+++ |++++.+|++|.+|+...++.++..|+++++++.... +
T Consensus 158 ~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 235 (417)
T PF00501_consen 158 AFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFD 235 (417)
T ss_dssp EEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHH
T ss_pred eEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998887764 222233 6999999999999997779999999999999874221 2
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCC---CCCCCCCcceEEeccCCCCHHHHHHHHHHhCC-ceecccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK---PEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEA 316 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~tE~ 316 (523)
++.+++.++++++|+++++|++++.+++..... ....++++|.++++|+++++++.+++++.++. ++++.||+||+
T Consensus 236 ~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~ 315 (417)
T PF00501_consen 236 PESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTET 315 (417)
T ss_dssp HHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGG
T ss_pred cccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceeccccccc
Confidence 466899999999999999999999999843222 12357889999999999999999999999987 89999999999
Q ss_pred ccccccCCCCCCCCCCCCCcccc-CCcEEEEECCC-CCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-CeeeeCc
Q 009867 317 THLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGD 393 (523)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~~~TGD 393 (523)
+.+++... ........+++|+| ++++++++|++ +++++.|+.|||+++|++++.||+++++.+...|.+ |||+|||
T Consensus 316 ~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 394 (417)
T PF00501_consen 316 GSIATIRP-PEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGD 394 (417)
T ss_dssp SSEEEEEE-TTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEE
T ss_pred ceeeeccc-ccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecce
Confidence 99887552 11122356779999 79999999965 999999999999999999999999999999999976 8999999
Q ss_pred eeeEcCCCcEEEecccccceecC
Q 009867 394 IGYFDSDGYLHLVGRIKELINRG 416 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~ 416 (523)
+|++|++|.++++||.+|+||++
T Consensus 395 ~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 395 LGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEETTSEEEEEEEGSCEEEET
T ss_pred EEEECCCCeEEEEEeeCCEEEeC
Confidence 99999999999999999999864
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=419.10 Aligned_cols=393 Identities=28% Similarity=0.441 Sum_probs=328.4
Q ss_pred cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecc
Q 009867 32 TYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPA 110 (523)
Q Consensus 32 Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 110 (523)
||.||.+.++++|+.|.+ .|+++||+|+++++|+.+++++++||+++|++++|+++.++.+.+.++++.++++.++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999999 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHH
Q 009867 111 EGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV 190 (523)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~ 190 (523)
........... .. . ........ ... ..............+++++++|||||||.||+|.++|+++....
T Consensus 81 ~~~~~~~~~~~----~~--~-~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~ 149 (408)
T TIGR01733 81 ALASRLAGLVL----PI--I-LVDPLELA---ALD-DAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL 149 (408)
T ss_pred chhhhccccCC----ce--E-Eechhhhh---hcc-cccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHH
Confidence 76543322110 00 0 00000000 000 00000111111457899999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC-ChhHHHHHHHhcCccEEeechHHHHHHHhc
Q 009867 191 SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDR 269 (523)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 269 (523)
..+...+.+.+++++++..|++|..++.. ++.++..|+++++.+.... .+..+.+.++++++|.+.++|.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~ 228 (408)
T TIGR01733 150 AWLARRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAA 228 (408)
T ss_pred HHHHHhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHh
Confidence 88888889999999999999999988765 8999999999988775333 367888888999999999999999999887
Q ss_pred ccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC-CceeccccccccccccccCCCCCCCCC--CCCCcccc-CCcEEE
Q 009867 270 HVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPH--KPGSVGRP-VGQEIA 345 (523)
Q Consensus 270 ~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~--~~~~~g~~-~~~~~~ 345 (523)
.. ..++++|.++++|+.+++++.+.+.+.++ +.+++.||+||++.++........... ...++|.| ++.+++
T Consensus 229 ~~----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 304 (408)
T TIGR01733 229 LP----PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLY 304 (408)
T ss_pred hh----hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEE
Confidence 54 34689999999999999999999999997 899999999999987754332222222 26778988 789999
Q ss_pred EECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-------C--eeeeCceeeEcCCCcEEEecccccceecC
Q 009867 346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------G--WFHTGDIGYFDSDGYLHLVGRIKELINRG 416 (523)
Q Consensus 346 i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~ 416 (523)
++|+++.+++.|+.|||++++++++.||+++++.+...|.. | ||+|||+++++++|.+++.||.+|+++.+
T Consensus 305 i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~ 384 (408)
T TIGR01733 305 VLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIR 384 (408)
T ss_pred EECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeC
Confidence 99988999999999999999999999999999988877733 2 99999999999999999999999999999
Q ss_pred CcccChHHHHHHHhcCCCceeeEE
Q 009867 417 GEKISPIEVDAVLLSHPDIAQAVA 440 (523)
Q Consensus 417 G~~v~~~~ie~~l~~~~~v~~~~v 440 (523)
|++++|.+||+.+.+++.|.+++|
T Consensus 385 G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 385 GYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred eEEechHHHHHHHhcCcchhhhcC
Confidence 999999999999999999998764
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=367.17 Aligned_cols=324 Identities=27% Similarity=0.467 Sum_probs=274.7
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
....++++++++|||||||.||+|.++|.++..........+ ...++++..+|++|..++.. ++.++..|++.++..
T Consensus 30 ~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~ 106 (358)
T PRK07824 30 GEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELD 106 (358)
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecC
Confidence 345578999999999999999999999999988777655543 35578899999999999865 677888888877632
Q ss_pred -CCCCChhHHHHHHHhcC--ccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 236 -AGRFSASTFWQDMIKYN--ATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 236 -~~~~~~~~~~~~i~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
...+++..+++.+++++ .++...+|..+..++...... ..+++++.++++|+.+++++.+.+.+ +++++++.||
T Consensus 107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~--~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG 183 (358)
T PRK07824 107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT--AALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYG 183 (358)
T ss_pred cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc--CCcccceEEEECCCCCCHHHHHHHHh-cCCcEEeccc
Confidence 22568899999999998 566677898887776543322 34689999999999999999998875 5999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeee
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT 391 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 391 (523)
+||++..+. ..|.| +++++++.| |||+++|+.++.||++++..+. ...+|||+|
T Consensus 184 ~TE~~~~~~-------------~~G~~~~g~~v~i~~-----------Gei~v~g~~~~~gY~~~~~~~~-~~~~g~~~T 238 (358)
T PRK07824 184 MSETSGGCV-------------YDGVPLDGVRVRVED-----------GRIALGGPTLAKGYRNPVDPDP-FAEPGWFRT 238 (358)
T ss_pred CCccCCCcC-------------cCceeCCCCEEEecC-----------CEEEEecCccccccCCCccccc-ccCCCceec
Confidence 999875432 13666 677888744 8999999999999999876432 225789999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||++++ .+|.+++.||.+|+||.+|++|+|.+||.+|.++|+|.+++|++.+++..++.++++++...+.....+++++
T Consensus 239 GDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~ 317 (358)
T PRK07824 239 DDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRA 317 (358)
T ss_pred ccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHH
Confidence 999999 8999999999999999999999999999999999999999999999888888888888877766678899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++.|+.+++|..++++++||+|++||++|++|+++|.+
T Consensus 318 ~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 318 HVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred HHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 9999999999999999999999999999999999999865
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=394.99 Aligned_cols=469 Identities=17% Similarity=0.190 Sum_probs=341.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEEC--Cc--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVS--GK--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~--~~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
..|+.++|.+.++++|+++|+... .+ +.+||+|+.++++++|++|.++|+++||+|+|+++|+++|+++.+||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 468999999999999999999742 22 57999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecC---Cc-c-------ccccccccc
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDA---DS-E-------LTLSLAHSE 147 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------~~~~~~~~~ 147 (523)
|++++|+.+ +.+++.+++++++++++|++.+....+...... .++..++. ... .. . ....+.+..
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~-~Lr~IIv~-d~~~~~~~~~~~~~~~i~~~s~~~ll 581 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSR-KLETVVYT-HSFYDEDDHAVARDLNITLIPYEFVE 581 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhccc-CCcEEEEE-CCCcccccccccccCCcceeeHHHHH
Confidence 999999975 467899999999999999997776655543322 33333322 110 00 0 000111110
Q ss_pred c--c-ccccccCCCCCCCeEEEEE---eeCCCCCCcceeechHHHHHHHHHHHHHh---ccCCCceEEEEcChhhHHHHH
Q 009867 148 S--D-TNAISKLTNDPSDVALFLH---TSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGML 218 (523)
Q Consensus 148 ~--~-~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~ 218 (523)
. . ..........++|++.++| ||||||.||||++||+++++.+....... ...++|+.++.+|++|+++..
T Consensus 582 ~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~ 661 (1452)
T PTZ00297 582 QKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV 661 (1452)
T ss_pred hcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH
Confidence 0 0 0111122336788998886 99999999999999999999888765432 356789999999999999965
Q ss_pred HHHHHhhhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC------------------------
Q 009867 219 AGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP------------------------ 274 (523)
Q Consensus 219 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~------------------------ 274 (523)
. .+.++..|+++.. +++..+++.+++++||+++++|.+++++........
T Consensus 662 ~-~~~~l~~G~~I~~-----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~ 735 (1452)
T PTZ00297 662 F-VLGLFAHGSAVAT-----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINI 735 (1452)
T ss_pred H-HHHHHHcCCEEEe-----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 5 6777899998864 357899999999999999999999998754321110
Q ss_pred -CC----------------CCCCcceEEeccC--CCCHHHHHHHHHHhCCceeccccccccccccccCCCCCCCCCCCCC
Q 009867 275 -EP----------------VYPKLRFIRSCSA--SLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGS 335 (523)
Q Consensus 275 -~~----------------~~~~l~~i~~~g~--~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~ 335 (523)
.. .-..+|.+++||. .++..+.. +.+++..||+||.. +.+.. . .. ..
T Consensus 736 g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~-~--~~--~~ 801 (1452)
T PTZ00297 736 HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSE-G--VF--CV 801 (1452)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCC-C--Cc--cc
Confidence 00 0146777777762 33322222 46678899999943 22221 1 11 12
Q ss_pred cccc-CCcEEEEEC--CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCCCcEEEecccccc
Q 009867 336 VGRP-VGQEIAILD--EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL 412 (523)
Q Consensus 336 ~g~~-~~~~~~i~d--~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~ 412 (523)
.|.| +++++++.| +.+. .+..|||++++ +++|+.|++. .+||+ +||.++++||++|+
T Consensus 802 ~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~IidRkKdl 861 (1452)
T PTZ00297 802 DGTPAPSLQVDLEPFDEPSD---GAGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRLLGPPLGI 861 (1452)
T ss_pred CCeecCceEEEEcccccccC---CCCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEEEeccccc
Confidence 3899 899999986 2222 13469999964 5788888863 35554 69999999999999
Q ss_pred ee-cCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCC-----------C--------CCHHH----
Q 009867 413 IN-RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGS-----------N--------IDEEE---- 468 (523)
Q Consensus 413 i~-~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------~--------~~~~~---- 468 (523)
|| .+|++|.|..||+.+..+|.|.+++|++.+.+. +++.|++.... . .+.++
T Consensus 862 ikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~ 937 (1452)
T PTZ00297 862 LLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAY 937 (1452)
T ss_pred eECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHh
Confidence 99 999999999999999999999999999875443 56666654210 0 11122
Q ss_pred ----HHHHH---H--hcCcCCCCCcEEEEeC-Cc-----CCCCCccccHHHHHHHHHHhhhhhcCC
Q 009867 469 ----VLRFC---K--KNVAAFKVPKRVFITN-EL-----PKTASGKIQRRIVSEHFLAQVSAAKVP 519 (523)
Q Consensus 469 ----l~~~~---~--~~l~~~~~p~~i~~~~-~l-----p~t~~GK~~r~~l~~~~~~~~~~~~~~ 519 (523)
+++.+ . ..+..+++++.+.+++ ++ -+||+.|+.|+.+.++|.++|++.|..
T Consensus 938 ~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~ 1003 (1452)
T PTZ00297 938 ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSD 1003 (1452)
T ss_pred HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcc
Confidence 22222 1 2255677887766653 34 589999999999999999999987764
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=346.15 Aligned_cols=410 Identities=26% Similarity=0.344 Sum_probs=336.1
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
.++++.|.+.+.+.|++.|+...+ .++||+||..+++++|..|.+.|++++++|+++++++.++++.++|++++|..++
T Consensus 227 ~~i~~~f~~~a~~~p~~~a~~~~~-~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv 305 (642)
T COG1020 227 LTIHLLFEEQAATTPDAVALVRGG-QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV 305 (642)
T ss_pred chHHHHHHHHHHhCCCceeEecCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence 579999999999999999998875 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|++|.++.+.+.++++.++++.+++........... .. ..... ................+++.
T Consensus 306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~ 368 (642)
T COG1020 306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL----PG----LALDD---------ALSEIPDTDPIPQALLGDAL 368 (642)
T ss_pred cCCCCChHHHHHHHHhhcCccEEEeccccccccccC----Cc----ccccc---------ccccCCccCcccccCCCCCe
Confidence 999999999999999999999999883322110000 00 00000 00000000000223456899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCChh
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSAS 242 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~~~ 242 (523)
++++|||||||.||||..+|+++.+.+.+....+.+...|+++...++... .....++.++..|+++++.... ..++.
T Consensus 369 ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD-~~~~~~f~~l~~G~~l~~~~~~~~~~~~ 447 (642)
T COG1020 369 AYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFD-ASVFEIFGALLEGARLVLAPALLQVDPA 447 (642)
T ss_pred EEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccc-hhHHHHHHHHhCCCEEEecCccccCCHH
Confidence 999999999999999999999999988887777899999988888887333 3445589999999998886643 34788
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHh--CCceeccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAMTEATHL 319 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~--~~~v~~~yG~tE~~~~ 319 (523)
.+.+.+.++++|.+..+|.++..++...... .......++.+.++|+.+++.+...+.... ...+.+.||+||+...
T Consensus 448 ~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~ 527 (642)
T COG1020 448 ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD 527 (642)
T ss_pred HHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhh
Confidence 9999999999999999999999998762221 111233599999999999999999888766 4679999999997665
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCC-eeeeCceeeE
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG-WFHTGDIGYF 397 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-~~~TGD~~~~ 397 (523)
............ ...+|+| .+..++++|+.+++++.|..||+++.|.++..||+++++.+++.|... +|+|||++++
T Consensus 528 ~~~~~~~~~~~~-~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~ 606 (642)
T COG1020 528 APSFPISAELES-RVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARP 606 (642)
T ss_pred eeeEEcccccCC-CCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeE
Confidence 554433222222 4578999 678999999999999999999999999999999999999999999775 9999999999
Q ss_pred cCCCcEEEecccccceecCCcccChHHHHHHHhcCC
Q 009867 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHP 433 (523)
Q Consensus 398 ~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~ 433 (523)
..+|.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus 607 ~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 607 LADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred CCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 999999999999999999999999999999998764
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=306.83 Aligned_cols=286 Identities=23% Similarity=0.248 Sum_probs=227.6
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCC--CceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE--SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
+..++++|||||||.||+|.++|+++.+........+++.. .+++++.+|++|.+|+.+.++.++..|+++++.. .
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~--~ 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA--A 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC--C
Confidence 55788999999999999999999999988887777777644 4679999999999998887888999999998876 5
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC-ceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA-PVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~yG~tE~~ 317 (523)
+++..+++.++.+ ++++++|++++.+.+.. ..+++++. +++|+++++++.+.+.+. +. .+++.||+||++
T Consensus 173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~ 243 (386)
T TIGR02372 173 APASGIMRHARPG--DLIVGTPFIWEQLADLD-----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETG 243 (386)
T ss_pred CChHHHHHhhccC--CEEEECcHHHHHHHhhC-----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccc
Confidence 6777788877643 89999999999997653 23456775 678999999999999875 54 689999999998
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceee
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~ 396 (523)
++++... .+..+.+ ++.++.+ | ++. + .|+ ..|++|||+++
T Consensus 244 ~i~~~~~--------~~~~~~~~p~~~~~~-~-~~~--------~---~g~------------------~~~~~tgD~g~ 284 (386)
T TIGR02372 244 GIGLREA--------PDDPFRLLPDLACFA-D-TLS--------S---AGL------------------ARRLDLQDRLA 284 (386)
T ss_pred ccccccC--------CCCCcccCCCccccC-C-Ccc--------C---CCc------------------cceeecCceEE
Confidence 7654321 1122333 3333222 1 110 0 011 12689999999
Q ss_pred EcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC--HHHHHHHHH
Q 009867 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID--EEEVLRFCK 474 (523)
Q Consensus 397 ~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~ 474 (523)
++++|.+++.||+||+||++|++|+|.+||+++.++|+|.+++|.. .++.+.+++++.++...+ .++++++++
T Consensus 285 ~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~~~~~ 359 (386)
T TIGR02372 285 WDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELEIELRATAA 359 (386)
T ss_pred EcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998853 356788888877543322 457899999
Q ss_pred hcCcCCCCCcEEEEeCCcCCCCCcccc
Q 009867 475 KNVAAFKVPKRVFITNELPKTASGKIQ 501 (523)
Q Consensus 475 ~~l~~~~~p~~i~~~~~lp~t~~GK~~ 501 (523)
++++.|++|..+.+++++|+|++||++
T Consensus 360 ~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 360 RHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=311.71 Aligned_cols=323 Identities=16% Similarity=0.150 Sum_probs=239.2
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHH---HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN---IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
+.++++.+++||||||.||++.++|.++...... ....+++.++|+++...+..+..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 3457788999999999999999999998765433 3345688899999887665443443333566777888887655
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCC-CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
..++..+++.|++++|++++++|+++..|++....... ....++|.++++||++++++.+.+++.||+++++.||+|
T Consensus 153 --~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~t 230 (422)
T TIGR02155 153 --GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLS 230 (422)
T ss_pred --CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccch
Confidence 33578999999999999999999999999876443221 123589999999999999999999999999999999999
Q ss_pred cccc--ccccCCCCCCCCCCCCCccccCCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeee
Q 009867 315 EATH--LMSSNPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT 391 (523)
Q Consensus 315 E~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 391 (523)
|+++ ++..+. . ...+......+..++++| ++|.+++.|+.|||++++. +...++.+||+|
T Consensus 231 E~~~~~~~~~~~--~---~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~T 293 (422)
T TIGR02155 231 EVIGPGVAMECV--E---TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKEALPVIRYRT 293 (422)
T ss_pred hhcCCceeeccc--c---cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------CccccceeeEEc
Confidence 9853 222221 0 011111112356788999 6899999999999999972 334456689999
Q ss_pred CceeeEcCC-C-----cEEEecccccceecCCcccChHHHHHHHhcCCCce-eeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 392 GDIGYFDSD-G-----YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA-QAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 392 GD~~~~~~~-g-----~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
||+++++++ | .+++.||.+|+++.+|.+|+|.+||+++.++|+|. .+++. .......+.+.+.++...+...
T Consensus 294 GDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~-~~~~~~~~~~~~~v~~~~~~~~ 372 (422)
T TIGR02155 294 RDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLE-LTRNGHMDELTLKVELKPESYT 372 (422)
T ss_pred CcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEE-EEcCCCccEEEEEEEEecCccc
Confidence 999999775 4 46899999999999999999999999999999998 55554 3344434566677666543211
Q ss_pred -C--------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHH
Q 009867 465 -D--------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503 (523)
Q Consensus 465 -~--------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~ 503 (523)
. .++|++++++.+..+. -..++.+++||+|+ ||++|-
T Consensus 373 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 373 LRLHEQASLLAGEIQHTIKQEVGVSM-DVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred ccchHHHHHHHHHHHHHHHhccCcEE-EEEEECCCCccCCC-CCceEE
Confidence 1 3567777777776653 12333346999988 999873
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=277.07 Aligned_cols=502 Identities=17% Similarity=0.203 Sum_probs=355.5
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCc-----ccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGK-----FDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~-----~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
.|+.|+|...++.+|+.+|+...+. .++||.+|.+++.+++..|+.+ -+++||.|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 4789999999999999999986432 7899999999999999999987 589999999999999999999999999
Q ss_pred hcCEEeeCCCC------CCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceee----eecCCccccccccccc
Q 009867 78 ARATAAPLNAA------YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATAT----LLDADSELTLSLAHSE 147 (523)
Q Consensus 78 ~G~~~v~l~~~------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 147 (523)
+|++++|+.|- -.-..+..+++.+++.+|+++......+.......+.....+. ..+......-......
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~ 929 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK 929 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence 99999999883 2456688999999999999998766555432222222111110 0111100000111112
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhc
Q 009867 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227 (523)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 227 (523)
......++...+.+.+|++-+.--++|.-.++.++|.++++.++.......+.++..++...+.+...|+....+..++.
T Consensus 930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVys 1009 (1363)
T KOG3628|consen 930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYS 1009 (1363)
T ss_pred ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHc
Confidence 22233344455678999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred CcEEEeCCCCCC--ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCC------CcceEEeccCCCCHHHHHHH
Q 009867 228 GAAVTLPAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYP------KLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 228 g~~~~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~------~l~~i~~~g~~~~~~~~~~~ 299 (523)
|...++.++..+ ++..++..++++++.-++.+=..++.+........ .+++ +...++..-++........+
T Consensus 1010 Gh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~-enl~~~gnn~s~s~vv~~~~RPr~ali~sf 1088 (1363)
T KOG3628|consen 1010 GHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV-ENLSKRGNNTSSSIVVPAEERPRIALIASF 1088 (1363)
T ss_pred CCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc-chhhhhhcccccceeeecCCccHHHHHHHH
Confidence 998666554343 78899999999999999988888877766544332 1111 11223333455555566666
Q ss_pred HHHh---CCc---eeccccccccccccccCCCCCC-------------CCCCC-----------CCccc-cCCcEEEEEC
Q 009867 300 EEAF---GAP---VLEAYAMTEATHLMSSNPLPED-------------GPHKP-----------GSVGR-PVGQEIAILD 348 (523)
Q Consensus 300 ~~~~---~~~---v~~~yG~tE~~~~~~~~~~~~~-------------~~~~~-----------~~~g~-~~~~~~~i~d 348 (523)
.+.| |.. +--.|+.-=--.++......++ ..... ...|. |+++++.+++
T Consensus 1089 ~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn 1168 (1363)
T KOG3628|consen 1089 KKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN 1168 (1363)
T ss_pred HHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC
Confidence 6555 211 2122332221111111110000 00000 01133 3578999999
Q ss_pred -CCCCccCCCceeEEEEeCCCcccccCCChh-hhhhhc----------cCCeeeeCceeeEcCC----------CcEEEe
Q 009867 349 -EIGVPQEGGAKGEVCIRGPNVTKGYKNNPE-ANKSAF----------LFGWFHTGDIGYFDSD----------GYLHLV 406 (523)
Q Consensus 349 -~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~-~~~~~~----------~~~~~~TGD~~~~~~~----------g~~~~~ 406 (523)
++..++.+|+.||+|+.+.+-+.+|+...+ .....| ..+|-||||+|++... ..+|++
T Consensus 1169 PEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVl 1248 (1363)
T KOG3628|consen 1169 PETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVL 1248 (1363)
T ss_pred CccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEe
Confidence 888899999999999999988877765322 222222 1249999999998532 358999
Q ss_pred cccccceecCCcccChHHHHHHH-hcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCCcE
Q 009867 407 GRIKELINRGGEKISPIEVDAVL-LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKR 485 (523)
Q Consensus 407 GR~~~~i~~~G~~v~~~~ie~~l-~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 485 (523)
|-.++.+..+|.+.+|-+||+.+ +.|+.|.+|+||.. +..+++.+.+.. .+...+-+--.+...|.+|.+...
T Consensus 1249 G~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~~g-q~~~~~LvPlIv~~vL~eH~iI~d 1322 (1363)
T KOG3628|consen 1249 GAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIECHG-QQELADLVPLIVNVVLEEHYIILD 1322 (1363)
T ss_pred ecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEecC-chhHhhhhHHHHHHHHhhcceEEE
Confidence 99999999999999999999987 56799999999965 444555565543 333333344445667888887765
Q ss_pred EEEe---CCcCCCCCccccHHHHHHHHHHh
Q 009867 486 VFIT---NELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 486 i~~~---~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
++.+ ..+|+++.|..+|..+++.|.++
T Consensus 1323 vV~fV~~G~~p~~~~gEK~R~~I~~~w~~~ 1352 (1363)
T KOG3628|consen 1323 VVAFVDKGVFPRNSRGEKQRAHILDSWLAG 1352 (1363)
T ss_pred EEEEecCCccccCCchhhHHHHHHHHHHhc
Confidence 5444 47999999999999999888764
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=262.75 Aligned_cols=324 Identities=18% Similarity=0.140 Sum_probs=224.5
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 235 (523)
+.++++.+.+||||||.||++.++|.++.......... .++.++|+++...+..+..+.....+++...|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 45688899999999999999999999988766554433 488899999999887776665444566777888766433
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCC-CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
.....++.+++++++.+.++|+.+..+++....... ....++|.++++||++++++++.+.+.||+++++.||+|
T Consensus 164 ----~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~T 239 (445)
T TIGR03335 164 ----KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGST 239 (445)
T ss_pred ----chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChh
Confidence 234568899999999999999998888765443221 124689999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCC-CCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeC
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEI-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTG 392 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TG 392 (523)
|++ .+..+.. ..+ ...+ ....++++|++ +.++++|+.|||++++-.... ....++--.|+||
T Consensus 240 E~~-~~~~c~~------~~g-~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~--------~r~~~PliRYrtg 303 (445)
T TIGR03335 240 EGT-MCGECQA------VAG-LHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG--------ERCGSLLINYDTE 303 (445)
T ss_pred hhh-heEEecC------CCC-ccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC--------ccCCceEEEeecC
Confidence 986 3333311 111 1112 35679999954 567899999999999832210 0011222359999
Q ss_pred ceeeEcC-C----Cc----EEEecccccceecCCcccChHHHHHHHhcC---CCce-eeEEEeecCCCCCceeEEEEEeC
Q 009867 393 DIGYFDS-D----GY----LHLVGRIKELINRGGEKISPIEVDAVLLSH---PDIA-QAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 393 D~~~~~~-~----g~----~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~---~~v~-~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
|++++.. + |. +...||.||+++++|.+++|.+||++|.+. +++. ++.++..........+.+.+...
T Consensus 304 D~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~ 383 (445)
T TIGR03335 304 DTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECE 383 (445)
T ss_pred ceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEec
Confidence 9999732 2 22 445699999999999999999999999995 5554 45555433323233566666665
Q ss_pred CCCCCCHHHHHHHHHhc----Cc-------CCCCCcEEEEe--CCcCCCC-CccccH
Q 009867 460 EGSNIDEEEVLRFCKKN----VA-------AFKVPKRVFIT--NELPKTA-SGKIQR 502 (523)
Q Consensus 460 ~~~~~~~~~l~~~~~~~----l~-------~~~~p~~i~~~--~~lp~t~-~GK~~r 502 (523)
++...+.+++.+.+... ++ ...+...+.++ ..||+++ .||..|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 384 DKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 54333334444444433 21 22233344444 4799984 688776
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=276.82 Aligned_cols=497 Identities=19% Similarity=0.210 Sum_probs=332.2
Q ss_pred CHHHHHHHHHhhcCCceeEEECC-----c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSG-----K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~-----~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
++.+.+.+.+...|...+..... + ...||++.+...+.++..|...|.-+|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 55667888888888888876421 1 5789999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCC----HHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccccccccccccccc
Q 009867 78 ARATAAPLNAAYT----PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAI 153 (523)
Q Consensus 78 ~G~~~v~l~~~~~----~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
+|..+++++|.++ .+.+..+.... .-...+....+ .+.+............+.. ...+... .......
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~----~s~~~~i~~~l-~i~~~~~~~~~~~~sv~~~-~~~f~~~--~~~~~~r 188 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFL----TSVELEIVRRL-NIIDILLNSLFPKLSVETI-ADSFQMV--LHNEDTR 188 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhh----eeccceehhhh-hhHHHHhhccccccchhhc-cchhhhh--hccCCCc
Confidence 9999999999999 22222211110 00000000000 0000000000000000000 0001000 1111111
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHH-HhhhcCcEEE
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLL-SSFAAGAAVT 232 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~-~~l~~g~~~~ 232 (523)
.......+..+.+.||||+||.||+|..+|..+.....+....+..+.+++. ...+.-.....+..+. +.+..|..+.
T Consensus 189 ~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~ 267 (1032)
T KOG1178|consen 189 EIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLL 267 (1032)
T ss_pred ceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceee
Confidence 1122345667889999999999999999999999999998888888877775 3222211111122233 4444555455
Q ss_pred eCCCCCC-ChhHHHHHHHhcCccEEeechHHHHHHHhcccCC------------CCCCCCCcceEEeccCCCCHHHHHHH
Q 009867 233 LPAAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK------------PEPVYPKLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 233 ~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------~~~~~~~l~~i~~~g~~~~~~~~~~~ 299 (523)
.+..... .+..+.+.+++++++..+.+|++++.++...... .....+.++....+|++....++...
T Consensus 268 ~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~ 347 (1032)
T KOG1178|consen 268 VPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTST 347 (1032)
T ss_pred cccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhh
Confidence 5443222 3789999999999999999999988877655442 01123578899999999999888866
Q ss_pred HHHhCCce-eccccccccccccccCCCCCCC-CCCCCCccccC--------CcEEEEECCCCCccCCCceeEEEEe----
Q 009867 300 EEAFGAPV-LEAYAMTEATHLMSSNPLPEDG-PHKPGSVGRPV--------GQEIAILDEIGVPQEGGAKGEVCIR---- 365 (523)
Q Consensus 300 ~~~~~~~v-~~~yG~tE~~~~~~~~~~~~~~-~~~~~~~g~~~--------~~~~~i~d~~~~~~~~g~~Gel~v~---- 365 (523)
...+-.-+ ..-|+.++..+...+....+.. ......+..++ ...++.....+.+.+.++.+.....
T Consensus 348 ~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~ 427 (1032)
T KOG1178|consen 348 FDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNL 427 (1032)
T ss_pred hhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccc
Confidence 65552222 2348888877666655432211 11111122110 1234444444444444333333322
Q ss_pred CCCcccccCCChhhhhhhc------cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeE
Q 009867 366 GPNVTKGYKNNPEANKSAF------LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAV 439 (523)
Q Consensus 366 ~~~~~~gy~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~ 439 (523)
+.++..| +..++.....+ .+..|+|||.++..++|-+.+.||.|++||.+|.++...+|+..+..+|.|.+++
T Consensus 428 ~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~i 506 (1032)
T KOG1178|consen 428 SSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAI 506 (1032)
T ss_pred cceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhh
Confidence 2344445 23333222222 2348999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCC-CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 440 AFGVPDDKYGEEINCAIIPREGSNI-DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 440 v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+....++..++.+.++++...+... ....++.+++..|+.|++|..++.++.+|+|++||+|+++|.. +...
T Consensus 507 tl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~-~~s~ 579 (1032)
T KOG1178|consen 507 TLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE-YNSK 579 (1032)
T ss_pred eeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhh-hhhh
Confidence 9999888888999999998766433 3467999999999999999999999999999999999999998 4433
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=232.53 Aligned_cols=323 Identities=19% Similarity=0.202 Sum_probs=237.6
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh---ccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
.+.++...+-.||||||+|+.+.+++.++..+...+...+ +...+|++..........|.....+++-..|++++..
