Citrus Sinensis ID: 009881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccHHccccccccccccccEEEcccccEEEEcccHHHHHHHHcccccEEEEEEcccEEEEcccccEEEccccHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHcccEEEcccccEEEEEccccccEEEEEEccccEEEEcEEEEccccccccccccccHHHHHHHccccccccccEEEEEEEEEcccccccccccEEEcccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccccccccccEEEcccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHccccccccccccccccccccccccHHHHcccccccEEEccccHHHHccccHHHEEEEccccEEEEEEEEcEEEEEEcccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHcccccHccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEccccccccccccEEEEEEEccccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccHHHcccccccEcEccccccccccEEEEEEEEHccccccccccccccccHHHHEEEEEEcccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprslfpeqvTSIRVLQlggnlavcpLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTgtagnsstaqsedmeeakPTLLWSALYIQDLSLVCFAsvfslpkvlFHSFKMYLYCGraldfyvfscpsffpfll
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGnsstaqsedmEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG******************TLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFL*
Disordered Region (DISOPRED)
****************PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA**LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLA**************LSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD******KLLHAALSALQKLLVTGTA*************AKPTLLWSALYIQDLSLV*****FSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG***************AKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Disordered Region (DISPRO)
*******SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNS*********************A*****QHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH*****SFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDFYVFSCPSFFPFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.573	0.587	0.340	9e-41
P32864	603	Rab proteins geranylgeran	yes	no	0.745	0.646	0.276	4e-32
Q9QZD5	621	Rab proteins geranylgeran	yes	no	0.669	0.563	0.295	6e-32
P24386	653	Rab proteins geranylgeran	yes	no	0.640	0.513	0.296	6e-32
O93831	640	Rab proteins geranylgeran	N/A	no	0.736	0.601	0.275	1e-31
Q9QXG2	665	Rab proteins geranylgeran	no	no	0.636	0.500	0.286	7e-31
Q10305	440	Probable secretory pathwa	yes	no	0.707	0.840	0.259	7e-31
P37727	650	Rab proteins geranylgeran	no	no	0.640	0.515	0.285	1e-29
P26374	656	Rab proteins geranylgeran	no	no	0.707	0.564	0.269	4e-29
P50396	447	Rab GDP dissociation inhi	no	no	0.600	0.702	0.270	2e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  168 bits (426), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 201/445 (45%), Gaps = 55/445 (12%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           P P   P   D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++
Sbjct: 38  PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
           N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++K
Sbjct: 98  NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150

Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
           S    YLEF+S+    T+  D   KL    +++  IF D++L LM K  LM+F K V   
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207

Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
                  E    I +   +   ++FL  K KL       ++++I +  YD  V     K 
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254

Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
            + + R+  Y +S   +     AL     G GEL Q FCR AAV G  Y L   ++S   
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311

Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
              + + K      G  + +S K+++ P+     S     QQ Q              V 
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354

Query: 367 RGICITRSS----LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFS 422
           R  CI  +          S  +V+FPP SL       ++   LG    +CP G  V Y S
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFILGAGSEICPEGTIVWYLS 414

Query: 423 ALCDEVNQGKKLLHAALSALQKLLV 447
              ++  + +  + AAL A++  L+
Sbjct: 415 T-TEQGPRAEMDIDAALEAMEMALL 438

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2

 Score =  139 bits (350), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 187/399 (46%), Gaps = 49/399 (12%)

Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
           + +  R FN+D VS P  L+     +DL++KS  S Y EFK++        + K+  VP 
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277

Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
           SRA +F  K L ++EK  LM+F      +    +  ++  + S       F+++L   KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330

Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
              ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382

Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
           E+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441

Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVT 398
               S+ Q  Q              ++R + IT +S LK D    + I     L P   T
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPPLEP-GTT 486

Query: 399 SIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQ 458
           S+RV++L  +   C    ++++ +  C      ++ L   +  L        AG      
Sbjct: 487 SVRVMELCSSTMTCMKDSYLVHLT--CSSSKTAREDLEPVVKQLFIPEAEAEAGKD---- 540

Query: 459 SEDMEEAKPTLLWSALY--IQDLSLVCFASVFSLPKVLF 495
               E  KP LLW ALY  ++D S V  +S   LP  ++
Sbjct: 541 ----ELRKPRLLW-ALYFNMRDSSGVSRSSYCGLPSNVY 574

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Mus musculus (taxid: 10090)

>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3

 Score =  139 bits (350), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        + ++  VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +    I+       F E+L   KL   ++ 
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
           IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S 
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
            Q  Q              ++R + IT RS LK D    + I    +  P    ++RV++
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTDSDQQISILTVPAEEP-GTFAVRVIE 491

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ +  C      ++ L    S +QKL V  T       Q E    
Sbjct: 492 LCSSTMTCMKGTYLVHLT--CTSSKTAREDLE---SVVQKLFVPYTEMEIENEQVE---- 542

Query: 465 AKPTLLWSALYIQ-----DLSLVCF 484
            KP +LW ALY       D+S  C+
Sbjct: 543 -KPRILW-ALYFNMRDSSDISRSCY 565

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Homo sapiens (taxid: 9606)

>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 212/439 (48%), Gaps = 54/439 (12%)

Query: 24  DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
           D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +   +NS     
Sbjct: 5   DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64

Query: 81  SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                  + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF
Sbjct: 65  -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116

Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
           +S+    + + D     V   ++  IF DKSL LM K    R+       L LD   +  
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172

Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
           V+      D+P   FL +  KL     + ++Y+I ++ Y ++ S     T+  + R+  +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223

Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
            SS   +      ++    G GEL Q FCR AAV G  Y L   +     IS +   N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282

Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
           S+  +         + K+++ P+  +P  L SS+ ++ E+ Q +        V R + + 
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325

Query: 373 RSSLKP----DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEV 428
           R   K     + S+ +V+FPP SL  +   S++V+   GN  VCP G  + + S +  ++
Sbjct: 326 RRDCKEWMSGNESSAIVVFPPHSLPTDNQHSVQVIIQNGNSGVCPDGQAIWFSSTVEQDL 385

Query: 429 NQGKKLLHAALSALQKLLV 447
           ++ K  L +A   ++  L+
Sbjct: 386 SRAKVDLESAFEKMETSLL 404

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Candida albicans (taxid: 5476)

>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 177/387 (45%), Gaps = 54/387 (13%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 237 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 294

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  +  EE   + F+E+L   KL   ++ 
Sbjct: 295 NSKQLTMVEKRMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQY 347

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 348 FVLHSIAM------TSETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 399

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+    + +  
Sbjct: 400 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGV 459

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTS--IRV 402
             +               +++R + IT  S LKPD    + I    ++  E+  S  +RV
Sbjct: 460 QYR---------------QISRAVLITDGSVLKPDSDQQVSIL---TVPAEESGSFAVRV 501

Query: 403 LQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462
           ++L  +   C  G ++++ + +       K         +QKL    T   +   Q E  
Sbjct: 502 IELCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE-- 554

Query: 463 EEAKPTLLWSALYIQ-----DLSLVCF 484
              KP +LW ALY       D+S  C+
Sbjct: 555 ---KPRILW-ALYFNMRDSSDISRDCY 577

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Mus musculus (taxid: 10090)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 198/432 (45%), Gaps = 62/432 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPD 379
             +   K ++ DPS+             +E  ++       G++ R ICI    +    +
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICILNHPIPNTDN 313

Query: 380 LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVNQGKK 433
           L +  +I P   +  ++   I +  +     VCP G ++   S + +      E+  G K
Sbjct: 314 LDSVQIIIPQNQV--KRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLK 371

Query: 434 LLHAALSALQKL 445
           LL   + +  ++
Sbjct: 372 LLGPVVESFSRV 383

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 172/385 (44%), Gaps = 50/385 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-QLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P     +RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIE 488

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539

Query: 465 AKPTLLWSALYIQ-----DLSLVCF 484
            KP LLW ALY       D+S  C+
Sbjct: 540 -KPRLLW-ALYFNMRDSSDISRDCY 562

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Rattus norvegicus (taxid: 10116)

>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 196/426 (46%), Gaps = 56/426 (13%)

Query: 75  SHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
           S ST      +P+ + +  S      + +  R FN+D+   ++L+     +DL++KS  S
Sbjct: 201 SKSTVEDKADEPIRNRITYSQ-----IVKEGRRFNIDLVS-KLLYSQGLLIDLLIKSDVS 254

Query: 135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
            Y+EFK++        + K+  VP SRA +F  K L ++EK  LM+F      +    + 
Sbjct: 255 RYVEFKNVTRILAF-REGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQHPDE 313

Query: 195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
            +   + S       F+E+L   KL   ++  VL++IAM       SE    T DG+N  
Sbjct: 314 YQAFRQCS-------FSEYLKTKKLTPNLQHFVLHSIAM------TSESSCTTIDGLNAT 360

Query: 255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
             +   +GRF N     ++P+YGQGE+PQ FCR  AV G +Y LR  V   + D+ SG  
Sbjct: 361 KNFLQCLGRFGNT--PFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRC 418

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT-R 373
           K +    GQ I +   +++ S+    + ++   +               +++R + IT +
Sbjct: 419 KAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYK---------------QISRAVLITDQ 463

Query: 374 SSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQG 431
           S LK DL     ++I PP         ++RV +L  +   C    ++++ +  C      
Sbjct: 464 SILKTDLDQQTSILIVPPAE---PGACAVRVTELCSSTMTCMKDTYLVHLT--CSSSKTA 518

Query: 432 KKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALY--IQDLSLVCFASVFS 489
           ++ L    S ++KL    T       +  + E  KP LLW ALY  ++D S +  +S   
Sbjct: 519 REDLE---SVVKKLFTPYTE-----TEINEEELTKPRLLW-ALYFNMRDSSGISRSSYNG 569

Query: 490 LPKVLF 495
           LP  ++
Sbjct: 570 LPSNVY 575

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Homo sapiens (taxid: 9606)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.912	0.857	0.646	1e-178
224113201	553	predicted protein [Populus trichocarpa]	0.906	0.857	0.636	1e-176
255561411	551	protein with unknown function [Ricinus c	0.904	0.858	0.624	1e-166
147798203	812	hypothetical protein VITISV_019372 [Viti	0.902	0.581	0.569	1e-165
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.902	0.853	0.599	1e-159
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.902	0.856	0.591	1e-159
357484143	552	Rab proteins geranylgeranyltransferase c	0.900	0.853	0.574	1e-158
388517443	552	unknown [Medicago truncatula]	0.900	0.853	0.572	1e-158
449456881	543	PREDICTED: rab proteins geranylgeranyltr	0.898	0.865	0.579	1e-157
20453227	563	AT3g06540/F5E6_13 [Arabidopsis thaliana]	0.915	0.850	0.574	1e-154

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/504 (64%), Positives = 389/504 (77%), Gaps = 27/504 (5%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +IR +Q+
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQI 422

Query: 406 GGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEA 465
           G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  SE+MEE 
Sbjct: 423 GSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHSENMEEV 482