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 3456677788899999999999999999877766654444 6788898887765333233222244555566666655
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~ 313 (523)
. .-+....++.++++++|++.++|+.+..|++.+.... ...-.++|.+++|+|+++++.++.+.+.||+..++.||+
T Consensus 167 ~--~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGl 244 (438)
T COG1541 167 S--GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGL 244 (438)
T ss_pred C--CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeecccc
Confidence 4 3478889999999999999999999999999887763 234578999999999999999999999999999999999
Q ss_pred ccccccc-ccCCCCCCCCCCCCCccccCCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeee
Q 009867 314 TEATHLM-SSNPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHT 391 (523)
Q Consensus 314 tE~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 391 (523)
||..+.. ..|.... +-.-......++++| ++|.++++|+.|||++|. ++...++--.|+|
T Consensus 245 tE~~g~g~~eC~~~~------glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~------------L~~~~~PlIRYrt 306 (438)
T COG1541 245 TEGFGPGAGECTERN------GLHIWEDHFIFEIVDPETGEQLPDGERGELVITT------------LTKEGMPLIRYRT 306 (438)
T ss_pred ccccCCccccccccc------CCCcchhhceeeeecCCcCccCCCCCeeEEEEEe------------ccccCcceEEEEc
Confidence 9997664 3332111 101011356789999 999999999999999997 3333334446999
Q ss_pred CceeeEcCC----Cc-----EEEecccccceecCCcccChHHHHHHHhcCCCce-eeEEEeecCCCCCceeEEEEEeCCC
Q 009867 392 GDIGYFDSD----GY-----LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA-QAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 392 GD~~~~~~~----g~-----~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
||+..+..+ |. .++.||+||++++.|.+|+|.+||++|.+.+++. +++++... ....+.+.+.|++.++
T Consensus 307 gDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~ 385 (438)
T COG1541 307 GDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENE 385 (438)
T ss_pred CCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCc
Confidence 999999763 32 4789999999999999999999999999999998 88888776 5556778888888764
Q ss_pred CC--CCHHHHHHHHHhcCc-CCCCCcEEE--EeCCcCCCCCccccH
Q 009867 462 SN--IDEEEVLRFCKKNVA-AFKVPKRVF--ITNELPKTASGKIQR 502 (523)
Q Consensus 462 ~~--~~~~~l~~~~~~~l~-~~~~p~~i~--~~~~lp~t~~GK~~r 502 (523)
.. .+..++.+.+...+- ..-....+. .+.++|+|.. |..|
T Consensus 386 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 386 AEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ceeE
Confidence 11 112222234433322 222333444 4468999965 5544
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=197.76 Aligned_cols=210 Identities=20% Similarity=0.203 Sum_probs=158.0
Q ss_pred HHHHHhhcCCceeEEEC-C----cccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 10 LNQVIDQFSSKRALSVS-G----KFDLTYSRIHELVERAASRLVA-AGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 10 l~~~a~~~p~~~a~~~~-~----~~~~Ty~el~~~~~~~A~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
|...++++|+++|+++. + +.++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 57788899999999753 2 2469999999999999999998 6999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee----ec--C-C-cccccccccccc-c-cccc
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL----LD--A-D-SELTLSLAHSES-D-TNAI 153 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~-~-~~~~~~~~~~~~-~-~~~~ 153 (523)
|++ .+++++++++++....... . ....... .. . . ......+..... . ....
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG-----S-GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFA 142 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc-----C-CceEEEeccccccCCCCCCCCcccchhhhhhccCCCCC
Confidence 995 6899999998776655321 1 1111100 00 0 0 000011111111 0 1111
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
+.....++|++.++||||+ +|.++.... ...+++++|+.+ ..|++|.+|+...++.++..|+++++
T Consensus 143 ~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~ 208 (227)
T TIGR03089 143 PYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL 208 (227)
T ss_pred CCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence 1113456899999999986 555554443 566789999999 99999999998889999999999999
Q ss_pred CCCCCCChhHHHHHHHhcCcc
Q 009867 234 PAAGRFSASTFWQDMIKYNAT 254 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t 254 (523)
.+ .+++..+++.++++|+|
T Consensus 209 ~~--rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 209 VT--HPDPARLDQIAETERVT 227 (227)
T ss_pred ec--CCCHHHHHHHHHhhcCC
Confidence 86 89999999999999986
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=182.35 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=111.6
Q ss_pred ccCCeeeeCceeeE-cCCCcEEEecccccceecCC---cccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 384 FLFGWFHTGDIGYF-DSDGYLHLVGRIKELINRGG---EKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 384 ~~~~~~~TGD~~~~-~~~g~~~~~GR~~~~i~~~G---~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
+.+|||+|||+|++ |++|+++|.||.+ +| ++|+|. ||++|.++|+|.+|+|++++++..++.+.++|++.
T Consensus 206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 46899999999998 7999999999997 77 799999 99999999999999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 460 EGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 460 ~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
. ..+.++++++++++|+. ++|..+.++++||+|++||++|+.|+....+..+
T Consensus 280 ~--~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~ 331 (365)
T PRK09188 280 L--PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQID 331 (365)
T ss_pred C--CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccc
Confidence 3 45778999999999999 9999999999999999999999999998755444
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=178.00 Aligned_cols=488 Identities=16% Similarity=0.230 Sum_probs=318.1
Q ss_pred CHHHHHHHHHhhcCCceeEEECCc----ccccHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHH
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGK----FDLTYSRIHELVERAAS-RLVAAGINAGDVVALTFPN--TVEFVIMFLAVIR 77 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~----~~~Ty~el~~~~~~~A~-~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~ 77 (523)
.+...+.+.-.+++.+.|.++-+. ..+||..+..++.++|+ .|-+.|+.++|+|.++... .+++++..++|..
T Consensus 95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 355666776678888999886543 78999999999999999 6666699999999999875 4999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccc--ccccc
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT--NAISK 155 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (523)
.|.+.+|+.+..+.+++..+++....+++++...............+...... +...++..... .....
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~---------~w~t~~~k~~~~~~k~~~ 245 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVA---------WWKTNDFKGNYTKDKIKK 245 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHH---------hhhcccccceeehhhccC
Confidence 99999999999999999999999999999988765544332221111111100 00000000000 00111
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH---------------HH-----HHHhccCCCceEEEEcChhhHH
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS---------------NI-----KSVYKLTESDSTVIVLPLFHVH 215 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~---------------~~-----~~~~~~~~~~~~~~~~p~~~~~ 215 (523)
+..... ..++-||.+++|.--+++++|+ ++.+.+ ++ ...++....++++.........
T Consensus 246 P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~l 323 (1363)
T KOG3628|consen 246 PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQL 323 (1363)
T ss_pred Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCccccc
Confidence 111222 7899999999999999999887 432222 12 2223445677777777777888
Q ss_pred HHHHHHHHhhhcCcEEEeCCCCCC-ChhHHHHHHHhcCccEEeechHHHHHHHhcccCC----------CCCCCCCcceE
Q 009867 216 GMLAGLLSSFAAGAAVTLPAAGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK----------PEPVYPKLRFI 284 (523)
Q Consensus 216 g~~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----------~~~~~~~l~~i 284 (523)
|++.+.+.+++.|.|...++.... .+..+...+-+++.+++..--..++.....-... ...+++++|.+
T Consensus 324 GlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C 403 (1363)
T KOG3628|consen 324 GLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGC 403 (1363)
T ss_pred chhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeee
Confidence 999999999999999888775433 5566777778899998876655544433221111 12457899999
Q ss_pred EeccCCCCHHHHHHHHHHh----CCc---e---------------eccccccccccccccCCCCC-CCCCCC--------
Q 009867 285 RSCSASLAPVILSRLEEAF----GAP---V---------------LEAYAMTEATHLMSSNPLPE-DGPHKP-------- 333 (523)
Q Consensus 285 ~~~g~~~~~~~~~~~~~~~----~~~---v---------------~~~yG~tE~~~~~~~~~~~~-~~~~~~-------- 333 (523)
.+..+.+.++..+.....| |.. + ...=+++|.+......+... +.....
T Consensus 404 ~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L 483 (1363)
T KOG3628|consen 404 MVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEAL 483 (1363)
T ss_pred EEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeecccc
Confidence 9999999988777666554 211 1 11112344443322222100 000000
Q ss_pred ------------------CCcccc-C-CcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc------C
Q 009867 334 ------------------GSVGRP-V-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL------F 386 (523)
Q Consensus 334 ------------------~~~g~~-~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------~ 386 (523)
-.++.- + +..+.+++ ++.+.|..+++|||||.+++..++||.-+..+...|. .
T Consensus 484 ~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~ 563 (1363)
T KOG3628|consen 484 KLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESS 563 (1363)
T ss_pred ccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeecccc
Confidence 011211 2 23445555 6667899999999999999999999988777777662 1
Q ss_pred C-------eeeeCceeeEcCCCcEEEeccccccee-cCCcccChHHH----------HHHHhcCCCceeeEEEeecCCCC
Q 009867 387 G-------WFHTGDIGYFDSDGYLHLVGRIKELIN-RGGEKISPIEV----------DAVLLSHPDIAQAVAFGVPDDKY 448 (523)
Q Consensus 387 ~-------~~~TGD~~~~~~~g~~~~~GR~~~~i~-~~G~~v~~~~i----------e~~l~~~~~v~~~~v~~~~~~~~ 448 (523)
+ +.|||=+|++. +|.++++|-.+|.+. ..|......+| +-+.+..+.|.++.+|-
T Consensus 564 ~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------ 636 (1363)
T KOG3628|consen 564 GKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------ 636 (1363)
T ss_pred CCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------
Confidence 1 78999999995 556777777777665 78877776654 33445557788888874
Q ss_pred CceeEEEEEeCCCCCCCHHHHHHHHHh---cC-cCCCCCc---EEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 449 GEEINCAIIPREGSNIDEEEVLRFCKK---NV-AAFKVPK---RVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 449 ~~~~~~~v~~~~~~~~~~~~l~~~~~~---~l-~~~~~p~---~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
.+.+.+.++.++.. .+++-.++..+ .+ .-|++-. .++..+.||+|+-|-+.-..+++.|++.
T Consensus 637 ~E~~~Vv~~esP~a--~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G 705 (1363)
T KOG3628|consen 637 DEHIVVVVLESPDA--TEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEG 705 (1363)
T ss_pred cceEEEEEEeCcch--hhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcC
Confidence 44555555555543 22222222222 11 1233222 2333468999998889999999999864
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=170.94 Aligned_cols=255 Identities=15% Similarity=0.077 Sum_probs=169.4
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHH-HHH--hccCCCceEEEEcCh-hhHHHHHHHHHHhhhcCcE-EEeCCCCC
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNI-KSV--YKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAA-VTLPAAGR 238 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~-~~~--~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~-~~~~~~~~ 238 (523)
..+..||||||.|-.+..+........... ... .++..++++...... .+.+ .++..... +...+-.
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly-------~~~~~~~~~~~~~~l~- 173 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLY-------QSVNNRWISLDFFDLL- 173 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHH-------HHHHhccceeeecCCC-
Confidence 556779999999999999987654333222 221 245566666655321 1222 11211111 2222221
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~ 318 (523)
-+.+..++.|++++|+.+.++|+.+..|++....... . ..++.++++||.++++.++.+++.||+++++.||+|| |.
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~ 250 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-T-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GF 250 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-C-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hh
Confidence 3688999999999999999999999999987655432 2 4789999999999999999999999999999999999 65
Q ss_pred ccccCCCCCCCCCCCCCccccCCcEEE--EECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceee
Q 009867 319 LMSSNPLPEDGPHKPGSVGRPVGQEIA--ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396 (523)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~g~~~~~~~~--i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~ 396 (523)
++..|..... .-.+....++ ++|+.++ ++.++|+ ..+..++--.|+|||++.
T Consensus 251 la~eC~~g~l-------Hl~ed~~~vE~~ivD~~~~-------~~~ViT~------------L~n~~~PlIRYrtGD~~~ 304 (430)
T TIGR02304 251 LASTCRCGTL-------HLNEDLVHIEKQYLDEHKR-------FVPIITD------------FTRTTQPIVRYRLNDILV 304 (430)
T ss_pred eEEecCCCCE-------EEccccEEEEeeEECCCCc-------eEEEEec------------CCCccceEEeeeCCCEEE
Confidence 6555532111 1111233455 7886553 3347776 222223334599999988
Q ss_pred EcCC----Cc----E-EEecccccceec---CCcc--cChHHHHHHH-hcCCCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 397 FDSD----GY----L-HLVGRIKELINR---GGEK--ISPIEVDAVL-LSHPDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 397 ~~~~----g~----~-~~~GR~~~~i~~---~G~~--v~~~~ie~~l-~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
+..+ |. + .+.||.+|+++. +|.. ++|..+++++ ...++|.++.+++.. .+.+.+.++..
T Consensus 305 ~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~----~~~l~v~~~~~ 378 (430)
T TIGR02304 305 ESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG----SAQLELIADCE 378 (430)
T ss_pred eCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc----CCeEEEEEEeC
Confidence 8543 32 3 488999999973 4554 5899999874 567899999888642 23355666653
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-12 Score=91.13 Aligned_cols=70 Identities=39% Similarity=0.724 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCCC--cEEEEeCC-cCCCCCcc
Q 009867 424 EVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVP--KRVFITNE-LPKTASGK 499 (523)
Q Consensus 424 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p--~~i~~~~~-lp~t~~GK 499 (523)
|||+++.++|+|.+|+|++.+++..++.+.+++++ +.++++++++++|+.|++| ..++.+++ ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 79999999999999999999999888999999988 4589999999999999999 55555577 99999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=102.95 Aligned_cols=229 Identities=18% Similarity=0.257 Sum_probs=139.9
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh---c-cCC-CceEEEEcChhh----HHHHHHHHHHhhhcCc
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---K-LTE-SDSTVIVLPLFH----VHGMLAGLLSSFAAGA 229 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~-~~~-~~~~~~~~p~~~----~~g~~~~~~~~l~~g~ 229 (523)
..+++..++.||||||.|--+.+.+..+..+...+...+ . ... ...++...|... ........+.....++
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677888999999998767777766655544433222 2 221 122333334321 1111222333344555
Q ss_pred EEEeCCCCCCChhHHHHHHH----hcCccEEeechHHHHHHHhcccCCCC-CCCC-CcceEEecc------CCCC-HHHH
Q 009867 230 AVTLPAAGRFSASTFWQDMI----KYNATWYTAVPTIHQIVLDRHVAKPE-PVYP-KLRFIRSCS------ASLA-PVIL 296 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~----~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~-~l~~i~~~g------~~~~-~~~~ 296 (523)
...+ ....++.+.++..+. +.++..+++.|.++..++...+.... ..++ ..+.+-.|| +.++ .+..
T Consensus 167 ~~~l-~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~ 245 (365)
T PF04443_consen 167 RFAL-DNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY 245 (365)
T ss_pred eeee-cCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence 5333 444567777776664 45788899999988777665444331 1222 445555555 4564 5777
Q ss_pred HHHHHHhCC----ceeccccccccccccccCCCCCCCCCCCCCccccCCcEEEEEC-CCCCccCCCceeEEEEeCCCccc
Q 009867 297 SRLEEAFGA----PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTK 371 (523)
Q Consensus 297 ~~~~~~~~~----~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~ 371 (523)
+.+.+.||+ .+++.|||||.....+.+.... .-.|+. +.+.| ++..+++.|+.|-|.+-.+...
T Consensus 246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w--V~iRDp~tl~~~~~Ge~Gli~vidl~~~- 314 (365)
T PF04443_consen 246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW--VIIRDPETLEPLPPGETGLIQVIDLANT- 314 (365)
T ss_pred HHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe--EEEECCCCCcCCCCCCeeEEEEEccccc-
Confidence 888888987 5999999999876655553211 112334 55668 6778999999999988764322
Q ss_pred ccCCChhhhhhhccCCeeeeCceeeEcCC--------CcEEEeccccc
Q 009867 372 GYKNNPEANKSAFLFGWFHTGDIGYFDSD--------GYLHLVGRIKE 411 (523)
Q Consensus 372 gy~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~~~~~GR~~~ 411 (523)
.| .+..-|.|+|.+..+ ..+.++||.+.
T Consensus 315 s~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 315 SY------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred CC------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence 11 123679999988654 26899999875
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=109.11 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=102.9
Q ss_pred CCCcceEEeccCCCCHHHHHHHHHHhC-Ccee-ccccccccccccccCCCCCCCCCCCCCccccCCcEEEEEC--CC---
Q 009867 278 YPKLRFIRSCSASLAPVILSRLEEAFG-APVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILD--EI--- 350 (523)
Q Consensus 278 ~~~l~~i~~~g~~~~~~~~~~~~~~~~-~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~d--~~--- 350 (523)
|++++.+.+.+..-...-.+.+++.+| ..++ ..|++||+...+.... ...+..-.|...-.+.++ +.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~~------~~~~~~l~~~~~ffEFip~~~~~~~ 339 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLDP------EDPGYVLAPDSGFFEFIPVDEDEQN 339 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES-C------CC--EEE-TTSSEEEEEE-STT---
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecCC------CCCceEeecCCeEEEEEeccCCccc
Confidence 899998777776666677777777774 3433 7799999643322221 111111112122444444 22
Q ss_pred ----CC-----ccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC--CC--cEEEecccccceecCC
Q 009867 351 ----GV-----PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS--DG--YLHLVGRIKELINRGG 417 (523)
Q Consensus 351 ----~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~--~g--~~~~~GR~~~~i~~~G 417 (523)
.. .+..|+..||+++.. .|.|+ |+.||++++.. ++ .+.|.||.+.++.+.|
T Consensus 340 ~~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~g 403 (528)
T PF03321_consen 340 PSEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFG 403 (528)
T ss_dssp ----SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS
T ss_pred ccCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecce
Confidence 11 346789999999873 44454 99999999842 23 6899999999999999
Q ss_pred cccChHHHHHHHhcC-----CCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 009867 418 EKISPIEVDAVLLSH-----PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNV 477 (523)
Q Consensus 418 ~~v~~~~ie~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l 477 (523)
++++-.++++++.+. -.+.++.+...........-..++..... ..+.+.+.+.+.+.|
T Consensus 404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL 467 (528)
T ss_dssp --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence 999999999988765 33667777766333333345566666544 223456677776666
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-05 Score=80.49 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=87.6
Q ss_pred CCCCCcce---EEeccCCCCHHHHHHHHHHh-CCc-eeccccccccccccccCCCCCCCCCCCCCccccCCcEEEEEC--
Q 009867 276 PVYPKLRF---IRSCSASLAPVILSRLEEAF-GAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILD-- 348 (523)
Q Consensus 276 ~~~~~l~~---i~~~g~~~~~~~~~~~~~~~-~~~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~d-- 348 (523)
..|++++. +..||-. .-...++..+ +.. +...|++||+....-..+..+ ....+..-.|.+...+.++
T Consensus 299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~--p~~~~~~l~~~~~ffEFiP~~ 373 (597)
T PLN02249 299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCK--PSEVSYTIMPNMAYFEFLPHN 373 (597)
T ss_pred HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCC--CCCcceEecCCcEEEEeeecc
Confidence 34788444 4445433 4445555555 343 447899999653332221100 0111111112233445542
Q ss_pred CCCC------------ccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC----CCcEEEecccccc
Q 009867 349 EIGV------------PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS----DGYLHLVGRIKEL 412 (523)
Q Consensus 349 ~~~~------------~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~~~ 412 (523)
+.+. .+..|+..||+|+. ..|.|+ |+.||.+++.. .-.+.|.||.+.+
T Consensus 374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ 437 (597)
T PLN02249 374 HDGDGALDETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVL 437 (597)
T ss_pred cCCcccCCCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcc
Confidence 2221 24568889999986 233333 99999999853 2458999999999
Q ss_pred eecCCcccChHHHHHHHhc---C-----CCceeeEEEee
Q 009867 413 INRGGEKISPIEVDAVLLS---H-----PDIAQAVAFGV 443 (523)
Q Consensus 413 i~~~G~~v~~~~ie~~l~~---~-----~~v~~~~v~~~ 443 (523)
+.+.|+++.-.+++.++.+ . -.|.|+.++..
T Consensus 438 ls~~GEKl~e~~v~~Av~~a~~~~~~~~~~v~eft~~~~ 476 (597)
T PLN02249 438 LSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYAE 476 (597)
T ss_pred eecccccCCHHHHHHHHHHHHHHhhhcCceEEEeEEecC
Confidence 9999999999999998866 1 23567777443
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=71.89 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=89.5
Q ss_pred CCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCCCCCCCCCcccc--CC-cEEEEEC-C
Q 009867 276 PVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP--VG-QEIAILD-E 349 (523)
Q Consensus 276 ~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~--~~-~~~~i~d-~ 349 (523)
..|++++.|.+.-..-...-...++..+ |.+++ -.|++||+...+-..+.. .+..+..+ ++ ...+.++ +
T Consensus 290 rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~-----~p~~~sy~L~p~~~yFEFip~~ 364 (606)
T PLN02247 290 RLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLS-----DPSDVSYTLLPNMAYFEFLPVD 364 (606)
T ss_pred HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCC-----CccCCceeecCCcEEEEEeecC
Confidence 4578999988876666666667776555 66666 579999976544443211 11111111 22 1234442 1
Q ss_pred CC-----------------------------CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc--
Q 009867 350 IG-----------------------------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD-- 398 (523)
Q Consensus 350 ~~-----------------------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~-- 398 (523)
++ ..+..|+..||+||. +.|.| .|+.||+.++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLY-------------RYrlGDvv~V~GF 428 (606)
T PLN02247 365 KNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLY-------------RYRVGDILMVTGF 428 (606)
T ss_pred CCcccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceE-------------EEecCCEEEEeee
Confidence 11 034568889999986 23333 39999998873
Q ss_pred --CCCcEEEecccccceecCCcccChHHHHHHHhcC
Q 009867 399 --SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH 432 (523)
Q Consensus 399 --~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~ 432 (523)
..-.+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus 429 ~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 429 YNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred cCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 3456999999999999999999999998887654
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00037 Score=70.01 Aligned_cols=136 Identities=16% Similarity=0.255 Sum_probs=89.0
Q ss_pred CCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCCCCCCCCCcccc--CC-cEEEEEC--
Q 009867 276 PVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP--VG-QEIAILD-- 348 (523)
Q Consensus 276 ~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~--~~-~~~~i~d-- 348 (523)
..+++++.|.+....-...-...++..+ |.+++ -.|++||+...+...+.. .+..+..+ ++ ...+.++
T Consensus 301 rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~-----~p~~~sy~L~p~~~yFEFip~~ 375 (612)
T PLN02620 301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLC-----KPSEVSYTLIPTMAYFEFLPVH 375 (612)
T ss_pred HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCC-----CcccceeeecCCcEEEEEeecc
Confidence 4578999988876666666667776555 67666 569999976544443321 11111112 22 1233332
Q ss_pred C-C-----------------CC-----ccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc----CCC
Q 009867 349 E-I-----------------GV-----PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD----SDG 401 (523)
Q Consensus 349 ~-~-----------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~----~~g 401 (523)
+ + +. .+..|+..||+||. +.|.| .|+.||+.++. ..-
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLy-------------RYrlGDvv~V~Gf~n~~P 439 (612)
T PLN02620 376 RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLY-------------RYRVGDVLRVAGFKNKAP 439 (612)
T ss_pred CcccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceE-------------EEecCCEEEEeeecCCCc
Confidence 1 1 11 24678899999986 23333 39999998874 345
Q ss_pred cEEEecccccceecCCcccChHHHHHHHhcC
Q 009867 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSH 432 (523)
Q Consensus 402 ~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~ 432 (523)
.+.|++|.+.+..+.|++.+-.++..++.+.
T Consensus 440 ~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 440 QFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred eEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 6999999999999999999999998877543
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=53.87 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=48.8
Q ss_pred CcccChHHHHHHHhcCCCce-eeEEEeecCCCCCceeEEEEEeCCCCCCC---HHH----HHHHHHhcCcCCCCCcEEEE
Q 009867 417 GEKISPIEVDAVLLSHPDIA-QAVAFGVPDDKYGEEINCAIIPREGSNID---EEE----VLRFCKKNVAAFKVPKRVFI 488 (523)
Q Consensus 417 G~~v~~~~ie~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~----l~~~~~~~l~~~~~p~~i~~ 488 (523)
|.+++|.+||++|.++|++. ++.++.. .....+.+.+.|...++...+ ..+ +.+.+++.+. +...+.+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~-~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg---v~~~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVT-REGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG---VRPEVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEE-EETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS---S-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEE-cCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC---ceEEEEE
Confidence 78999999999999999999 6665544 344567788888888764321 233 4444444432 2234545
Q ss_pred e--CCcCCCCCccccH
Q 009867 489 T--NELPKTASGKIQR 502 (523)
Q Consensus 489 ~--~~lp~t~~GK~~r 502 (523)
+ .+||++ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 4 589997 678765
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.18 Score=48.91 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=77.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT--VEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
.-+|+.|....+..+|+.|...|..+||+|.....-+ ..-+.+.+|+.++|+.++|+.+. ..+.-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 4679999999999999999999999999998887511 11277889999999999999884 45666788999999999
Q ss_pred EecccchhHHHHHHhhc
Q 009867 107 LTPAEGNAAAQAAASKL 123 (523)
Q Consensus 107 i~~~~~~~~~~~~~~~~ 123 (523)
.+.++....+.+.....
T Consensus 187 ~~tps~~l~lae~~~~~ 203 (438)
T COG1541 187 AATPSYLLYLAEEAEEE 203 (438)
T ss_pred EEChHHHHHHHHHHHHc
Confidence 99998877766665554
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.44 E-value=5 Score=39.85 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV--EFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|..++......++..+...|+++||++....+.+. ......+++...|+.++++++.. .+.+...+++.+++++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 45688888777777777888889999999887665432 22334677888999999887754 5778899999999999
Q ss_pred EecccchhHHH
Q 009867 107 LTPAEGNAAAQ 117 (523)
Q Consensus 107 i~~~~~~~~~~ 117 (523)
+..+.....+.
T Consensus 172 ~~~Ps~l~~L~ 182 (422)
T TIGR02155 172 MVTPSYMLNLL 182 (422)
T ss_pred EEcHHHHHHHH
Confidence 98877665443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.18 E-value=5.6 Score=39.87 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVE--FVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
.-+|..++...+...+..+...|+.+||++.+..+.+.. .....+++...|+.+++... .+....+++..++..+
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 456889999888888888888899999999998875532 33456788899998877653 2345678889999988
Q ss_pred Eecccc
Q 009867 107 LTPAEG 112 (523)
Q Consensus 107 i~~~~~ 112 (523)
+.....
T Consensus 181 ~~~ps~ 186 (445)
T TIGR03335 181 VASVFK 186 (445)
T ss_pred EECHHH
Confidence 765543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.64 E-value=11 Score=33.70 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHhcCEEeeCCCCCCHHHHH
Q 009867 18 SSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT--VEFVIMFLAVIRARATAAPLNAAYTPDEFE 95 (523)
Q Consensus 18 p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 95 (523)
++.+|++...+ -.|...+...+ ...|+.++|++. ..|-. .-....+++++..|++.+.+ +.++.+.+.