Query: 466 KPTLLWSALYIQDLSLVCFASVFS 489
           KPTLLWSALY Q+L +  F S+ S
Sbjct: 483 KPTLLWSALYTQELVMGSFESISS 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/498 (63%), Positives = 388/498 (77%), Gaps = 24/498 (4%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  L---------NSHSTPSSVCPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L          S ++ ++  PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNL 409
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPRSL+PEQ+TSIR LQ+ GNL
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNL 424

Query: 410 AVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTL 469
           AVCPLGMFVLY SALCD+  QGK+LL+AA++AL        + +SST QSE  EE KP++
Sbjct: 425 AVCPLGMFVLYLSALCDDAIQGKRLLNAAMNALLTFPDPVNSESSSTVQSETTEE-KPSV 483

Query: 470 LWSALYIQDLSLVCFASV 487
           +WS LY+Q++S   F S+
Sbjct: 484 IWSGLYMQEMSTGQFDSI 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/501 (62%), Positives = 388/501 (77%), Gaps = 28/501 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN 408
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPRSL+PEQ TSIR LQ+GG+
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSLYPEQSTSIRALQMGGS 421

Query: 409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT 468
           LAVCP  MF+LY SALCD+V+QGKKLL+ A++AL     +    + ST Q+E+  E +  
Sbjct: 422 LAVCPTNMFILYLSALCDDVHQGKKLLNTAMNALLSSTDSENPESCSTGQTENT-EVQSM 480

Query: 469 LLWSALYIQDLSLVCFASVFS 489
           LLWSALYIQ+L+   F S+ S
Sbjct: 481 LLWSALYIQELTTGQFDSISS 501

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/565 (56%), Positives = 386/565 (68%), Gaps = 93/565 (16%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMA 482

Query: 400 IRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459
           IR +Q+G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  S
Sbjct: 483 IRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHS 542

Query: 460 EDMEEAKPTLLWSALYIQDLSLVCF 484
           E+MEE KPTLLWSALY Q+L ++ +
Sbjct: 543 ENMEEVKPTLLWSALYTQELVMLWW 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/499 (59%), Positives = 371/499 (74%), Gaps = 27/499 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPRSL+PEQVTSI+ LQ+G NLAVC
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVC 425

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P G F+LY S LC++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWS
Sbjct: 426 PAGTFILYLSTLCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWS 484

Query: 473 ALYIQDLSLVCFASVFSLP 491
           A YIQ L +  F  + S P
Sbjct: 485 AFYIQKLIMSKFEFISSTP 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/497 (59%), Positives = 372/497 (74%), Gaps = 25/497 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                D KG VARGICITRSS+KPD+SN  V++PPRSL+PEQ+TSI+ LQ+G NLAVCP 
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPA 425

Query: 415 GMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSAL 474
           G F+LYFS +C++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWSA 
Sbjct: 426 GTFILYFSTMCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWSAF 484

Query: 475 YIQDLSLVCFASVFSLP 491
           YIQ L +     + S P
Sbjct: 485 YIQKLIMCKLEFISSTP 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/501 (57%), Positives = 366/501 (73%), Gaps = 30/501 (5%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLSLVCFASVFSLP 491
           WSA YIQ L+   F ++ S P
Sbjct: 482 WSAFYIQKLTSSKFEAISSTP 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517443|gb|AFK46783.1| unknown [Medicago truncatula]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/501 (57%), Positives = 365/501 (72%), Gaps = 30/501 (5%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK ID + + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDVSLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLSLVCFASVFSLP 491
           WSA YIQ L+   F ++ S P
Sbjct: 482 WSAFYIQKLTSSKFEAISSTP 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456881|ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Cucumis sativus]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/499 (57%), Positives = 369/499 (73%), Gaps = 29/499 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           +P I+P+ FDLIV+GTGLP+S+++AAASASGK+VLHLDPNP+YG HF++L + DLT FLN
Sbjct: 7   HPLIDPSTFDLIVVGTGLPQSILAAAASASGKTVLHLDPNPYYGGHFATLPLHDLTSFLN 66

Query: 75  SHSTPSSVCPDP-------------------LYSDVEISNYASRLLSQHPRNFNLDVSGP 115
           S S P  + P P                   LYSDVEIS+YA  +L +H R FN+D++GP
Sbjct: 67  SASAP--LLPSPPLASYDNQDYVSVDLQTRSLYSDVEISSYAPEVLQEHARKFNIDLAGP 124

Query: 116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
           RVLFCAD  +D +LK G + YLEFKSIDA+++ D + KL +VP SRAAIFKDKSL L EK
Sbjct: 125 RVLFCADKCIDAVLKVGVNQYLEFKSIDASYLWDQNGKLVNVPGSRAAIFKDKSLSLTEK 184

Query: 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
           NQLMRFFKLVQ HL   E  E++ +IS+EDLD+PF++FL K++LP K+KSI+LYAI+MAD
Sbjct: 185 NQLMRFFKLVQKHLDPAEDGESS-KISQEDLDTPFSDFLNKLRLPQKMKSIILYAISMAD 243

Query: 236 YDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK 292
            DQ   ++ +  L T++GI RLALY++SIGRFQNA GAL+YPIYGQGEL QAFCRRAAVK
Sbjct: 244 SDQNDNDIGQNRLLTKEGIARLALYHTSIGRFQNAQGALLYPIYGQGELSQAFCRRAAVK 303

Query: 293 GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES 352
           GCLYVLRMPV++LL D+++  YKGVRLASGQDI S +LVLDP F VP     S     ES
Sbjct: 304 GCLYVLRMPVVALLKDKSNEQYKGVRLASGQDIFSQQLVLDPCFIVPQLFKLSL----ES 359

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D   KVARGICIT+ S+  D+ N L+++PP++LFPEQV+S+RVLQ+GGNLAVC
Sbjct: 360 LQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLFPEQVSSVRVLQIGGNLAVC 419

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P  MFV+Y S LCD  NQGK+++ AA++++  L V+    +SS  Q  + E     LLWS
Sbjct: 420 PEDMFVIYISTLCDSANQGKEMVRAAMNSITLLFVSDCPDSSSVDQDTNAEGKDLDLLWS 479

Query: 473 ALYIQDLSLVCFASVFSLP 491
           ALY+Q+ S+  F +V   P
Sbjct: 480 ALYVQESSVGQFGTVSFTP 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453227|gb|AAM19852.1| AT3g06540/F5E6_13 [Arabidopsis thaliana] gi|23463085|gb|AAN33212.1| At3g06540/F5E6_13 [Arabidopsis thaliana]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/508 (57%), Positives = 376/508 (74%), Gaps = 29/508 (5%)

Query: 10  LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL 69
           + +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DL
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 70  THFLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFN 109
           T FL+S+S                        +    LYS VEIS++ S +L +H R FN
Sbjct: 62  TSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFN 121

Query: 110 LDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKS 169
           +D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKS
Sbjct: 122 VDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKS 181

Query: 170 LGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIV 227
           L L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+
Sbjct: 182 LTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSII 241

Query: 228 LYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQA 284
           LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQA
Sbjct: 242 LYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQA 301

Query: 285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLA 343
           FCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+
Sbjct: 302 FCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLS 361

Query: 344 SSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR 401
           S   Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IR
Sbjct: 362 SLTDQQNETLNVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIR 421

Query: 402 VLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSED 461
           VLQLG  LAVCP  M VLY S LCD  +QG K L +A+S L  L V     + S  ++ D
Sbjct: 422 VLQLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSAMSNLISLPVPENRQSDSVVEN-D 480

Query: 462 MEEAKPTLLWSALYIQDLSLVCFASVFS 489
             E KP LLW ALY+Q+L    F    S
Sbjct: 481 TSETKPILLWRALYVQELVKGEFGGTIS 508

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.772	0.717	0.594	1.3e-145
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.567	0.581	0.337	1.6e-38
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.525	0.421	0.298	1.3e-36
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.518	0.436	0.301	6.5e-36
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.523	0.420	0.307	1.2e-35
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.527	0.415	0.295	2.7e-35
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.527	0.422	0.280	2.2e-34
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.609	0.482	0.275	2.4e-34
UNIPROTKB|F1NEX6	656	CHM "Uncharacterized protein"	0.390	0.310	0.328	2.7e-34
RGD|2340	650	Chm "choroideremia (Rab escort	0.529	0.426	0.290	2.5e-33

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 246/414 (59%), Positives = 317/414 (76%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
             ++SN LV++PP+SLFPEQ+T+IRVLQLG  LAVCP  M VLY S LCD  +QG K L +A
Sbjct:   399 NVSNALVVYPPKSLFPEQLTAIRVLQLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSA 458

Query:   439 LSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFA-SVFSLP 491
             +S L  L V     + S  ++ D  E KP LLW ALY+Q+L    F  ++ S+P
Sbjct:   459 MSNLISLPVPENRQSDSVVEN-DTSETKPILLWRALYVQELVKGEFGGTISSMP 511

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 92/308 (29%), Positives = 149/308 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q     
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQ----- 451

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT RS LK D    + I    +  P    ++RV++L  +   C  
Sbjct:   452 ---------ISRAVLITDRSVLKTDSDQQISILTVPAEEPGTF-AVRVIELCSSTMTCMK 501

Query:   415 GMFVLYFS 422
             G ++++ +
Sbjct:   502 GTYLVHLT 509

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
 Identities = 93/308 (30%), Positives = 154/308 (50%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q       
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQ------- 452

Query:   358 LSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                    ++R + IT +S LK D      +++ PP  L P   TS+RV++L  +   C  
Sbjct:   453 -------ISRAVLITDQSILKTDSDQQISILVVPP--LEPG-TTSVRVMELCSSTMTCMK 502

Query:   415 GMFVLYFS 422
               ++++ +
Sbjct:   503 DSYLVHLT 510

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 95/309 (30%), Positives = 148/309 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++   
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQ--- 450

Query:   355 AFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP 413
                       ++R + IT RS LK D    + I       P    ++RV++L  +   C 
Sbjct:   451 ----------ISRSVLITDRSVLKTDSDQQISILTVPGEEPGTF-AVRVIELCSSTMTCM 499

Query:   414 LGMFVLYFS 422
              G ++++ +
Sbjct:   500 KGTYLVHLT 508

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
 Identities = 92/311 (29%), Positives = 150/311 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+ +  +  S  Q  Q     
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY-LSENTCSGVQYRQ----- 463

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT-SIRVLQLGGNLAVCP 413
                      ++R + IT  S LKPD    + I    +   E  + ++RV++L  +   C 
Sbjct:   464 ---------ISRAVLITDGSVLKPDSDQQVSILTVPA--EESGSFAVRVIELCSSTMTCM 512

Query:   414 LGMFVLYFSAL 424
              G ++++ + +
Sbjct:   513 KGTYLVHLTCM 523

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
 Identities = 86/307 (28%), Positives = 147/307 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+    +   S  Q ++  +A
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSYFSENTC--SRVQYRQISRA 455

Query:   356 FSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
               ++D          + +S+    +S   V       F     ++RV++L  +   C  G
Sbjct:   456 VLVTDKS--------VLKSNSDQQISILTVPADEPGAF-----AVRVIELCSSTMTCMKG 502

Query:   416 MFVLYFS 422
              ++++ +
Sbjct:   503 TYLVHLT 509

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 321 (118.1 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 95/345 (27%), Positives = 169/345 (48%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS 381
             GQ I +   +  P +    +++SS   L            +   +R I I  S +    +
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL-----ILPQKTIRKTYSRFIGIIESKIIGTQN 445

Query:   382 NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
             +  +  PP+S+   +   I +LQL            +++F+ L D
Sbjct:   446 DSFITIPPKSIGNNK-NVINILQLSSICVPYNKNKALIHFTTLAD 489

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|F1NEX6 CHM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
 Identities = 73/222 (32%), Positives = 119/222 (53%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLCSVPDSRAAIFKDKSLGLME 174
             ++L+     ++L++KS  S Y EFK+  AT +L   + K+  VP SRA +F  + L ++E
Sbjct:   230 KLLYSRGLLIELLIKSNVSRYAEFKN--ATRILAFREGKVEQVPCSRADVFNSRQLAMVE 287

Query:   175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMA 234
             K  LM+F       L  ++  +      ++  +S FA+FL   KL   ++  +L++IAM 
Sbjct:   288 KRMLMKFLTFC---LEYEQHPDEY----QDYKNSTFAQFLKTRKLTPSLQHFILHSIAM- 339

Query:   235 DYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGC 294
                  VSE    T +G+     +   +GR+ N     ++P+YGQGE+PQ FCR  AV G 
Sbjct:   340 -----VSEKDCNTLEGLQATRKFLQCLGRYGNT--PFLFPLYGQGEIPQCFCRMCAVFGG 392

Query:   295 LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             +Y LR  V  L+ D+ SG  K V    GQ I ++  +++ S+
Sbjct:   393 IYCLRHSVQCLVVDKESGRCKAVVDHFGQRISANYFIVEDSY 434

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|2340 Chm "choroideremia (Rab escort protein 1)" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
 Identities = 90/310 (29%), Positives = 146/310 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   231 QLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  R  E    + F+E+L   KL   ++  VL++IAM  
Sbjct:   290 RMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQYFVLHSIAMT- 341

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   342 -----SETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    +   S  Q ++    
Sbjct:   395 YCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC--SRVQYRQ---- 448

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT  S LK D    + I    +  P     +RV++L  +   C  
Sbjct:   449 ---------ISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIELCSSTMTCMK 498

Query:   415 GMFVLYFSAL 424
             G ++++ + +
Sbjct:   499 GTYLVHLTCM 508

GO:0001568 "blood vessel development" evidence=IEA;ISO

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.256.25.1 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	523
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	2e-55
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	3e-52
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	2e-50

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  191 bits (488), Expect = 2e-55
 Identities = 120/473 (25%), Positives = 195/473 (41%), Gaps = 75/473 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377
             SG ++   K V+ DPS+  P  +                    G+V R ICI    + 
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICILSHPIP 310

Query: 378 --PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVN 429
              D  +  +I P   +  +  + I +        VCP G ++   S   +      E+ 
Sbjct: 311 NTNDAGSVQIIIPQNQVGRK--SDIYISCCSYAHNVCPKGKYIAIVSTTVETENPESELA 368

Query: 430 QGKKLLHA------ALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYI 476
            G  LL         +S L +    G+      +QS D      T     L I
Sbjct: 369 PGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDVLDI 421

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  183 bits (465), Expect = 3e-52
 Identities = 116/418 (27%), Positives = 180/418 (43%), Gaps = 62/418 (14%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVN 429
              P    L +  +IFPP SL  ++   I+V  LG    VCP G ++ Y S + +   
Sbjct: 306 HPVPFTTGLDSLQIIFPPFSL--KRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPT 361

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  178 bits (454), Expect = 2e-50
 Identities = 118/429 (27%), Positives = 196/429 (45%), Gaps = 59/429 (13%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G+      ++ DPS+  P  +                    GKV R ICI    + P+ 
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICILNHPI-PNT 313

Query: 381 SN---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
           +N     +I P + L   +   I ++ +  N  VCP G ++   S    E N  +K +  
Sbjct: 314 NNANSCQIIIPQKQL--GRKNDIYIMLVSSNHGVCPKGKYIAIISTTV-ETNNPEKEIEP 370

Query: 438 ALSALQKLL 446
           AL  L  + 
Sbjct: 371 ALKLLGPIE 379

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.94
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.94
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.92
PRK07233	434	hypothetical protein; Provisional	99.91
PLN02576	496	protoporphyrinogen oxidase	99.91
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.9
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.89
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.89
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.89
PRK07208	479	hypothetical protein; Provisional	99.89
PLN02612	567	phytoene desaturase	99.88
PLN02487	569	zeta-carotene desaturase	99.85
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.84
PLN02268	435	probable polyamine oxidase	99.8
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.79
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.79
PLN02676	487	polyamine oxidase	99.78
PLN02529	738	lysine-specific histone demethylase 1	99.77
PLN02568	539	polyamine oxidase	99.74
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.74
PLN03000	881	amine oxidase	99.71
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.71
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.67
PLN02976	1713	amine oxidase	99.59
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.57
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.57
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.54
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.5
COG3349	485	Uncharacterized conserved protein [Function unknow	99.3
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.26
COG2081	408	Predicted flavoproteins [General function predicti	99.19
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.19
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.17
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.15
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.01
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.97
COG0579	429	Predicted dehydrogenase [General function predicti	98.91
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.91
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.9
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.85
PRK08274	466	tricarballylate dehydrogenase; Validated	98.8
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.77
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.76
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.72
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.69
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.66
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.64
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.63
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.6
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.58
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.51
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.5
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.47
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.44
PRK10157	428	putative oxidoreductase FixC; Provisional	98.42
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.41
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.4
PRK10015	429	oxidoreductase; Provisional	98.39
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.38
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.32
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.32
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.3
PRK07121	492	hypothetical protein; Validated	98.29
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.27
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.26
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.26
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.26
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.26
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.24
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.23
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.23
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.23
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.22
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.21
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.2
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.2
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.19
PRK06116	450	glutathione reductase; Validated	98.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.17
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.16
PTZ00058	561	glutathione reductase; Provisional	98.16
PRK06370	463	mercuric reductase; Validated	98.16
PRK08013	400	oxidoreductase; Provisional	98.15
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.15
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.14
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.13
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.13
PRK09126	392	hypothetical protein; Provisional	98.13
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.12
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.12
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.11
PLN02463	447	lycopene beta cyclase	98.11
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.11
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.1
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.09
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.09
PRK07045	388	putative monooxygenase; Reviewed	98.09
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.09
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.09
PRK14694	468	putative mercuric reductase; Provisional	98.09
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.08
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.08
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.07
PRK13748	561	putative mercuric reductase; Provisional	98.07
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.06
PLN02661	357	Putative thiazole synthesis	98.06
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.05
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.05
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.05
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.04
PLN02697	529	lycopene epsilon cyclase	98.04
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.04
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.04
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.04
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.04
PRK08163	396	salicylate hydroxylase; Provisional	98.03
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.03
PRK07236	386	hypothetical protein; Provisional	98.03
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.02
PRK06184	502	hypothetical protein; Provisional	98.02
PLN02985	514	squalene monooxygenase	98.01
PRK12831	464	putative oxidoreductase; Provisional	98.01
PRK06185	407	hypothetical protein; Provisional	98.0
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.0
PRK14727	479	putative mercuric reductase; Provisional	97.99
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.99
TIGR02053	463	MerA mercuric reductase. This model represents the	97.99
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.99
COG3573	552	Predicted oxidoreductase [General function predict	97.99
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.99
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.98
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.98
PRK06834	488	hypothetical protein; Provisional	97.97
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.97
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.97
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.97
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.96
PRK07190	487	hypothetical protein; Provisional	97.96
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.95
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.95
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.94
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.94
PTZ00367	567	squalene epoxidase; Provisional	97.93
PTZ00052	499	thioredoxin reductase; Provisional	97.93
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.92
PRK06847	375	hypothetical protein; Provisional	97.92
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.92
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.92
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.92
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.91
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.91
PRK06753	373	hypothetical protein; Provisional	97.91
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.9
PRK06126	545	hypothetical protein; Provisional	97.9
PLN02507	499	glutathione reductase	97.9
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.9
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.88
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.88
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.88
PRK12839	572	hypothetical protein; Provisional	97.88
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.88
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.87
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.87
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.86
PRK07538	413	hypothetical protein; Provisional	97.86
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.86
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.85
PRK08244	493	hypothetical protein; Provisional	97.85
PRK07804	541	L-aspartate oxidase; Provisional	97.85
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.85
PRK11445	351	putative oxidoreductase; Provisional	97.84
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.84
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.84
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.83
PRK05257	494	malate:quinone oxidoreductase; Validated	97.83
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.83
PLN02546	558	glutathione reductase	97.81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.81
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.81
PRK02106	560	choline dehydrogenase; Validated	97.8
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.8
PRK07588	391	hypothetical protein; Provisional	97.8
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.8
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.79
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.79
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.78
PRK06175	433	L-aspartate oxidase; Provisional	97.78
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.78
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.78
PRK07395	553	L-aspartate oxidase; Provisional	97.77
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.77
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.74
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.74
PRK05868	372	hypothetical protein; Validated	97.74
KOG2853	509	consensus Possible oxidoreductase [General functio	97.74
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.73
PLN02815	594	L-aspartate oxidase	97.73
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.73
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.72
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.72
PRK06475	400	salicylate hydroxylase; Provisional	97.71
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.71
PRK10262	321	thioredoxin reductase; Provisional	97.71
PLN02852	491	ferredoxin-NADP+ reductase	97.7
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.7
PRK06996	398	hypothetical protein; Provisional	97.7
PRK08294	634	phenol 2-monooxygenase; Provisional	97.69
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.68
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.68
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.67
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.66
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.66
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.66
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.65
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.64
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.64
PRK08071	510	L-aspartate oxidase; Provisional	97.63
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.62
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.61
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.59
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.58
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.58
PRK08275	554	putative oxidoreductase; Provisional	97.58
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.57
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.56
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.55
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.55
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.53
PRK08401	466	L-aspartate oxidase; Provisional	97.53
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.52
PRK09077	536	L-aspartate oxidase; Provisional	97.52
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.49
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.47
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.47
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.46
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.42
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.38
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.38
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.37
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.37
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.36
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.36
PRK07846	451	mycothione reductase; Reviewed	97.35
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.35
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.33
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.33
PRK07512	513	L-aspartate oxidase; Provisional	97.32
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.28
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.26
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.26
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.24
PRK13984	604	putative oxidoreductase; Provisional	97.24
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.23
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.22
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.21
PTZ00188	506	adrenodoxin reductase; Provisional	97.19
PLN02785	587	Protein HOTHEAD	97.17
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.13
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.94
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.8
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.68
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.66
PRK09897	534	hypothetical protein; Provisional	96.58
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.56
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.47
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.42
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.39
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.37
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.37
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.29
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.11
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.95
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.9
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.87
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.85
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.74
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.55
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.53
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.33
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.16
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.93
KOG2852	380	consensus Possible oxidoreductase [General functio	94.81
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.73
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	94.69
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.55
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	94.2
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.05
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.05
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.99
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.94
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	93.87
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.82
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.81
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	93.79
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.6
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.52
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.46
TIGR02053	463	MerA mercuric reductase. This model represents the	93.06
PRK06370	463	mercuric reductase; Validated	93.01
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.95
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.9
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.88
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.86
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.82
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.78
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.78
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.75
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.66
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	92.66
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.57
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	92.57
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	92.54
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.54
PRK07846	451	mycothione reductase; Reviewed	92.54
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.54
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	92.54
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.48
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	92.4
PRK04148	134	hypothetical protein; Provisional	92.39
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.34
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.3
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.25
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.24
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	91.87
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	91.84
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.79
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.72
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.7
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	91.7
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.68
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.67
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.66
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.65
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.62
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.39
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.36
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.16
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.07
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.96
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.85
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	90.84
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	90.81
PRK10262	321	thioredoxin reductase; Provisional	90.74
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.73
PRK05257	494	malate:quinone oxidoreductase; Validated	90.7
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.69
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.68
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	90.67
PTZ00058	561	glutathione reductase; Provisional	90.57
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.55
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.54
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.42
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	90.33
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.33
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	90.32
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	90.22
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.19
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	90.12
PLN02507	499	glutathione reductase	90.08
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	90.06
PRK06116	450	glutathione reductase; Validated	89.92
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	89.76
PRK07417	279	arogenate dehydrogenase; Reviewed	89.76
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.57
PRK12831	464	putative oxidoreductase; Provisional	89.57
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.51
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.5
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	89.42
PRK13748	561	putative mercuric reductase; Provisional	89.39
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.15
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	89.14
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.12
PLN02546	558	glutathione reductase	89.08
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	88.99
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	88.97
PRK14694	468	putative mercuric reductase; Provisional	88.96
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.9
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.79
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	88.76
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	88.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.59
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	88.55
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.52
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.36
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	88.25
PRK14727	479	putative mercuric reductase; Provisional	88.24
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.05
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	88.03
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.95
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.92
PLN02695	370	GDP-D-mannose-3',5'-epimerase	87.86
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	87.82
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	87.73
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.68
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	87.5
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	87.46
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	87.44
PRK07121	492	hypothetical protein; Validated	87.43
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	87.37
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.32
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	87.29
PTZ00052	499	thioredoxin reductase; Provisional	87.27
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	87.14
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	87.1
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	86.98
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.96
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	86.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	86.71
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.67
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.59
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	86.39
PRK13339	497	malate:quinone oxidoreductase; Reviewed	86.36
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	86.36
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.36
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	86.33
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	86.18
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.17
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	86.09
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	86.04
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.95
PRK06223	307	malate dehydrogenase; Reviewed	85.86
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.56
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	85.56
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	85.53
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	85.42
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	85.38
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.06
PRK10157	428	putative oxidoreductase FixC; Provisional	84.97
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	84.96
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	84.93
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	84.83
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	84.55
PLN02256	304	arogenate dehydrogenase	84.55
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	84.53
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	84.49
PRK07831	262	short chain dehydrogenase; Provisional	84.44
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	84.29
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	84.27
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	84.26
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	84.25
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.79
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	83.76
PRK06175	433	L-aspartate oxidase; Provisional	83.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	83.45
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	83.44
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.43
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	83.43
PLN02572	442	UDP-sulfoquinovose synthase	83.23
PRK08306	296	dipicolinate synthase subunit A; Reviewed	83.2
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	83.18
PLN02712	667	arogenate dehydrogenase	83.09
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	83.08
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	83.07
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	83.02
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	83.02
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.81
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.79
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	82.79
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	82.73
PTZ00082	321	L-lactate dehydrogenase; Provisional	82.58
PRK09496	453	trkA potassium transporter peripheral membrane com	82.43
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	82.36
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	82.25
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	82.16
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	82.14
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.93
PRK06847	375	hypothetical protein; Provisional	81.9
PLN02464	627	glycerol-3-phosphate dehydrogenase	81.85
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	81.82
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	81.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	81.58
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	81.58
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	81.52
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	81.43
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	81.35
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	81.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	81.24
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	81.15
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	81.07
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	81.0