T Consensus 149 ~~D~a~l~yTs-g~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l 218 (227)
T TIGR03089 149 ATAPALVAGGG-EWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLD 218 (227)
T ss_pred CCcceeeeccc-cccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHH
Confidence 34556654443 23444433322 556899999999 88843 24446789999999999888 688999998
Q ss_pred HHHhhCCc
Q 009867 96 FYLSDSES 103 (523)
Q Consensus 96 ~~l~~~~~ 103 (523)
..+++.++
T Consensus 219 ~~i~~~~v 226 (227)
T TIGR03089 219 QIAETERV 226 (227)
T ss_pred HHHHhhcC
Confidence 88888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 523 | ||||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 5e-57 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-51 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 7e-49 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-44 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 4e-44 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-41 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-41 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 8e-41 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 4e-39 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-39 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-39 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 6e-39 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-39 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 7e-38 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 9e-36 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 9e-36 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-35 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-35 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-35 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-34 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 8e-34 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-33 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-33 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-33 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 2e-29 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-29 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-29 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 2e-29 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 3e-29 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 5e-29 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 6e-29 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 9e-29 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 9e-29 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-28 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-28 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-28 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-28 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 3e-28 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 5e-27 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-26 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-24 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-21 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-21 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 3e-20 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-17 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 5e-17 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 7e-17 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 2e-14 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 2e-14 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 5e-14 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 4e-13 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 4e-13 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 2e-10 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 9e-07 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 1e-05 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 4e-05 |
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 523 | |||
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 1e-174 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 1e-168 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 1e-160 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-159 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 1e-158 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 1e-154 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 1e-154 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 1e-153 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 1e-153 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 1e-151 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 1e-149 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-146 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 1e-142 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 1e-140 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 1e-133 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 2e-99 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 5e-96 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 4e-93 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 3e-80 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 3e-72 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 1e-55 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 3e-42 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-42 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 3e-41 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 1e-40 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 4e-40 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-39 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 3e-37 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 6e-34 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 3e-31 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 2e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 5e-07 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 6e-07 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 2e-06 |
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 500 bits (1290), Expect = e-174
Identities = 152/508 (29%), Positives = 225/508 (44%), Gaps = 40/508 (7%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
L + + AL + LTY+ EL A A I VA+
Sbjct: 24 LFPALSPAPTGAPADRPALRFGER-SLTYA---ELAAAAG--ATAGRIGGAGRVAVWATP 77
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
+E + +A + A A PLN E LSDS L+L P + A
Sbjct: 78 AMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGA---- 133
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
+D D ++ +D D AL ++TSGTT PKG + +
Sbjct: 134 -----LERVDVDVRARGAVPEDGAD----------DGDPALVVYTSGTTGPPKGAVIPRR 178
Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
LA ++ + ++ T D V LPLFHVHG++ G+L G +V GRFS
Sbjct: 179 ALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH--LGRFSTEGA 236
Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY--PKLRFIRSCSASLAPVILSRLEEA 302
+ AT VPT++ + + A PE R + S SA+L R+ A
Sbjct: 237 A-RELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAA 295
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG---VPQEGGA 358
G V+E Y MTE T + +S DG + G+VG P+ G E+ +++E G +G +
Sbjct: 296 TGRRVIERYGMTE-TLMNTSVRA--DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES 352
Query: 359 KGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGR-IKELINRG 416
GE+ +RGPN+ Y N P+A +AF G+F TGD+ D DGY+ +VGR +LI G
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-GSNIDEEEVLRFCKK 475
G KI E++ LL HP++ +A G PD GE I I+P + + +
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAA 472
Query: 476 NVAAFKVPKRVFITNELPKTASGKIQRR 503
+A K P+ V + +P+ GKI +R
Sbjct: 473 RLAPHKRPRVVRYLDAVPRNDMGKIMKR 500
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 484 bits (1247), Expect = e-168
Identities = 149/493 (30%), Positives = 241/493 (48%), Gaps = 15/493 (3%)
Query: 20 KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79
K A+ + ++Y+ + R A+ LVA G+ GD VA +VE ++++LA +RA
Sbjct: 18 KLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77
Query: 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL 139
PLN AYT E +++++D+E K+++ A A+K+ + T S
Sbjct: 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
+ SE+ D+A L+TSGTT R KG L+ +NLA++ + ++
Sbjct: 138 DAAAGASEAFATI----DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRF 193
Query: 200 TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAV 259
T D + LP++H HG+ + A ++ +F M + AT V
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF--LPKFDPDKILDLMAR--ATVLMGV 249
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
PT + +L + +R S SA L G VLE Y MTE +
Sbjct: 250 PTFYTRLLQ-SPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETN-M 307
Query: 320 MSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
+SNP DG PG+VG + G + D E G G G + ++GPNV KGY P
Sbjct: 308 NTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMP 365
Query: 378 EANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIA 436
E KS F G+F TGD+G D GY+H++GR K+L+ GG + P E+++ + + P +
Sbjct: 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVV 425
Query: 437 QAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTA 496
++ GVP +GE + ++ +G+ IDE +VL +A FK+PK+V ++LP+
Sbjct: 426 ESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNT 485
Query: 497 SGKIQRRIVSEHF 509
GK+Q+ ++ E +
Sbjct: 486 MGKVQKNVLRETY 498
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-160
Identities = 152/515 (29%), Positives = 226/515 (43%), Gaps = 24/515 (4%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVAL 60
+ TL + + F + A V G LT+ ER AS L+ G++ GD VA+
Sbjct: 3 LHDFTLADVYRRNAALFPDRTAFMVDGV-RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61
Query: 61 TFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAA 120
N E + + AV A P+N DE F L D +++ +
Sbjct: 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121
Query: 121 SKLNISHATATLLDADSELT--LSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
L + D LA + +D + +HT+ RP+G
Sbjct: 122 PSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAP----EFGAADGFVIIHTAAVGGRPRG 177
Query: 179 VPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238
++Q NL + S++ ++LTE+D + +LPLFHV G+ L A GA+V +
Sbjct: 178 ALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---K 234
Query: 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSR 298
F + +D+ + T + +LD + +L +R+ + P + R
Sbjct: 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILD------QAAPAQLASLRAVTGLDTPETIER 288
Query: 299 LEEA-FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
E A + +E + L + P D +P S GRP+ + +A++D P
Sbjct: 289 FEATCPNATFWATFGQSETSGLSTFAP-YRD---RPKSAGRPLFWRTVAVVDAEDRPLPP 344
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI--KELIN 414
G GE+ +RGP V KGY NN A + AF GW HTGD+G FD+DGYL GR KELI
Sbjct: 345 GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIK 404
Query: 415 RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474
GGE + P EV+ L HP IA AV GVPD ++ E I + + G +I + + F
Sbjct: 405 TGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVA 464
Query: 475 KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
+A +K PK V LPK A G I R V
Sbjct: 465 SLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAH 499
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 461 bits (1189), Expect = e-159
Identities = 141/482 (29%), Positives = 239/482 (49%), Gaps = 13/482 (2%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
+TY++++ L R A L A GI GD VAL PN+VEF +F + A A P+N
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
E F LSDS SK+++ A A ++ + + ADS + + +
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEP 163
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
D ++TSGTT PKGV T ++ ++ S+ S + D ++ LP
Sbjct: 164 AV----ECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 219
Query: 211 LFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV + + S+ +++P +F A+ W +++ AVP I +
Sbjct: 220 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFMRQ-V 275
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E P R+ + A + ++ V++ YA+TE+ + ED
Sbjct: 276 PEFAELDAPDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLL-SEDAL 333
Query: 331 HKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389
K GS GR ++A+ + GV +E G GEV I+ + K Y N PEA + AF GWF
Sbjct: 334 RKAGSAGRATMFTDVAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWF 392
Query: 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYG 449
TGDIG D +GYL++ R+K++I GGE + P E+++V++ P +++ G+PD+K+G
Sbjct: 393 RTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452
Query: 450 EEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509
E AI+ + + + E++++ +C +A +K+PK+V +P+ +GKI + ++ E +
Sbjct: 453 EIA-AAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQY 511
Query: 510 LA 511
A
Sbjct: 512 SA 513
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 457 bits (1179), Expect = e-158
Identities = 117/509 (22%), Positives = 203/509 (39%), Gaps = 31/509 (6%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
+L L + Q A++ + TY ++ A RL V L N
Sbjct: 2 SLDFWLYKQAQQNGHHIAITDGQE-SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDN 57
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
+++ +I+ A A A +N TP+E + + +L+ S +
Sbjct: 58 SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD 117
Query: 125 ISHATATLL---------DADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
I A + + + + + I + + D+A + TSGTT
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177
Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
K VP T N AS K + + VLP++H+ G+ L + +
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236
Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
+F+A + T + VP ++ + L+ I A L+ +
Sbjct: 237 --KFNAEQILTMIKNERITHISLVPQTLNWLMQQ----GLHEPYNLQKILLGGAKLSATM 290
Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQ 354
+ + + P+ ++ MTE + PE +P +VG P ++ I +
Sbjct: 291 IETALQ-YNLPIYNSFGMTETCSQFLTAT-PEMLHARPDTVGMPSANVDVKIKNP----- 343
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELIN 414
GE+ I+G NV GY + F G+F+TGDI D +GY+ + R K+LI
Sbjct: 344 NKEGHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEIDHEGYVMIYDRRKDLII 402
Query: 415 RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474
GGE I P +++ V P I+ AV G PDD +G+ + I + +++ +
Sbjct: 403 SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISKAQLIAYLS 460
Query: 475 KNVAAFKVPKRVFITNELPKTASGKIQRR 503
K++A +KVPK + LP T++GK+QR
Sbjct: 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQRN 489
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 450 bits (1161), Expect = e-154
Identities = 116/523 (22%), Positives = 212/523 (40%), Gaps = 15/523 (2%)
Query: 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
L +L + A+ + G+ L+Y + L A+RL G+ GD +
Sbjct: 28 IDQPLTRILTVGVQSHPHSLAI-ICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQ 86
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE-----GNAAA 116
PN EF I+F A+++A ++ E ++ + KLL+ + N
Sbjct: 87 LPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFI 146
Query: 117 QAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRP 176
+ L ++ L + + +VA F + G+T P
Sbjct: 147 DSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPA 235
K +P T N+ SV + L + + LP H + G L AG V +
Sbjct: 207 KLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM-- 264
Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
A + + ++ + VP+ + L+ A+ + L+ ++ AS +
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLE-KAAQYKDQIQSLKLLQVGGASFPESL 323
Query: 296 LSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVP 353
++ E + + + M E + ++ + GRP+ EI I+DE
Sbjct: 324 ARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDE--QIFTTQGRPISSDDEIKIVDEQYRE 381
Query: 354 QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKEL 412
G G + RGP GY +PE N F ++++GD+ DG L +VGRIK+
Sbjct: 382 VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQ 441
Query: 413 INRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472
INRGGEKI+ E++ ++L HP++ A + D+++GE+ I+ R
Sbjct: 442 INRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHL 501
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515
+ +A +K+P ++ + LP TA GK+ ++ + ++
Sbjct: 502 MELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTTS 544
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 451 bits (1163), Expect = e-154
Identities = 126/498 (25%), Positives = 220/498 (44%), Gaps = 17/498 (3%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
L+Y +++ + A L GI G+ + N E I F A+++ ++
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 91 PDEFEFYLSDSESKLLLTPAE-GNAAAQAAASKLNISHAT---ATLLDADSELTLSLAHS 146
E Y S E LL+ + + + H++ LL+ E L A +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 170
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
+ + + +VA F + GTT PK +P T N+ SV + + T+ +
Sbjct: 171 HPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYL 229
Query: 207 IVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQI 265
+P H + M G L F AG V L A SA+ + + K+ VP +
Sbjct: 230 CAIPAAHNYAMSSPGSLGVFLAGGTVVLAA--DPSATLCFPLIEKHQVNVTALVPPAVSL 287
Query: 266 VLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
L + L+ ++ A L+ + +R+ G + + + M E L++
Sbjct: 288 WLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG--LVNYTR 345
Query: 325 LPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382
L + + G P+ E+ + D G P G G + RGP +GY +P+ N S
Sbjct: 346 LDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 405
Query: 383 AFLF-GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAF 441
AF G++ +GD+ D +GY+ + GR K+ INRGGEKI+ E++ +LL HP + A
Sbjct: 406 AFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465
Query: 442 GVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK-KNVAAFKVPKRVFITNELPKTASGKI 500
+ D+ GE+ ++ +E + +V RF + + +A FK+P RV + LP TA GK+
Sbjct: 466 SMEDELMGEKSCAYLVVKEP--LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKV 523
Query: 501 QRRIVSEHFLAQVSAAKV 518
++ + + ++ SA +
Sbjct: 524 DKKQLRQWLASRASAGRA 541
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 447 bits (1153), Expect = e-153
Identities = 124/523 (23%), Positives = 221/523 (42%), Gaps = 17/523 (3%)
Query: 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALT 61
G T LL ++ + A+ G +Y + +R A+ GI D V +
Sbjct: 23 AGETFGDLLRDRAAKYGDRIAI-TCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ 81
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAE---GNAAAQA 118
PN EF + A+ R A ++ E ++ +E+ + P + + A
Sbjct: 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA 141
Query: 119 AASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
+ + ++ ++E L L ++ + ++ SDVA + G+T K
Sbjct: 142 RQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKL 199
Query: 179 VPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM-LAGLLSSFAAGAAVTLPAAG 237
+P T ++ S+ V L S + LP+ H + + G+L AG V L +
Sbjct: 200 IPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL--SP 257
Query: 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
S + + + T VP + + +D + L+ ++ A +
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMD-AASSRRDDLSSLQVLQVGGAKFSAEAAR 316
Query: 298 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQE 355
R++ FG + + + M E + PE+ + G+P+ E + D+ +
Sbjct: 317 RVKAVFGCTLQQVFGMAEGLVNYTRLDDPEE--IIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 356 GGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELIN 414
G G + RGP +GY E N ++F G++ TGDI DGY+ + GR K+ IN
Sbjct: 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434
Query: 415 RGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474
RGGEK++ EV+ LL+HP + A +PD GE IIPR+ + E+ F +
Sbjct: 435 RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLR 493
Query: 475 -KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516
+ +AA+K+P RV P+T GK+ ++ + E ++ A
Sbjct: 494 ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-153
Identities = 136/529 (25%), Positives = 242/529 (45%), Gaps = 42/529 (7%)
Query: 4 VTLIGLLNQVIDQFSSKRAL--------SVSGKFDLTYSRIHELVERAASRLVAAGINAG 55
++L ++ ++F K A+ S + + + I E+ ++ AS + G+ G
Sbjct: 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPE-SMNFLEICEVTKKLASGISRKGVRKG 77
Query: 56 DVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA 115
+ V + PN++++V+ A+ R AT P+N Y E E L+DSE+ L+ +
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137
Query: 116 AQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSR 175
+ K + + +LS + + N DVAL +T GTT
Sbjct: 138 FKPVLEKTGVER---VFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGM 194
Query: 176 PKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPA 235
PKGV LT NLAA+ + L+ D+ V +P+FH L V +
Sbjct: 195 PKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG- 253
Query: 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRFIRSCSAS 290
F+ +++ KY T+ AVP ++++ E L+ + +
Sbjct: 254 --MFNQEMLAENIEKYKGTFSWAVPPALNVLVN----TLESSNKTYDWSYLKVFATGAWP 307
Query: 291 LAPVILSRLEEAFG-------APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQ 342
+AP ++ +L + + + MTEA ++++NP K + G P+
Sbjct: 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP--LRLDKSTTQGVPMSDI 365
Query: 343 EIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-----GWFHTGDIGY 396
E+ ++ E G G GE+ IRGPN+ KGY + N+ + + +F TGD+G+
Sbjct: 366 ELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF 425
Query: 397 FDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAI 456
D +G+LH R+KE+I G I+P E++A+L+ H + G PD++ GE I
Sbjct: 426 IDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFI 485
Query: 457 IPREG--SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + +DEE+++ + ++ ++ +K + V ELP+TASGK+ RR
Sbjct: 486 VLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRR 534
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 442 bits (1138), Expect = e-151
Identities = 127/517 (24%), Positives = 214/517 (41%), Gaps = 25/517 (4%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
T+ +L + + AL+V + LT++ + VE A+RL A G+ VA+ P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
N+ + VI LA+ R A A LN E + E + A S
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
L D E S I +P+ A +TSGTT PK + Q
Sbjct: 123 GARIIFLGDLVRDGEPY-------SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ 175
Query: 184 NNLAASVSNIKSVYKL--TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
+ V + + L + + ++PL+HV G A L+++ A + F
Sbjct: 176 RAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRP 233
Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDR-HVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
Q + + T A PT + A LR + A++ +L +
Sbjct: 234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVH 293
Query: 301 EAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG--- 356
+ + Y TEA + + K G+ P E+ I+ G E
Sbjct: 294 QHLPGEKVNIYGTTEAMNSLYMRQ------PKTGTEMAPGFFSEVRIVRIGGGVDEIVAN 347
Query: 357 GAKGEVCIRGPN-VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINR 415
G +GE+ + + GY N P+A GW+ T D+ + +G + ++GR+ ++I
Sbjct: 348 GEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIIS 407
Query: 416 GGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK 475
GGE I P E++ VL + P + + V G+ D ++G+ + ++PR G + + + FC+
Sbjct: 408 GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467
Query: 476 N-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511
+ +A FK PKR FI ++LPK A K+ RR + + +
Sbjct: 468 SELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 436 bits (1125), Expect = e-149
Identities = 157/522 (30%), Positives = 242/522 (46%), Gaps = 34/522 (6%)
Query: 2 EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
+ + L + + + SSK L +G TY+ + R AS L GI GDV+
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGD-VYTYADVELTARRVASGLNKIGIQQGDVIM 78
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
L P++ EFV+ FL A N TP E + S +KLL+T A +
Sbjct: 79 LFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDF 138
Query: 120 ASKLNISHATATLLDADSELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
A + ++ +D+ + L + +++D N ++ P DV ++SGTT PKG
Sbjct: 139 ARESDVKVM---CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKG 195
Query: 179 VPLTQNNLAASVSNIKSV----YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA-VTL 233
V LT L SV+ D + VLP+FH++ + + +L GA + +
Sbjct: 196 VMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM 255
Query: 234 PAAGRFSASTFWQDMIKYNATWYTAVPTI------HQIVLDRHVAKPEPVYPKLRFIRSC 287
P +F + + KY + VP + + ++ LR I+S
Sbjct: 256 P---KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSS-------LRMIKSG 305
Query: 288 SASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPL--PEDGPHKPGSVGRPV-GQE 343
A L + + F A + + Y MTEA +++ E KPG+ G V E
Sbjct: 306 GAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAE 365
Query: 344 IAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDG 401
+ I+D E G GE+CIRG + KGY N+PEA GW HTGDIGY D D
Sbjct: 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDD 425
Query: 402 YLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461
L +V R+KELI G +++P E++A+L++HP+I+ A G+ D+ GE ++ E
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK 485
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
S E+E+ ++ K V +K KRVF +PK SGKI R+
Sbjct: 486 SQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRK 527
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 429 bits (1106), Expect = e-146
Identities = 127/500 (25%), Positives = 209/500 (41%), Gaps = 22/500 (4%)
Query: 16 QFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAV 75
+ K A TY + E R AS L G++ + + L +TV + FL
Sbjct: 35 TRAGKTAYIDDTG-STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGA 93
Query: 76 IRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN-------ISHA 128
+ A N TP ++ + L+ S ++ ++ A +S
Sbjct: 94 LYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQP 153
Query: 129 TATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA 188
+ + + A D+A +L++SG+T +PKG T NL
Sbjct: 154 RESEPRLAPLFEELIDAAAPAAKAA---ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYW 210
Query: 189 SV-SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQD 247
+ K + + E+D LF +G+ GL + GA L A R +A +
Sbjct: 211 TAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAIL-MAERPTADAIFAR 269
Query: 248 MIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPV 307
++++ T + VPT++ + P +R S +L I R FG +
Sbjct: 270 LVEHRPTVFYGVPTLY-ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEI 328
Query: 308 LEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG 366
L+ TE H+ SN G + G+ GRPV G EI + DE G G G++ I+G
Sbjct: 329 LDGIGSTEMLHIFLSNR---AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKG 385
Query: 367 PNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVD 426
P+ Y NN E +++ FL W +GD +G GR +++ G+ +SP+EV+
Sbjct: 386 PSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVE 445
Query: 427 AVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG---SNIDEEEVLRFCKKNVAAFKVP 483
VL+ H + +A GV + ++ + S I EE+ F K +A K P
Sbjct: 446 MVLVQHDAVLEAAVVGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYP 504
Query: 484 KRVFITNELPKTASGKIQRR 503
+ + ++LPKTA+GKIQR
Sbjct: 505 RDIVFVDDLPKTATGKIQRF 524
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-142
Identities = 128/541 (23%), Positives = 222/541 (41%), Gaps = 40/541 (7%)
Query: 4 VTLIGLLNQVIDQFS---SKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVV 58
T L++ + +++ A + ++TY+ E+ R A + G+N +
Sbjct: 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEV-NITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA 118
+ N+++F + L + AP N Y E ++ S+ ++ +G
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 138
Query: 119 AASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKLTNDP-SDVALFLHT 169
KL I + S + + D +AL +++
Sbjct: 139 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 198
Query: 170 SGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFA 226
SG+T PKGV L S+ + ++ + + V+P H GM L
Sbjct: 199 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 258
Query: 227 AGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----L 281
V + RF F + + Y VPT+ + + K L
Sbjct: 259 GFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLF-SFFAKS-----TLIDKYDLSNL 309
Query: 282 RFIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV 340
I S A L+ + + + F + + Y +TE T + P +G KPG+VG+ V
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP---EGDDKPGAVGKVV 366
Query: 341 -GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYF 397
E ++D + G +GE+C+RGP + GY NNPEA + GW H+GDI Y+
Sbjct: 367 PFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYW 426
Query: 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII 457
D D + +V R+K LI G +++P E++++LL HP+I A G+PDD GE ++
Sbjct: 427 DEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVV 486
Query: 458 PREGSNIDEEEVLRFCKKNVAAFK-VPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516
G + E+E++ + V K + V +E+PK +GK+ R + E +
Sbjct: 487 LEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGG 546
Query: 517 K 517
K
Sbjct: 547 K 547
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 415 bits (1070), Expect = e-140
Identities = 141/537 (26%), Positives = 227/537 (42%), Gaps = 39/537 (7%)
Query: 4 VTLIGLLNQVIDQFSSKRAL----SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
+ L + +++++ A+ +V+G D +Y+ E L G+ +A
Sbjct: 23 GSAGTQLRKYMERYAKLGAIAFTNAVTGV-DYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
L N EF I +A + AP N YT E L S+ ++ + +G
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 120 ASKLNISHATATLLDAD--------SELTLSLAHSESDTNAISKLTNDP-SDVALFLHTS 170
+ L ++ + D VAL +++S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSS 201
Query: 171 GTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSFAA 227
G+T PKGV LT N+ S+ + +++ + + V+P H GM L
Sbjct: 202 GSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICG 261
Query: 228 GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LR 282
V L +F TF + + Y T VPT+ +L++ + K L
Sbjct: 262 FRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLF-AILNKS-----ELLNKYDLSNLV 312
Query: 283 FIRSCSASLAPVILSRLEEAFG-APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV- 340
I S A L+ + + F V + Y +TE T + P +G KPG+ G+ V
Sbjct: 313 EIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASGKVVP 369
Query: 341 GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFD 398
+ ++D + +GEVC++GP + KGY NNPEA K GW HTGDIGY+D
Sbjct: 370 LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
Query: 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIP 458
+ + +V R+K LI G ++ P E+++VLL HP I A GVPD GE ++
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489
Query: 459 REGSNIDEEEVLRFCKKNVAAFK-VPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514
G N+ E+EV+ + V+ K + V +E+PK +GKI R + E V+
Sbjct: 490 ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 409 bits (1052), Expect = e-133
Identities = 152/526 (28%), Positives = 240/526 (45%), Gaps = 34/526 (6%)
Query: 2 EGVTLIGLLNQVIDQFSSKRAL--SVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVA 59
++L + Q I +F++K L +G TYS +H + + A+ G+N DVV
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGH-VYTYSDVHVISRQIAANFHKLGVNQNDVVM 117
Query: 60 LTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAA 119
L PN EFV+ FLA ATA N +TP E S +KL++T A +
Sbjct: 118 LLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPL 177
Query: 120 ASKLNI------SHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTT 173
+ + + + + + T + + I + P DV ++SGTT
Sbjct: 178 QNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTT 237
Query: 174 SRPKGVPLTQNNLAASVSNIKSV----YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229
PKGV LT L SV+ D + VLP+FH++ + + +L GA
Sbjct: 238 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297
Query: 230 A-VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPK-----LRF 283
A + +P +F + + + + T VP I + + + K +R
Sbjct: 298 AILIMP---KFEINLLLELIQRCKVTVAPMVPPIV-LAIAKS-----SETEKYDLSSIRV 348
Query: 284 IRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPL--PEDGPHKPGSVGRPV 340
++S +A L + + F A + + Y MTEA +++ + E P K G+ G V
Sbjct: 349 VKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVV 408
Query: 341 -GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYF 397
E+ I+D + G GE+CIRG + KGY NNP A GW HTGDIG
Sbjct: 409 RNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLI 468
Query: 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII 457
D D L +V R+KELI G +++P E++A+L+ HPDI + ++ GE ++
Sbjct: 469 DDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528
Query: 458 PREGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ S + E++V +F K V +K +VF T +PK SGKI R+
Sbjct: 529 KSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRK 574
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 310 bits (797), Expect = 2e-99
Identities = 111/494 (22%), Positives = 194/494 (39%), Gaps = 30/494 (6%)
Query: 30 DLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAA 88
+ + E ++AA+ L A G+ GD VA+ P E+ ++ L IRA P
Sbjct: 73 MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132
Query: 89 YTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLS---LAH 145
+ + L S++K ++ E AS+ + + + L+ L +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLN 192
Query: 146 SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDST 205
S T+ + + + + TSGT+ PK + ++L L SD
Sbjct: 193 EASTTHHCVETGSQ--EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIM 250
Query: 206 VIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT-WYTAVPTIHQ 264
+ + +L L+ +A GA + +F + + Y A P ++
Sbjct: 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGA-PIVY- 308
Query: 265 IVLDRHVAKPEPVYPKLRFIRSC-SA--SLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
R + + + K +++C + SL P L G + E+Y TE
Sbjct: 309 ----RMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVT-----KGYKN 375
+ KPG +G ++ I+D+ G G +G++ IR + GY +
Sbjct: 365 VSK---TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421
Query: 376 NPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI 435
NP+ + ++ GD G D DGY +GR ++IN G +I P EV+ L+ HP +
Sbjct: 422 NPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV 481
Query: 436 AQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR-----FCKKNVAAFKVPKRVFITN 490
+ PD GE + ++ + E L K A +K P+++
Sbjct: 482 VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVL 541
Query: 491 ELPKTASGKIQRRI 504
LPKT +GKIQR
Sbjct: 542 NLPKTVTGKIQRAK 555
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 301 bits (774), Expect = 5e-96
Identities = 118/505 (23%), Positives = 200/505 (39%), Gaps = 48/505 (9%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
T+ + ++AA+ V GI GD V LT + +F L + + A A P
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSEL--------TL 141
+ + + + K+++ AE + Q + ++
Sbjct: 146 KTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKE 205
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
S +++ D+ L +SGT PK V + K + +
Sbjct: 206 LEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVED 265
Query: 202 SDSTVIVLPLFHVH----------GMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKY 251
+H + L + AG AV + RF A + KY
Sbjct: 266 DG----------LHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKY 315
Query: 252 NAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSA--SLAPVILSRLEEAFGAPVL 308
T + PTI++ ++ ++ L++ A L P + +R E G ++
Sbjct: 316 GVTTFCAP-PTIYRFLIKEDLSHYNF--STLKYA--VVAGEPLNPEVFNRFLEFTGIKLM 370
Query: 309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGP 367
E + TE +++ P KPGS+G+P G +I ++D G E G +GE+ I
Sbjct: 371 EGFGQTETVVTIATFP---WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTM 427
Query: 368 N-----VTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISP 422
+ Y +PE + + G++HTGD+ + D DGYL VGR ++I G K+ P
Sbjct: 428 EGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGP 487
Query: 423 IEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAA 479
EV++ L+ HP + + GVPD G+ I I+ + + E+ K A
Sbjct: 488 FEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAP 547
Query: 480 FKVPKRVFITNELPKTASGKIQRRI 504
+K P+ + ELPKT SGKI+R
Sbjct: 548 YKYPRIIEFVPELPKTISGKIRRVE 572
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 4e-93
Identities = 132/534 (24%), Positives = 225/534 (42%), Gaps = 39/534 (7%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDL---TYSRIHELVERAASRLVAAGINAGDVVALT 61
L L + F K +S ++ TY+ +++ R L A G+ GD VA
Sbjct: 19 NLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78
Query: 62 FPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAAS 121
N + + AV A N +P E + L+ +E K+LL +A
Sbjct: 79 GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG 138
Query: 122 KLNISHATATLLDADSELTLS---LAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
+L + + E L+ E+D + +T+GTT PKG
Sbjct: 139 ELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRV-----PERAACGMAYTTGTTGLPKG 193
Query: 179 VPLT--QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGL-LSSFAAGAAVTLPA 235
V + L + +++ L+E D + V+P+FHV+ L ++ GA LP
Sbjct: 194 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW--CLPYAATLVGAKQVLP- 250
Query: 236 AGRF-SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPV 294
G ++ + T+ VPT+ + D ++ LR + ++
Sbjct: 251 -GPRLDPASLVELFDGEGVTFTAGVPTVWLALAD-YLESTGHRLKTLRRLVVGGSAAPRS 308
Query: 295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPG--------SVGRPV-GQEIA 345
+++R E G V + Y +TE + ++ N + G P+ +
Sbjct: 309 LIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 367
Query: 346 ILDEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGY 402
+ DE G VP++G A GEV ++GP +T GY N EA +SA G+F TGDI +D +GY
Sbjct: 368 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGY 427
Query: 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII-PREG 461
+ + R+K+LI GGE IS ++++ L+ HP + +A +P K+ E A++ PR
Sbjct: 428 VEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGE 486
Query: 462 SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQ----RRIVSEHFLA 511
EE K A +++P E+P+T++GK R ++
Sbjct: 487 KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 540
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 3e-72
Identities = 119/581 (20%), Positives = 227/581 (39%), Gaps = 89/581 (15%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDV 57
++ +L+ ++ +K++ + + +TY ++ + + A+ L A G GD
Sbjct: 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDR 67
Query: 58 VALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFY---LSDSESKLLLTPAEGNA 114
V L F + + FL + A A P+ + +++S+ ++L A+
Sbjct: 68 VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK 127
Query: 115 AAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTS 174
A N + + + L+ + S T+ +D+A +TSG+T
Sbjct: 128 KFTADELNTNPKFLKIPAIALE-SIELNRSSSWQPTSI------KSNDIAFLQYTSGSTM 180
Query: 175 RPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234
PKGV ++ +NL +++ I + + + + LP H G++ +L+ G +
Sbjct: 181 HPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240
Query: 235 AAGRFSAS-TFWQDMI-KYNATWYTAVPT-IHQIVLDRHVAKP----------------E 275
+ F + W I KY AT + P + + R + E
Sbjct: 241 SPFSFLQNPLSWLKHITKYKAT-ISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299
Query: 276 PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPED------- 328
PV + + + + EAF P Y + EAT L++
Sbjct: 300 PVREET--MEHFYQAFKEFGFRK--EAF-YP---CYGLAEATLLVTGGTPGSSYKTLTLA 351
Query: 329 ------------GPHKPG-----SVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVT 370
+ PG S G P+ QE+ I+D + +P + GE+ ++ +V
Sbjct: 352 KEQFQDHRVHFADDNSPGSYKLVSSGNPI-QEVKIIDPDTLIPCDFDQVGEIWVQSNSVA 410
Query: 371 KGYKNNPEANKSAFLF---------GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKIS 421
KGY N PE + AF + TGD+G+ + L++ GRIK+LI G+
Sbjct: 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469
Query: 422 PIEV-DAVLLSHPDIAQ--AVAFGVPDDKYGEE---INCAIIPREGSNIDEEEVLRFCKK 475
P ++ +++ S AF + ++ E + C + R ++ ++ + +
Sbjct: 470 PQDIEFSLMHSPLHHVLGKCAAFVIQEE--HEYKLTVMCEVKNRFMDDVAQDNLFNEIFE 527
Query: 476 NVAA---FKVPKRVFI-TNELPKTASGKIQRRIVSEHFLAQ 512
V +V V I +P T SGKI+R +H L +
Sbjct: 528 LVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 87/436 (19%), Positives = 157/436 (36%), Gaps = 72/436 (16%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
LT+S+++ A L G GD V ++ P +E+V+ FL ++A A PL+
Sbjct: 59 LTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 91 PDEFE---FYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
E LSDS +LT + ++ ++++ D L L +
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP-PSIIEVD-LLDLDAPNGY 175
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT------E 201
+ + A +TSG+T P GV ++ N+ + + S Y
Sbjct: 176 TFKED------EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229
Query: 202 SDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF-WQDMI-KYNATWYTAV 259
+ + V LP +H G++ G+ + G L + F W ++ ++A
Sbjct: 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAA 288
Query: 260 PT-IHQIVLDRHVAKPEPVYP----KLRFIRSCSASLAPVILSRLEEAFGAP-------V 307
P ++ R + + + I S S + + R + F A +
Sbjct: 289 PNFAFELAARR--TTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF-ARFNLQERVI 345
Query: 308 LEAYAMTEATHLMSSN----------------------PLPEDGPHKPGSVGRPVGQEIA 345
+Y + EAT ++++ P G S P +
Sbjct: 346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVR 405
Query: 346 ILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF------------GWFHTG 392
I+D + + G GE+ + G NV GY P+ ++ F W TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 393 DIGYFDSDGYLHLVGR 408
D G+ DG + ++GR
Sbjct: 466 DSGFVT-DGKMFIIGR 480
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 3e-42
Identities = 126/505 (24%), Positives = 196/505 (38%), Gaps = 74/505 (14%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
L+Y EL E A A RL G G VVAL ++E VI L V++A A P++
Sbjct: 490 LSY---RELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546
Query: 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
D + L+DS + LLT Q + T T L D + E
Sbjct: 547 KLPEDRISYMLADSAAACLLT-------HQEMKEQAAELPYTGTTLFIDDQTRF----EE 595
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
++ + + P+D A ++TSGTT +PKG T N+ V ++ ++ D
Sbjct: 596 QASDPATAID--PNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDY-MAFSDQD---- 648
Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
A +L+ A + + +++ N A
Sbjct: 649 TFLSVSNYAFDAFTFDFYASMLN----AARLIIADEHTLLDTERLTDLILQENVNVMFAT 704
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEATH 318
+ ++ D LR I + + + G L Y TE T
Sbjct: 705 TALFNLLTDAGEDWM----KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGT- 759
Query: 319 LMSSNPLPEDGPHKPGSV--GRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKN 375
+ ++ + D P S+ G+P+ + IL+E Q GA GE+CI G V+KGY N
Sbjct: 760 VFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVN 819
Query: 376 NPEANKSAFL---FG----WFHTGDIGYFDSDGYLHLVGRI----KELINRG-----GEK 419
+ K F+ F + TGD+ + DG + GRI K I RG E
Sbjct: 820 RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVK--I-RGHRIELEE- 875
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDEEEVLRFCKKNVA 478
IE L +P + AV + G+ A ++ R + E+V KK +
Sbjct: 876 ---IE--KQLQEYPGVKDAVVV-ADRHESGDASINAYLVNRTQ--LSAEDVKAHLKKQLP 927
Query: 479 AFKVPKRVFITNELPKTASGKIQRR 503
A+ VP+ +ELP T +GK+ +R
Sbjct: 928 AYMVPQTFTFLDELPLTTNGKVNKR 952
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 4e-42
Identities = 102/508 (20%), Positives = 192/508 (37%), Gaps = 73/508 (14%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
+TY +L E + A + + + + + E +I FL ++A P++
Sbjct: 27 ITY---KQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDL 83
Query: 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
+ D + +S +KLLL+ A+ + ++ ++ D+ + H
Sbjct: 84 SIPADRVQRIAENSGAKLLLS-----------ATAVTVTDLPVRIVSEDNLKDIFFTHKG 132
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
+ N + + ++TSG+T PKGV +T N L + + L
Sbjct: 133 NTPNPEHAVK--GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ---- 186
Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
V V + L++ G + + + + + +T+
Sbjct: 187 VFLNQAPFSFDLSVMDIYPSLVT----GGTLWAIDKDMIARPKDLFASLEQSDIQVWTST 242