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-72  Score=551.23  Aligned_cols=436  Identities=34%  Similarity=0.576  Sum_probs=346.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc--------chhhhhc---cCCCCCC------
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPSS------   81 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~--------~~~~~~~---~~~~~~~------   81 (523)
                      .|++|||||||||+.++++|++.+|+|.+|||||+|+||||.|++|++.        .+.+..+   +..+++.      
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            5688999999999999999999999999999999999999999999987        3322321   1111110      


Q ss_pred             ----CCCCCccccceecc---------------ccccccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccc
Q 009881           82 ----VCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (523)
Q Consensus        82 ----~~~~~~~~~~~~~~---------------~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~  142 (523)
                          ......+.+++...               .+...+.+..|+|+|||. |+++|++|.++++|+++++.+|.||+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence                01122333333320               011122346899999999 9999999999999999999999999999


Q ss_pred             cceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh
Q 009881          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (523)
Q Consensus       143 ~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~  222 (523)
                      ++.+..+ +|++.+|||+|+|+|+++.|++.|||+||||+++|.+|..+.     ..+...+..+.||.|||++++++++
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9988775 889999999999999999999999999999999999985321     1122345677899999999999999


Q ss_pred             HHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCce
Q 009881          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (523)
Q Consensus       223 l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V  302 (523)
                      ++.+++|+|+|..+++      .++.+|+.+.+.|+.|+||||+++  |+||.||.|||+|+|||+|||+||.|+|+++|
T Consensus       238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            9999999999976543      478999999999999999999876  99999999999999999999999999999999


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCc
Q 009881          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN  382 (523)
Q Consensus       303 ~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~  382 (523)
                      +.|..|++.+++..+..+.|+++.|+++|+.|.+. |... ...             ....+++|+++|+++++......
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence            99999865554444444789999999999999987 4321 211             12347999999999998654322


Q ss_pred             ---eEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009881          383 ---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS  459 (523)
Q Consensus       383 ---~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  459 (523)
                         .++..++.. +  ....+++++.+++++.||+|.|++|+|  +..+..+.++++..+.+++..            +.
T Consensus       375 q~~~ll~~~~~e-p--g~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~  437 (547)
T KOG4405|consen  375 QQLSLLSLLAVE-P--GAMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI  437 (547)
T ss_pred             hhhhhhhccccC-c--chhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence               233444332 1  245688999999999999999999998  444458899999999999962            11


Q ss_pred             cccccCCcceEEEEEEEeecccccccccccCChhhhcccceEeeeccCcee
Q 009881          460 EDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMYLYCGRALDF  510 (523)
Q Consensus       460 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (523)
                      .+ |..||++||++||++++.+..+.+  .+|.+|      |.|.||+...
T Consensus       438 ~~-E~~kp~llw~~yf~~~~~s~~s~s--~~~~nv------yv~~~pD~nL  479 (547)
T KOG4405|consen  438 KN-ETSKPRLLWALYFTMRDSSVISRS--PLAENV------YVCPPPDCNL  479 (547)
T ss_pred             cc-ccccceehHHHHhhHHhhcccccC--CCCCce------EECCCCCCCc
Confidence            11 336899999999999987765544  899999      9999998653

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=6.5e-70  Score=563.34  Aligned_cols=372  Identities=35%  Similarity=0.647  Sum_probs=289.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      ++++|||||+|||+.++++|++||++|++|||+|+|++|||.+++++++++.+|+......                 ..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~   63 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP   63 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence            4678999999999999999999999999999999999999999999999998898654210                 00


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                      ..+ ...|+|+|||. |++++++|+|+++|+++++.||+||+.++++|++. +|++++||++++|+|+++.+++.+||+|
T Consensus        64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            112 35799999998 99999999999999999999999999999999886 8999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      ||||+++.++.+..+...   + ..+....||.+++++|++++++++++.|+++|...+..   -..++.+++.++++|+
T Consensus       141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence            999999998854322110   1 11344689999999999999999999999998643221   1135789999999999


Q ss_pred             HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009881          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (523)
Q Consensus       259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~  338 (523)
                      .|+|+||++  +|+||+||.|||+|+|||+||++||+|+||++|++|..++ +|++++|. ++|++++|++||++|+|. 
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~-  288 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL-  288 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence            999999986  4999999999999999999999999999999999999974 68899997 499999999999999876 


Q ss_pred             CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC--CceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (523)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~  416 (523)
                      |+-                 ....++++|+|+|+++|+++..  ....+++|+.+.+  ..++||++++|+++++||+|+
T Consensus       289 p~~-----------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~  349 (438)
T PF00996_consen  289 PEK-----------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ  349 (438)
T ss_dssp             GCG-----------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred             ccc-----------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence            321                 0124689999999999998643  3456779987654  356799999999999999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHH
Q 009881          417 FVLYFSALCDEVNQGKKLLHAALSAL  442 (523)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l  442 (523)
                      ||+|+||..++ ++++++|+++++.|
T Consensus       350 yi~~~St~~~t-~~p~~eL~~~l~lL  374 (438)
T PF00996_consen  350 YIAYVSTTVET-SNPEEELEPALELL  374 (438)
T ss_dssp             EEEEEEEEE-S-S-HHHHTHHHHHTT
T ss_pred             EEEEEEeccCC-CCcHHHHHHHHHhh
Confidence            99999998765 58999999999844

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=1.9e-63  Score=522.01  Aligned_cols=375  Identities=29%  Similarity=0.527  Sum_probs=315.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      ++.+|||||||||++||++|++|+++|++|+|+|+|++|||+++|++++++..|+......                  .
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~------------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP------------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCC------------------c
Confidence            3567999999999999999999999999999999999999999999998865555332110                  0


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                      +.+ ...|.|++||. |++++++|.++++|+++++.+|+||+.+++.|++..+|+++++|+++.++|+++.+++.+||++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            112 24689999996 9999999999999999999999999999999987448999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      |||++++.++....+...   + ..++...|+.+|++++++++.+++++.+++++...+ +.  .+.++.+++.++++|+
T Consensus       141 ~kfl~~v~~~~~~~~~~~---~-~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~  213 (443)
T PTZ00363        141 KNFLQYVSNYDENDPETH---K-GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM  213 (443)
T ss_pred             HHHHHHHHhhccCChhhh---c-ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence            999999987754221110   0 011335899999999999999999998888775211 00  1135778899999999


Q ss_pred             HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009881          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (523)
Q Consensus       259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~  338 (523)
                      .|+++||.+  +++||+||+++|+|+|||.++++||+|+|+++|++|..++ ++++++|++++|++++|++||++|++. 
T Consensus       214 ~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~~-  289 (443)
T PTZ00363        214 DSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSYF-  289 (443)
T ss_pred             HHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECcccc-
Confidence            999999964  4889999999999999999999999999999999998873 578889999999999999999999876 