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEATH 318
P+ ++ L + E + P ++ C L + +L E F + Y TEAT
Sbjct: 243 PSFAEMCLM-EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATV 301
Query: 319 LMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
++ + E+ + S+ PVG + I+ E G G KGE+ I GP+V+ GY
Sbjct: 302 AVTGIHVTEEVLDQYKSL--PVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGY 359
Query: 374 KNNPEANKSAFLFG----WFHTGDIGYFDSDGYLHLVGRI----KELINRG-----GEKI 420
+PE + AF + TGD GY +G L GR+ K + G E
Sbjct: 360 LGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIK--L-HGYRMELEE-- 413
Query: 421 SPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDE----EEVLRFCKK 475
IE L + + AV + A ++P E S E + + +
Sbjct: 414 --IE--HHLRACSYVEGAVIV-PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 476 NVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + +P++ + +P T +GK+ R+
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRK 496
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-41
Identities = 146/552 (26%), Positives = 220/552 (39%), Gaps = 123/552 (22%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R A + + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG A ++ K N+ A E + L + SD
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 N-----------AISKLTN----------DPSDVALF-LHTSGTTSRPKGVPLTQN--NL 186
+ I K + DP LF L+TSG+T +PKGV T +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDP----LFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 187 AASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGAAV- 231
A+ + K V+ D S ++ PL A GA
Sbjct: 284 YAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPL--------------ACGATTL 328
Query: 232 ------TLPAAGRFSASTFWQDMIKYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPKLRF 283
P R Q + K+ YTA PT I R + +
Sbjct: 329 MFEGVPNWPTPARM-----CQVVDKHQVNILYTA-PTAI------RALMAEGDKAIE-GT 375
Query: 284 IRSCSASLAPVILSRL---------EEA-------FG---APVLEAYAMTEAT--HLMSS 322
RS SL R+ EA G PV++ + TE T +++
Sbjct: 376 DRS---SL------RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMIT- 424
Query: 323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRG--PNVTKGYKNNPEA 379
PLP K GS RP G + A++D G PQEG +G + I P + + E
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHER 483
Query: 380 NK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDI 435
+ S F + +GD D DGY + GR+ +++N G ++ E+++ L++HP I
Sbjct: 484 FEQTYFSTFK-NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 542
Query: 436 AQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKNVAAFKVPKRVFITNEL 492
A+A G+P G+ I + G E EV + +K + P + T+ L
Sbjct: 543 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSL 602
Query: 493 PKTASGKIQRRI 504
PKT SGKI RRI
Sbjct: 603 PKTRSGKIMRRI 614
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-40
Identities = 102/513 (19%), Positives = 181/513 (35%), Gaps = 78/513 (15%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
TY +L + A+ + + + A V + T + + F+A+ ++ P++
Sbjct: 30 RTYG---QLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86
Query: 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
P+ + ++ L++ L I + L L+ E
Sbjct: 87 HSAPERILAIIEIAKPSLIIA---------IEEFPLTIEGISLVSLSEIESAKLA----E 133
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS--NIKSVYKLTESDST 205
+ D + TSGTT +PKGV ++ +NL + + + + + +
Sbjct: 134 MPYERTHSVK--GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQP-- 189
Query: 206 VIVLPLFH-------VHGMLAGLLSSFAAGAA-VTLPAAGRFSASTFWQDMIKYNATWYT 257
+ V L G LP + + + +T
Sbjct: 190 --QMLAQPPYSFDLSVMYWAPTLAL----GGTLFALPKELVADFKQLFTTIAQLPVGIWT 243
Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEA 316
+ P+ + + + P L L +L E F + + AY TEA
Sbjct: 244 STPSFADMAML-SDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302
Query: 317 THLMSSNPLPEDGPHKPGSV--GRPVG-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGY 373
T +S+ + + + G P I+DE G G +GE+ + GP V+KGY
Sbjct: 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGY 362
Query: 374 KNNPEANKSAFL---FG-WFHTGDIGYFDSDGYLHLVGRI----K------ELINRGGEK 419
NNPE AF +HTGDIG D L GR+ K EL +
Sbjct: 363 LNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIEL----ED- 417
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEIN-CA-IIPREGSNIDE-------EEVL 470
+ L P +A AVA +K + N A I+ ++G + +
Sbjct: 418 ---VS--QQLNQSPMVASAVAV-PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIK 471
Query: 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
K ++ ++ +P + + LP T +GKI +
Sbjct: 472 ASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIK 504
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 4e-40
Identities = 111/502 (22%), Positives = 205/502 (40%), Gaps = 74/502 (14%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
LTY HEL +A A + GI +V + +++ I LAV++A P++
Sbjct: 65 LTY---HELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121
Query: 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
Y + ++ L DS++++LLT + ++ + + + ++
Sbjct: 122 EYPKERIQYILDDSQARMLLT-------QKHLVHLIHNIQFNGQVEIFEED---TIKI-R 170
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVI 207
TN +D+A ++TSGTT PKG L ++ ++ +TE D
Sbjct: 171 EGTNLHVPSK--STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKD---- 224
Query: 208 VLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTAV 259
+ F V M LL+ GA++ + F Q + + T T
Sbjct: 225 RIGQFASISFDASVWEMFMALLT----GASLYIILKDTINDFVKFEQYINQKEITVITLP 280
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
PT + + ++ + + ++ +P ++++ +E + AY TE T
Sbjct: 281 PTYVVHLDPERI-------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTIC 331
Query: 320 MSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
++ ++ +G P+ +I I+DE + G GE+CI G + +GY PE
Sbjct: 332 ATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPE 391
Query: 379 ANKSAFLFGWFH-------TGDIGYFDSDGYLHLVGRI----KELINRG-----GEKISP 422
F+ F TGD + SDG + +GRI K I RG E
Sbjct: 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVK--I-RGHRVELEE---- 444
Query: 423 IEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDEEEVLRFCKKNVAAFK 481
+E ++LL H I++ V D + CA + + I E++ +F + + +
Sbjct: 445 VE--SILLKHMYISETAVS-VHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYM 499
Query: 482 VPKRVFITNELPKTASGKIQRR 503
+P +++P T++GKI R+
Sbjct: 500 IPSYFIQLDKMPLTSNGKIDRK 521
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-39
Identities = 101/512 (19%), Positives = 186/512 (36%), Gaps = 82/512 (16%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDV-VALTFPNTVEFVIMFLAVIRARATAAPLN 86
LTY EL E++ A+ + + + ++ FL ++A P++
Sbjct: 27 LTY---QELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVD 83
Query: 87 AAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS 146
+ + + S ++LL+ AA ++ + A+ L +
Sbjct: 84 LSIPSERIAKIIESSGAELLIH---------AAGLSIDAVGQQIQTVSAEELL----ENE 130
Query: 147 ESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTV 206
+ + + ++TSG+T PKGV ++ NL + I + + ++
Sbjct: 131 GGSVSQDQWVK--EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK--- 185
Query: 207 IVLPLFH-------VHGMLAGLLSSFAAGAAVTL-PAAGRFSASTFWQDMIKYNATWYTA 258
+ V + L S G + ++++ K +T+
Sbjct: 186 -IFLNQAPFSFDLSVMDLYPCLQS----GGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS 240
Query: 259 VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAMTEAT 317
P+ Q+ L + + P C L + L E F + Y TEAT
Sbjct: 241 TPSFVQMCLM-DPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299
Query: 318 HLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVPQEGGAKGEVCIRGPNVTKG 372
++S + D + S+ PVG I+DE G P G KGE+ I GP+V++G
Sbjct: 300 VAVTSVEITNDVISRSESL--PVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357
Query: 373 YKNNPE-------ANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI----KELINRG----- 416
Y PE +++ + + TGD G+ DG + GR+ K + G
Sbjct: 358 YLGEPELTEKAFFSHEGQWA---YRTGDAGFI-QDGQIFCQGRLDFQIK--L-HGYRMEL 410
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCA-IIPREGSNIDE----EEVLR 471
E IE + + AV E A I+P E E + +
Sbjct: 411 EE----IE--FHVRQSQYVRSAVVI-PYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKK 463
Query: 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
++ A+ +P++ + + TA+GKI R+
Sbjct: 464 ELAASLPAYMIPRKFIYQDHIQMTANGKIDRK 495
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 92/525 (17%), Positives = 173/525 (32%), Gaps = 97/525 (18%)
Query: 31 LTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNA 87
TY +L E A A+ ++ A + G +A++ ++ + + ++++ T P+ A
Sbjct: 56 WTY---KKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEA 111
Query: 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSE 147
D F L DS + + + + T L + +L+ ++
Sbjct: 112 GLPNDRKSFLLRDSRAAMAFV-------CDNNFDGVELPPETKVLDTKNQSFIENLS-TQ 163
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLA--------ASVSNIKSVYKL 199
++ ++ + A L+TSG+T PKGV ++++NL+ + +L
Sbjct: 164 DTSDILNNYP--ENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221
Query: 200 TESDSTVIVLPL---FHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWY 256
+ + H+ M G + + T
Sbjct: 222 GGVGKFLCLASRAFDVHIGEMFLAWRF----GLCAVTGERLS-MLDDLPRTFRELGVTHA 276
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
VP+ +LD+ PE P L ++ + P + ++ Y TE
Sbjct: 277 GIVPS----LLDQTGLVPEDA-PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV 331
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDE-------IGVPQEGGAKGEVCIRGPN 368
T S+ + D + +G P+ +L G+ GE+ I G
Sbjct: 332 TIGCSAGRILPDSDTRC--IGHPLGDSVAHVLAPGSNEHVKKGMA------GELVIEGSL 383
Query: 369 VTKGYKNNPEANKSAFLFGWFH----TGDIGYFDSDGYLHLVGRI----KELINRG---- 416
V GY N P+A F TGDI D+D + +GR K + RG
Sbjct: 384 VANGYLNRPDAKG--FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVK--V-RGQRLE 438
Query: 417 -GEKISPIEVDAVLLSHPDIAQA----------------VAFGVPDDKYGEEINCAIIPR 459
GE + V+ S V+F
Sbjct: 439 LGE----VS--EVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG--AAVRGELRWIN 490
Query: 460 EGSNIDEEEVLRFCKKNVAAFKVPKRVFITNELP-KTASGKIQRR 503
E + + C++ + A+ VP + + +P + S K +
Sbjct: 491 ENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAK 535
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 6e-34
Identities = 79/511 (15%), Positives = 154/511 (30%), Gaps = 84/511 (16%)
Query: 25 VSGKFDLTYSRIHELVERA---ASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81
+ Y +L++ A + L+ G + + + E + LA++ +
Sbjct: 47 RDRFGSVDY---RQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103
Query: 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL 141
++ + +L+L T T + + +
Sbjct: 104 YLYIDLKQPAAWNAELCRQVDCRLILD-----------------CSTTPTPANGLPCVPV 146
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
+ + A +A +SGTT RPK + T + +S
Sbjct: 147 RHLPAAPASVARPCFA--ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAP 203
Query: 202 SDSTVIVLPLFHVHG-------MLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNAT 254
+ + LL+ G L G Q + + A
Sbjct: 204 QM----RFLVNSPLSFDAATLEIWGALLN----GGCCVLNDLGPLDPGVLRQLIGERGAD 255
Query: 255 WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLE-AYAM 313
++ ++D LR + + L+ + R L Y
Sbjct: 256 SAWLTASLFNTLVDLDPDCL----GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP 311
Query: 314 TEATHLMSSNPLPEDGPHKPGSV--GRPV-GQEIAILDEIGVP-QEGGAKGEVCIRGPNV 369
TE T + + +D + G+ + G + +LDE G E GE+ G +
Sbjct: 312 TENTTFTCCHVVTDDDLE-EDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGL 370
Query: 370 TKGYKNNPEANKSAFL---FG-----WFHTGDIGYFDSDGYLHLVGRI----KELINRG- 416
+GY+N+ +++F+ + + TGD +D G L +GR K + G
Sbjct: 371 AQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVK--L-NGY 427
Query: 417 ----GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472
+E P I V + +++ CA + +
Sbjct: 428 RLDLPA----LE--QRFRRQPGILDCALL-VRERNGVKQLLCAWTG------KADASPQA 474
Query: 473 CKKNVAAFKVPKRVFITNELPKTASGKIQRR 503
+ + ++ P LP TA GK+ R
Sbjct: 475 LLRQLPTWQRPHACVRVEALPLTAHGKLDRA 505
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 3e-31
Identities = 125/565 (22%), Positives = 220/565 (38%), Gaps = 139/565 (24%)
Query: 31 LTYSRIHELVERAASRL-VAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+TY + E V + A L + G+ GD VA+ P E +I LA+ R A + + A +
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-ELTLSLAHSES 148
+ + ++D +SK+++T E N + +K + A L + L + +
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA---LRETPGVRHVLVYRKTNN 230
Query: 149 DT------------NAISKLTN----------DPSDVALF-LHTSGTTSRPKGVPLTQN- 184
+ K DP LF L+TSG+T PKGV +
Sbjct: 231 PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP----LFLLYTSGSTGAPKGVQHSTAG 286
Query: 185 -NLAASVSNIKSVYKLTESD--------------STVIVLPLFHVHGMLAGLLSSFAAGA 229
L A ++ + + + D + V+ PL G
Sbjct: 287 YLLGALLTM-RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL--------------LYGC 331
Query: 230 AV-------TLPAAGRFSASTFWQDMIKYNAT-WYTAVPT-IHQIVLDRHVAKPEPVYPK 280
A P R+ W + ++ T +Y A PT + R + + Y +
Sbjct: 332 ATLVFEGTPAYPNYSRY-----WDIIDEHKVTQFYVA-PTAL------RLLKRAGDSYIE 379
Query: 281 LRFIRSCSASLAPVILSRL---------EEA-------FG---APVLEAYAMTEAT--HL 319
SL R E G P+++ Y TE + HL
Sbjct: 380 -NHSLK---SL------RCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE-SGSHL 428
Query: 320 MSSNPLP-EDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGG-AKGEVCIRG--PNVTKGY 373
++ PL P KPGS P G + +LD G A+G + ++ P+ +
Sbjct: 429 VT--PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI 486
Query: 374 KNNPEANK----SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429
N + + + G++ TGD D DGY+ ++GR+ +++N G ++S E++A +
Sbjct: 487 WKNHDRYLDTYLNPYP-GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI 545
Query: 430 LSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----------EEVLRFCKKNVAA 479
+ P +A+ G DD G+ + ++ + S+ + ++ +K++
Sbjct: 546 IEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGP 605
Query: 480 FKVPKRVFITNELPKTASGKIQRRI 504
F PK + + ++LPKT SGKI RRI
Sbjct: 606 FAAPKLIILVDDLPKTRSGKIMRRI 630
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 79.8 bits (196), Expect = 2e-16
Identities = 32/248 (12%), Positives = 66/248 (26%), Gaps = 32/248 (12%)
Query: 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL---TESDSTVIVLPLF-HV 214
+ GTT PK V + A +S S Y+ S +T+ +P H+
Sbjct: 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHI 148
Query: 215 HGMLAGLLSSFAAGAAVT----------LPAAGRFSASTFWQDMIK---------YNATW 255
G + + G + + G + + + + +
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF 208
Query: 256 YTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF--GAPVLEAYAM 313
P + + L + + L I L + + +Y
Sbjct: 209 LVTTPPVLRE-LLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGS 267
Query: 314 TEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKG 372
T A + S + + ++D E G +G V + +++
Sbjct: 268 TSALGVSRSLLITSESQQ-VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT--HLSPW 324
Query: 373 Y--KNNPE 378
E
Sbjct: 325 AFYPRVAE 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 69/492 (14%), Positives = 124/492 (25%), Gaps = 138/492 (28%)
Query: 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLA 144
+ D + LS E ++ +A + +L TLL E+
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII--MSKDAVSGT--LRLFW-----TLLSKQEEMVQKFV 83
Query: 145 HSESDTN------AISKLTNDPS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 197
N I PS +++ + N VS ++
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYN----VSRLQPYL 138
Query: 198 KLTE-----SDSTVIVLPLFHVHGML-AGLLSSFAAGAAVTLPAAGRFSASTFW------ 245
KL + + ++ + G+L +G + A ++ + FW
Sbjct: 139 KLRQALLELRPAKNVL-----IDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 246 ----QDMIKYNATWYTAVPTIHQIVLDRHVAKP---EPVYPKLRFI---RSCSASLAPVI 295
+ Y P D + +LR + + L ++
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV 249
Query: 296 L-----SRLEEAFG-----------APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVG-- 337
L ++ AF V + + TH+ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--HSMTLTPDEVKSLL 307
Query: 338 -RPVGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGY 396
+ + L P+ EV NP I
Sbjct: 308 LKYLDCRPQDL-----PR------EVL----------TTNP-----------RRLSIIAE 335
Query: 397 FDSDGYLHLVGRIKELINRGGEKISP-IEVDAVLLSHPDIAQA--VAFGV-PDDKYGEEI 452
DG + + +K++ IE +L P + V P
Sbjct: 336 SIRDG----LATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPS------ 384
Query: 453 NCAIIP--------REGSNIDEEEVLRFCKKNVAAFKVPK--RVFITN---ELPKTASGK 499
A IP + D V+ K K PK + I + EL +
Sbjct: 385 --AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 500 IQ--RRIVSEHF 509
R IV +H+
Sbjct: 443 YALHRSIV-DHY 453
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 55/378 (14%), Positives = 116/378 (30%), Gaps = 63/378 (16%)
Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
++ +SGTT +P V T ++ + + + D +
Sbjct: 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG-- 142
Query: 213 HVHGMLAGLLSSFAA----GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
+G+ G L + G V +P G + Q + + P+ + D
Sbjct: 143 --YGLFTGGLGAHYGAERAGLTV-IPFGGGQTEKQ-VQLIQDFRPDIIMVTPSYMLSIAD 198
Query: 269 RHVAKPEPVYPKLRFIRS--CSA-SLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
+ + + P +R A + +E+ G ++ Y ++E ++
Sbjct: 199 --EIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASEC 256
Query: 326 PE--DGPHKPGSVGRPVGQEIAILDEI-----GVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
E DGP + ++ EI G G GE+ T
Sbjct: 257 VETKDGPT--------IWEDHFYP-EIIDPETGEVLPDGELGELV-----FT-------S 295
Query: 379 ANKSAFLFGWFHTGDIGYFD-SDGYLH-----LVGRIKELINRGGEKISPIEVDAVLLSH 432
K A + T D+ + GR +++ G + P +++ LL
Sbjct: 296 LTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ 355
Query: 433 PDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT--- 489
+A + + + + + P + D + + K + +T
Sbjct: 356 RALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIK--SLIGVTAVI 413
Query: 490 -----NELPKTASGKIQR 502
N + ++ GK +R
Sbjct: 414 NVLPVNGIERS-VGKARR 430
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 55/380 (14%), Positives = 123/380 (32%), Gaps = 64/380 (16%)
Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
V +SGTT +P V T ++ + + D T+ +
Sbjct: 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGD-TLHNAFGY 145
Query: 213 HV----HGMLAGLLSSFAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
+ G+ G G V +P +G + Q + + P+ ++D
Sbjct: 146 GLFTGGLGIHYGAE---RLGCMV-VPMSGGQTEKQ-VQLIRDFEPKIILVTPSYMLNLID 200
Query: 269 RHVAKPEPVYPKLRFIRS--CSA-SLAPVILSRLEEAFGAPVLEAYAMTEA--THLMSSN 323
+ + P ++ A + + +E G L+ Y ++E +
Sbjct: 201 --EMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACEC 258
Query: 324 PLPEDGPHKPGSVGRPVGQEIAILDEI-----GVPQEGGAKGEVCIRGPNVTKGYKNNPE 378
+DGP + ++ EI G G++GE+ T
Sbjct: 259 VETKDGPV--------IWEDHFYP-EIIDPVTGEVLPDGSQGELV-----FTS------- 297
Query: 379 ANKSAFLFGWFHTGDIGYFDSD-GYLH-----LVGRIKELINRGGEKISPIEVDAVLLSH 432
K A + T D+ + GR +++ G + P +++ ++++
Sbjct: 298 LTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL 357
Query: 433 PDIAQAVAFGVPDDKYGEE--INCAIIPREGSNIDEEEVLRFCKKNVAAFKVPKRVFIT- 489
P ++ + D + + + + +++ + E ++ K V ++
Sbjct: 358 PLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIK--TMVGVSS 415
Query: 490 -------NELPKTASGKIQR 502
+P TA+GK +R
Sbjct: 416 GVTVLAAGGIPATATGKARR 435
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 66/378 (17%), Positives = 130/378 (34%), Gaps = 61/378 (16%)
Query: 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK---LTESDSTVIVLPLF 212
+ D +SGTT P + +Q++L + + + + ++D
Sbjct: 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG-- 138
Query: 213 HVHGM-LAGLLSSFAA---GAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268
+GM GL + A G +PAA S + + + T A+P+ + +
Sbjct: 139 --YGMFTGGLGFQYGAERLGCLT-VPAAAGNSKRQ-IKFISDFKTTALHAIPSYAIRLAE 194
Query: 269 RHVAKPEPVYPK---LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325
V + E + P+ L+ + + ++E ++ MTE +
Sbjct: 195 --VFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFEC 252
Query: 326 PE-DGPHKPGSVGRPVGQEIAILDEI-----GVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
E +G H E L EI G P G GE+ + T
Sbjct: 253 QEQNGMH---------FWEDCYLVEIIDPETGEPVPEGEIGELVL-----TT-------L 291
Query: 380 NKSAFLFGWFHTGDIGYFDSD----GYLH-----LVGRIKELINRGGEKISPIEVDAVLL 430
++ + T D+ G H + GR ++ G I P++V+ +L+
Sbjct: 292 DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV 351
Query: 431 SHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFK----VPKRV 486
P++ + +E+ + + S + E+ + + + K V +V
Sbjct: 352 QFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKV 411
Query: 487 FIT--NELPKTASGKIQR 502
+ LP++ GK R
Sbjct: 412 KLVKKGSLPQS-EGKAVR 428
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.51 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.5 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 99.09 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 99.06 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 99.04 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.07 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.14 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.07 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 84.35 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 80.32 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 80.31 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-81 Score=642.14 Aligned_cols=503 Identities=31% Similarity=0.466 Sum_probs=435.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.+|+.++|.++++++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 4799999999999999999999863 478999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTNDP 160 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (523)
++|++|.++.+++.+++++++++++|++......+............ ..+........+.+. .......+.....+
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM---CVDSAPDGCLHFSELTQADENEAPQVDISP 177 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEE---ESSCCCTTCEETHHHHTSCGGGCCCCCCCT
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEE---EecCCCCCccCHHHHhhccccccccCCCCc
Confidence 99999999999999999999999999998877766655444332211 111111111111111 11111222334578
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
+++++++|||||||.||+|.++|+++.+.+..... .+++.+++++++.+|++|.+++...++.++..|+++++.+
T Consensus 178 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~- 256 (536)
T 3ni2_A 178 DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP- 256 (536)
T ss_dssp TSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-
T ss_pred cCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-
Confidence 99999999999999999999999999887766543 3467889999999999999999887899999999999987
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccc
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE 315 (523)
.+++..+++.++++++|++.++|+++..+++...... ..++++|.+++||+++++++.+.+++.| ++++++.||+||
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE 334 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGG-SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGG
T ss_pred -CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccccc-CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccc
Confidence 6789999999999999999999999999988754333 4578999999999999999999999999 899999999999
Q ss_pred cccccccCCC--CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeee
Q 009867 316 ATHLMSSNPL--PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390 (523)
Q Consensus 316 ~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~ 390 (523)
++.+++.+.. ........+++|+| ++++++++| ++|.+++.|+.|||+++|++++.||+++++.+++.| .+|||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~ 414 (536)
T 3ni2_A 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414 (536)
T ss_dssp GSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEE
T ss_pred cchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceE
Confidence 9977654421 12234466789999 799999999 779999999999999999999999999999999999 689999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++...+.++++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 494 (536)
T 3ni2_A 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIK 494 (536)
T ss_dssp EEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHH
T ss_pred cccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999888888899999
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 495 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 495 QYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp HHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred HHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999999999999999999999999999988754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-81 Score=637.22 Aligned_cols=499 Identities=29% Similarity=0.490 Sum_probs=428.8
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
..|+.++|.++|+++|+++|+++.+. .++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 94 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94 (517)
T ss_dssp GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 57999999999999999999998752 38999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-cccccccccCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISKLTNDP 160 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (523)
++|++|.++.+++.+++++++++++|++......+.................... .+... .......+.....+
T Consensus 95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 169 (517)
T 3r44_A 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD-----SLAERLRSAAADEPAVECGG 169 (517)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHH-----HHHHHHHHCCCCCCCCCCCT
T ss_pred EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcc-----cHHHHhhccCcCCCCCCCCC
Confidence 9999999999999999999999999999887766655544332211111111000 00000 01111122334567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
+++++++|||||||.||+|.++|+++.+.+..+...+++.++|+++..+|++|..++...++..+ .|+++++.+ .++
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~--~~~ 246 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP--QFD 246 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS--SCC
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC--CCC
Confidence 99999999999999999999999999999999889999999999999999999999877555555 899998877 679
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 320 (523)
+..+++.++++++|++.++|+++..+.+...... .+++++|.+++||+++++++.+.+.+. ++++++.||+||+++.+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE-LDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-CCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc-CCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccce
Confidence 9999999999999999999999999987654322 346899999999999999999999876 99999999999998776
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~ 399 (523)
+.... .+.....+++|+| ++.+++++|+++.+++.| .|||+++|++++.||+++++.+++.|.+|||+|||+|++++
T Consensus 325 ~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~ 402 (517)
T 3r44_A 325 TLLLS-EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD 402 (517)
T ss_dssp EEECG-GGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT
T ss_pred eecCC-ccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC
Confidence 65432 2224456789999 789999999999999988 89999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcC
Q 009867 400 DGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAA 479 (523)
Q Consensus 400 ~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 479 (523)
||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.+++ ..++...+.++++++++++|+.
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~ 481 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLAR 481 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCG
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999888787777777 5566667889999999999999
Q ss_pred CCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 480 FKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 480 ~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
|++|..++++++||+|++||++|++|+++|.+.+.
T Consensus 482 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 482 YKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp GGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred CCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999987653
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-81 Score=635.47 Aligned_cols=505 Identities=25% Similarity=0.385 Sum_probs=429.8
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+..|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCC-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45799999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchh-----HHHHHHhhcc-cccceeeeecCCccccccccccccccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA-----AAQAAASKLN-ISHATATLLDADSELTLSLAHSESDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (523)
++|++|.++.+++.+++++++++++|+++.... .........+ +.... ..... ......... .......
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~--~~~~~~~ 176 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII--VAGEA-EEFLPLEDL--HTEPVKL 176 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEE--EESCC-TTSEEGGGC--CCCCCCC
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEE--EcCCc-cchhhhhhc--ccccccc
Confidence 999999999999999999999999999876421 2222222221 11111 11110 000000000 0011112
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~ 234 (523)
....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+++.. .++.++..|+++++.
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3456789999999999999999999999999999888888889999999999999999999875 688999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ .+++..+++.++++++|+++++|+++..+++...... .+++++|.+++||+++++++.+++.+.+|+++++.||+|
T Consensus 257 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T 333 (539)
T 1mdb_A 257 P--SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA 333 (539)
T ss_dssp S--SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECT
T ss_pred C--CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCC
Confidence 7 5789999999999999999999999999987654332 357899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccccC-C-cEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeee
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRPV-G-QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHT 391 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~T 391 (523)
|++..+.... .......+++|+|. + .+++++|+++++++.|+.|||+++|++++.||+++++.+++.| .+|||+|
T Consensus 334 E~~~~~~~~~--~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTRLD--DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECCTT--SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccCCC--CcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 9654332211 11112235789983 4 5899999999999999999999999999999999999999999 5899999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ...+.+++++
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~ 490 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKA 490 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888888889988873 4567899999
Q ss_pred HHHhc-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhcC
Q 009867 472 FCKKN-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKV 518 (523)
Q Consensus 472 ~~~~~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~~ 518 (523)
+++++ |+.|++|..++++++||+|++||++|++|++++.++++..|.
T Consensus 491 ~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 491 FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFK 538 (539)
T ss_dssp HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcccc
Confidence 99997 999999999999999999999999999999999999987664
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-81 Score=632.30 Aligned_cols=493 Identities=30% Similarity=0.514 Sum_probs=426.6
Q ss_pred HHHHHHHhhcCCceeEEE--CCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEeeC
Q 009867 8 GLLNQVIDQFSSKRALSV--SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPL 85 (523)
Q Consensus 8 ~~l~~~a~~~p~~~a~~~--~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 85 (523)
++|.+.++++|+++++.. .+++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 578899999999999874 444789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCeEE
Q 009867 86 NAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVAL 165 (523)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (523)
+|.++.+++.+++++++++++|++......+........... . .............. .............++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~a~ 159 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATV--E-TLGPDGRGSLTDAA-AGASEAFATIDRGADDLAA 159 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEE--E-ECCTTSCSHHHHHH-HTSCSCCCCCCCCTTSEEE
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceE--E-EecCCcccccchhh-hcCCCCcCcCCCCCCCeEE
Confidence 999999999999999999999999876655544433332211 1 11111000000000 0111112223456799999
Q ss_pred EEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChhHHH
Q 009867 166 FLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTFW 245 (523)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 245 (523)
++|||||||.||+|.++|+++.+........+++.++|+++..+|++|.+|+...++.++..|+++++.+ .+++..++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~--~~~~~~~~ 237 (503)
T 4fuq_A 160 ILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP--KFDPDKIL 237 (503)
T ss_dssp EEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS--SCCHHHHH
T ss_pred EEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998766778899999999877 67899999
Q ss_pred HHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccccCCC
Q 009867 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPL 325 (523)
Q Consensus 246 ~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~ 325 (523)
+.++ ++|+++++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+++++++.||+||++..+....
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~- 313 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTK-ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY- 313 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCST-TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccc-cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-
Confidence 9998 89999999999999988765433 4578999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-CCeeeeCceeeEcCCCc
Q 009867 326 PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGY 402 (523)
Q Consensus 326 ~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~ 402 (523)
......+++|+| ++++++++| ++|++++.|+.|||+++|++++.||+++++.+++.|. +|||+|||+|+++++|.
T Consensus 314 --~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 314 --DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY 391 (503)
T ss_dssp --SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred --CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence 234456789999 799999999 8999999999999999999999999999999999995 89999999999999999
Q ss_pred EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCcCCCC
Q 009867 403 LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNVAAFKV 482 (523)
Q Consensus 403 ~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 482 (523)
+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.++++++++++|+.|++
T Consensus 392 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~ 471 (503)
T 4fuq_A 392 VHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKM 471 (503)
T ss_dssp EEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGC
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999888999999999888888999999999999999999
Q ss_pred CcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 483 PKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 483 p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
|..++++++||+|++||++|++|+++|.+.
T Consensus 472 P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 472 PKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp CSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999999999999999999999999998764
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-80 Score=637.79 Aligned_cols=504 Identities=24% Similarity=0.381 Sum_probs=410.5
Q ss_pred CCHH-HHHHHHHhhcCCceeEEEC----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 4 VTLI-GLLNQVIDQFSSKRALSVS----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 4 ~ti~-~~l~~~a~~~p~~~a~~~~----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
.|+. ++|+.+|+++|+++|+++. +.+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 4666 9999999999999999863 1268999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch--hHHHHHHhhcccc-cceeeeecCCcccccccccc---ccccc-
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN--AAAQAAASKLNIS-HATATLLDADSELTLSLAHS---ESDTN- 151 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~- 151 (523)
|++++|+++.++.+++.+++++++++++|++.+.. ..+.......... ...+.+..........+... .....
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999987765 4444443332211 11111111101111111100 00000
Q ss_pred -ccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcE
Q 009867 152 -AISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAA 230 (523)
Q Consensus 152 -~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 230 (523)
........++++++++|||||||.||+|.++|.++...+.......++.++++++...|++|..+.+..++.++..|++
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 1111245689999999999999999999999999888777766677889999999999999988887778899999999
Q ss_pred EEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecc
Q 009867 231 VTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEA 310 (523)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~ 310 (523)
+++.+...+++..+++.++++++|+++++|++++.|++... ...+++++|.+++||+++++++.+++.+.+|+++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~ 372 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEG 372 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-----CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc--ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecc
Confidence 99876557899999999999999999999999999987632 2245789999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC-----CCcccccCCChhhhhhhc
Q 009867 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG-----PNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 311 yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~~ 384 (523)
||+||++..++..+. .....+++|+| ++++++++|++|++++.|+.|||+++| ++++.||+++++.+++.|
T Consensus 373 YG~TE~~~~~~~~~~---~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f 449 (580)
T 3etc_A 373 FGQTETVVTIATFPW---MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449 (580)
T ss_dssp ECCTTSSCCEECCTT---SCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE
T ss_pred cccccccceeecCCC---CCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc
Confidence 999999876665432 23466789999 799999999999999999999999997 789999999999999999
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++...
T Consensus 450 ~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~ 529 (580)
T 3etc_A 450 HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP 529 (580)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999877544
Q ss_pred C---HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 465 D---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 465 ~---~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+ .++|+++++++|++|++|..++++++||+|++||++|++|++++.++
T Consensus 530 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 530 SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp CHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred CHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 4 36899999999999999999999999999999999999999988653
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-80 Score=626.11 Aligned_cols=490 Identities=25% Similarity=0.389 Sum_probs=418.4
Q ss_pred CCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+|+.++|.++++++|+++|+.+.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 589999999999999999999862 2689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEe--cccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLT--PAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP 160 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
+|++|.++.+++.+++++++++++++ +......+.. ...... .+.+.+. ...................+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 152 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ--SGSGAR--IIFLGDL-----VRDGEPYSYGPPIEDPQREP 152 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH--HCCCCE--EEEGGGT-----EETTEECCCSCCCCCCCCCT
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh--ccccce--eEEecch-----hhcCcccccCCccCCCCCCC
Confidence 99999999999999999999999999 6554332211 101111 0000000 00000000001111133467
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhcc--CCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL--TESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR 238 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~ 238 (523)
+++++++|||||||.||+|.++|+++.+.+......+++ .+++++++.+|++|..++...++.++..|+++++.+ .
T Consensus 153 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~ 230 (504)
T 1t5h_X 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--E 230 (504)
T ss_dssp TSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS--S
T ss_pred CCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC--C
Confidence 899999999999999999999999999988888777888 889999999999999998767889999999999987 5
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
+++..+++.++++++|+++++|+++..+++.... .....++++|.+++||+++++++.+.+.+.+++.+++.||+||++
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM 310 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc
Confidence 7899999999999999999999999999887532 233457899999999999999999999999999999999999994
Q ss_pred cccccCCCCCCCCCCCCCcccc-CCcEEEEECCCC---CccCCCceeEEEEe-CCCcccccCCChhhhhhhccCCeeeeC
Q 009867 318 HLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIG---VPQEGGAKGEVCIR-GPNVTKGYKNNPEANKSAFLFGWFHTG 392 (523)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~TG 392 (523)
...... ....+++|.| ++.+++++|..+ ++++.|+.|||+++ |++++.||+++++.+++.|.+|||+||
T Consensus 311 ~~~~~~------~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG 384 (504)
T 1t5h_X 311 NSLYMR------QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384 (504)
T ss_dssp EEEEEE------SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred cccccc------CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence 322211 2345678888 789999999777 89999999999999 899999999999999999999999999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++
T Consensus 385 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~ 464 (504)
T 1t5h_X 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464 (504)
T ss_dssp EEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHH
T ss_pred cEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999988777788999999
Q ss_pred HHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 473 CKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 473 ~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++ +|+.|++|+.++++++||+|++||++|++|++++.
T Consensus 465 ~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 465 CRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 998 99999999999999999999999999999998874
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-81 Score=638.93 Aligned_cols=504 Identities=27% Similarity=0.455 Sum_probs=396.5
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK-------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
+.+|+.++|.++|+++|+++|+++.++ +++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 96 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYA 96 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999997662 5899999999999999999999999999999999999999999999
Q ss_pred HHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-ccccccc
Q 009867 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAI 153 (523)
Q Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (523)
|+++|++++|++|.++.+++.+++++++++++|++......+.............. ..... . .+.+. .......
T Consensus 97 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~ 171 (549)
T 3g7s_A 97 LWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFV--VGGEV-N--SLSEVMDSGSEDF 171 (549)
T ss_dssp HHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEE--ETCSS-S--CHHHHHHHSCSCC
T ss_pred HHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEE--eCCCC-c--CHHHHHhcCcccc
Confidence 99999999999999999999999999999999999887776666555544332221 11110 0 00000 0000111
Q ss_pred ccCCC-CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEE
Q 009867 154 SKLTN-DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVT 232 (523)
Q Consensus 154 ~~~~~-~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 232 (523)
..... .++++++++|||||||.||+|.++|.++...+......+++.++|+++..+|++|..++.. ++.++..|++++
T Consensus 172 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~ 250 (549)
T 3g7s_A 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYV 250 (549)
T ss_dssp CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEE
T ss_pred ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEE
Confidence 11122 3489999999999999999999999999999999888999999999999999999999877 888899999999
Q ss_pred eCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHH----hC---
Q 009867 233 LPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEA----FG--- 304 (523)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~----~~--- 304 (523)
+.+ .+++..+++.++++++|+++++|+++..+++...... ..+++++|.+++||+++++++.+.+.+. ++
T Consensus 251 ~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 328 (549)
T 3g7s_A 251 VMG--MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPR 328 (549)
T ss_dssp EES--SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTT
T ss_pred EcC--CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCcc
Confidence 877 7799999999999999999999999999988754332 2457899999999999999999999988 66
Q ss_pred CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 305 ~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
+++++.||+||++.+++..... ......++|+| ++++++++| ++|++++.|+.|||+|+|++++.||+++++.+++
T Consensus 329 ~~~~~~YG~TE~~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 329 LRHNQIWGMTEACPMVTTNPPL--RLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp CEEEEEEECGGGSSEEEECCGG--GGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred ccccceEeccccchhhhcCCcc--ccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhh
Confidence 8899999999999877765422 22456788999 799999999 9999999999999999999999999999999999
Q ss_pred hc---cCC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEE
Q 009867 383 AF---LFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAII 457 (523)
Q Consensus 383 ~~---~~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 457 (523)
.| .+| ||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++
T Consensus 407 ~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 486 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV 486 (549)
T ss_dssp SEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEE
T ss_pred hhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEE
Confidence 98 677 9999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eCCC--CCCCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 458 PREG--SNIDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 458 ~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
..++ ...+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.-.+
T Consensus 487 ~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 487 LKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp ECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC----------------------
T ss_pred ECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 8876 567889999999999999999999999999999999999999999998876543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-79 Score=624.84 Aligned_cols=504 Identities=27% Similarity=0.395 Sum_probs=428.6
Q ss_pred CCHHH-HHHHHHhhcCCceeEEEC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 4 VTLIG-LLNQVIDQFSSKRALSVS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 4 ~ti~~-~l~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.|+.+ ++.++++++ +++|+++. +++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 899999999 99999974 3478999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCc-ccccccccc--cccccccccCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADS-ELTLSLAHS--ESDTNAISKLTN 158 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 158 (523)
++|++|.++.+++.+++++++++++|+++.....+.......+.....+.+..... .....+... .......+....
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSF 183 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccc
Confidence 99999999999999999999999999998876665544433221111111111100 000000000 000000000011
Q ss_pred ------CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 159 ------DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 159 ------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
.++++++++|||||||.||+|.++|+++...+...... +++.++++++..+|++|.+++...++.++ .|+
T Consensus 184 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~ 262 (548)
T 2d1s_A 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGF 262 (548)
T ss_dssp CCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTC
T ss_pred cccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCc
Confidence 23899999999999999999999999999888776655 67889999999999999999877677778 999
Q ss_pred EEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee
Q 009867 230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL 308 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~ 308 (523)
++++.+ .+++..+++.++++++|+++++|+++..+.+...... ..++++|.+++||+++++++.+++.+.| +++++
T Consensus 263 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~ 339 (548)
T 2d1s_A 263 RVVMLT--KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK-YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR 339 (548)
T ss_dssp EEEECC--CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGG-SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCE
T ss_pred EEEEcC--CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccc-ccccceeEEEEcCccCCHHHHHHHHHHcCCCcee
Confidence 999987 6799999999999999999999999999987654322 3478999999999999999999999999 68899
Q ss_pred ccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-c
Q 009867 309 EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-L 385 (523)
Q Consensus 309 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~ 385 (523)
+.||+||++..++.... .....+++|+| ++.+++++| +++++++.|+.|||+++|++++.||+++++.+.+.| .
T Consensus 340 ~~YG~TE~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 416 (548)
T 2d1s_A 340 QGYGLTETTSAIIITPE---GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416 (548)
T ss_dssp EEEECGGGSSEEEECCT---TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred eccccccccceeeecCc---ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccC
Confidence 99999999977766432 23456789999 799999999 899999999999999999999999999999999999 6
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (523)
+|||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++...+
T Consensus 417 ~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~ 496 (548)
T 2d1s_A 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT 496 (548)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC
T ss_pred CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999888888899999988877778
Q ss_pred HHHHHHHHHhcCcCCCCCc-EEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 466 EEEVLRFCKKNVAAFKVPK-RVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 466 ~~~l~~~~~~~l~~~~~p~-~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.++++++++++|+.|++|. .++++++||+|++||++|++|++++.+.++.
T Consensus 497 ~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 497 EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 8999999999999999999 9999999999999999999999999887763
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-80 Score=630.50 Aligned_cols=499 Identities=30% Similarity=0.464 Sum_probs=327.4
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+++|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVDG-VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CcCCHHHHHHHHHHHCCCceEEEECC-cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 57899999999999999999999877 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCC
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS 161 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (523)
++|++|.++.+++.+++++++++++|++......+.................+. .......... ............++
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDG-SGPFAPFKDL-ASDTPFSAPEFGAA 160 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCC-CSSCEEGGGT-CCCSCCCCCCCCTT
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCC-CcChhhHhhc-cCCCCCCcCCCCcc
Confidence 999999999999999999999999999988776644433332211111111110 0000000000 11112223345789
Q ss_pred CeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCCh
Q 009867 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241 (523)
Q Consensus 162 ~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 241 (523)
++++++|||||||.||+|.++|+++...+......++++++|+++..+|++|.+++...+...+..|+++++. .+++
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~---~~~~ 237 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---KFDP 237 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS---SCCH
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec---ccCH
Confidence 9999999999999999999999999999999999999999999999999999999887555555555555554 5799
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|+++++|+++..+++... ...+++++.+..+|++ +..+.+.+.+ ++++++.||+||+++++
T Consensus 238 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 311 (509)
T 3ivr_A 238 AQAARDIEAHKVTVMAEFAPMLGNILDQAA---PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS 311 (509)
T ss_dssp HHHHHHHHHHTCCEEEEETTHHHHHHHHCC---GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred HHHHHHHHHHCCcEEEecHHHHHHHHhccc---ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence 999999999999999999999999988762 2347899999999986 8888888888 99999999999999876
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS 399 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~ 399 (523)
+..... .....+|+| ++++++++|+++++++.|+.|||+++|++++.||+++++.+++.|.+|||+|||+|++++
T Consensus 312 ~~~~~~----~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~ 387 (509)
T 3ivr_A 312 TFAPYR----DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA 387 (509)
T ss_dssp EEEEGG----GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT
T ss_pred ccCccc----cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC
Confidence 665422 123448999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccc--ccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 009867 400 DGYLHLVGRI--KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKNV 477 (523)
Q Consensus 400 ~g~~~~~GR~--~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l 477 (523)
+|.+++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++..++...+.++++++++++|
T Consensus 388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L 467 (509)
T 3ivr_A 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLI 467 (509)
T ss_dssp TSCEEEEEEC----------------------------------------------------------------------
T ss_pred CceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 9999999999 99999999999999999999999999999999999988888899999988877778889999999999
Q ss_pred cCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhh
Q 009867 478 AAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516 (523)
Q Consensus 478 ~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~ 516 (523)
+.|++|..++++++||+|++||++|++|++++.+.-.+.
T Consensus 468 ~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 468 ARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp ---------------------------------------
T ss_pred cccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 999999999999999999999999999999998765543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-81 Score=637.24 Aligned_cols=501 Identities=23% Similarity=0.366 Sum_probs=332.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICGE-RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEcCC-CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 5789999999999999999999887 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcccccceeeeecCCccc-ccccccccccccccccC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSEL-TLSLAHSESDTNAISKL 156 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 156 (523)
+|+++.++.+++.+++++++++++|++.... .......................... ...+... .........
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 186 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIET-PAETFVDFS 186 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHS-CCSSCCCCC
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhc-ccccccccc
Confidence 9999999999999999999999999987654 22222222211111111111110000 0000000 011111113
Q ss_pred CCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeCC
Q 009867 157 TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLPA 235 (523)
Q Consensus 157 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~~ 235 (523)
...++++++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .++.++..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 446789999999999999999999999999999999999999999999999999999988875 5888999999999987
Q ss_pred CCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccc
Q 009867 236 AGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE 315 (523)
Q Consensus 236 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE 315 (523)
.+++..+++.++++++|+++++|+++..+++...... ..++++|.+++||+++++++.+.+.+.+++++++.||+||
T Consensus 267 --~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 343 (544)
T 3o83_A 267 --NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE 343 (544)
T ss_dssp --SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTT
T ss_pred --CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccc
Confidence 5689999999999999999999999999988755432 3468999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeC
Q 009867 316 ATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTG 392 (523)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TG 392 (523)
++..+.... ........++|+| ++.+++++|+++++++.|+.|||+++|++++.||+++++.++..| .+|||+||
T Consensus 344 ~~~~~~~~~--~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 421 (544)
T 3o83_A 344 GLVNYTRLD--DSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421 (544)
T ss_dssp SCEEECCTT--SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE
T ss_pred ccceeecCC--CchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC
Confidence 875444322 1111223568888 478999999999999999999999999999999999999999999 68999999
Q ss_pred ceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 009867 393 DIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRF 472 (523)
Q Consensus 393 D~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 472 (523)
|+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ...+.++++++
T Consensus 422 Dlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~ 500 (544)
T 3o83_A 422 DLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRH 500 (544)
T ss_dssp EEEEECTTSCEEEEEEEC--------------------------------------------------------------
T ss_pred CEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888765 34566789999
Q ss_pred HHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHH
Q 009867 473 CKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLA 511 (523)
Q Consensus 473 ~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~ 511 (523)
+++ .|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 501 ~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 501 LMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------
T ss_pred HHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 998 799999999999999999999999999999998865
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-80 Score=631.40 Aligned_cols=506 Identities=25% Similarity=0.384 Sum_probs=386.2
Q ss_pred CCCHHHHHHHHHhhcCCceeEEE---CCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSV---SGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~---~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
..|+.++|.++++++|+++|+++ .+++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 46899999999999999999985 234789999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCC
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTND 159 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
++++|++|.++.+++.+++++++++++|++++....+...............+..........+........ ......
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 174 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--DPVRVP 174 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC--CCCCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC--CcccCC
Confidence 999999999999999999999999999999877665554443322111111111110000001110000000 012345
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHH--HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
++++++++|||||||.||+|.++|+++...... ....+++.++|++++.+|++|..++.. ++.++..|+++++.+.
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~- 252 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGP- 252 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTT-
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCC-
Confidence 789999999999999999999999999876655 234567889999999999999998854 7788999999998763
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEAT 317 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~ 317 (523)
.+++..+++.++++++|+++++|+++..|++...... ..++++|.+++||+++++++.+++ +.+|+++++.||+||++
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~ 330 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETS 330 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGS
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccc
Confidence 4689999999999999999999999999987654322 346899999999999999999999 67899999999999999
Q ss_pred cccccCCCCCCC--------CCCCCCcccc-CCcEEEEECCCCCccCC--CceeEEEEeCCCcccccCCChhhhhhhcc-
Q 009867 318 HLMSSNPLPEDG--------PHKPGSVGRP-VGQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAFL- 385 (523)
Q Consensus 318 ~~~~~~~~~~~~--------~~~~~~~g~~-~~~~~~i~d~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~- 385 (523)
.+++........ .....++|+| ++++++++|++|++++. ++.|||+++||+++.||+++++.+++.|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 410 (541)
T 1v25_A 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP 410 (541)
T ss_dssp SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence 877665422100 0124678999 79999999999999884 36899999999999999999999999996
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID 465 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 465 (523)
+|||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++. +...+
T Consensus 411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~ 489 (541)
T 1v25_A 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT 489 (541)
T ss_dssp TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888888888876 44456
Q ss_pred HHHHHHHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 466 EEEVLRFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 466 ~~~l~~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.+++++++++ +|+.|++|..++++++||+|++||++|++|++++.+++++
T Consensus 490 ~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 490 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 540 (541)
T ss_dssp -----------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence 7889999999 8999999999999999999999999999999998877654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-80 Score=630.99 Aligned_cols=509 Identities=25% Similarity=0.413 Sum_probs=328.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEE---EC-CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALS---VS-GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~---~~-~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
+..|+.++|.++++++|+++|++ +. +++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 56899999999999999999976 32 237899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcc-cccccccc---ccc----
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSE-LTLSLAHS---ESD---- 149 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~---- 149 (523)
+|++++|++|.++.+++.+++++++++++|++......+.......+.....+........ ....+... ...
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN 177 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCC
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhcccccccc
Confidence 9999999999999999999999999999999998877766665554432222211111100 00000000 000
Q ss_pred -ccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH---hccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 150 -TNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV---YKLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 150 -~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
....+.....++++++++|||||||.||+|.++|+++...+...... +++.+++++++.+|++|.+++.. .+.++
T Consensus 178 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l 256 (550)
T 3rix_A 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYL 256 (550)
T ss_dssp TTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHH
T ss_pred ccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH-HHHHH
Confidence 01111122345789999999999999999999999998887766544 46788999999999999999865 77889
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..|+++++.+ .+++..+++.++++++|+++++|+++..+++...... ..++++|.+++||+++++++.+++.+.++.
T Consensus 257 ~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 333 (550)
T 3rix_A 257 ICGFRVVLMY--RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKRFHL 333 (550)
T ss_dssp HHTCEEEECS--SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGG-SCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred HcCCEEEEeC--CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccc-cCcccccEEEEecCCCCHHHHHHHHHHcCC
Confidence 9999999987 6789999999999999999999999999998765433 457899999999999999999999999987
Q ss_pred c-eeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 306 P-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 306 ~-v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
. +++.||+||+++.++.... .....+++|+| ++++++++| +++++++.|+.|||+|+|++++.||+++++.++.
T Consensus 334 ~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (550)
T 3rix_A 334 PGIRQGYGLTETTSAILITPE---GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410 (550)
T ss_dssp SCCEEEEECGGGSSEEEECCT---TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred CccccccCcCccccceecCCC---CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhh
Confidence 5 8999999999987776543 23456789999 799999999 7799999999999999999999999999999999
Q ss_pred hc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 383 ~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
.| .+|||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|+..++
T Consensus 411 ~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~ 490 (550)
T 3rix_A 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490 (550)
T ss_dssp HBCTTSCEEEEEEEEECTTCCEEEC-------------------------------------------------------
T ss_pred hcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC
Confidence 98 78999999999999999999999999999999999999999999999999999999999998888889999998888
Q ss_pred CCCCHHHHHHHHHhcCcCCCCC-cEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhc
Q 009867 462 SNIDEEEVLRFCKKNVAAFKVP-KRVFITNELPKTASGKIQRRIVSEHFLAQVSAAK 517 (523)
Q Consensus 462 ~~~~~~~l~~~~~~~l~~~~~p-~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~ 517 (523)
...+.++++++++++++.++.| ..++++++||+|++||++|++|++++.+...+.+
T Consensus 491 ~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 491 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccccc
Confidence 7778889999999999988655 4699999999999999999999999987665443
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=622.08 Aligned_cols=502 Identities=22% Similarity=0.318 Sum_probs=422.1
Q ss_pred CHHHHHHHHHhh-----cCCceeEEECC----cccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHH
Q 009867 5 TLIGLLNQVIDQ-----FSSKRALSVSG----KFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLA 74 (523)
Q Consensus 5 ti~~~l~~~a~~-----~p~~~a~~~~~----~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la 74 (523)
++.++|.+++++ +|+++|+++.+ .+++||+||.++++++|++|++. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999999 99999998732 36899999999999999999998 999999999999999999999999
Q ss_pred HHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccc-ccccccc
Q 009867 75 VIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAI 153 (523)
Q Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (523)
|+++|++++|+++.++.+++.+++++++++++|+++.....+.......+.......+..........+.+. .......
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCC
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcccccc
Confidence 999999999999999999999999999999999998876665544333221111111111000000001000 0001111
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHH--HHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEE
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAA--SVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAV 231 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~ 231 (523)
......++++++++|||||||.||+|.++|+ ++. ..... ..+++.++|+++...|++|..++...++.++..|+++
T Consensus 199 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 276 (570)
T 3c5e_A 199 HCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACT 276 (570)
T ss_dssp CCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEE
T ss_pred cccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceE
Confidence 1233467899999999999999999999999 554 33343 6678899999999999999999887788999999999
Q ss_pred EeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccc
Q 009867 232 TLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311 (523)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~y 311 (523)
++.....+++..+++.++++++|+++++|+++..+++... ....++++|.++++|+++++++.+.+.+.+|+++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~Y 354 (570)
T 3c5e_A 277 FVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL--SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESY 354 (570)
T ss_dssp EEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT--TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEE
T ss_pred EEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc--cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhcc
Confidence 9876557799999999999999999999999999987632 22347899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEe-----CCCcccccCCChhhhhhhcc
Q 009867 312 AMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIR-----GPNVTKGYKNNPEANKSAFL 385 (523)
Q Consensus 312 G~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~ 385 (523)
|+||++..++.... .....+++|+| ++++++++|++|++++.|+.|||+++ |++++.||+++++.+.+.|.
T Consensus 355 G~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~ 431 (570)
T 3c5e_A 355 GQTETGLTCMVSKT---MKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR 431 (570)
T ss_dssp EETTTEEEEECCTT---SCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE
T ss_pred chhhcccceecCcc---cccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc
Confidence 99999876554432 23456789999 78999999999999999999999999 99999999999999999999
Q ss_pred CCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC--
Q 009867 386 FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN-- 463 (523)
Q Consensus 386 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-- 463 (523)
++||+|||++++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++.++..
T Consensus 432 ~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~ 511 (570)
T 3c5e_A 432 GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSH 511 (570)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTS
T ss_pred CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCc
Confidence 999999999999999999999999999999999999999999999999999999999998888888889998876531
Q ss_pred C---CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 464 I---DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 464 ~---~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
. ..++|+++++++|+.|++|..++++++||+|++||++|++|++.+.+.-
T Consensus 512 ~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 512 DPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhh
Confidence 1 2467999999999999999999999999999999999999999886543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-78 Score=627.32 Aligned_cols=507 Identities=24% Similarity=0.356 Sum_probs=424.6
Q ss_pred CHHHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhc
Q 009867 5 TLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRAR 79 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 79 (523)
++.++|+++++++|+++|+++. +.+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 4678899999999999999973 23689999999999999999999999999999999999999999999999999
Q ss_pred CEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh---------HHHHHHhhcc---cccceeeeecCCccc------cc
Q 009867 80 ATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLN---ISHATATLLDADSEL------TL 141 (523)
Q Consensus 80 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~------~~ 141 (523)
++++|+++.++.+++.+++++++++++|+++.... .+........ +...+. +....... ..
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-~~~~~~~~~~~~~~~~ 235 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIV-LKRTGSDIDWQEGRDL 235 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEE-ECSSCCCCCCCBTTEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEE-EeCCCCcccccCCCce
Confidence 99999999999999999999999999999876431 2222222211 111111 11100000 00
Q ss_pred cccccc-ccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHH
Q 009867 142 SLAHSE-SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA 219 (523)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 219 (523)
.+.+.. ............++++++++|||||||.||+|+++|.+++.... .....+++.++|++++..|++|..+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~ 315 (652)
T 1pg4_A 236 WWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSY 315 (652)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred eHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHH
Confidence 011100 00111112234578999999999999999999999999876653 4556788999999999999999999877
Q ss_pred HHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHH
Q 009867 220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 220 ~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
.++.++..|+++++.+.. ..++..+++.++++++|+++++|++++.|++.... ....+++++|.++++|+++++++.
T Consensus 316 ~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 395 (652)
T 1pg4_A 316 LLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395 (652)
T ss_dssp TTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHH
Confidence 789999999999997642 25889999999999999999999999999887542 222457899999999999999999
Q ss_pred HHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--CCcc
Q 009867 297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG--PNVT 370 (523)
Q Consensus 297 ~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~ 370 (523)
+++.+.+| +++++.||+||+++.++.... .......+++|+| +|++++++|++|++++.|+.|||+++| |+++
T Consensus 396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~ 474 (652)
T 1pg4_A 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQA 474 (652)
T ss_dssp HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT-TTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCC
T ss_pred HHHHHHhCCCCCcEEccccCcccccceecCCC-CCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchh
Confidence 99999998 899999999999976665432 2223456889999 799999999999999999999999999 7899
Q ss_pred cccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCC
Q 009867 371 KGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK 447 (523)
Q Consensus 371 ~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~ 447 (523)
.||+++++.+...+ .+|||+|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++.
T Consensus 475 ~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~ 554 (652)
T 1pg4_A 475 RTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAI 554 (652)
T ss_dssp CEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETT
T ss_pred hhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCC
Confidence 99999999887765 378999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCC---HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 448 YGEEINCAIIPREGSNID---EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 448 ~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
.++.++++|++.++...+ .++|+++++++|++|++|+.++++++||+|++||++|+.|++.+.+++
T Consensus 555 ~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 555 KGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 888999999998776544 478999999999999999999999999999999999999999998764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-78 Score=616.93 Aligned_cols=494 Identities=19% Similarity=0.300 Sum_probs=417.3
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
||+.++|.++|+++|+++|+++.+ +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 79 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRD-AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCC-ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 689999999999999999999987 6999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCCe
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDV 163 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (523)
|+++.++.+++.++++++++++++++...... ..... ............. .......+.....++++
T Consensus 80 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--------~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~ 146 (512)
T 3fce_A 80 PVDLSIPADRVQRIAENSGAKLLLSATAVTVT--------DLPVR---IVSEDNLKDIFFT--HKGNTPNPEHAVKGDEN 146 (512)
T ss_dssp EEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--------CCSSE---EEETHHHHHHHHH--TTTCCCCGGGSCCTTSE
T ss_pred eeCCCCcHHHHHHHHHhcCCCEEEecCccccc--------ccccc---eechhhhhhhccc--ccccCCCccccCCCCCe
Confidence 99999999999999999999999987543210 00000 0000000000000 01111112234567899
Q ss_pred EEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CChh
Q 009867 164 ALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSAS 242 (523)
Q Consensus 164 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~ 242 (523)
++++|||||||.||+|.++|+++.+.+......+++.++|+++..+|++|..++.. ++.++..|+++++.+... .++.
T Consensus 147 a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~ 225 (512)
T 3fce_A 147 FYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPK 225 (512)
T ss_dssp EEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHH
T ss_pred EEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHHHhhCHH
Confidence 99999999999999999999999999999888999999999999999999998765 889999999999876311 5789
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..++....... ..++++|.++++|+++++++.+++.+.| ++++++.||+||++..++
T Consensus 226 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 304 (512)
T 3fce_A 226 DLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304 (512)
T ss_dssp HHHHHHHHHCCCEEEECHHHHHHHTTSTTCST-TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhccccc-hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhee
Confidence 99999999999999999999999887654433 4578999999999999999999999999 899999999999987766
Q ss_pred cCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc----CCeeeeCce
Q 009867 322 SNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL----FGWFHTGDI 394 (523)
Q Consensus 322 ~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~~~~~TGD~ 394 (523)
....... ......++|+| ++++++++|++|++++.|+.|||+++||+++.||+++++.+++.|. ++||+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl 384 (512)
T 3fce_A 305 GIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDA 384 (512)
T ss_dssp EEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred eEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCce
Confidence 5432111 11244678998 7899999999999999999999999999999999999999999983 459999999
Q ss_pred eeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHH
Q 009867 395 GYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----EEVL 470 (523)
Q Consensus 395 ~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~ 470 (523)
|++ ++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++...++.+++++++.++...+. ++++
T Consensus 385 g~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~ 463 (512)
T 3fce_A 385 GYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463 (512)
T ss_dssp EEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHH
T ss_pred EEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHH
Confidence 999 79999999999999999999999999999999999999999999988887888888998876654443 5789
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++++++|+.|++|..++++++||+|++||++|++|++.+.++-.
T Consensus 464 ~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp HHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred HHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999887644
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=610.89 Aligned_cols=495 Identities=26% Similarity=0.361 Sum_probs=406.3
Q ss_pred CHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEee
Q 009867 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAP 84 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 84 (523)
++.++|.++++ +|+++|+++.+ .++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDT-GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhhc-cCCceEEEeCC-CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence 38889999999 99999999876 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccc-cceeeeecCCccc--ccccccccc-cccccccCCCCC
Q 009867 85 LNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNIS-HATATLLDADSEL--TLSLAHSES-DTNAISKLTNDP 160 (523)
Q Consensus 85 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 160 (523)
+++.++.+++.+++++++++++|++......+.......... ............. ...+.+... ...........+
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC 182 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCT
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCC
Confidence 999999999999999999999999987665554443221110 1111111110000 000000000 111112234567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHH-HHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNL-AASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 239 (523)
+++++++|||||||.||+|.++|+++ ..........+++.++|+++..+|++|..++...++.++..|+++++.+. .+
T Consensus 183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~ 261 (529)
T 2v7b_A 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE-RP 261 (529)
T ss_dssp TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS-CC
T ss_pred CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC-CC
Confidence 89999999999999999999999999 56555555566788999999999999999988778889999999998742 67
Q ss_pred ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 240 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
++..+++.++++++|+++++|+++..+++........ ..++|.+++||+++++++.+.+.+.+|+++++.||+||++.+
T Consensus 262 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 340 (529)
T 2v7b_A 262 TADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI 340 (529)
T ss_dssp CHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred CHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence 8999999999999999999999999998764332211 248999999999999999999999999999999999999766
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
+...... ....+++|+| ++++++++|++|++++.|+.|||+++|++++.||+++++.+...|.++||+|||+++++
T Consensus 341 ~~~~~~~---~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 341 FLSNRAG---AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp EEECCTT---CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred eeccccC---CCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 6554321 2456789999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHh
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNID---EEEVLRFCKK 475 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 475 (523)
++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.+.++++..++.... .+++++++++
T Consensus 418 ~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~ 496 (529)
T 2v7b_A 418 PNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKD 496 (529)
T ss_dssp TTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHT
T ss_pred CCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 555567788888887654222 3679999999
Q ss_pred cCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 476 NVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 476 ~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+|+.|++|..++++++||+|++||++|++|++
T Consensus 497 ~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 497 RLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred hcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999999999999999999999999999975
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-77 Score=607.98 Aligned_cols=492 Identities=21% Similarity=0.326 Sum_probs=421.0
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+|+.++|.++|+++|+++|+++.+ +++||+||+++++++|++|++. |.++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 79 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQG-QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPY 79 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCC-ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEE
Confidence 689999999999999999999877 6999999999999999999985 88899999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|+++.++.+++.+++++++++++|++...... ............ .... .............+++
T Consensus 80 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~ 144 (511)
T 3e7w_A 80 IPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQQIQTVSAE--------ELLE-NEGGSVSQDQWVKEHE 144 (511)
T ss_dssp EEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCCSSCEEEHH--------HHHT-SCSCCCCGGGSCCTTS
T ss_pred EecCCCChHHHHHHHHHhCCCCEEEecccccch------hcccccceecHh--------hhhc-cccCCccccccCCCCC
Confidence 999999999999999999999999986543210 000000000000 0000 0001111222346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~ 241 (523)
+++++|||||||.||+|.++|+++.+.+.+....+++.++++++..+|++|..++.. ++.++..|+++++.+... .++
T Consensus 145 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~ 223 (511)
T 3e7w_A 145 TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKP 223 (511)
T ss_dssp EEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHSH
T ss_pred eEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChhhhcCH
Confidence 999999999999999999999999999999888999999999999999999988765 889999999999876311 478
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+++.++++++|++.++|+++..++....... ..+++++.++++|+++++++.+.+.+.| ++++++.||+||++..+
T Consensus 224 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 302 (511)
T 3e7w_A 224 KVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAV 302 (511)
T ss_dssp HHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST-TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCS
T ss_pred HHHHHHHHHcCCcEEEecHHHHHHHHhcccccc-ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeee
Confidence 899999999999999999999999987654433 4578999999999999999999999999 89999999999998776
Q ss_pred ccCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc--CC--eeeeCc
Q 009867 321 SSNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL--FG--WFHTGD 393 (523)
Q Consensus 321 ~~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~TGD 393 (523)
+....... ......++|+| ++++++++|++|++++.|+.|||+|+|++++.||+++++.+++.|. +| ||+|||
T Consensus 303 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGD 382 (511)
T 3e7w_A 303 TSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGD 382 (511)
T ss_dssp EEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEE
T ss_pred eEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCC
Confidence 65432111 12344568999 7999999999999999999999999999999999999999999983 44 799999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH----HHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----EEV 469 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l 469 (523)
+|++ +||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++...+. +++
T Consensus 383 lg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l 461 (511)
T 3e7w_A 383 AGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAI 461 (511)
T ss_dssp EEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHH
T ss_pred eEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHH
Confidence 9999 59999999999999999999999999999999999999999999988888888999999887654443 678
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+++++++|+.|++|..++++++||+|++||++|++|++.+.+.-.
T Consensus 462 ~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 462 KKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp HHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred HHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 999999999999999999999999999999999999999887543
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-77 Score=621.34 Aligned_cols=508 Identities=22% Similarity=0.372 Sum_probs=418.1
Q ss_pred CHHHHHHHHHhhcCCceeEEEC-----CcccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 5 TLIGLLNQVIDQFSSKRALSVS-----GKFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 5 ti~~~l~~~a~~~p~~~a~~~~-----~~~~~Ty~el~~~~~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
++.++|+++++++|+++|+++. +.+++||+||+++++++|+.|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5778999999999999999973 2268999999999999999999 899999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchh---------HHHHHHhhcc-cccceeeeecCCc-cc------cc
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNA---------AAQAAASKLN-ISHATATLLDADS-EL------TL 141 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~-~~------~~ 141 (523)
|++++|+++.++.+++.+++++++++++|+++.... .+.......+ +...++ +..... .. ..
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~-~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV-YRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE-ECSSCCSSCCCCSSSEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE-EecCCCCccccCCCccc
Confidence 999999999999999999999999999999876532 1222221111 111111 111000 00 00
Q ss_pred ccccccc-cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHH-HHHHHhccCCCceEEEEcChhhHHHHHH
Q 009867 142 SLAHSES-DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDSTVIVLPLFHVHGMLA 219 (523)
Q Consensus 142 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 219 (523)
.+.+... ...........++++++++|||||||.||+|+++|.++..... .....+++.++|++++..|++|..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~ 321 (663)
T 1ry2_A 242 DWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 321 (663)
T ss_dssp EHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHH
T ss_pred cHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHH
Confidence 0111000 0111122234578999999999999999999999999876654 4556778999999999999999999877
Q ss_pred HHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHHH
Q 009867 220 GLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVIL 296 (523)
Q Consensus 220 ~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~~ 296 (523)
.++.++..|+++++.+.. ..++..+++.++++++|+++++|++++.|++.... ....+++++|.++++|+++++++.
T Consensus 322 ~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 401 (663)
T 1ry2_A 322 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVW 401 (663)
T ss_dssp TTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHH
Confidence 788999999999887642 25789999999999999999999999999876542 122457899999999999999999
Q ss_pred HHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECC-CCCccCC-CceeEEEEeC--CC
Q 009867 297 SRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDE-IGVPQEG-GAKGEVCIRG--PN 368 (523)
Q Consensus 297 ~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~-~~~~~~~-g~~Gel~v~~--~~ 368 (523)
+++.+.+| +++++.||+||++..++............+++|+| +|++++++|+ +|++++. |+.|||+++| |+
T Consensus 402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~ 481 (663)
T 1ry2_A 402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPS 481 (663)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTT
T ss_pred HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCc
Confidence 99999888 89999999999987766553212234566889999 7999999997 9999998 9999999999 58
Q ss_pred cccccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecC
Q 009867 369 VTKGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPD 445 (523)
Q Consensus 369 ~~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~ 445 (523)
++.|||++++.+.+.+ .+|||+|||+|++++||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 482 ~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~ 561 (663)
T 1ry2_A 482 FARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFND 561 (663)
T ss_dssp SCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCC
T ss_pred hhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEec
Confidence 9999999999888776 2789999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 446 DKYGEEINCAIIPREGSN---I-D------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 446 ~~~~~~~~~~v~~~~~~~---~-~------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
+..++.++++|++.++.. . + .++|+++++++|++|++|..|+++++||+|++||++|+.|++++.+++
T Consensus 562 ~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 639 (663)
T 1ry2_A 562 DLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES 639 (663)
T ss_dssp CTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred CCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCC
Confidence 888888999999877643 2 1 478999999999999999999999999999999999999999887763
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-77 Score=617.87 Aligned_cols=502 Identities=25% Similarity=0.398 Sum_probs=425.6
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
+++|+.++|.++++ |+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDGE-RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CcCCHHHHHHHhhC--CCCeEEecCC-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 46799999999987 9999999887 69999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccch-----hHHHHHHhhcccccceeeeecCCcccccccccc-ccccccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN-----AAAQAAASKLNISHATATLLDADSELTLSLAHS-ESDTNAISK 155 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (523)
++|++|.++.+++.++++++++++++++.... ................. ......... .... .........