Q ss_pred             CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (523)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~  416 (523)
                      |...                 ...++|+|+|||+++|+...  .+..+++||+.+++.  .+.||++++|+++++||+|+
T Consensus       290 p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~  350 (443)
T PTZ00363        290 PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK  350 (443)
T ss_pred             cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence            3210                 13678999999999999653  245689999988753  56799999999999999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHHh
Q 009881          417 FVLYFSALCDEVNQGKKLLHAALSALQK  444 (523)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~~  444 (523)
                      ||+|+||.+++ .+++++|+++++.|+.
T Consensus       351 ~i~~~st~~~t-~~~~~~l~~~~~~l~~  377 (443)
T PTZ00363        351 YIAIISTTVET-NNPEKEIEPALKLLGP  377 (443)
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence            99999998876 5999999999999995

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-55  Score=433.92  Aligned_cols=370  Identities=31%  Similarity=0.538  Sum_probs=308.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      +.+|||||+|||+.+++.+++||++|++|+|+|+|++|||-.+|+++.++..|+.......                 .+
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~   64 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE   64 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence            3459999999999999999999999999999999999999999999988888887542110                 01


Q ss_pred             ccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~  179 (523)
                      . ....|.|++||. |+++++.++++.+|++.++.+|++|+.+...|+|. +|++++||.++.++|+++.+++.+||++|
T Consensus        65 ~-~~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~  141 (440)
T KOG1439|consen   65 K-LGRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM  141 (440)
T ss_pred             c-cccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence            1 124689999998 99999999999999999999999999999999987 77999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCcccccccccccc-ccC-CcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881          180 RFFKLVQGHLSLDESEENNVRISEE-DLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (523)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~  257 (523)
                      ||+.++.++.++.+..      +.. +.. .++.+++.++++....+.+..|++++...+  .. -..++.+++.++++|
T Consensus       142 kFl~~V~n~~e~~~~~------~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~-ld~p~~~~~~ri~~Y  212 (440)
T KOG1439|consen  142 KFLKFVLNYDEEDPKT------WQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SY-LDQPAKETLERILLY  212 (440)
T ss_pred             HHHHHHhhhhhhcccc------ccccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hh-ccCccHHHHHHHHHH
Confidence            9999999886543221      222 232 389999999999999999988877765322  11 124678999999999


Q ss_pred             HHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009881          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (523)
Q Consensus       258 l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~  337 (523)
                      ++|+++||+.+  ++||+||.|||+|+|||.+|+.||+|+||.++.+|..++ +|++++|+ ..++..+|+.+|++|+|.
T Consensus       213 ~~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~  288 (440)
T KOG1439|consen  213 VRSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF  288 (440)
T ss_pred             HHHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence            99999999765  899999999999999999999999999999999998854 68888887 466778899999999886


Q ss_pred             CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC--CCCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCC
Q 009881          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG  415 (523)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G  415 (523)
                       ++-                 ....+++.|++||+++|...  +.+.++++||+.+.+  ..+.|||..+|+....||+|
T Consensus       289 -~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG  348 (440)
T KOG1439|consen  289 -PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEG  348 (440)
T ss_pred             -hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCc
Confidence             221                 01245799999999998653  345678888877665  36789999999999999999


Q ss_pred             cEEEEEEEeeccccchHHHHHHHHHHHH
Q 009881          416 MFVLYFSALCDEVNQGKKLLHAALSALQ  443 (523)
Q Consensus       416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (523)
                      +||.|+||..++ ..++..+.++++.|-
T Consensus       349 ~yia~vsT~~Et-~~pE~ei~~~lellg  375 (440)
T KOG1439|consen  349 KYIAYVSTTVET-PNPEVEILPGLELLG  375 (440)
T ss_pred             eEEEEEEeccCC-CChHHhhhhHHHhhC
Confidence            999999997655 467777777777664

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-52  Score=408.90  Aligned_cols=368  Identities=31%  Similarity=0.534  Sum_probs=304.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      +.+.|||||+|||+.+++.+++|+.+|++|+|+|+|++||+-.+++++.++..|++.+....                  
T Consensus         3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------   64 (434)
T COG5044           3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------   64 (434)
T ss_pred             ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------
Confidence            44679999999999999999999999999999999999999999999999889988763210                  


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                      . .....|+|++||. |+++++.++++.+|++.++.+|++|+.+...|+|. +|+++++|.++.++|+++.+++.+||.+
T Consensus        65 ~-k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v  141 (434)
T COG5044          65 S-KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV  141 (434)
T ss_pred             c-ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence            0 1124689999998 99999999999999999999999999999999887 6799999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~-~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~  257 (523)
                      |||++++.+|.+. .     ...-+.+.++++.+++. +|+++.....++.|++++.. +.+     +++++++.++.+|
T Consensus       142 mrFl~~V~n~~~~-~-----~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y  209 (434)
T COG5044         142 MRFLKWVSNYAEQ-K-----STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRY  209 (434)
T ss_pred             HHHHHHHHhHHhh-h-----hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHH
Confidence            9999999888542 1     11112355678888886 79999999999999988752 332     5789999999999


Q ss_pred             HHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009881          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (523)
Q Consensus       258 l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~  337 (523)
                      ++|++.||..+  ++||+||.+||+|+|||.+++.||+|+||+++.+|...   ..+.+|. .++.+++|.++|.+|++.
T Consensus       210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~  283 (434)
T COG5044         210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF  283 (434)
T ss_pred             HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc
Confidence            99999999755  99999999999999999999999999999999998643   2234665 577889999999988876


Q ss_pred             CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEec-CC--CCCCCCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCC
Q 009881          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL  414 (523)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~-~~--l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~  414 (523)
                       +.   +.. .       .   ....++.|++||.. +|  +....+.++++|||.++..  .+.|++..+|+++..||+
T Consensus       284 -~~---~~~-~-------~---~q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE  346 (434)
T COG5044         284 -RE---DSK-S-------V---GQFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE  346 (434)
T ss_pred             -cc---ccc-c-------c---chhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence             21   100 0       0   01136889999977 54  4444567899999988874  456999999999999999


Q ss_pred             CcEEEEEEEeeccccchHHHHHHHHHHHH
Q 009881          415 GMFVLYFSALCDEVNQGKKLLHAALSALQ  443 (523)
Q Consensus       415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (523)
                      |++|.|++|..++ ..++.++.++++.|.
T Consensus       347 Gy~l~yisT~~et-~~~e~ei~~~lell~  374 (434)
T COG5044         347 GYYLAYISTIDET-PTPEDEILAALELLG  374 (434)
T ss_pred             ceEEEEEEeccCC-CChHHHHHHHHHhhc
Confidence            9999999996554 478888888888665

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.95  E-value=2.4e-26  Score=248.58  Aligned_cols=344  Identities=15%  Similarity=0.133  Sum_probs=212.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccccC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (523)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.                                      
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~--------------------------------------   42 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED--------------------------------------   42 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------------------------
Confidence            699999999999999999999999999999999999999764                                      


Q ss_pred             CCceEEecCCCeEEecChHHHHHHhcCCc--cccccccccccee-eeccCCceeecCCCHHHHHhc-ccCChHhHHHHHH
Q 009881          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (523)
Q Consensus       105 ~r~f~ldl~GP~ll~~~~~lv~lL~~~~~--~~ylef~~~~~~~-~~~~dg~~~~vP~s~~~if~~-~~ls~~~k~~L~~  180 (523)
                       .+|.+|. |++++..++.+.+++...+.  .++++|...++.+ ++..+|+.+.++.+.+..... ..+.+.+...+.+
T Consensus        43 -~G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        43 -DGFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             -CCeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence             3467788 58888766666677777763  5678888777655 334467778888776533221 2234556666777


Q ss_pred             HHHHHHhhccc-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcc
Q 009881          181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (523)
Q Consensus       181 fl~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s  246 (523)
                      |++.+......       .+...  ..     ..........|+.+|++++..++.++.++.+.....  ..++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence            76655432210       00000  00     001122346899999999888888988765311111  1121  1122


Q ss_pred             hHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 009881          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (523)
Q Consensus       247 ~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~  326 (523)
                      +..   .+..+..    +.   +++++|.+|++.++++|.+.++..|++|+++++|++|..+  ++++++|++.+|+++.
T Consensus       197 ~~~---~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 SIY---ALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             HHH---HHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            221   1211211    11   1157899999999999999999999999999999999887  6778899999999999


Q ss_pred             cCEEEECCC--CCCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEec---CCCCCCCCceEEEcCCCCC--------
Q 009881          327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL--------  392 (523)
Q Consensus       327 A~~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~---~~l~~~~~~~~~~~p~~~~--------  392 (523)
                      ||+||++.+  .++..++ +.+. .+... +.+.............+.++   .++.....+.++..+....        
T Consensus       265 ad~VI~a~~~~~~~~~l~-~~~~-~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLL-PNHP-RRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK  342 (502)
T ss_pred             CCEEEECCcHHHHHHHhc-Cccc-cccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence            999997543  2322222 1110 11111 11111111112222222244   3332222222333231100        


Q ss_pred             C-CCCCceEEEEEeCCC-CCcCCCCcEEEEEEEeec
Q 009881          393 F-PEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD  426 (523)
Q Consensus       393 ~-~~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~  426 (523)
                      + -...+.+|+...+.. .+.+|+|+.++++.+.++
T Consensus       343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~  378 (502)
T TIGR02734       343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVP  378 (502)
T ss_pred             CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCC
Confidence            0 012567888887664 588999999998887664

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=99.94  E-value=1e-24  Score=235.09  Aligned_cols=386  Identities=13%  Similarity=0.130  Sum_probs=221.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      |||||||+|++||++|++|+++|++|+|||||+++||++++++.+|                                  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----------------------------------   46 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence            6999999999999999999999999999999999999999986543                                  


Q ss_pred             cCCCceEEecCCCeEEe------cChHHHHHHhcCCccccccccccccee-eeccCCceeecCCCHHHHHhc-ccCChHh
Q 009881          103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~------~~~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg~~~~vP~s~~~if~~-~~ls~~~  174 (523)
                           |.+|. |++++.      ....+.+.|...+.  .+++......+ +...+|....++.+.+..... ....+.+
T Consensus        47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                 44454 355432      12233444443332  24443333222 223356667777776544331 2334777


Q ss_pred             HHHHHHHHHHHHhhccc---C---c-cc-ccc--------cc--ccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccC
Q 009881          175 KNQLMRFFKLVQGHLSL---D---E-SE-ENN--------VR--ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD  235 (523)
Q Consensus       175 k~~L~~fl~~~~~~~~~---~---~-~~-~~~--------~~--~~~~~~~~s~~efl~~~~l~~~l~~~l~~-~i~l~~  235 (523)
                      ...+.+|++.+.+....   .   . .. ...        ..  ....+...++.++++++..++.++.++.+ +.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV  198 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence            77888887765432110   0   0 00 000        00  01123357899999999899999997653 322221


Q ss_pred             CCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881          236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (523)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~  315 (523)
                      .+.+    +++.   +..+..+.  ...++    ...+|.||+++|+++|.+.++.+||+|+++++|++|.++  ++++.
T Consensus       199 ~p~~----~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~  263 (493)
T TIGR02730       199 VPAD----QTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV  263 (493)
T ss_pred             CCcc----cchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence            1111    1122   11121111  11122    257899999999999999999999999999999999887  67889


Q ss_pred             EEEeCCCcEEEcCEEEECCC--CCCCCCCcc--cchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCC-ceEEEcCCC
Q 009881          316 GVRLASGQDILSHKLVLDPS--FTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS-NFLVIFPPR  390 (523)
Q Consensus       316 gV~l~~G~~i~A~~VI~~p~--~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~-~~~~~~p~~  390 (523)
                      +|++.+|+++.||+||++..  .++..|+..  .++..+..++.+..   ........+.++.++.+... ...+.++.-
T Consensus       264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~---s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~  340 (493)
T TIGR02730       264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVK---SPSFLSLHLGVKADVLPPGTECHHILLEDW  340 (493)
T ss_pred             EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccC---CCceEEEEEEecCccCCCCCCccEEecchh
Confidence            99999999999999997533  333333211  11111111111111   11223333345665433211 112333321


Q ss_pred             CCCCCCCceEEEEEeCCC-CCcCCCCcEEEEEEEeeccccc-------hHHHHHHHHHHHHhhhhcCCCCCCCCcccccc
Q 009881          391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEVNQ-------GKKLLHAALSALQKLLVTGTAGNSSTAQSEDM  462 (523)
Q Consensus       391 ~~~~~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~~~~~-------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  462 (523)
                      .......+.+|+...+.. ++.+|+|+.++++.+......|       -++.-+...++++.....         .-   
T Consensus       341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~---------~~---  408 (493)
T TIGR02730       341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEK---------IF---  408 (493)
T ss_pred             hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHH---------HC---
Confidence            111123567888887654 5789999999887664322111       122233344444432200         00   


Q ss_pred             ccCCcceEEEEEEEeecc
Q 009881          463 EEAKPTLLWSALYIQDLS  480 (523)
Q Consensus       463 ~~~~~~il~~~~~~~~~~  480 (523)
                      -..+.+|+|.-..+|.+.
T Consensus       409 p~l~~~I~~~~~~TP~t~  426 (493)
T TIGR02730       409 PGLDSAIDYKEVGTPRTH  426 (493)
T ss_pred             CChhhcEEEEEeeCchhH
Confidence            123567888877777654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=3.3e-25  Score=237.76  Aligned_cols=260  Identities=21%  Similarity=0.280  Sum_probs=169.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      +..+||||||||++||+||+.|||+|++|+|||||+++||++++++++                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            356999999999999999999999999999999999999999998653                                


Q ss_pred             ccccCCCceEEecCCCeEEecChHHHHHHhcCC-cccc-ccccccccee-eeccCCceeecCCCHHHHHh-cccCChHhH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~-~~~y-lef~~~~~~~-~~~~dg~~~~vP~s~~~if~-~~~ls~~~k  175 (523)
                             +|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+.+.... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   467787 58777555543 4444444 4444 7777766666 44445778888777654332 233345556


Q ss_pred             HHHHHHHHHHHhhccc-C---cc-cccc----ccc------cccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcch
Q 009881          176 NQLMRFFKLVQGHLSL-D---ES-EENN----VRI------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (523)
Q Consensus       176 ~~L~~fl~~~~~~~~~-~---~~-~~~~----~~~------~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~  240 (523)
                      ..+++++..+.+..+. .   .. ....    ...      .......+..++++.+-.++.++..+.+......  ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence            5666666543321110 0   00 0000    000      0012235667777655556677776665432221  221


Q ss_pred             hhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (523)
Q Consensus       241 ~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~  320 (523)
                      .     ...++..+..+   ++ +..  | +.||+||++.|+++|.+.++++||+|+++++|++|.++  +|+.++|++.
T Consensus       198 ~-----~~~a~~~~~~~---~~-~~~--G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 S-----TPPALYLLLSH---LG-LSG--G-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             C-----chhHHHHHHHH---hc-ccC--C-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            0     01122222221   11 221  2 67999999999999999999999999999999999998  7777788877


Q ss_pred             CCcEEEcCEEEECCCC
Q 009881          321 SGQDILSHKLVLDPSF  336 (523)
Q Consensus       321 ~G~~i~A~~VI~~p~~  336 (523)
                      +|+.+.+|.||.+.+.
T Consensus       264 ~g~~~~ad~vv~~~~~  279 (487)
T COG1233         264 DGENIEADAVVSNADP  279 (487)
T ss_pred             ccceeccceeEecCch
Confidence            8878999999976544

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.94  E-value=7e-24  Score=228.74  Aligned_cols=382  Identities=13%  Similarity=0.055  Sum_probs=208.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      .||||||+|++||+||++|+++|++|+|||+++++||++++++.+                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            599999999999999999999999999999999999999998643                                   


Q ss_pred             cCCCceEEecCCCeEEec---ChHHHHHHhcCCccccccccccccee-eeccCC-ceeecCCCHHHHHhc-ccCChHhHH
Q 009881          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg-~~~~vP~s~~~if~~-~~ls~~~k~  176 (523)
                          +|.+|. |++++..   .+.+-+++.+.|+... ++...++.+ ++..|| +.+.++.+.+..... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                467777 5887743   3345556666776421 123333332 333456 345556665432210 111233321


Q ss_pred             HHHHHHHHH----HhhcccCc----cc-ccc---------cc-ccccccCCcHHHHHHhc--CCChhHHHHHHHHHhccC
Q 009881          177 QLMRFFKLV----QGHLSLDE----SE-ENN---------VR-ISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMAD  235 (523)
Q Consensus       177 ~L~~fl~~~----~~~~~~~~----~~-~~~---------~~-~~~~~~~~s~~efl~~~--~l~~~l~~~l~~~i~l~~  235 (523)
                       +++.+..+    .......+    .. ...         .. ....+...|+.+|++++  ..++.++.++......  
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--  197 (492)
T TIGR02733       121 -FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--  197 (492)
T ss_pred             -HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--
Confidence             11111100    00000000    00 000         00 00113358999999986  4567788876532211  


Q ss_pred             CCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881          236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (523)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~  315 (523)
                      +...+ ..+.++..++.     +..+.....  | ++||+||+++|+++|.+.++..||+|+++++|++|.++  ++++.
T Consensus       198 ~~~~~-~~~~~~~~~~~-----~~~~~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~  266 (492)
T TIGR02733       198 YSQED-ADETAALYGAT-----VLQMAQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAG  266 (492)
T ss_pred             hccCC-hhhhhHHHHHH-----HhhccccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEE
Confidence            11111 01122222111     111111111  2 46899999999999999999999999999999999987  56667


Q ss_pred             EEEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhh-hcccCCCcceEEEEEEEecCCCCC-C-CCceEEE
Q 009881          316 GVRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSSLKP-D-LSNFLVI  386 (523)
Q Consensus       316 gV~l~~G-----~~i~A~~VI~~p~-~~~~~l~~~~~~~l~~~~~-~l~~~~~~~~v~r~i~i~~~~l~~-~-~~~~~~~  386 (523)
                      +|++.+|     +++.||+||++.+ ..+.+++ + ++.++..+. .+.+...........+.++....+ . ..+....
T Consensus       267 gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~  344 (492)
T TIGR02733       267 WVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFL  344 (492)
T ss_pred             EEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeec
Confidence            7877665     5799999997533 2223332 1 122222221 222211111122233445553211 1 1122222


Q ss_pred             cCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccc-------hHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009881          387 FPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQ-------GKKLLHAALSALQKLLVTGTAGNSSTAQS  459 (523)
Q Consensus       387 ~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~-------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  459 (523)
                      +.+       ...+|+...+.+++.+|+|+.++++++.++...+       -++.-+...++++.....         .-
T Consensus       345 ~~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~---------~~  408 (492)
T TIGR02733       345 SDH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGH---------YF  408 (492)
T ss_pred             cCC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---------HC
Confidence            221       2268887777777889999999988876642211       123333455555543210         00


Q ss_pred             cccccCCcceEEEEEEEeecc
Q 009881          460 EDMEEAKPTLLWSALYIQDLS  480 (523)
Q Consensus       460 ~~~~~~~~~il~~~~~~~~~~  480 (523)
                         -+.+.+|++.-..+|.+.
T Consensus       409 ---p~l~~~i~~~~v~TP~t~  426 (492)
T TIGR02733       409 ---DLLEENWVHVELATPRTF  426 (492)
T ss_pred             ---CCccccEEEEEccCCchH
Confidence               123556777666666543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.92  E-value=1.4e-22  Score=216.91  Aligned_cols=351  Identities=14%  Similarity=0.148  Sum_probs=207.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (523)
                      ..||||||||++||+||..|+++    |++|+|+|+++++||+++|.+.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999986532                              


Q ss_pred             ccccccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHH
Q 009881           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (523)
Q Consensus        98 ~~~~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~  176 (523)
                               +|.+|+ |+++++... .+.+++.+.|+..++........+++..+|+++++|.+..+.++...+++.+|.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     356677 688886665 488889899987765443333344444238888899876666666555555544


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHH
Q 009881          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (523)
Q Consensus       177 ~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~  256 (523)
                      .+.  +......              ....+.|+.||+++.. .+.+.+.+...+....+..++  +++++..++.++..
T Consensus       122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDFIRPA--------------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhhccCC--------------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence            332  1111000              0123589999998653 344433333222222233333  33566655544322


Q ss_pred             HHHh-------h------------hcccCCCcc-EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEE
Q 009881          257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (523)
Q Consensus       257 ~l~s-------~------------g~~g~~~~~-~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~g  316 (523)
                      ....       +            ..+..+.+. +.++++|+++|++++++.+.  .+.|+++++|++|..+  +++ +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            1111       0            001111122 56789999999998886553  3789999999999875  333 46


Q ss_pred             EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC-CCCCCceEEEcCCCCCCC
Q 009881          317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP  394 (523)
Q Consensus       317 V~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l-~~~~~~~~~~~p~~~~~~  394 (523)
                      |++++|+++.||+||+. |...+..++.+..+.   ..+.+. ...+..+....+.++++. ........+..|....  
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~---~~~~l~-~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~--  331 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGLLSELSNS---ASSHLD-KIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK--  331 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHHhcccCHH---HHHHHh-cCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence            77778888999999964 433323332111111   122222 223566777777787763 3222344445553321  


Q ss_pred             CCCceEEEEEeCCC-CCcCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHh
Q 009881          395 EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQK  444 (523)
Q Consensus       395 ~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~  444 (523)
                        .....+...++. ...+|+|..++.+......     ..+.++.++.+++.|-+
T Consensus       332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~  385 (462)
T TIGR00562       332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK  385 (462)
T ss_pred             --CceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence              122233333222 4678989877755432211     11234555555555544