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~ 178 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQ-LLNDSGEHN--LQDAINHPAEDFTA 178 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEE-EETCCSTTB--HHHHHHSCCSSCCC
T ss_pred EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceee-ecccccccc--hhhhhcccccccCC
Confidence 99999999999999999999999999987654 22222222211111111 111110000 0000 011111122
Q ss_pred CCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHH-HHHHhhhcCcEEEeC
Q 009867 156 LTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLA-GLLSSFAAGAAVTLP 234 (523)
Q Consensus 156 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~g~~~~~~ 234 (523)
....++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+++.. .++.++..|+++++.
T Consensus 179 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3446789999999999999999999999999999999989999999999999999999888765 588999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCC-CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP-EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAM 313 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~ 313 (523)
+ ..++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++.+++.+.+++++++.||+
T Consensus 259 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~ 336 (617)
T 3rg2_A 259 A--DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM 336 (617)
T ss_dssp S--SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEE
T ss_pred C--CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEecc
Confidence 7 5688999999999999999999999999987654332 235789999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeee
Q 009867 314 TEATHLMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFH 390 (523)
Q Consensus 314 tE~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~ 390 (523)
||++..++.... .......++|+| ++.+++++|+++++++.|+.|||+++|++++.||+++++.+++.| .++||+
T Consensus 337 tE~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yr 414 (617)
T 3rg2_A 337 AEGLVNYTRLDD--SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYC 414 (617)
T ss_dssp TTEEEEECCTTS--CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEE
T ss_pred CcceeecccCCC--cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCcee
Confidence 999865443321 111122467888 467999999999999999999999999999999999999999999 689999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..+ ..+.++++
T Consensus 415 TGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~ 492 (617)
T 3rg2_A 415 SGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVR 492 (617)
T ss_dssp EEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHH
T ss_pred cCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887888888888765 46788999
Q ss_pred HHHHh-cCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 471 RFCKK-NVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 471 ~~~~~-~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
+++++ .|+.|++|..++++++||+|++||++|++|++.+.+....
T Consensus 493 ~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp HHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccccc
Confidence 99998 6999999999999999999999999999999998876554
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-77 Score=612.96 Aligned_cols=482 Identities=21% Similarity=0.336 Sum_probs=407.6
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCC-ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++......... ........ ..... .. . ............+++
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~-~~~~~---~~--~---~~~~~~~~~~~~~~d 183 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVE-IFEED---TI--K---IREGTNLHVPSKSTD 183 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEE-ECCCS---TT--T---TSCCSCCCCCCCTTS
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCcee-eecch---hh--c---cccCccCCCCCCCCC
Confidence 999999999999999999999999998765432211 11100000 01100 00 0 000111112345789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCC-CCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGR-FSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~ 241 (523)
+++++|||||||.||+|.++|+++.+........+++.++|+++..+|++|..++.. ++.++..|+++++.+... .++
T Consensus 184 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~ 262 (563)
T 1amu_A 184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDF 262 (563)
T ss_dssp EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCH
T ss_pred eEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHhhcCH
Confidence 999999999999999999999999988888888889999999999999999888764 788999999999876321 578
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
..+++.++++++|++.++|+++..+... .++++|.+++||+++++++.+.+.+ .+++++.||+||++.+++
T Consensus 263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~ 333 (563)
T 1amu_A 263 VKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICAT 333 (563)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHTTSCTT-------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSE
T ss_pred HHHHHHHHHcCCcEEEeCHHHHHHHHhc-------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhhe
Confidence 8999999999999999999998776432 2578999999999999999999876 478999999999987766
Q ss_pred cCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccC-------CeeeeCc
Q 009867 322 SNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-------GWFHTGD 393 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~~~~TGD 393 (523)
.............++|+| ++++++++|+++++++.|+.|||+++|++++.||+++++.+++.|.+ +||+|||
T Consensus 334 ~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD 413 (563)
T 1amu_A 334 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD 413 (563)
T ss_dssp EEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred eeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC
Confidence 543322223355689999 79999999999999999999999999999999999999999998843 4999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++... ..+.+++++++
T Consensus 414 lg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l 491 (563)
T 1amu_A 414 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFS 491 (563)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHH
T ss_pred EEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888888888753 45788999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++|+.|++|..++++++||+|++||++|++|++...
T Consensus 492 ~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 492 SEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp HHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred HhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999999999999999999999999999987543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-77 Score=617.96 Aligned_cols=479 Identities=16% Similarity=0.234 Sum_probs=400.3
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~ 104 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDRF-GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY 104 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCC-CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 4689999999999999999999987 599999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++........ ... ... .................+++
T Consensus 105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~--~~~-----------~~~~~~~~~~~~~~~~~~~d 165 (620)
T 4dg8_A 105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLP--CVP-----------VRHLPAAPASVARPCFAADQ 165 (620)
T ss_dssp EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSC--EEE-----------GGGCCCCCCCSSCCCCCTTS
T ss_pred EeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCc--eee-----------eccCCcCCccccCCCCCCCC
Confidence 99999999999999999999999996654321100 000 000 00000111111122345789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++.+.+.. ...+++.++++++...|++|..++.. ++.++..|+++++.+...+++.
T Consensus 166 ~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~ 243 (620)
T 4dg8_A 166 IAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGPLDPG 243 (620)
T ss_dssp EEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSSCCHH
T ss_pred eEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccccCCHH
Confidence 999999999999999999999999876655 45678899999999999999988766 8899999999999766678999
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+.+... ..++++|.+++||++++++..+++.+.+ ++++++.||+||++.+++
T Consensus 244 ~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 319 (620)
T 4dg8_A 244 VLRQLIGERGADSAWLTASLFNTLVDLDP----DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTC 319 (620)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHHHHHCG----GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred HHHHHHHHhCCcEEEccHHHHHHHHhcCh----hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheE
Confidence 99999999999999999999999987532 2468999999999999999888887776 889999999999997766
Q ss_pred cCCCCC-CCCCCCCCcccc-CCcEEEEECCCCCc-cCCCceeEEEEeCCCcccccCCChhhhhhhccC--------Ceee
Q 009867 322 SNPLPE-DGPHKPGSVGRP-VGQEIAILDEIGVP-QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF--------GWFH 390 (523)
Q Consensus 322 ~~~~~~-~~~~~~~~~g~~-~~~~~~i~d~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------~~~~ 390 (523)
...... .......++|+| ++++++++|+++.+ ++.|+.|||+++|++++.||+++++.+++.|.+ +||+
T Consensus 320 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yr 399 (620)
T 4dg8_A 320 CHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYR 399 (620)
T ss_dssp EEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEE
T ss_pred EEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEe
Confidence 443222 123345689999 79999999988887 789999999999999999999999999999954 7999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVL 470 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 470 (523)
|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|++.++...+. ++++++... +.++
T Consensus 400 TGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~------~~~~ 472 (620)
T 4dg8_A 400 TGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKA------DASP 472 (620)
T ss_dssp EEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECT------TCCC
T ss_pred CCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEecCh------HHHH
Confidence 999999999999999999999999999999999999999999999999999887764333 444444322 2234
Q ss_pred HHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 471 RFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 471 ~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++++++|+.|++|..++++++||+|++||++|++|++++.+...
T Consensus 473 ~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 473 QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC-
T ss_pred HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccc
Confidence 56778899999999999999999999999999999988766544
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-78 Score=618.79 Aligned_cols=482 Identities=21% Similarity=0.336 Sum_probs=321.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEA-DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCC-CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 4689999999999999999999887 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++......+ ............ ..............+++
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~d 215 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------TGTTTLYVEDEA--------ASDAPAGNLATGVGPED 215 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------CSSEEEECCC---------------CCCCCCCCCTTS
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------cCCcceeeeccc--------cccccccccCCCCCCCC
Confidence 9999999999999999999999999987643211 000000000000 00011111223456899
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++.+.... ...+++.++++++..+|++|..+.. .++.++..|+++++.+...+++.
T Consensus 216 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~ 293 (570)
T 4gr5_A 216 VACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCVLQSGQNPDPL 293 (570)
T ss_dssp EEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEEECSSSSCCHH
T ss_pred eEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEEEcCCccCCHH
Confidence 999999999999999999999999766544 3455788999999999998865554 48889999999999876567899
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceeccccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 321 (523)
.+++.++++++|++.++|+++..+++.... .++++|.+++||++++++..+++.+.+ ++++++.||+||++++.+
T Consensus 294 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 294 EIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhchh----hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence 999999999999999999999999876432 368999999999999999999999887 889999999999987766
Q ss_pred cCCCCC-CCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-C--------Ceee
Q 009867 322 SNPLPE-DGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-F--------GWFH 390 (523)
Q Consensus 322 ~~~~~~-~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~--------~~~~ 390 (523)
...... +......++|+| ++++++++|+++++++.|+.|||+|+|++++.||+++++.+++.|. + |||+
T Consensus 370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~ 449 (570)
T 4gr5_A 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR 449 (570)
T ss_dssp EEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred eeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence 543221 122344568999 7999999999999999999999999999999999999999999883 2 6999
Q ss_pred eCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC-CCCCHHHH
Q 009867 391 TGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG-SNIDEEEV 469 (523)
Q Consensus 391 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l 469 (523)
|||+|++|+||.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++ ...+.++|
T Consensus 450 TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l 529 (570)
T 4gr5_A 450 TGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAEL 529 (570)
T ss_dssp EEEEEEECTTSCEEEEEC--------------------------------------------------------------
T ss_pred CCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999888778888888887654 34567889
Q ss_pred HHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHH
Q 009867 470 LRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEH 508 (523)
Q Consensus 470 ~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~ 508 (523)
+++++++|+.|++|..++++++||+|++||++|++|++.
T Consensus 530 ~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 530 RRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------
T ss_pred HHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 999999999999999999999999999999999999763
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-77 Score=607.41 Aligned_cols=496 Identities=20% Similarity=0.272 Sum_probs=406.4
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
|+..|+.++|.++|+++|+++|+.+.+ +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 1 m~~~~l~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 79 (521)
T 3l8c_A 1 MSLKDMIDSIEQFAQTQADFPVYDCLG-ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH 79 (521)
T ss_dssp -CCCCHHHHHHHHHHHSTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHCCCCcceecCC-CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 677899999999999999999999887 6999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCC
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDP 160 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (523)
+++|+++.++.+++.+++++++++++|++++..... .......... .. ................+
T Consensus 80 v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~ 144 (521)
T 3l8c_A 80 AYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------EGISLVSLSE-----IE-SAKLAEMPYERTHSVKG 144 (521)
T ss_dssp CEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------TTSEEEEHHH-----HH-HHHHHTCCCCCSSCCCT
T ss_pred EEEecCccccHHHHHHHHHhCCCCEEEecCcccccc---------ccCcccchhh-----hh-hcccccCCcccCCCCCC
Confidence 999999999999999999999999999987643211 0000000000 00 00000111112234567
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH--hccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--YKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG- 237 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~- 237 (523)
+++++++|||||||.||+|.++|+++.+...+.... +++.++++++...|++|..++.. ++.++..|+++++.+..
T Consensus 145 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~~ 223 (521)
T 3l8c_A 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKEL 223 (521)
T ss_dssp TSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGGG
T ss_pred CCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHHH
Confidence 899999999999999999999999999887776555 67788999999999988877655 88889999999887642
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccc
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEA 316 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~ 316 (523)
..++..+++.+.++++|++.++|+++..+........ ..+++++.++++|++++++..+.+.+.+ ++++++.||+||+
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~ 302 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ-AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA 302 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCST-TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccc-ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence 2378899999999999999999999999887654332 4578999999999999999999999998 8999999999999
Q ss_pred ccccccCCCCCC--CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc----cCCee
Q 009867 317 THLMSSNPLPED--GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF----LFGWF 389 (523)
Q Consensus 317 ~~~~~~~~~~~~--~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----~~~~~ 389 (523)
++.++....... ......++|+| ++++++++|++|.+++.|+.|||+|+||+++.||+++++.+++.| .++||
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~ 382 (521)
T 3l8c_A 303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382 (521)
T ss_dssp SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred hhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence 877665432111 11244578999 799999999999999999999999999999999999999999988 24699
Q ss_pred eeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCC-CCceeEEEEEeCCCCCCC---
Q 009867 390 HTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDK-YGEEINCAIIPREGSNID--- 465 (523)
Q Consensus 390 ~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~--- 465 (523)
+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++++..++...+
T Consensus 383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~ 462 (521)
T 3l8c_A 383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462 (521)
T ss_dssp EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999886554 356788889888764321
Q ss_pred ----HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 466 ----EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 466 ----~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
.++++++++++|+.|++|..++++++||+|++||++|++|++++.++..
T Consensus 463 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp HHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred chhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 4679999999999999999999999999999999999999999877644
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-77 Score=606.08 Aligned_cols=488 Identities=25% Similarity=0.370 Sum_probs=391.6
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEEe
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAA 83 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 83 (523)
+|+.++|.++|+++|+++|+++.+ +++||+||.++++++|++|+++ +||+|+++++|++++++++|||+++|++++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 76 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQ-ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIA 76 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSS-CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCC-cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 578899999999999999999877 6999999999999999999986 899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeee-ecC----Cccccccc-ccc---cccccccc
Q 009867 84 PLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATL-LDA----DSELTLSL-AHS---ESDTNAIS 154 (523)
Q Consensus 84 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~-~~~---~~~~~~~~ 154 (523)
|+++.++.+++.+++++++++++|++...............+....... ... ........ ... ........
T Consensus 77 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (501)
T 3ipl_A 77 MINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNIL 156 (501)
T ss_dssp ECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHHHHT
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCccccc
Confidence 9999999999999999999999999876543221000000000000000 000 00000000 000 01111112
Q ss_pred cCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeC
Q 009867 155 KLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP 234 (523)
Q Consensus 155 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 234 (523)
.....++++++++|||||||.||+|.++|+++.+........+++.+++++++.+|++|.+|+.. ++.++..|+++++.
T Consensus 157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence 23456899999999999999999999999999999999889999999999999999999999877 88999999999998
Q ss_pred CCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccc
Q 009867 235 AAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMT 314 (523)
Q Consensus 235 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~t 314 (523)
+ .+++..+++.++++++|+++++|+++..|++...... .++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus 236 ~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~T 308 (501)
T 3ipl_A 236 D--KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMT 308 (501)
T ss_dssp S--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEG
T ss_pred C--CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----CcccEEEEeCCCCCHHHHHHHHH-hCCCEecccccc
Confidence 7 6799999999999999999999999999988765433 38999999999999999999987 699999999999
Q ss_pred ccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCc
Q 009867 315 EATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGD 393 (523)
Q Consensus 315 E~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD 393 (523)
|++..+..... .......+++|+| ++++++++|++ .++.|||+++|++++.||+++++.+.. +.+|||+|||
T Consensus 309 E~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGD 381 (501)
T 3ipl_A 309 ETCSQFLTATP-EMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGD 381 (501)
T ss_dssp GGTEEEEEECH-HHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEE
T ss_pred ccccceeecCc-cccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCC
Confidence 99876554331 1112355679999 79999999964 567899999999999999999998887 8899999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++++.. ...+.+++++++
T Consensus 382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l 459 (501)
T 3ipl_A 382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYL 459 (501)
T ss_dssp EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHH
T ss_pred EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888888888864 346789999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
+++|+.|++|..++++++||+|++||++|++|++...+.
T Consensus 460 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 460 SKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHSCGGGSCSEEEECSSCC-------------------
T ss_pred HhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999999999999999999999999999999999887654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-77 Score=648.27 Aligned_cols=510 Identities=29% Similarity=0.453 Sum_probs=341.1
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECC-cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSG-KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARAT 81 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~-~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 81 (523)
.+|+.++|.++++++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 4799999999999999999999863 378999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCC----ccccccccccc----cccccc
Q 009867 82 AAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDAD----SELTLSLAHSE----SDTNAI 153 (523)
Q Consensus 82 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~ 153 (523)
++|++|.++.+++.+++++++++++|++......+.......... .+.+.... ......+.+.. ......
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCE--EEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGS
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCce--EEEeCCcccccCCcccccHHHHhhccccccccC
Confidence 999999999999999999999999999988776655544332221 11111110 00011111110 001122
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH----HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCc
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS----VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGA 229 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~ 229 (523)
+.....++++++++|||||||.||+|.++|+++...+..... .+.+.+++++++.+|++|.+++...++.++..|+
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 297 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTC
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCc
Confidence 333457899999999999999999999999999988766543 4467889999999999999999887899999999
Q ss_pred EEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCcee
Q 009867 230 AVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVL 308 (523)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~ 308 (523)
++++.+ .+++..+++.++++++|++.++|+++..+++...... .+++++|.+++||+++++++.+++.+.| +++++
T Consensus 298 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 298 AILIMP--KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK-YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp EEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGT-SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred EEEEeC--CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccC-CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 999987 6789999999999999999999999999988765443 4578999999999999999999999998 89999
Q ss_pred ccccccccccccccCCC--CCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc
Q 009867 309 EAYAMTEATHLMSSNPL--PEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384 (523)
Q Consensus 309 ~~yG~tE~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 384 (523)
+.||+||++.+++.+.. ........+++|+| ++.+++++| +++++++.|+.|||+|+|++++.||+++|+.+++.|
T Consensus 375 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f 454 (979)
T 3tsy_A 375 QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETI 454 (979)
T ss_dssp ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhc
Confidence 99999999977654421 12234456789999 799999999 779999999999999999999999999999999999
Q ss_pred -cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC
Q 009867 385 -LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463 (523)
Q Consensus 385 -~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 463 (523)
.+|||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++..
T Consensus 455 ~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~ 534 (979)
T 3tsy_A 455 DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE 534 (979)
T ss_dssp CTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------------------------
T ss_pred cCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999998888888899999887777
Q ss_pred CCHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhhhc
Q 009867 464 IDEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAK 517 (523)
Q Consensus 464 ~~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~~~ 517 (523)
.+.++++++++++|+.|++|..++++++||+|++||++|++|++++.+.+++.+
T Consensus 535 ~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 535 LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp ------------------------------------------------------
T ss_pred CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCcc
Confidence 778899999999999999999999999999999999999999999988766443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-77 Score=601.25 Aligned_cols=473 Identities=31% Similarity=0.466 Sum_probs=390.5
Q ss_pred CCHHHHHHHHHhhcCC-ceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSS-KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~-~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.|+.++|.++++++|+ ++|+++.+ +++||+||.++++++|.+|. .|++|+++++|++++++++|||+++|+++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~-~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGE-RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETT-EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred chhHHHHHHHHHhCCCCCeEEEECC-eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 4677888889999988 99999887 69999999999999998874 38899999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++.+.... .. ........... ......+.....+++
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~--~~~~~~~~~~~------------~~~~~~~~~~~~~~d 156 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PA--LGALERVDVDV------------RARGAVPEDGADDGD 156 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GG--GTTSEEEECCT------------TCCCCCCCCCCCTTS
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hh--hcccccccccc------------ccccCCCCCCCCCCC
Confidence 999999999999999999999999998652110 00 00000000000 001111223456789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|.+|+...++.++..|+++++.+ .+++.
T Consensus 157 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~ 234 (505)
T 3nyq_A 157 PALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG--RFSTE 234 (505)
T ss_dssp EEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS--SCCHH
T ss_pred eEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC--CCChH
Confidence 9999999999999999999999999999999999999999999999999999999888999999999999986 67889
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCC--CCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccccc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKP--EPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLM 320 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 320 (523)
.+++.+ ++++|+++++|+++..+++...... ...++++|.+++||+.+++++.+++.+.+++++++.||+||++..+
T Consensus 235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 313 (505)
T 3nyq_A 235 GAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT 313 (505)
T ss_dssp HHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEE
T ss_pred HHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhccccc
Confidence 999999 8899999999999999987543221 1235788999999999999999999999999999999999998766
Q ss_pred ccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCC---CceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCcee
Q 009867 321 SSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEG---GAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIG 395 (523)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~ 395 (523)
+.... .....+++|+| ++++++++|++|++++. |+.|||+++|++++.||+++++.+++.| .+|||+|||+|
T Consensus 314 ~~~~~---~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~ 390 (505)
T 3nyq_A 314 SVRAD---GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA 390 (505)
T ss_dssp ECCTT---SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEE
T ss_pred ccCCC---CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeE
Confidence 55432 23456789999 79999999999998876 8999999999999999999999999999 58999999999
Q ss_pred eEcCCCcEEEeccc-ccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHH
Q 009867 396 YFDSDGYLHLVGRI-KELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-GSNIDEEEVLRFC 473 (523)
Q Consensus 396 ~~~~~g~~~~~GR~-~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~ 473 (523)
+++++|.+++.||+ |++||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+ +...+.+++++++
T Consensus 391 ~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l 470 (505)
T 3nyq_A 391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV 470 (505)
T ss_dssp EECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHH
T ss_pred EECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHH
Confidence 99999999999998 589999999999999999999999999999999999988899999999875 4456788999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+++|+.|++|..++++++||+|++||++|++|++
T Consensus 471 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 471 AARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp HHHTCGGGSCSEEEECSCCCC-------------
T ss_pred HhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999999999999999875
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-74 Score=593.44 Aligned_cols=499 Identities=20% Similarity=0.317 Sum_probs=409.0
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECC---cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSG---KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~---~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
+.+|+.++|.++|+++|+++|+++.+ ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 56899999999999999999998642 379999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCC---CHHHHHHHHhhCCceEEEecccchhHHHHHH-hhcc-cccceeeeecCCccccccccccccccccc
Q 009867 79 RATAAPLNAAY---TPDEFEFYLSDSESKLLLTPAEGNAAAQAAA-SKLN-ISHATATLLDADSELTLSLAHSESDTNAI 153 (523)
Q Consensus 79 G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (523)
|++++|++|.+ +.+++.++++.+++++++++.+....+.... .... ..... ....+ .. ........
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~-~~~~~~~~ 159 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP--AIALE------SI-ELNRSSSW 159 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE--EEEGG------GC-CGGGGGGC
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc--eeech------hc-cccccccC
Confidence 99999999988 4578999999999999999876543332111 1100 00000 00000 00 00111112
Q ss_pred ccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 154 SKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 154 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
......++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+|+...++.++..|+++++
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 22345688999999999999999999999999999999999999999999999999999999998878999999999999
Q ss_pred CCCCCC--ChhHHHHHHHhcCccEEeechHHHHHHHhcccC--CCCCCCCCcceEEeccCCCCHHHHHHHHHHhC-----
Q 009867 234 PAAGRF--SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA--KPEPVYPKLRFIRSCSASLAPVILSRLEEAFG----- 304 (523)
Q Consensus 234 ~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~----- 304 (523)
.+...+ ++..+++.++++++|++.++|+++..+.+.... ....+++++|.+++||+++++++.+++.+.|+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 319 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 773222 788999999999999999999999998875322 22345789999999999999999999999883
Q ss_pred -CceeccccccccccccccCCCCC------------------------CCCCCCCCccccCCcEEEEECCC-CCccCCCc
Q 009867 305 -APVLEAYAMTEATHLMSSNPLPE------------------------DGPHKPGSVGRPVGQEIAILDEI-GVPQEGGA 358 (523)
Q Consensus 305 -~~v~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~~~g~~~~~~~~i~d~~-~~~~~~g~ 358 (523)
+++++.||+||++.+++...... .......++|+|... ++++|++ +.+++.|+
T Consensus 320 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-v~i~d~~~~~~~~~g~ 398 (590)
T 3kxw_A 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE-VKIIDPDTLIPCDFDQ 398 (590)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE-EEEECTTTCCBCCTTB
T ss_pred ccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC-eEEEcCCCCcCCCCCC
Confidence 46999999999998776543211 011123467877433 8899955 89999999
Q ss_pred eeEEEEeCCCcccccCCChhhhhhhccC-------C--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHH
Q 009867 359 KGEVCIRGPNVTKGYKNNPEANKSAFLF-------G--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVL 429 (523)
Q Consensus 359 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l 429 (523)
.|||+|+||+++.||+++++.+++.|.+ | ||+|||+|+++ +|.+++.||.||+||++|++|+|.+||++|
T Consensus 399 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l 477 (590)
T 3kxw_A 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477 (590)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence 9999999999999999999999999853 5 99999999999 999999999999999999999999999999
Q ss_pred -hcCCCce--eeEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCcC-CCCCc-EEEEe--CCcCCCCCccc
Q 009867 430 -LSHPDIA--QAVAFGVPDDKYGEEINCAIIPREGS--NIDEEEVLRFCKKNVAA-FKVPK-RVFIT--NELPKTASGKI 500 (523)
Q Consensus 430 -~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~i~~~--~~lp~t~~GK~ 500 (523)
..++.|. +++|++++++. ++.+.++++..++. ..+.++++++++++++. +++|. .++++ ++||+|++||+
T Consensus 478 ~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi 556 (590)
T 3kxw_A 478 MHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKI 556 (590)
T ss_dssp HHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHH
T ss_pred HhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHH
Confidence 7889998 79999988776 56777888877653 34567899999999885 78875 55555 79999999999
Q ss_pred cHHHHHHHHHHh
Q 009867 501 QRRIVSEHFLAQ 512 (523)
Q Consensus 501 ~r~~l~~~~~~~ 512 (523)
+|++|++++.+.
T Consensus 557 ~R~~L~~~~~~~ 568 (590)
T 3kxw_A 557 RRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999999864
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-74 Score=592.66 Aligned_cols=493 Identities=17% Similarity=0.240 Sum_probs=311.2
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK---------FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF 72 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~---------~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 72 (523)
+.+|+.++|.++|+++|+++|+++.++ +++||+||.++++++|+.|.+.|+ +||+|+++++|++++++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~ 96 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII 96 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence 568999999999999999999986431 689999999999999999999999 7999999999999999999
Q ss_pred HHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccc
Q 009867 73 LAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNA 152 (523)
Q Consensus 73 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (523)
|||+++|++++|+++.++.+++.+++++++++++|+++...... ............. ...... .......
T Consensus 97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~--~~~~~~~ 166 (562)
T 3ite_A 97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-------ELPPETKVLDTKN-QSFIEN--LSTQDTS 166 (562)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-------CCCTTCEEEETTC-HHHHHH--HHHSCCS
T ss_pred HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-------ccCccceeecccc-hhhhhh--ccccccc
Confidence 99999999999999999999999999999999999986643211 0000000000000 000000 0000111
Q ss_pred cccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHH--------hccCCCceEEEEcChhhHHHHHHHHHHh
Q 009867 153 ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV--------YKLTESDSTVIVLPLFHVHGMLAGLLSS 224 (523)
Q Consensus 153 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 224 (523)
.......++++++++|||||||.||+|.++|+++.+....+... +.+...+++++..|+.|..++.. ++.+
T Consensus 167 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (562)
T 3ite_A 167 DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLA 245 (562)
T ss_dssp CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHH
T ss_pred ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHH
Confidence 11223456889999999999999999999999998877665443 34778889999999888777654 7788
Q ss_pred hhcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhC
Q 009867 225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304 (523)
Q Consensus 225 l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~ 304 (523)
+..|+++++... ...+..+++.++++++|+++++|++++.+.... ..++++|.+++||+++++++.+.+.+.++
T Consensus 246 l~~g~~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~-----~~~~~lr~~~~gG~~l~~~~~~~~~~~~~ 319 (562)
T 3ite_A 246 WRFGLCAVTGER-LSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP-----EDAPHLVYLGVGGEKMTPRTQQIWSSSDR 319 (562)
T ss_dssp HHTTCEEEECCH-HHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG-----GGSTTCCEEEEESSCCCHHHHHHHTTCSS
T ss_pred HhcccEEEecch-hhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc-----cccCceEEEEEecCCCCHHHHHHHhhCCC
Confidence 999999988662 123567889999999999999999988774332 24689999999999999999999998889
Q ss_pred CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 305 ~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
+++++.||+||++..++...... .....++|+| ++.+++++| +.+.+++.|+.|||+|+|++++.||+++++.+..
T Consensus 320 ~~~~~~YG~TE~~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~ 397 (562)
T 3ite_A 320 VALVNVYGPTEVTIGCSAGRILP--DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGF 397 (562)
T ss_dssp CEEEEEECCGGGCSCSEEEECCT--TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSE
T ss_pred cEEEEeeccchheeeeeeeeecC--CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccc
Confidence 99999999999987766554322 2345678999 789999999 5688899999999999999999999999998887
Q ss_pred hccCC--eeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcC-CCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 383 AFLFG--WFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSH-PDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 383 ~~~~~--~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
.+.+| ||+|||+|++|++|.+++.||.||+||++|++|+|.+||++|.++ +.+.+++|++.+++..++..+++++..
T Consensus 398 ~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 477 (562)
T 3ite_A 398 CDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVAS 477 (562)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------
T ss_pred ccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEec
Confidence 77777 999999999999999999999999999999999999999999998 778888888888887777666666654
Q ss_pred CCCCCC-------------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCC-CCccccHHHHHHHHHHhhh
Q 009867 460 EGSNID-------------EEEVLRFCKKNVAAFKVPKRVFITNELPKT-ASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 460 ~~~~~~-------------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t-~~GK~~r~~l~~~~~~~~~ 514 (523)
.+.... .++|+++++++|+.|++|+.++++++||+| ++||++|++|++++.+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 478 SGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLSL 546 (562)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccCH
Confidence 443222 248999999999999999999999999998 8999999999999986543
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-72 Score=627.85 Aligned_cols=486 Identities=24% Similarity=0.352 Sum_probs=412.1
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
..++.++|.++++++|+++|+++.+ +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~ 541 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYSG-QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY 541 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESSS-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECC-eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 4689999999999999999999877 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.++++++++++++++........ ......... ..+.. . . . ......+.....+++
T Consensus 542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~-~~~~~-~-~--~----~~~~~~~~~~~~~~~ 608 (1304)
T 2vsq_A 542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTL-FIDDQ-T-R--F----EEQASDPATAIDPND 608 (1304)
T ss_dssp EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEE-ESSCG-G-G--G----GSCSSCCCCCCCTTS
T ss_pred EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEE-Eeccc-c-c--c----ccccCCCCCCCCCCC
Confidence 99999999999999999999999999876442211 011011111 11100 0 0 0 001111223456789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC-CCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG-RFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~-~~~~ 241 (523)
+++++|||||||.||||+++|+++.+. ......+++.++++++...|+.+..+.. .++.++..|+++++.+.. ..++
T Consensus 609 ~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~~~~~~~~~~ 686 (1304)
T 2vsq_A 609 PAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLIIADEHTLLDT 686 (1304)
T ss_dssp EEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCGGGTTCH
T ss_pred eEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEECChhhcCCH
Confidence 999999999999999999999999865 4445566788999999999988776654 488999999999997743 3588
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHh-CCceecccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTEATHLM 320 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~ 320 (523)
..+.+.+.++++|+++++|++++.+.+... ..++++|.+++|||.++++..+.+.+.+ +++++|.||+||++.++
T Consensus 687 ~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 687 ERLTDLILQENVNVMFATTALFNLLTDAGE----DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHHHHHHHCS----HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred HHHHHHHHHcCCcEEEccHHHHHHHHhhch----hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 999999999999999999999999976521 2357899999999999999999998888 47899999999999877
Q ss_pred ccCCCCCC-CCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------CCeeee
Q 009867 321 SSNPLPED-GPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHT 391 (523)
Q Consensus 321 ~~~~~~~~-~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~~~~T 391 (523)
+....... ......++|+| ++++++|+|+++++++.|+.|||+|+|+++++||+++|+.|++.|. ++||+|
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrT 842 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT 842 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEec
Confidence 65433221 22344679999 7899999999999999999999999999999999999999999983 249999
Q ss_pred CceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 009867 392 GDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLR 471 (523)
Q Consensus 392 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 471 (523)
||+|++++||.++++||+|++||++|++|.|.|||.+|.++|+|.+++|++.++...+..++++++... ..+.+++++
T Consensus 843 GDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~ 920 (1304)
T 2vsq_A 843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKA 920 (1304)
T ss_dssp EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHH
T ss_pred CCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888877888888888754 467899999
Q ss_pred HHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHH
Q 009867 472 FCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFL 510 (523)
Q Consensus 472 ~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~ 510 (523)
+++++||.|++|..++++++||+|++||++|++|.+...