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07233 hypothetical protein; Provisional

Probab=99.91  E-value=5e-22  Score=210.63  Aligned_cols=347  Identities=15%  Similarity=0.144  Sum_probs=195.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (523)
                      +|||||||++||+||..|+++|++|+|||+++++||+++++..++                                   
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g-----------------------------------   45 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG-----------------------------------   45 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence            589999999999999999999999999999999999999976543                                   


Q ss_pred             CCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHH
Q 009881          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (523)
Q Consensus       104 ~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl  182 (523)
                          |.+|. |.++++. ...+.+++.+.|+.....+......+.+  +|+.++++. ...+.+...+++.++..+...+
T Consensus        46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence                22233 2343332 3367788888888655555443332322  566554432 2344444555665555433222


Q ss_pred             HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhh
Q 009881          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (523)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g  262 (523)
                      ...... .          ...+..+.++.+|++++..++..+.++. .+....+..++  +++++...+..+..+...  
T Consensus       118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWE-PLLESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHH-HHHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111110 0          0123456899999997654444445443 21111122222  335665554444332111  


Q ss_pred             cccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009881          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (523)
Q Consensus       263 ~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l  341 (523)
                      ........+.+|++|++.|+++|.+.+...|++|+++++|++|..+  +++++.+. .+|+++.||+||++ |...+..+
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0000011267899999999999999999999999999999999876  55555554 57889999999964 33333343


Q ss_pred             CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeCCC-CCcCCCCcEEEE
Q 009881          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-LAVCPLGMFVLY  420 (523)
Q Consensus       342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~-~~~cP~G~~vi~  420 (523)
                      +.+..+.   ....+.+ ..+.......+-+++++.+   ...+.++...     .....+...+.. ...+|+|..+++
T Consensus       259 l~~~~~~---~~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~g~~~~~  326 (434)
T PRK07233        259 VPDLPAD---VLARLRR-IDYQGVVCMVLKLRRPLTD---YYWLNINDPG-----APFGGVIEHTNLVPPERYGGEHLVY  326 (434)
T ss_pred             cCCCcHH---HHhhhcc-cCccceEEEEEEecCCCCC---CceeeecCCC-----CCcceEEEecccCCccccCCceEEE
Confidence            2111111   1111221 1233445555556777643   2222222111     111222333322 345667877766


Q ss_pred             EEEeeccc-----cchHHHHHHHHHHHHh
Q 009881          421 FSALCDEV-----NQGKKLLHAALSALQK  444 (523)
Q Consensus       421 ~st~~~~~-----~~~~~~l~~~~~~l~~  444 (523)
                      ++..+...     ...++.++.+++.|-+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  355 (434)
T PRK07233        327 LPKYLPGDHPLWQMSDEELLDRFLSYLRK  355 (434)
T ss_pred             EeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence            65544321     1224455555555544

>PLN02576 protoporphyrinogen oxidase

Probab=99.91  E-value=5.9e-22  Score=214.03  Aligned_cols=295  Identities=17%  Similarity=0.162  Sum_probs=183.3

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceec
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEIS   94 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (523)
                      .+....++||||||||++||+||++|+++ |++|+|||+++++||++.|++.+                           
T Consensus         6 ~~~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~---------------------------   58 (496)
T PLN02576          6 GSAAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED---------------------------   58 (496)
T ss_pred             cccccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC---------------------------
Confidence            34556678999999999999999999999 99999999999999999997542                           


Q ss_pred             cccccccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccc-cceeeeccCCceeecCCCHHHHHhcccCChH
Q 009881           95 NYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLM  173 (523)
Q Consensus        95 ~~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~-~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~  173 (523)
                                  +|.+|. ||+.++..++.+..|.+.++..++.|... ...+++. +|+++++|.+..+.+....+++.
T Consensus        59 ------------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~  124 (496)
T PLN02576         59 ------------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAP  124 (496)
T ss_pred             ------------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChh
Confidence                        355677 68888777776666666688777666432 2334443 88999999887666666667766


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHH
Q 009881          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINR  253 (523)
Q Consensus       174 ~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~  253 (523)
                      +|..+..-..   .....          .....+.|+.+|+++. +.+.+.+.+.-.+....+..++  .++|+..++..
T Consensus       125 ~~~~~~~~~~---~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~  188 (496)
T PLN02576        125 GKIRAGLGAF---GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPK  188 (496)
T ss_pred             HHHHHhHHHh---hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHH
Confidence            6554332110   11000          0113468999999975 5555554443333233334443  34666665554


Q ss_pred             HHHHHHhhhc--------c----------------c-CCCccEEeecCCcChHHHHHHHHHHHcC-cEEEcCCceeEEEE
Q 009881          254 LALYNSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLT  307 (523)
Q Consensus       254 ~~~~l~s~g~--------~----------------g-~~~~~~~~p~gG~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~  307 (523)
                      +...-.+.|.        .                . ...+.+.++++|++.|+++|++   .+| +.|++|++|++|..
T Consensus       189 ~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~  265 (496)
T PLN02576        189 LWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSK  265 (496)
T ss_pred             HHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEE
Confidence            3322111100        0                0 0112256789999999998875   346 78999999999987


Q ss_pred             ecCCCcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          308 DQNSGSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       308 ~~~~g~~~gV~l--~~G~-~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      +  ++..+.|.+  .+|+ ++.||+||+. |...+..++.+..   ++..+.+.+ ..+..+..+.+.+++++
T Consensus       266 ~--~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~-~~~~~~~~v~l~~~~~~  332 (496)
T PLN02576        266 N--DDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPE-FYYPPVAAVTTSYPKEA  332 (496)
T ss_pred             C--CCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhcc-CCCCceEEEEEEEchHH
Confidence            6  332133433  3554 6999999964 4443333322212   222222322 22445666666677753

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.90  E-value=1.6e-21  Score=208.83  Aligned_cols=325  Identities=12%  Similarity=0.150  Sum_probs=189.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccc
Q 009881           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~------G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (523)
                      .+|||||||++||+||..|+++      |.+|+|||+++++||+++|.+.+                             
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-----------------------------   52 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-----------------------------   52 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence            3699999999999999999996      37999999999999999997532                             


Q ss_pred             cccccccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCC--------HHHHHhc
Q 009881           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (523)
Q Consensus        97 ~~~~~~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s--------~~~if~~  167 (523)
                                +|.+|+ |+++++.. ..+.+++.+.|+..+..+..-...+++. +|++.++|.+        ..+.++.
T Consensus        53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                      345676 58777554 4677888899987766555443445554 5666666543        2233333


Q ss_pred             ccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcch
Q 009881          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (523)
Q Consensus       168 ~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~  247 (523)
                      ..++...|...+      ...... .        ...+.+.|+.+|+++. +.+.+.+.++..+....+..++  .++++
T Consensus       121 ~~~~~~~~~~~~------~~~~~~-~--------~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIVAL------KDFITK-N--------KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHHhh------hhhccC-C--------CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCc--ccccH
Confidence            334333222211      111100 0        0113578999999975 3444333222222222233333  23555


Q ss_pred             HHHHHHHHHHHHhhhcc------------cCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEE
Q 009881          248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (523)
Q Consensus       248 ~~~l~~~~~~l~s~g~~------------g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~  315 (523)
                      ...+..+..+....+.+            +.....+.++++|++.|+++|++.+..  ++|+++++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            54444444333222110            011123778999999999999876533  689999999999876  444 5


Q ss_pred             EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-CCCceEEEcCCCCCC
Q 009881          316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF  393 (523)
Q Consensus       316 gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~-~~~~~~~~~p~~~~~  393 (523)
                      .|++.+|+++.||+||++ |...+..+.  .++++++....+.    +..+....+.++++... .....-+++|+..  
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~~----~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~--  329 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTFK----NSSLISIYLGFDILDEQLPADGTGFIVTENS--  329 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcCC----CCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence            777788888999999965 433334432  2344554443332    34566666677765321 1123444555432  


Q ss_pred             CCCCceEEEEEeCCC--CCcCCCCcEEEEEE
Q 009881          394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS  422 (523)
Q Consensus       394 ~~~~~~v~v~~~s~~--~~~cP~G~~vi~~s  422 (523)
                         ...+-...+.+.  ...+|++..++.++
T Consensus       330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~  357 (463)
T PRK12416        330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF  357 (463)
T ss_pred             ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence               111222233322  24567777666654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.89  E-value=4.2e-21  Score=204.72  Aligned_cols=325  Identities=14%  Similarity=0.171  Sum_probs=185.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      +|||||||++||+||..|+++|  ++|+|+|+++++||+++|++.++                                 
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g---------------------------------   48 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG---------------------------------   48 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence            6999999999999999999988  89999999999999999976432                                 


Q ss_pred             ccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCH--------HHHHhcccCCh
Q 009881          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~--------~~if~~~~ls~  172 (523)
                            +.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++. +|+++.+|...        ...+..+.++.
T Consensus        49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                  44566 465444433 577888888887654433212234443 77777776431        01111112221


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHH
Q 009881          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (523)
Q Consensus       173 ~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~  252 (523)
                      .++.+.      ......         .......++|+.||+++. +.+...+.++..+....+..++  .++|+...+.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111110      001000         001234578999999863 4544443333232222233332  3356555444


Q ss_pred             HHHHHHHhhh-----------ccc-CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (523)
Q Consensus       253 ~~~~~l~s~g-----------~~g-~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~  320 (523)
                      .+..+....+           ... .....+.++++|++.|++++++.+...  +|+++++|++|..+  ++. +.|.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            4433322111           000 011225679999999999887654322  89999999999875  333 567778


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCce
Q 009881          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS  399 (523)
Q Consensus       321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~  399 (523)
                      +|+++.||+||++ |...+..+.  .++++.+..+    +..+..+.+..+.+++++...+....+.+++..     +.+
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~~----~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~  326 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALFK----TIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT  326 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHHh----CCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence            9999999999975 433323332  1222222222    223556777777788886322333344444321     122


Q ss_pred             EEEE-EeCCC-CCcCCCCcEEEEEEE
Q 009881          400 IRVL-QLGGN-LAVCPLGMFVLYFSA  423 (523)
Q Consensus       400 v~v~-~~s~~-~~~cP~G~~vi~~st  423 (523)
                      +..+ ..+.. ...+|.|..++.++.
T Consensus       327 ~~~~~~~s~~~~~~~p~g~~~~~~~~  352 (451)
T PRK11883        327 ITACTWTSKKWPHTTPEGKVLLRLYV  352 (451)
T ss_pred             EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence            3333 23322 466788888877665

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.89  E-value=9.5e-21  Score=197.09  Aligned_cols=347  Identities=16%  Similarity=0.191  Sum_probs=212.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      .|+|||||++||+||++|+++|  .+|+|+|+.++.||..+|+..+                                  
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~----------------------------------   47 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID----------------------------------   47 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence            5899999999999999999999  9999999999999999998643                                  