T Consensus 921 ~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 921 HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp HHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred HHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 999999999999999999999999999999998865443
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-60 Score=476.55 Aligned_cols=396 Identities=22% Similarity=0.319 Sum_probs=316.0
Q ss_pred CCCCCHHHHHHHHHhhcCCceeEEECC------c--ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Q 009867 1 MEGVTLIGLLNQVIDQFSSKRALSVSG------K--FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMF 72 (523)
Q Consensus 1 ~~~~ti~~~l~~~a~~~p~~~a~~~~~------~--~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~ 72 (523)
|+.+|+.++|.++|+++|+++|+++.+ + +++||+||.++++++|++|+++|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 577899999999999999999998754 1 689999999999999999999995 9999999999999999999
Q ss_pred HHHHHhcCEEeeCCC---CCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhccccc-ceeeeecCCcccccccccccc
Q 009867 73 LAVIRARATAAPLNA---AYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISH-ATATLLDADSELTLSLAHSES 148 (523)
Q Consensus 73 la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (523)
|||+++|++++|+++ .++.+++.+++++++++++|++......+........... ......+. .. ..
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~ 170 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL--------LD-LD 170 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG--------SC-TT
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc--------cc-cc
Confidence 999999999999999 7889999999999999999999887665544322211100 00000000 00 01
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCC------CceEEEEcChhhHHHHHHHHH
Q 009867 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE------SDSTVIVLPLFHVHGMLAGLL 222 (523)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~~~~~~ 222 (523)
...........++++++++|||||||.||+|+++|+++.+.+......+.+.+ ++++++.+|++|.+|+...++
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 250 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGIC 250 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTH
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHH
Confidence 11112223456789999999999999999999999999999988888888877 999999999999999888899
Q ss_pred HhhhcCcEEEeCCCCC--CChhHHHHHHHhcCccEEeechHHHHHHHhccc---CCCCCCCCCcceEEeccCCCCHHHHH
Q 009867 223 SSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHV---AKPEPVYPKLRFIRSCSASLAPVILS 297 (523)
Q Consensus 223 ~~l~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~---~~~~~~~~~l~~i~~~g~~~~~~~~~ 297 (523)
.++..|+++++.+... .++..+++.++++++| +..+|+++..++.... .....+++++|.+++||+++++++.+
T Consensus 251 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~ 329 (480)
T 3t5a_A 251 APILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIK 329 (480)
T ss_dssp HHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHH
Confidence 9999999999976322 2789999999999999 8899999888876421 12234578999999999999999999
Q ss_pred HHHHHhC------CceeccccccccccccccCCCCCCC----------------------CCCCCCccccCCcEEEEECC
Q 009867 298 RLEEAFG------APVLEAYAMTEATHLMSSNPLPEDG----------------------PHKPGSVGRPVGQEIAILDE 349 (523)
Q Consensus 298 ~~~~~~~------~~v~~~yG~tE~~~~~~~~~~~~~~----------------------~~~~~~~g~~~~~~~~i~d~ 349 (523)
++.+.|+ +.+++.||+||++.+++........ .....++|+|...+++|+|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~ 409 (480)
T 3t5a_A 330 RFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDS 409 (480)
T ss_dssp HHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEET
T ss_pred HHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcC
Confidence 9999984 4699999999999877765432110 12334789994499999995
Q ss_pred C-CCccCCCceeEEEEeCCCcccccCCChhhhhhhc------------cCCeeeeCceeeEcCCCcEEEecc
Q 009867 350 I-GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF------------LFGWFHTGDIGYFDSDGYLHLVGR 408 (523)
Q Consensus 350 ~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~~~~~TGD~~~~~~~g~~~~~GR 408 (523)
+ |++++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|+++ ||.++|.||
T Consensus 410 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 410 DTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 5 7999999999999999999999999999999998 35699999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=410.95 Aligned_cols=317 Identities=20% Similarity=0.283 Sum_probs=264.8
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRF 239 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~ 239 (523)
.+++++|+|||||||.||+|+++|+++.+.+......++++++|++++.+|++|.+|+.. ++.++..|+++++... ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~-~~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEP-TA 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECC-CS
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCc-cc
Confidence 378899999999999999999999999999999999999999999999999999999876 7778888888887653 22
Q ss_pred ChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 240 SASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 240 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
..++.++++++|++.++|+++..+++..... ..++++|.+++||+++++++.+++.+ +++++++.||+||++..
T Consensus 114 ---~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~ 187 (358)
T 4gs5_A 114 ---NPLAGLDHADFDFVAMVPMQLQSILENSATS--GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSH 187 (358)
T ss_dssp ---CTTTTCSSCCCSEEEECHHHHHHHHHCTTTG--GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSE
T ss_pred ---cHHHHHHHhCCeEEEcChHHHHHhhcccccc--ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccce
Confidence 2356788999999999999999998875433 35789999999999999999999875 58999999999999887
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEc
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFD 398 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 398 (523)
++..... ....+.+|.+ +++.+.+.+ .||++++|+.. .+|||+|||++++|
T Consensus 188 ~~~~~~~---~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~~---------------~~g~~~TGDlg~~d 239 (358)
T 4gs5_A 188 VALKALN---GPEASELYVFLPGIQYGVDE----------RGCLHISGAVT---------------NGQTVQTNDLVEIH 239 (358)
T ss_dssp EEEEECS---STTCCSCEEECTTCEEEECT----------TSEEEEESGGG---------------TTCCEEEEEEEEEC
T ss_pred eeccccc---ccccceeeccCCCeEEEecC----------cCceEEecccc---------------cCcceecCCccccc
Confidence 7765432 2344567777 677666543 48999988532 35799999999999
Q ss_pred CCCcEEEecccccceecCCcccChHHHHHHHh---cCCCceeeEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 009867 399 SDGYLHLVGRIKELINRGGEKISPIEVDAVLL---SHPDIAQAVAF-GVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK 474 (523)
Q Consensus 399 ~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 474 (523)
++| ++++||.||+||++|++|+|.+||++|. ++|+|.+++|+ +.+++..++.++++++...+ ....++|+++++
T Consensus 240 ~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~ 317 (358)
T 4gs5_A 240 GNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIR 317 (358)
T ss_dssp SSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHH
T ss_pred cCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHH
Confidence 988 6778999999999999999999998774 57999988776 56777777888777775443 345678999999
Q ss_pred hcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 475 KNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 475 ~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++|+.|++|+.++++++||+|++||++|++|++++.+..+
T Consensus 318 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 318 SRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp HHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred hhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 9999999999999999999999999999999999877544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=398.85 Aligned_cols=325 Identities=16% Similarity=0.164 Sum_probs=270.8
Q ss_pred CCC-CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDP-SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..+ +++++++|||||||.||+|.++|+++......+. ..+++.++|+++..+|+.|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 8899999999999999999999999987766553 345889999999999988777777778889999999998
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCC-CCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE-PVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~-~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++....... ..++++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 162 ~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 239 (436)
T 3qov_A 162 AA--AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFG 239 (436)
T ss_dssp CC--SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCc
Confidence 76 55889999999999999999999999999887544332 2368999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeee
Q 009867 313 MTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFH 390 (523)
Q Consensus 313 ~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 390 (523)
+||+++.+...... .....+.| ++..++++| ++|++++.|+.|||+|+|. +...+.++||+
T Consensus 240 ~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~ 302 (436)
T 3qov_A 240 MTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMMPLIRYR 302 (436)
T ss_dssp EGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSSCCCSEE
T ss_pred chhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCceEEEEE
Confidence 99995442222111 11224555 588999999 8999999999999999983 33445678999
Q ss_pred eCceeeEcCCC------c---EEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 391 TGDIGYFDSDG------Y---LHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 391 TGD~~~~~~~g------~---~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
|||+++++++| . +++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.++|++. +
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~ 381 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-D 381 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-T
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-C
Confidence 99999999998 5 699999999999999999999999999999999999999988877788899999988 5
Q ss_pred CCCC----HHHHHHHHHhcCcCC-CCCcEEEEeC--CcCCCCCccccHH
Q 009867 462 SNID----EEEVLRFCKKNVAAF-KVPKRVFITN--ELPKTASGKIQRR 503 (523)
Q Consensus 462 ~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~--~lp~t~~GK~~r~ 503 (523)
...+ .++++++++++|+.+ ++|..+.+++ +||+|+ ||++|.
T Consensus 382 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 382 LSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 5444 578999999999998 8999999998 999999 999985
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=389.21 Aligned_cols=326 Identities=15% Similarity=0.158 Sum_probs=269.0
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcChh-hHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPLF-HVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~-~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++........ ..+++.++|+++..+|+. |..++. ..+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEEE
Confidence 4568899999999999999999999999877655433 367889999999999984 554444 47888999999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCC-CCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++........ .++++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 168 ~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 245 (443)
T 2y4o_A 168 MS--GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYG 245 (443)
T ss_dssp CC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccC
Confidence 76 458999999999999999999999999998765433211 247899999999999999999999999999999999
Q ss_pred cccccc--ccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCe
Q 009867 313 MTEATH--LMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW 388 (523)
Q Consensus 313 ~tE~~~--~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 388 (523)
+||+++ ++..+.. .....+.+ ++..++++| ++|++++.|+.|||+++|. +++.+.++|
T Consensus 246 ~TE~~g~~~~~~~~~------~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~p~~~ 307 (443)
T 2y4o_A 246 LSEVMGPGVACECVE------TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAMPVIR 307 (443)
T ss_dssp ETTTTEEEEEEECTT------TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSSCCSS
T ss_pred chhhcCCeEEeccCC------CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccChhhe
Confidence 999743 3332221 11123444 578999999 6799999999999999982 334456789
Q ss_pred eeeCceeeEcCC-CcE-----EEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCC--
Q 009867 389 FHTGDIGYFDSD-GYL-----HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE-- 460 (523)
Q Consensus 389 ~~TGD~~~~~~~-g~~-----~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-- 460 (523)
|+|||+++++++ |.+ ++.||.+|+||++|++|+|.+||++|.++|+|.++++++++++..++.+.++|+..+
T Consensus 308 y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~ 387 (443)
T 2y4o_A 308 YRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA 387 (443)
T ss_dssp EEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHH
T ss_pred eecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcc
Confidence 999999999999 986 899999999999999999999999999999999999888877666777888888865
Q ss_pred C---CCCCHHHHHHHHHhcCcCC-CCCcEEEEe--CCcCCCCCccccHHH
Q 009867 461 G---SNIDEEEVLRFCKKNVAAF-KVPKRVFIT--NELPKTASGKIQRRI 504 (523)
Q Consensus 461 ~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lp~t~~GK~~r~~ 504 (523)
+ ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|..
T Consensus 388 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 388 AASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 2 2234578999999999887 489888888 599999999999964
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=385.72 Aligned_cols=325 Identities=15% Similarity=0.153 Sum_probs=268.9
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHH---HHhccCCCceEEEEcCh-hhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK---SVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++......+. ..+++.++|+++..+|+ +|..++.. .+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEe
Confidence 3568899999999999999999999999877665433 35788999999999998 56655544 7888999999988
Q ss_pred CCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCC-CCCCcceEEeccCCCCHHHHHHHHHHhCCceecccc
Q 009867 234 PAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYA 312 (523)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG 312 (523)
.+ ..++..+++.++++++|+++++|+++..|++........ ..+++|.+++||+++++++.+.+.+.||+++++.||
T Consensus 166 ~~--~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG 243 (437)
T 2y27_A 166 FG--GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYG 243 (437)
T ss_dssp CC--SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEE
T ss_pred CC--CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCC
Confidence 76 458999999999999999999999999998765432211 247899999999999999999999999999999999
Q ss_pred ccccccc-cccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCee
Q 009867 313 MTEATHL-MSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389 (523)
Q Consensus 313 ~tE~~~~-~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (523)
+||+++. +.... .. .....+.+ ++..++++| ++|++++.|+.|||+++| .+.+.+.++||
T Consensus 244 ~TE~~g~~~~~~~-~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~~~~~~~y 306 (437)
T 2y27_A 244 LSEVMGPGVASEC-VE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKEALPIIRY 306 (437)
T ss_dssp ETTTTEEEEEECC-TT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSSCCCSE
T ss_pred chhhcCCeeEEec-CC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcCCchhhee
Confidence 9998432 33221 11 11124444 578999999 569999999999999998 23344567899
Q ss_pred eeCceeeEcC-CCcE-----EEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCC
Q 009867 390 HTGDIGYFDS-DGYL-----HLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSN 463 (523)
Q Consensus 390 ~TGD~~~~~~-~g~~-----~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 463 (523)
+|||++++++ +|.+ ++.||.+|+||.+|++|+|.+||++|.++|+|.++++++++++..++.+.++|++.++..
T Consensus 307 ~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~ 386 (437)
T 2y27_A 307 RTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA 386 (437)
T ss_dssp EEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT
T ss_pred ecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc
Confidence 9999999999 6985 899999999999999999999999999999999998888877766788888888876543
Q ss_pred ---CCHHHHHHHHHhcCcCC-CCCcEEEEe--CCcCCCCCccccHH
Q 009867 464 ---IDEEEVLRFCKKNVAAF-KVPKRVFIT--NELPKTASGKIQRR 503 (523)
Q Consensus 464 ---~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lp~t~~GK~~r~ 503 (523)
.+.++++++++++|+.+ .+|..+.++ ++||+|+ ||++|.
T Consensus 387 ~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~ 431 (437)
T 2y27_A 387 PDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRV 431 (437)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred chhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence 23477999999999988 599888888 5999999 999986
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=252.04 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=175.9
Q ss_pred CCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHH---HHHhccCCCceEEEEcCh-hhHHHHHHHHHHhhhcCcEEEe
Q 009867 158 NDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI---KSVYKLTESDSTVIVLPL-FHVHGMLAGLLSSFAAGAAVTL 233 (523)
Q Consensus 158 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~g~~~~~ 233 (523)
..++++++++|||||||.||+|.++|+++.....++ ....++.++|++++.+|+ +|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 467899999999999999999999999999888754 355577899999999999 89888877 555588888 555
Q ss_pred CCCCCCChh-----------------------HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCC
Q 009867 234 PAAGRFSAS-----------------------TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSAS 290 (523)
Q Consensus 234 ~~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~ 290 (523)
+. .+++. .+++.++++++|++.++|+++..|++..... ...++++|.+++||++
T Consensus 166 ~~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 166 SI--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-LQMKQSLAQITLGGTE 242 (369)
T ss_dssp CC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-HHHHHHCSEEEEESSC
T ss_pred Cc--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-ccccCCeeEEEECCcc
Confidence 44 34555 7777999999999999999999998764321 1235789999999999
Q ss_pred CCHHHHHHHH-HHh-CCceeccccccccccccccCCCCCCCCCCCCCcccc-------CCcEEEEECC-CCCccCCCcee
Q 009867 291 LAPVILSRLE-EAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-------VGQEIAILDE-IGVPQEGGAKG 360 (523)
Q Consensus 291 ~~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~i~d~-~~~~~~~g~~G 360 (523)
+++++++++. +.| ++++++.||+||+++++..+... ++|+| ++++++++|+ +|++++.|+.|
T Consensus 243 l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--------~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 243 LNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--------SESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--------TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred CCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--------cCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 9999999999 899 89999999999998776544311 35655 4789999996 99999999999
Q ss_pred EEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcCC--C-------cEEEecccccceecCCc
Q 009867 361 EVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD--G-------YLHLVGRIKELINRGGE 418 (523)
Q Consensus 361 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~~~i~~~G~ 418 (523)
||+|++. +...+ ..+|+|||+++..+. | .+..++|.++..++.|.
T Consensus 315 El~vt~l------------~~~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHL------------SPWAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEE------------ETTEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEc------------Ccccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999973 22222 235999999988643 2 24567777777777664
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=109.65 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=73.9
Q ss_pred cccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcC-CCC
Q 009867 407 GRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAA-FKV 482 (523)
Q Consensus 407 GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~-~~~ 482 (523)
.|.||+|+++|.+++|.+||++|.++|+|.++++++.+++..++.+.++++..++...+. +++.+.+++++.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999998888888999998887765553 3455555555543 235
Q ss_pred CcEEEEe--CCcCCCCCccccH
Q 009867 483 PKRVFIT--NELPKTASGKIQR 502 (523)
Q Consensus 483 p~~i~~~--~~lp~t~~GK~~r 502 (523)
|..+.++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 5566666 489998 799987
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=109.06 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=98.9
Q ss_pred chHHHHHHHhcccCCC-----CCCCCCcc---eEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCC
Q 009867 259 VPTIHQIVLDRHVAKP-----EPVYPKLR---FIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPED 328 (523)
Q Consensus 259 ~P~~~~~l~~~~~~~~-----~~~~~~l~---~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~ 328 (523)
.|..++.+.+...... ...+++++ .+..||- .+ -.+.++..+ +.+++ ..|++||+....-..+.
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~--~~-Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~--- 350 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM--AQ-YIPTLDYYSGGLPLACTMYASSECYFGLNLNPM--- 350 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGG--GG-GHHHHHHHHTSCCEECCEEECSSCEEEECSCTT---
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCCh--HH-HHHHHHHHcCCCccccCcccccceeeeeecCCC---
Confidence 4556666655433221 13478855 4444552 22 224444444 67766 89999996422222111
Q ss_pred CCCCCCCcccc--C-CcEEEEEC--CC--------------CCccCCCceeEEEEeCCCcccccCCChhhhhhhccCCee
Q 009867 329 GPHKPGSVGRP--V-GQEIAILD--EI--------------GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF 389 (523)
Q Consensus 329 ~~~~~~~~g~~--~-~~~~~i~d--~~--------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (523)
..++..+.. + ....+.++ +. ...+..|+.+||+++.. .|.|+ |
T Consensus 351 --~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Y 412 (609)
T 4b2g_A 351 --SKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------Y 412 (609)
T ss_dssp --SCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------E
T ss_pred --CCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------e
Confidence 011112221 2 23445553 21 12467899999999874 35555 9
Q ss_pred eeCceeeEcC----CCcEEEecccccceecCCcccChHHHHHHHhc------CCC--ceeeEEEee
Q 009867 390 HTGDIGYFDS----DGYLHLVGRIKELINRGGEKISPIEVDAVLLS------HPD--IAQAVAFGV 443 (523)
Q Consensus 390 ~TGD~~~~~~----~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~------~~~--v~~~~v~~~ 443 (523)
++||++++.. ...+.|.||.++++++.|+++.+.+||+++.+ ..+ |.++.+...
T Consensus 413 r~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d 478 (609)
T 4b2g_A 413 RVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD 478 (609)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred ecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence 9999999873 46799999999999999999999999998863 233 567777643
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=107.58 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCCC---cceEEeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCCCCCCCCCcccc---CCcEEEEEC
Q 009867 277 VYPK---LRFIRSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPEDGPHKPGSVGRP---VGQEIAILD 348 (523)
Q Consensus 277 ~~~~---l~~i~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~i~d 348 (523)
.+++ +..+..||- ..-.+.++..+ +.+++ ..|++||+....-..+. ..++..+.. .....+.++
T Consensus 295 lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~-----~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 295 LWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPL-----CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp HSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTT-----SCGGGCCEEECTTSSEEEEEE
T ss_pred hCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCC-----CCcccCceeecCCcEEEEEEe
Confidence 4788 544555663 22223344444 67777 89999996322212111 011112221 123455554
Q ss_pred --CC--C-----CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCceeeEcC----CCcEEEecccccceec
Q 009867 349 --EI--G-----VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDS----DGYLHLVGRIKELINR 415 (523)
Q Consensus 349 --~~--~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~~~i~~ 415 (523)
+. . ..+..|+.+||++|+. .|.|+ |++||++++.. ...+.|.||.++++.+
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~ 430 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe
Confidence 21 1 2356899999999984 24444 99999999875 4579999999999999
Q ss_pred CCcccChHHHHHHHhcCC--------CceeeEEEee
Q 009867 416 GGEKISPIEVDAVLLSHP--------DIAQAVAFGV 443 (523)
Q Consensus 416 ~G~~v~~~~ie~~l~~~~--------~v~~~~v~~~ 443 (523)
.|+++...+||+++.+.. .|.++.+...
T Consensus 431 ~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~ 466 (581)
T 4eql_A 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYAD 466 (581)
T ss_dssp SSCCEEHHHHHHHHHHC--------------CEEEE
T ss_pred eeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecC
Confidence 999999999999997542 2566666543
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-09 Score=105.46 Aligned_cols=177 Identities=14% Similarity=0.173 Sum_probs=103.7
Q ss_pred chHHHHHHHhcccCC------CCCCCCCcceE--EeccCCCCHHHHHHHHHHh-CCcee-ccccccccccccccCCCCCC
Q 009867 259 VPTIHQIVLDRHVAK------PEPVYPKLRFI--RSCSASLAPVILSRLEEAF-GAPVL-EAYAMTEATHLMSSNPLPED 328 (523)
Q Consensus 259 ~P~~~~~l~~~~~~~------~~~~~~~l~~i--~~~g~~~~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~ 328 (523)
.|..++.+.+..... ....|++++.+ +.+| .+.+. .+.++..+ +.+++ ..|++||+....-..+.
T Consensus 276 ~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G-~~~~Y-~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~--- 350 (581)
T 4epl_A 276 NPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTG-SMEPY-VPKLRHYAGDLPLVSHDYGSSEGWIAANVTPR--- 350 (581)
T ss_dssp CHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSG-GGGGG-HHHHHHHHTTSCEEECCEEETTEEEEECCCTT---
T ss_pred CHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCC-ChHHH-HHHHHHHcCCCccccCceeccceeeeeecCCC---
Confidence 345555555443222 12347888643 3344 22222 24444444 67777 89999996422222211
Q ss_pred CCCCCCCcccc--C-CcEEEEEC--CCC---------CccCCCceeEEEEeCCCcccccCCChhhhhhhccCCeeeeCce
Q 009867 329 GPHKPGSVGRP--V-GQEIAILD--EIG---------VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDI 394 (523)
Q Consensus 329 ~~~~~~~~g~~--~-~~~~~i~d--~~~---------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~ 394 (523)
..++..+.. + ....+.+. +.+ ..+..|+.+||++++.. |.|+ |++||+
T Consensus 351 --~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~ 412 (581)
T 4epl_A 351 --LSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDV 412 (581)
T ss_dssp --SCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEE
T ss_pred --CCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCE
Confidence 111112221 2 22344442 211 24678999999999742 4444 999999
Q ss_pred eeEcCC----CcEEEecccccceecCCcccChHHHHHHHhcC--------CCceeeEEEeecCCCCCceeEEEEEeC
Q 009867 395 GYFDSD----GYLHLVGRIKELINRGGEKISPIEVDAVLLSH--------PDIAQAVAFGVPDDKYGEEINCAIIPR 459 (523)
Q Consensus 395 ~~~~~~----g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~ 459 (523)
+++... ..+.|.||.++++.+.|++++..+||+++.+. -.|.++.+........+ .-++++.+.
T Consensus 413 v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 413 VKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp EEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred EEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 998642 56899999999999999999999999988642 24678877664332222 233445553
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.77 Score=44.46 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=72.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...|+.++|++...++- ....+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEE
Confidence 467999998888888888878899999999999885 355556678889999999977664 78899999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
+..+.....+..
T Consensus 187 ~~~Ps~~~~l~~ 198 (437)
T 2y27_A 187 MVTPSYMLSIAD 198 (437)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988776654443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=92.14 E-value=1 Score=43.65 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...|+.++|++...++- ....+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 467999998888888888888899999999999885 355566778889999999887765 78889999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
...+.....+..
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 987776554433
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=1.1 Score=43.34 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHhcCEEeeCCCCCCHHHHHHHHhhCCceEE
Q 009867 29 FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN--TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLL 106 (523)
Q Consensus 29 ~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n--~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 106 (523)
..+|.+.+...+..++..+...++.++|++....+- ....+...++++..|+.+++.++. +.+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 567999999888888888888899999999999874 455566778899999999887654 77889999999999999
Q ss_pred EecccchhHHHH
Q 009867 107 LTPAEGNAAAQA 118 (523)
Q Consensus 107 i~~~~~~~~~~~ 118 (523)
+..+.....+..
T Consensus 183 ~~~P~~~~~l~~ 194 (436)
T 3qov_A 183 HAIPSYAIRLAE 194 (436)
T ss_dssp ECCHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988776655443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=84.35 E-value=8.9 Score=37.61 Aligned_cols=96 Identities=6% Similarity=-0.014 Sum_probs=71.0
Q ss_pred cCCceeEEECC--------cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHHHHHhcCEEeeCCC
Q 009867 17 FSSKRALSVSG--------KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT-VEFVIMFLAVIRARATAAPLNA 87 (523)
Q Consensus 17 ~p~~~a~~~~~--------~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~-~~~~~~~la~~~~G~~~v~l~~ 87 (523)
.|+.+|++... +..+|.+.+...+..+.. ..++.++|++...+|-. .-.+..+++++..|+.++..+.
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 45777776422 156788888776655443 35889999999988854 4444557888899999888764
Q ss_pred CCCHHHHHHHHhhCCceEEEecccchhHH
Q 009867 88 AYTPDEFEFYLSDSESKLLLTPAEGNAAA 116 (523)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 116 (523)
.+.+.+...+++.++.++...+.....+
T Consensus 238 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l 265 (501)
T 3ipl_A 238 -FNAEQILTMIKNERITHISLVPQTLNWL 265 (501)
T ss_dssp -CCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence 6899999999999999999876655433
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=80.32 E-value=7.6 Score=38.70 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCC
Q 009867 161 SDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAG 237 (523)
Q Consensus 161 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~ 237 (523)
+.++++.+..+.++ ..+|.+.+...+..+.. ..++.++|++...++-.. .++..+++++..|+..+..+.
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~vpl~~- 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND- 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT--TTHHHHHHHHHHTCEEEECCT-
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc--cHHHHHHHHHHcCCEEeecCC-
Confidence 34454444444333 36888888766655543 447899999999988543 345558899999998887664
Q ss_pred CCChhHHHHHHHhcCccEEeechHHHHHHHh
Q 009867 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLD 268 (523)
Q Consensus 238 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 268 (523)
....+.+...++..++..++..+..+..+..
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 6688899999999999999998876665543
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=80.31 E-value=22 Score=35.31 Aligned_cols=104 Identities=7% Similarity=-0.002 Sum_probs=72.6
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHH---HhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS---VYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
++.++++....+..+ -..-.+|...+...+..+.. ..++.++|++...++-.. .++..+++.+..|+..+..+.
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI--DYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH--HHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEEccCC
Confidence 566676544221111 11246788888766665543 447889999999988543 345558899999998887765
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHH
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVL 267 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 267 (523)
....+.+...+++.+++.++..+.....+.
T Consensus 110 -~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 -MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp -TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred -CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 668888999999999999998877665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 523 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-129 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-115 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-109 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-107 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-101 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-95 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-92 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 389 bits (1000), Expect = e-129
Identities = 131/523 (25%), Positives = 210/523 (40%), Gaps = 35/523 (6%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R A + + ++
Sbjct: 104 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 163
Query: 91 PDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG A ++ K N+ A E + L + SD
Sbjct: 164 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 223
Query: 151 NAISKL------------------TNDPSDVALFLHTSGTTSRPKGVPLTQ-NNLAASVS 191
+ + D L+TSG+T +PKGV T L + +
Sbjct: 224 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 283
Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLP--AAGRFSASTFWQDMI 249
K V+ D + V G L A GA + + + Q +
Sbjct: 284 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 343
Query: 250 KYNATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ PT + ++ E LR + S + P + G
Sbjct: 344 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 404 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 462
Query: 365 RG--PNVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGYLHLVGRIKELINRGGEK 419
P + + E + + + +GD D DGY + GR+ +++N G +
Sbjct: 463 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR 522
Query: 420 ISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEE---EVLRFCKKN 476
+ E+++ L++HP IA+A G+P G+ I + G E EV + +K
Sbjct: 523 LGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKE 582
Query: 477 VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAAKVP 519
+ P + T+ LPKT SGKI RRI+ + S
Sbjct: 583 IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDT 625
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 349 bits (896), Expect = e-115
Identities = 131/532 (24%), Positives = 224/532 (42%), Gaps = 23/532 (4%)
Query: 2 EGVTLIGLLNQVIDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVV 58
E + L L + F K +S + TY+ +++ R L A G+ GD V
Sbjct: 9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68
Query: 59 ALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQA 118
A N + + AV A N +P E + L+ +E K+LL +A
Sbjct: 69 ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128
Query: 119 AASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKG 178
+L + + E L A+ E+ + +T+GTT PKG
Sbjct: 129 IRGELKTVQHFVVMDEKAPEGYL--AYEEALGEEADPVRVPERAACGMAYTTGTTGLPKG 186
Query: 179 VPLTQNNLAASV--SNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236
V + L +++ L+E D + V+P+FHV+ ++ V
Sbjct: 187 VVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG-- 244
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
R ++ + T+ VPT+ + D + LR + ++ ++
Sbjct: 245 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLI 303
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPL--------PEDGPHKPGSVGRPV-GQEIAIL 347
+R E G V + Y +TE + ++ N + E+ G P+ + +
Sbjct: 304 ARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 362
Query: 348 DEIG--VPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLH 404
DE G VP++G A GEV ++GP +T GY N EA +SA G+F TGDI +D +GY+
Sbjct: 363 DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVE 422
Query: 405 LVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464
+ R+K+LI GGE IS ++++ L+ HP + +A +P K+ E ++PR
Sbjct: 423 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT 482
Query: 465 DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSAA 516
EE K A +++P E+P+T++GK +R + E + A
Sbjct: 483 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGGA 534
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 336 bits (862), Expect = e-109
Identities = 112/520 (21%), Positives = 215/520 (41%), Gaps = 43/520 (8%)
Query: 31 LTYSRIHELVERAASRLVAA-GINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAY 89
+TY + E V + A L + G+ GD VA+ P E +I LA+ R A + + A +
Sbjct: 91 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESD 149
+ + ++D +SK+++T E N + +K + A L ++ S
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210
Query: 150 TNAISKLTN-----------------DPSDVALFLHTSGTTSRPKGVPLT-QNNLAASVS 191
+ + D D L+TSG+T PKGV + L ++
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270
Query: 192 NIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTL--PAAGRFSASTFWQDMI 249
++ + + D + + G + G A + + S +W +
Sbjct: 271 TMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIID 330
Query: 250 KYNATWYTAVPTIHQIVLDRHVAKPEP-VYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
++ T + PT +++ + E LR + S +A + E G
Sbjct: 331 EHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIG--VPQEGGAKGEV 362
P+++ Y TE+ + + P KPGS P G + +LD A+G +
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL 450
Query: 363 CIRG--PNVTKGYKNNPEANKSAFL---FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
++ P+ + N + +L G++ TGD D DGY+ ++GR+ +++N G
Sbjct: 451 AVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSG 510
Query: 418 EKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDE----------E 467
++S E++A ++ P +A+ G DD G+ + ++ + S+ +
Sbjct: 511 HRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKK 570
Query: 468 EVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
++ +K++ F PK + + ++LPKT SGKI RRI+ +
Sbjct: 571 HLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 610
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 329 bits (845), Expect = e-107
Identities = 127/531 (23%), Positives = 228/531 (42%), Gaps = 28/531 (5%)
Query: 1 MEGVTLIGLLNQVIDQFSSKRAL----SVSGKFDLTYSRIHELVERAASRLVAAGINAGD 56
+E T L++ + +++ + ++TY+ E+ R A + G+N
Sbjct: 14 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNH 73
Query: 57 VVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAA 116
+ + N+++F + L + AP N Y E ++ S+ ++ +G
Sbjct: 74 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 133
Query: 117 QAAASKLNISHATATL---------LDADSELTLSLAHSESDTNAISKLTNDPSDVALFL 167
KL I + + +T L ++ + + + + +AL +
Sbjct: 134 LNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIM 193
Query: 168 HTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSS 224
++SG+T PKGV L S+ + ++ + + V+P H GM L
Sbjct: 194 NSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL 253
Query: 225 FAAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFI 284
V + RF F + + Y VPT+ + + L I
Sbjct: 254 ICGFRVVLMY---RFEEELFLRSLQDYKIQSALLVPTLFSF-FAKSTLIDKYDLSNLHEI 309
Query: 285 RSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQ 342
S A L+ + + + F P + + Y +TE T + P +G KPG+VG+ V
Sbjct: 310 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP---EGDDKPGAVGKVVPFF 366
Query: 343 EIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSD 400
E ++D + G +GE+C+RGP + GY NNPEA + GW H+GDI Y+D D
Sbjct: 367 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 426
Query: 401 GYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRE 460
+ +V R+K LI G +++P E++++LL HP+I A G+PDD GE ++
Sbjct: 427 EHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 486
Query: 461 GSNIDEEEVLRFCKKNVAAFK-VPKRVFITNELPKTASGKIQRRIVSEHFL 510
G + E+E++ + V K + V +E+PK +GK+ R + E +
Sbjct: 487 GKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILI 537
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 311 bits (798), Expect = e-101
Identities = 96/511 (18%), Positives = 202/511 (39%), Gaps = 33/511 (6%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPN 64
T+ L + + + + A+ + LTY ++ + A + GI +V +
Sbjct: 24 TIHQLFEEQVSKRPNNVAIVCENE-QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK 82
Query: 65 TVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLN 124
+++ I LAV++A P++ Y + ++ L DS++++LLT
Sbjct: 83 SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQ 142
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQN 184
+ + L + + +D+A ++TSGTT PKG L
Sbjct: 143 VEIFEEDTIKIREGTNLHVP-------------SKSTDLAYVIYTSGTTGNPKGTMLEHK 189
Query: 185 NLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSASTF 244
++ ++ +TE D + + ++ + + F
Sbjct: 190 GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF 249
Query: 245 WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG 304
Q + + T T PT + + ++ + + ++ +P ++++ +E
Sbjct: 250 EQYINQKEITVITLPPTYVVHLDPERI-------LSIQTLITAGSATSPSLVNKWKE--K 300
Query: 305 APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEVC 363
+ AY TE T ++ ++ +G P+ +I I+DE + G GE+C
Sbjct: 301 VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELC 360
Query: 364 IRGPNVTKGYKNNPEANKSAFLF-------GWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
I G + +GY PE F+ + TGD + SDG + +GRI +
Sbjct: 361 IGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR 420
Query: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN 476
G ++ EV+++LL H I++ D + + + + I E++ +F +
Sbjct: 421 GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEE 478
Query: 477 VAAFKVPKRVFITNELPKTASGKIQRRIVSE 507
+ + +P +++P T++GKI R+ + E
Sbjct: 479 LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 297 bits (760), Expect = 3e-95
Identities = 117/518 (22%), Positives = 210/518 (40%), Gaps = 11/518 (2%)
Query: 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
G T LL ++ + A+ G +Y + +R A+ GI D V +
Sbjct: 24 GETFGDLLRDRAAKYGDRIAI-TCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 63 PNTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASK 122
PN EF + A+ R A ++ E ++ +E+ + P + + ++
Sbjct: 83 PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 123 LNISH-ATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPL 181
S T + E L + T + SDVA + G+T K +P
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPR 202
Query: 182 TQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSA 241
T ++ S+ V L S + LP+ H + + + + + + S
Sbjct: 203 THDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG-GRVVLSPSPSP 261
Query: 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEE 301
+ + + T VP + + + L+ ++ A + R++
Sbjct: 262 DDAFPLIEREKVTITALVPPLAMV-WMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320
Query: 302 AFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAK 359
FG + + + M L++ L + + G+P+ E + D+ + G
Sbjct: 321 VFGCTLQQVFGMA--EGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET 378
Query: 360 GEVCIRGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGE 418
G + RGP +GY E N ++F G++ TGDI DGY+ + GR K+ INRGGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 419 KISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK-KNV 477
K++ EV+ LL+HP + A +PD GE IIPR+ + E+ F + + +
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLRERGL 497
Query: 478 AAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515
AA+K+P RV P+T GK+ ++ + E ++ A
Sbjct: 498 AAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 288 bits (738), Expect = 3e-92
Identities = 116/506 (22%), Positives = 196/506 (38%), Gaps = 11/506 (2%)
Query: 5 TLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFP 63
T+ +L + + AL+V + LT++ + VE A+RL A G+ VA+ P
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 64 NTVEFVIMFLAVIRARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL 123
N+ + VI LA+ R A A LN E + E + A S
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 124 NISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQ 183
L D E S I +P+ A +TSGTT PK + Q
Sbjct: 123 GARIIFLGDLVRDGE-------PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ 175
Query: 184 NNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAST 243
+ V + + L V++ + H + + A T F
Sbjct: 176 RAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD 235
Query: 244 FWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY-PKLRFIRSCSASLAPVILSRLEEA 302
Q + + T A PT + + LR + A++ +L + +
Sbjct: 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295
Query: 303 FGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEV 362
+ Y TEA + + P+ G V + G +
Sbjct: 296 LPGEKVNIYGTTEAMNSLYMRQ-PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELI 354
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISP 422
+ GY N P+A GW+ T D+ + +G + ++GR+ ++I GGE I P
Sbjct: 355 VAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
Query: 423 IEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKKN-VAAFK 481
E++ VL + P + + V G+ D ++G+ + ++PR G + + + FC+ + +A FK
Sbjct: 415 SEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFK 474
Query: 482 VPKRVFITNELPKTASGKIQRRIVSE 507
PKR FI ++LPK A K+ RR + +
Sbjct: 475 RPKRYFILDQLPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 523 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 87.79 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.9e-78 Score=626.04 Aligned_cols=507 Identities=25% Similarity=0.377 Sum_probs=420.5
Q ss_pred CHH-HHHHHHHhhcCCceeEEECC-----cccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 5 TLI-GLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 5 ti~-~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
|+. .+|+++++.+||++|+++.+ .+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 72 N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~ 151 (643)
T d1pg4a_ 72 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 151 (643)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHh
Confidence 444 36667888899999999642 268999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccch---------hHHHHHHhhcc---cccceeeeecCCcccccc----
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGN---------AAAQAAASKLN---ISHATATLLDADSELTLS---- 142 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---- 142 (523)
|++++|+++.++.+++.+++++++++++|+++... ........... +...+. ...........
T Consensus 152 Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 230 (643)
T d1pg4a_ 152 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIV-LKRTGSDIDWQEGRD 230 (643)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEE-ECSSCCCCCCCBTTE
T ss_pred CeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEE-eccCCcccccccccc
Confidence 99999999999999999999999999999986532 11112111111 111111 11111000000
Q ss_pred --ccc-ccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHH-HHHHHHhccCCCceEEEEcChhhHHHHH
Q 009867 143 --LAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASV-SNIKSVYKLTESDSTVIVLPLFHVHGML 218 (523)
Q Consensus 143 --~~~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 218 (523)
... .............+++++++++|||||||.||+|+++|.+++... ......+++.++|++++.+|++|.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 310 (643)
T d1pg4a_ 231 LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 310 (643)
T ss_dssp EEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred hhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHH
Confidence 000 011112223334567899999999999999999999999976554 4456667899999999999999999988
Q ss_pred HHHHHhhhcCcEEEeCCCC--CCChhHHHHHHHhcCccEEeechHHHHHHHhcccC-CCCCCCCCcceEEeccCCCCHHH
Q 009867 219 AGLLSSFAAGAAVTLPAAG--RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVA-KPEPVYPKLRFIRSCSASLAPVI 295 (523)
Q Consensus 219 ~~~~~~l~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~~~~l~~i~~~g~~~~~~~ 295 (523)
..++++|..|+++++.++. ..++..+++.++++++|+++++|++++.|++.... ....++++||.+.++|+++++++
T Consensus 311 ~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~ 390 (643)
T d1pg4a_ 311 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA 390 (643)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHH
Confidence 8788999999999986532 34788999999999999999999999999877543 23346889999999999999999
Q ss_pred HHHHHHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeC--CCc
Q 009867 296 LSRLEEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRG--PNV 369 (523)
Q Consensus 296 ~~~~~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~ 369 (523)
.+++.+.++ +++++.||+||++++++... ........+++|+| +|++++++|++|++++.|+.|||+|+| |++
T Consensus 391 ~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~-~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~ 469 (643)
T d1pg4a_ 391 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPL-PGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQ 469 (643)
T ss_dssp HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC-TTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTC
T ss_pred HHHHHHHhCCCCceEEEeechhhccceEEecC-CCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcc
Confidence 999999984 77999999999997766543 23334567889999 799999999999999999999999999 468
Q ss_pred ccccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCC
Q 009867 370 TKGYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDD 446 (523)
Q Consensus 370 ~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~ 446 (523)
+.||+++++.+...+ .+|||+|||+|++|++|.+++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~ 549 (643)
T d1pg4a_ 470 ARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA 549 (643)
T ss_dssp CCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred cccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECC
Confidence 899999988766654 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhh
Q 009867 447 KYGEEINCAIIPREGSNIDE---EEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQV 513 (523)
Q Consensus 447 ~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~ 513 (523)
..++.++++|++.++...+. ++|+++++++|++|++|+.|+++++||+|++||++|+.|++++..+.
T Consensus 550 ~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 619 (643)
T d1pg4a_ 550 IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 619 (643)
T ss_dssp TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCCc
Confidence 88899999999998876665 47999999999999999999999999999999999999999987643
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.8e-74 Score=590.35 Aligned_cols=504 Identities=25% Similarity=0.429 Sum_probs=413.0
Q ss_pred CCCCHHHHHHHHHhhc---CCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 009867 2 EGVTLIGLLNQVIDQF---SSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIR 77 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~---p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~ 77 (523)
+..|+.++|.++++++ |+++|+++.+. +++||+||++++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~ 94 (541)
T d1lcia_ 15 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94 (541)
T ss_dssp CSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4579999999999988 77788887543 6899999999999999999999999999999999999999999999999
Q ss_pred hcCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCccccc-cc--------ccccc
Q 009867 78 ARATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTL-SL--------AHSES 148 (523)
Q Consensus 78 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~ 148 (523)
+|++++|+++.++.+++.++|+.++++++|++++....+.......+................. .+ .....
T Consensus 95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (541)
T d1lcia_ 95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFN 174 (541)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCC
T ss_pred hCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhhhcccccc
Confidence 9999999999999999999999999999999998888877777665544333322221111000 00 00011
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHh---ccCCCceEEEEcChhhHHHHHHHHHHhh
Q 009867 149 DTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY---KLTESDSTVIVLPLFHVHGMLAGLLSSF 225 (523)
Q Consensus 149 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~~~~~~~l 225 (523)
.....+.....++++++++|||||||.||+|.++|.+++.......... .+.++++++..+|++|..+... .+..+
T Consensus 175 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~ 253 (541)
T d1lcia_ 175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLGYL 253 (541)
T ss_dssp TTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHHHH
T ss_pred ccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccc-ccccc
Confidence 1122233445678999999999999999999999999987766554333 4678899999999999988777 55666
Q ss_pred hcCcEEEeCCCCCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCC
Q 009867 226 AAGAAVTLPAAGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305 (523)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~ 305 (523)
..++..+... ..+.......+..+++|.++++|.++..+........ .++++++.+.+||+.+++...+++.+.++.
T Consensus 254 ~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~-~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~ 330 (541)
T d1lcia_ 254 ICGFRVVLMY--RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKRFHL 330 (541)
T ss_dssp HHTCEEEECS--SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGG-SCCTTCCEEECTTCCCCHHHHHHHHHHTTC
T ss_pred cccccccccc--ccccchhHHHHhhhhccccccCccccccccccccccc-cccccceEEEecccccccccccccccccCC
Confidence 6666666655 5688889999999999999999999999987765544 457899999999999999999999999865
Q ss_pred -ceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEEC-CCCCccCCCceeEEEEeCCCcccccCCChhhhhh
Q 009867 306 -PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKS 382 (523)
Q Consensus 306 -~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 382 (523)
.+++.||+||+++.++.... .....+++|+| ++++++++| ++|.+++.|+.|||+|+|++++.||++++..+..
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~---~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~ 407 (541)
T d1lcia_ 331 PGIRQGYGLTETTSAILITPE---GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 407 (541)
T ss_dssp SCCBCEECCGGGSSCSEECCC---C---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHH
T ss_pred ceeeecCCccccCceEEecCc---ccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhh
Confidence 58899999999988877653 34566789999 799999999 6789999999999999999999999999888877
Q ss_pred hc-cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCC
Q 009867 383 AF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREG 461 (523)
Q Consensus 383 ~~-~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 461 (523)
.+ .++||+|||+++++++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+++++
T Consensus 408 ~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~ 487 (541)
T d1lcia_ 408 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487 (541)
T ss_dssp HBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred cccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCC
Confidence 76 57899999999999999999999999999999999999999999999999999999999988888999999999988
Q ss_pred CCCCHHHHHHHHHhcCcCC-CCCcEEEEeCCcCCCCCccccHHHHHHHHHHh
Q 009867 462 SNIDEEEVLRFCKKNVAAF-KVPKRVFITNELPKTASGKIQRRIVSEHFLAQ 512 (523)
Q Consensus 462 ~~~~~~~l~~~~~~~l~~~-~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~ 512 (523)
...+.+++++++++++.++ ++|..++++++||+|++||++|++|++++.++
T Consensus 488 ~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 488 KTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp CCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence 8889999999999999876 57999999999999999999999999999875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.4e-75 Score=602.96 Aligned_cols=508 Identities=21% Similarity=0.353 Sum_probs=410.7
Q ss_pred HHHHHHHHhhcCCceeEEECC-----cccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHhcC
Q 009867 7 IGLLNQVIDQFSSKRALSVSG-----KFDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRARA 80 (523)
Q Consensus 7 ~~~l~~~a~~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~A~~L~-~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 80 (523)
..+|+++|+++|+++|+++.+ .+++||+||+++++++|++|+ ++|+++||+|+++++|++++++++|||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 678889999999999998642 268999999999999999997 57999999999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHhhCCceEEEecccchhH------HHHHHhh---cccccceeeeecCC-cccccc------c-
Q 009867 81 TAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAA------AQAAASK---LNISHATATLLDAD-SELTLS------L- 143 (523)
Q Consensus 81 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~-~~~~~~------~- 143 (523)
+++|+++.++.+++.++++++++++++++...... ...+... .............. ...... .
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWA 221 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccccc
Confidence 99999999999999999999999999988654311 1111111 11111011011000 000000 0
Q ss_pred ccccccccccccCCCCCCCeEEEEEeeCCCCCCcceeechHHHHHHHHH-HHHHhccCCCceEEEEcChhhHHHHHHHHH
Q 009867 144 AHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN-IKSVYKLTESDSTVIVLPLFHVHGMLAGLL 222 (523)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 222 (523)
................++++++++|||||||.||+|+++|.+++..... ....+.+.++|++++.+|++|.+|....++
T Consensus 222 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~ 301 (640)
T d1ry2a_ 222 TEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY 301 (640)
T ss_dssp HHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTH
T ss_pred ccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHH
Confidence 0001111222333446789999999999999999999999998776544 445668899999999999999999888889
Q ss_pred HhhhcCcEEEeCCCCC--CChhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHH
Q 009867 223 SSFAAGAAVTLPAAGR--FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRL 299 (523)
Q Consensus 223 ~~l~~g~~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~ 299 (523)
.++..|+++++.+... .++..+++.++++++|++.++|++++.|.+..... ...+++++|.+.++|+++++++.+++
T Consensus 302 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~ 381 (640)
T d1ry2a_ 302 GPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381 (640)
T ss_dssp HHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHH
Confidence 9999999887755322 37889999999999999999999999998765432 33468999999999999999999999
Q ss_pred HHHhC---CceeccccccccccccccCCCCCCCCCCCCCcccc-CCcEEEEECCCCC--ccCCCceeEEEEeC--CCccc
Q 009867 300 EEAFG---APVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGV--PQEGGAKGEVCIRG--PNVTK 371 (523)
Q Consensus 300 ~~~~~---~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~--~~~~g~~Gel~v~~--~~~~~ 371 (523)
.+.+| ..+++.||+||++................+++|+| +|++++++|+++. ..+.++.|||++++ |+++.
T Consensus 382 ~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~ 461 (640)
T d1ry2a_ 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFAR 461 (640)
T ss_dssp HHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCC
T ss_pred HHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCccc
Confidence 99985 46899999999998777665555555677899999 7999999995553 33556789999999 58999
Q ss_pred ccCCChhhhhhhc---cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCC
Q 009867 372 GYKNNPEANKSAF---LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKY 448 (523)
Q Consensus 372 gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~ 448 (523)
||+++++.+.+.+ .+|||+|||+|++|++|.+++.||+||+||.+|++|+|.+||++|.++|+|.+++|++++++..
T Consensus 462 gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ 541 (640)
T d1ry2a_ 462 TIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLT 541 (640)
T ss_dssp EETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTT
T ss_pred ccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCC
Confidence 9999999888876 3489999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeEEEEEeCCCCCCC----------HHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 449 GEEINCAIIPREGSNID----------EEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 449 ~~~~~~~v~~~~~~~~~----------~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
++.++++|+++++.... .++++++++++|++|++|+.|+++++||+|++||++|++|++++.++..
T Consensus 542 ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~ 617 (640)
T d1ry2a_ 542 GQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 617 (640)
T ss_dssp SCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC----
T ss_pred CeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCcc
Confidence 99999999988764322 2568889999999999999999999999999999999999999876543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-75 Score=596.75 Aligned_cols=508 Identities=25% Similarity=0.365 Sum_probs=386.5
Q ss_pred CCCCHHHHHHHHHhhcCCceeEEECCc---ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Q 009867 2 EGVTLIGLLNQVIDQFSSKRALSVSGK---FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRA 78 (523)
Q Consensus 2 ~~~ti~~~l~~~a~~~p~~~a~~~~~~---~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 78 (523)
+.+||.++|+++|+++|+++|+++.++ +++||+||+++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 88 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 88 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987543 56999999999999999999999999999999999999999999999999
Q ss_pred cCEEeeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCC
Q 009867 79 RATAAPLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTN 158 (523)
Q Consensus 79 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (523)
|++++|++|.++.+++.++++.++++.++++.............................. .................
T Consensus 89 G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 166 (534)
T d1v25a_ 89 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG--YLAYEEALGEEADPVRV 166 (534)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTT--CEEHHHHCCSCCCCCCC
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccc--ccccccccccccccccc
Confidence 9999999999999999999999999999999888877766655543222221111111110 01111111122233345
Q ss_pred CCCCeEEEEEeeCCCCCCcceeechHHHHHHHHH--HHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC
Q 009867 159 DPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSN--IKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA 236 (523)
Q Consensus 159 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 236 (523)
.++++++++|||||||.||+|.++|.+++..... ....+.....++++..+|++|..++...+...+..|.++.+.+
T Consensus 167 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~- 245 (534)
T d1v25a_ 167 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP- 245 (534)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT-
T ss_pred ccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccc-
Confidence 6789999999999999999999999999866544 3444557789999999999999988885555554444554444
Q ss_pred CCCChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccc
Q 009867 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316 (523)
Q Consensus 237 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~ 316 (523)
.+++..+...+.++++|.+.++|+++..++....... .+++++|.+++||++++++..+++. .++.++++.||+||+
T Consensus 246 -~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-~~~~~lr~~~~gG~~~~~~~~~~~~-~~~~~i~~~yG~te~ 322 (534)
T d1v25a_ 246 -RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTET 322 (534)
T ss_dssp -CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-CCCSSCCEEEECSSCCCHHHHHHHH-HTTCEEEEEEECGGG
T ss_pred -cccccccchhhhhccccccccCchhhhhhhhhhcccc-ccccceeEEEEecCCCCHHHHHHHH-HhCCeeeeecccccc
Confidence 6789999999999999999999999999987655443 4578999999999999999999887 458999999999999
Q ss_pred ccccccCCCCCCCCC--------CCCCcccc-CCcEEEEECCCCCccCC--CceeEEEEeCCCcccccCCChhhhhhhc-
Q 009867 317 THLMSSNPLPEDGPH--------KPGSVGRP-VGQEIAILDEIGVPQEG--GAKGEVCIRGPNVTKGYKNNPEANKSAF- 384 (523)
Q Consensus 317 ~~~~~~~~~~~~~~~--------~~~~~g~~-~~~~~~i~d~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~- 384 (523)
+..+........... ..+++|+| +|++++++|+++++++. ++.|||+|+|++++.||+++++.+...+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~ 402 (534)
T d1v25a_ 323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT 402 (534)
T ss_dssp SSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBC
T ss_pred ccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcc
Confidence 988776543221111 22578999 79999999999988865 7899999999999999999999998887
Q ss_pred cCCeeeeCceeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCC
Q 009867 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNI 464 (523)
Q Consensus 385 ~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 464 (523)
.+|||+|||+|+++++|.+++.||.+|+||.+|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+++++...
T Consensus 403 ~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~ 482 (534)
T d1v25a_ 403 PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT 482 (534)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------
T ss_pred cCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999888888888888765444
Q ss_pred CHHHHHHHHHhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhhh
Q 009867 465 DEEEVLRFCKKNVAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVSA 515 (523)
Q Consensus 465 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~~ 515 (523)
.++.+...+++.|++|++|..|+++++||+|++||++|++|+++|.+..++
T Consensus 483 ~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~~~~ 533 (534)
T d1v25a_ 483 PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 533 (534)
T ss_dssp -----------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred HHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhhhCc
Confidence 434444457888999999999999999999999999999999999876553
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-71 Score=569.12 Aligned_cols=503 Identities=23% Similarity=0.364 Sum_probs=420.5
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.||.++|.++|+++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~~-~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~ 102 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCGN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECC-EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 4699999999999999999999987 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhc---ccccceeeeecCCcccccccccccccccccccCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKL---NISHATATLLDADSELTLSLAHSESDTNAISKLTND 159 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (523)
+|++|.++.+++.++|+.++++++++++............. ..................... .............
T Consensus 103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 180 (536)
T d1mdba_ 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLE--DLHTEPVKLPEVK 180 (536)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGG--GCCCCCCCCCCCC
T ss_pred EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchh--hcccCCcCCCccC
Confidence 99999999999999999999999999865543221111110 000000001110000000011 1111222233457
Q ss_pred CCCeEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHH-hhhcCcEEEeCCCCC
Q 009867 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLS-SFAAGAAVTLPAAGR 238 (523)
Q Consensus 160 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~-~l~~g~~~~~~~~~~ 238 (523)
++++++++|||||||.||+|.++|.++...+......+++.+++++++..|+.|.+++...++. .+..|.+++..+ .
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~--~ 258 (536)
T d1mdba_ 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP--S 258 (536)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS--S
T ss_pred ccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeeccccccccccccccccC--C
Confidence 8899999999999999999999999999999999999999999999999999999987654444 444466776665 6
Q ss_pred CChhHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceecccccccccc
Q 009867 239 FSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATH 318 (523)
Q Consensus 239 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~ 318 (523)
+++..++..+++++++.+..+|..+..+........ ...++++.+++||+.+++...+++.+.++......|+.+|.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (536)
T d1mdba_ 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV 337 (536)
T ss_dssp SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCE
T ss_pred CCHHHHHHHHhhhccccccccchhhhhhhhhccccc-cccCcceeEEEeccccccccccchhhccCceeeeccccccccc
Confidence 789999999999999999999999998877755544 4578999999999999999999999999999999999988775
Q ss_pred ccccCCCCCCCCCCCCCcccc--CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhc-cCCeeeeCcee
Q 009867 319 LMSSNPLPEDGPHKPGSVGRP--VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIG 395 (523)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~g~~--~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~ 395 (523)
.+..... ......+++|.| ++..+.+.+++|++++.++.|||+++|+.++.||++++..+...+ .++||+|||++
T Consensus 338 ~~~~~~~--~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~ 415 (536)
T d1mdba_ 338 NYTRLDD--PEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415 (536)
T ss_dssp EECCTTS--CHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEE
T ss_pred ccccccc--ccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccc
Confidence 5544431 122234578888 356777888999999999999999999999999999998888777 56899999999
Q ss_pred eEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 009867 396 YFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCKK 475 (523)
Q Consensus 396 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 475 (523)
++++||.+++.||.+|++|.+|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++ ..+.+++++++++
T Consensus 416 ~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~ 494 (536)
T d1mdba_ 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRE 494 (536)
T ss_dssp EECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHH
T ss_pred cccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988888888888888765 4578899999987
Q ss_pred c-CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHHHHhhh
Q 009867 476 N-VAAFKVPKRVFITNELPKTASGKIQRRIVSEHFLAQVS 514 (523)
Q Consensus 476 ~-l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~~~~~~ 514 (523)
+ |+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus 495 ~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred cCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHHh
Confidence 5 99999999999999999999999999999999988764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.4e-71 Score=565.03 Aligned_cols=479 Identities=20% Similarity=0.326 Sum_probs=402.7
Q ss_pred CCCHHHHHHHHHhhcCCceeEEECCcccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 3 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
+.||.++|+++|+++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+++++|+.++++++|||+++|+++
T Consensus 22 ~~tl~~l~~~~a~~~Pd~~Al~~~~-~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~ 100 (514)
T d1amua_ 22 DKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 100 (514)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETT-EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHhCCCCeEEEECC-eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 5799999999999999999999987 699999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|+++.++.+++.++++.+++++++++......+... ....... ... .................+++
T Consensus 101 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----~~~~~~~-~~~--------~~~~~~~~~~~~~~p~~~~d 167 (514)
T d1amua_ 101 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVE-IFE--------EDTIKIREGTNLHVPSKSTD 167 (514)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEE-ECC--------CSTTTTSCCSCCCCCCCTTS
T ss_pred EEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh----ccccccc-ccc--------cccccccccccCCCCCCccc
Confidence 9999999999999999999999999987765433211 1000000 000 00001111112223346789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCC-CCCCh
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAA-GRFSA 241 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~-~~~~~ 241 (523)
+++++|||||||.||+|.++|.++..........+...+.++++...|+.|..++.. ++.++..|+++++... ...+.
T Consensus 168 ~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 246 (514)
T d1amua_ 168 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDF 246 (514)
T ss_dssp EEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCH
T ss_pred ceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc-ccccccccccccccccccccch
Confidence 999999999999999999999999999999999999999999999999999988876 6677777887777553 23456
Q ss_pred hHHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccccc
Q 009867 242 STFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321 (523)
Q Consensus 242 ~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 321 (523)
...++.+..+.++.+...|...... ....+.+++.++++|+.+++++.+++.+ ++.+++.||+||++.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~ 317 (514)
T d1amua_ 247 VKFEQYINQKEITVITLPPTYVVHL-------DPERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICAT 317 (514)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHTTS-------CTTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSE
T ss_pred hhhhhhhhhhhcccccceeeecccc-------cccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeee
Confidence 7788899999999999999764422 1234789999999999999999887655 678999999999998877
Q ss_pred cCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCCCcccccCCChhhhhhhcc-------CCeeeeCc
Q 009867 322 SNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-------FGWFHTGD 393 (523)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~~~~~TGD 393 (523)
...............+.+ ++..+.+.|+++++++.|+.|||+|+||+++.||++++..+...|. +|||+|||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD 397 (514)
T d1amua_ 318 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD 397 (514)
T ss_dssp EEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred eccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECC
Confidence 655444344444556666 6789999999999999999999999999999999999998888763 57999999
Q ss_pred eeeEcCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 009867 394 IGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFC 473 (523)
Q Consensus 394 ~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 473 (523)
+|++|++|.+++.||.+|+|+.+|++|+|.+||++|.++++|.+++|++.+++..++.+++++++.++ .+.+++++++
T Consensus 398 ~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--~~~~~l~~~~ 475 (514)
T d1amua_ 398 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFS 475 (514)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CCHHHHHHHH
T ss_pred EEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888889888888665 5789999999
Q ss_pred HhcCcCCCCCcEEEEeCCcCCCCCccccHHHHHH
Q 009867 474 KKNVAAFKVPKRVFITNELPKTASGKIQRRIVSE 507 (523)
Q Consensus 474 ~~~l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~ 507 (523)
+++|++|++|..++++++||+|++||++|++|++
T Consensus 476 ~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 476 SEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp HHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred HhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 9999999999999999999999999999998875
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.3e-67 Score=532.73 Aligned_cols=494 Identities=24% Similarity=0.366 Sum_probs=409.2
Q ss_pred CCHHHHHHHHHhhcCCceeEEECCc-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhcCEE
Q 009867 4 VTLIGLLNQVIDQFSSKRALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRARATA 82 (523)
Q Consensus 4 ~ti~~~l~~~a~~~p~~~a~~~~~~-~~~Ty~el~~~~~~~A~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 82 (523)
.||.++|+++|+++|+++|+++.++ +++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 5899999999999999999998653 689999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhCCceEEEecccchhHHHHHHhhcccccceeeeecCCcccccccccccccccccccCCCCCCC
Q 009867 83 APLNAAYTPDEFEFYLSDSESKLLLTPAEGNAAAQAAASKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSD 162 (523)
Q Consensus 83 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (523)
+|++|.++.+++.+++++++++++|++....... ...........+ .+.+.. ..................+++
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 154 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD-AIFQSGSGARII-FLGDLV-----RDGEPYSYGPPIEDPQREPAQ 154 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH-HHHHTTCCCEEE-EHHHHE-----ETTEECCCSCCCCCCCCCTTS
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHH-HHhhhccccccc-cchhhh-----hhhcccccCCccccccchhhh
Confidence 9999999999999999999999999887643222 222121111111 111000 000001111222233456789
Q ss_pred eEEEEEeeCCCCCCcceeechHHHHHHHHHHHHHhc--cCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q 009867 163 VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYK--LTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFS 240 (523)
Q Consensus 163 ~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 240 (523)
+++++|||||||.||+|.++|.++..........+. ....++.+..+|+.|..+.....+.+...++.+++.. .++
T Consensus 155 ~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 232 (503)
T d3cw9a1 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFR 232 (503)
T ss_dssp EEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECS--SCC
T ss_pred hhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccccc--ccC
Confidence 999999999999999999999999988887776654 3456889999999888888877888888888888877 678
Q ss_pred hhHHHHHHHhcCccEEeechHHHHHHHhcccCC-CCCCCCCcceEEeccCCCCHHHHHHHHHHhCCceeccccccccccc
Q 009867 241 ASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319 (523)
Q Consensus 241 ~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~~~l~~i~~~g~~~~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 319 (523)
+..++..+..++++.+..+|..+..+....... .....+++|.+++||++++++....+...++..+.+.||++|++..
T Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~ 312 (503)
T d3cw9a1 233 PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS 312 (503)
T ss_dssp HHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEE
T ss_pred hHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccccccccccccccccee
Confidence 999999999999999999999988776653332 2344689999999999999999999999999999999999999877
Q ss_pred cccCCCCCCCCCCCCCcccc-CCcEEEEECCCCCccCCCceeEEEEeCC-CcccccCCChhhhhhhccCCeeeeCceeeE
Q 009867 320 MSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGP-NVTKGYKNNPEANKSAFLFGWFHTGDIGYF 397 (523)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~~-~~~~~~i~d~~~~~~~~g~~Gel~v~~~-~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~ 397 (523)
+....... ......+.+ ......+.+..+..++.|+.|++.+.+. ....+|++++..+.+.+.+|||+|||+|++
T Consensus 313 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~ 389 (503)
T d3cw9a1 313 LYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVW 389 (503)
T ss_dssp EEEESCSS---SSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEE
T ss_pred eeeccccc---cccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhcCCceeccccccc
Confidence 66654321 111222222 2233444558888999999998887775 566788999999999999999999999999
Q ss_pred cCCCcEEEecccccceecCCcccChHHHHHHHhcCCCceeeEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH-hc
Q 009867 398 DSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSNIDEEEVLRFCK-KN 476 (523)
Q Consensus 398 ~~~g~~~~~GR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~ 476 (523)
++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+++.+...+.++++++++ ++
T Consensus 390 ~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~ 469 (503)
T d3cw9a1 390 TPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469 (503)
T ss_dssp CTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSS
T ss_pred ccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999888888899999999888889999999995 67
Q ss_pred CcCCCCCcEEEEeCCcCCCCCccccHHHHHHHH
Q 009867 477 VAAFKVPKRVFITNELPKTASGKIQRRIVSEHF 509 (523)
Q Consensus 477 l~~~~~p~~i~~~~~lp~t~~GK~~r~~l~~~~ 509 (523)
|+.|++|+.|+++++||+|++||++|++|++++
T Consensus 470 l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 470 LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 999999999999999999999999999998875
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=87.79 E-value=1.6 Score=41.04 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=78.5
Q ss_pred EEEeeCCCCCCcceeechHHHHHHHHHH---HHHhccCCCceEEEEcChhhHHHHHHHHHHhhhcCcEEEeCCCCCCChh
Q 009867 166 FLHTSGTTSRPKGVPLTQNNLAASVSNI---KSVYKLTESDSTVIVLPLFHVHGMLAGLLSSFAAGAAVTLPAAGRFSAS 242 (523)
Q Consensus 166 i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 242 (523)
+.++.+.++ ..+|++.+...+..+ ....++.++|++...++-.. .+...+++++..|+..+..+. ..+..
T Consensus 37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~-~~~~~ 109 (541)
T d1lcia_ 37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPAND-IYNER 109 (541)
T ss_dssp EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCT-TCCHH
T ss_pred EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCC-CCCHH
Confidence 344555554 357888887666554 34457899999998887532 334558888899998777654 67889
Q ss_pred HHHHHHHhcCccEEeechHHHHHHHhcccCCCCCCCCCcceEEecc
Q 009867 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCS 288 (523)
Q Consensus 243 ~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~l~~i~~~g 288 (523)
.+...++..+++.++.....+..+.+.... ++.++.+++..
T Consensus 110 ~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 150 (541)
T d1lcia_ 110 ELLNSMNISQPTVVFVSKKGLQKILNVQKK-----LPIIQKIIIMD 150 (541)
T ss_dssp HHHHHHHHHCCSEEEECGGGHHHHHHHHHH-----CTTCCEEEETT
T ss_pred HHHHHHHhccceEEeeeccccccchhcccc-----ccccceeeeec
Confidence 999999999999999999888777655332 24455555543
|