Q ss_pred             ccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHH
Q 009881          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~  180 (523)
                           +|.+|. ||+.++.+ ...++++.+.|.++.+.+..-...|++. +|+++++|...  ++.-+.+....+..+.+
T Consensus        48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                 356677 57776555 6889999999999888777655556665 89999999874  44333322212223333


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHh
Q 009881          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS  260 (523)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s  260 (523)
                      ++.......           .+....+.++.+|++++ +.+++.+.++-.+.-.-|..+.  +.+|+..+...+.+-.+.
T Consensus       119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~  184 (444)
T COG1232         119 ALQEFIRPK-----------SWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK  184 (444)
T ss_pred             HHHhhhccc-----------CCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence            332211110           02345688999999853 2333333222121111122222  335665222222111111


Q ss_pred             hhcc-------c--C---CCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 009881          261 IGRF-------Q--N---ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (523)
Q Consensus       261 ~g~~-------g--~---~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~  328 (523)
                      .+..       +  .   ..+.|.++++|+++|++++.+.+...   ++++++|+.|..+. ++  +++.+.+|+++.||
T Consensus       185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~--~~~~~~~g~~~~~D  258 (444)
T COG1232         185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG--KTIVDVGGEKITAD  258 (444)
T ss_pred             hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc--cEEEEcCCceEEcc
Confidence            1111       0  0   01237788999999999999877666   99999999998752 23  45556889999999


Q ss_pred             EEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCC-CCCCCCceEEEcCCCCCCCCCCceEEEEEeC
Q 009881          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG  406 (523)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~-l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s  406 (523)
                      .||++ |.+.++.++.+  ......   +.+. ....++.+++.++.+ ....+++..+.+|....     . +.....+
T Consensus       259 ~VI~t~p~~~l~~ll~~--~~~~~~---~~~~-~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~~  326 (444)
T COG1232         259 GVISTAPLPELARLLGD--EAVSKA---AKEL-QYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITFH  326 (444)
T ss_pred             eEEEcCCHHHHHHHcCC--cchhhh---hhhc-cccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEEe
Confidence            99964 55444444322  111111   1111 234566777777774 33344566777764331     1 3333333


Q ss_pred             CC--CCcCCCCcEEEEEEEeecccc-----chHHHHHHHHHHHHhh
Q 009881          407 GN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL  445 (523)
Q Consensus       407 ~~--~~~cP~G~~vi~~st~~~~~~-----~~~~~l~~~~~~l~~~  445 (523)
                      +.  ....|+|+.++++........     .-++.++.+++.|-+.
T Consensus       327 S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~  372 (444)
T COG1232         327 SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL  372 (444)
T ss_pred             cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence            33  467799999999987554311     1256666666666553

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.89  E-value=3.2e-20  Score=198.31  Aligned_cols=296  Identities=17%  Similarity=0.168  Sum_probs=179.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (523)
                      +|+|||+|++||+||..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999986421                                    


Q ss_pred             CCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeee-ccCCcee--ecC---CCH---HHHHh-cccCCh
Q 009881          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (523)
Q Consensus       104 ~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~-~~dg~~~--~vP---~s~---~~if~-~~~ls~  172 (523)
                        .++.+|. |++++... ..+.+++.+.|+...+.|......+.. ..++...  ..|   ...   .++++ ...++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1234566 46766443 367888888998776666543332221 1122222  122   211   12222 223455


Q ss_pred             HhHHHHHHHH-HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHH
Q 009881          173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (523)
Q Consensus       173 ~~k~~L~~fl-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l  251 (523)
                      .+|.++..-+ ......          .+...++.+.|+.+|+++.+.++.+.+.+...+....+..++  +++|+...+
T Consensus       122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~  189 (453)
T TIGR02731       122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVL  189 (453)
T ss_pred             HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence            5554433211 111000          011234567899999999999988776433222111122233  346777776


Q ss_pred             HHHHHHHHhhhcccCCCccEEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-----EE
Q 009881          252 NRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DI  325 (523)
Q Consensus       252 ~~~~~~l~s~g~~g~~~~~~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-----~i  325 (523)
                      ..+..++.  +.+|.   -..+..+| ++.+++++.+.++..|++|++|++|++|..++ ++++++|++.+|+     ++
T Consensus       190 ~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~  263 (453)
T TIGR02731       190 TALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEV  263 (453)
T ss_pred             HHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEE
Confidence            66665543  22331   12345555 46899999999999999999999999998652 6667888887766     79


Q ss_pred             EcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          326 LSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       326 ~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                      .||.||++ |...+.+++ +...+-....+.+.. .....+.++.+.+++++..
T Consensus       264 ~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~~  315 (453)
T TIGR02731       264 TADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLNG-LEGVPVINVHIWFDRKLTT  315 (453)
T ss_pred             ECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhhc-CCCCcEEEEEEEEccccCC
Confidence            99999964 333334442 211100111122221 1244678888889998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07208 hypothetical protein; Provisional

Probab=99.89  E-value=3.2e-20  Score=199.72  Aligned_cols=351  Identities=15%  Similarity=0.186  Sum_probs=191.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      +...||||||||++||+||..|+++|++|+|+|+++++||++.+...+                                
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------------------   49 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------------------   49 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------------------
Confidence            566899999999999999999999999999999999999999986543                                


Q ss_pred             ccccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                             +|.+|+ |+++++..+ .+.+++.+.+..+........ .+++. +|+...+|.+..+.++  .+++.++...
T Consensus        50 -------g~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~~  117 (479)
T PRK07208         50 -------GNRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPRL-SRIYY-RGKFFDYPLKAFDALK--NLGLWRTAKC  117 (479)
T ss_pred             -------CceEcc-CCceeccCCHHHHHHHHHhcCCCcccccccc-ceEEE-CCEEecCCcchhHHHH--hCCHhHHHHH
Confidence                   244566 577776554 567777777652222222111 22332 7888888876433332  2333322221


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHH-HHHH-HHHhccCCCcchhhhhcchHHHHHHH--
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVL-YAIAMADYDQEVSEYVLKTRDGINRL--  254 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~-~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~--  254 (523)
                      +  ........            .....+.++.||+++. +.+.+. .++. +...+  +..++  +++|+..++.++  
T Consensus       118 ~--~~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~  178 (479)
T PRK07208        118 G--ASYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG  178 (479)
T ss_pred             H--HHHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence            1  11111110            0112468999999963 333333 3332 22222  23333  335665433221  


Q ss_pred             -------HHHHHhh-h-------cccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe
Q 009881          255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL  319 (523)
Q Consensus       255 -------~~~l~s~-g-------~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l  319 (523)
                             ...+... +       ..+.....+.||++|+++|+++|.+.++..|++|++|++|++|..+. ++.++.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~  257 (479)
T PRK07208        179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV  257 (479)
T ss_pred             CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence                   1122211 0       00100123779999999999999999999999999999999998862 343444443


Q ss_pred             --CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCC
Q 009881          320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFP  394 (523)
Q Consensus       320 --~~G~--~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~  394 (523)
                        .+|+  ++.||+||++ |...+..++.   ++++...........+..+..+.+.++++.... .. .+.+|+.... 
T Consensus       258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~~-~~~~~~~~~~-  331 (479)
T PRK07208        258 NDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-DN-WIYIHDPDVK-  331 (479)
T ss_pred             EcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-Cc-eEEecCCCCc-
Confidence              2454  5899999975 3332222221   112222222112222344555555667653211 12 2334332211 


Q ss_pred             CCCceEEEEEeCC-CCCcCCCCc-EEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009881          395 EQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDEV-----NQGKKLLHAALSALQK  444 (523)
Q Consensus       395 ~~~~~v~v~~~s~-~~~~cP~G~-~vi~~st~~~~~-----~~~~~~l~~~~~~l~~  444 (523)
                        .  -.+..++. +...+|+|+ ..+.+...+...     ..-++.++.+++.|..
T Consensus       332 --~--~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~  384 (479)
T PRK07208        332 --V--GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELAR  384 (479)
T ss_pred             --c--ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHH
Confidence              0  12222332 246679987 344333322211     1234566666666655

>PLN02612 phytoene desaturase

Probab=99.88  E-value=6.7e-20  Score=200.08  Aligned_cols=295  Identities=14%  Similarity=0.144  Sum_probs=181.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      ..||+|||+|++||++|.+|+++|++|+++|+++++||++.++...                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4789999999999999999999999999999999999999997531                                  


Q ss_pred             ccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeec-cCCcee--e----cCCC---HHHHHh-ccc
Q 009881          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS  169 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~-~dg~~~--~----vP~s---~~~if~-~~~  169 (523)
                          .++.+|. |+++++.. ..+.++|.+.|+...++|......+.+. .++...  .    .|..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                1244555 57776543 3678888899987777766543333221 122222  1    2222   112232 234


Q ss_pred             CChHhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881          170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (523)
Q Consensus       170 ls~~~k~~L~~-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (523)
                      +++.+|.++.. ++....   ..       .....++.+.|+.||+++++.++.+.+-++..+...-+..++  +++|+.
T Consensus       214 ls~~~kl~~~~~~~~~~~---~~-------~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~  281 (567)
T PLN02612        214 LTWPEKIKFAIGLLPAIV---GG-------QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQ  281 (567)
T ss_pred             CCHHHHHHHHHhhhHHhc---cc-------chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHH
Confidence            44444443221 111000   00       011224557899999999999987775332222111112222  335666


Q ss_pred             HHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 009881          249 DGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (523)
Q Consensus       249 ~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A  327 (523)
                      ..+..+..++..  +.|.   ...++.|+. ..|+++|.+.++..||+|++|++|++|..++ ++++++|++.+|+++.|
T Consensus       282 ~~l~~l~~~l~~--~~gs---~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~a  355 (567)
T PLN02612        282 CILIALNRFLQE--KHGS---KMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEG  355 (567)
T ss_pred             HHHHHHHHHHhc--cCCc---eEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEEC
Confidence            666555554331  2221   245676665 5799999998888999999999999998853 66677888889999999


Q ss_pred             CEEEEC-CCCCCCCCCcccc--hhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          328 HKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       328 ~~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                      |+||++ |...+..++....  .++....+.+    ....+.+..+.+++++.
T Consensus       356 d~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~  404 (567)
T PLN02612        356 DVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK  404 (567)
T ss_pred             CEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence            999975 4333333321111  1223222222    13446777777899874

>PLN02487 zeta-carotene desaturase

Probab=99.85  E-value=4.6e-19  Score=191.81  Aligned_cols=270  Identities=17%  Similarity=0.200  Sum_probs=171.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ...+|+|||+|++||++|..|+++|++|+++|+++++||+++++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            44699999999999999999999999999999999999999987421                                 


Q ss_pred             cccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCcee----ecC--CC---HHHHHhcccC
Q 009881          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL  170 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~----~vP--~s---~~~if~~~~l  170 (523)
                           .++.+|. |+++++.. ..+.++|.+.|+...+.+......|. ..+|++.    ++|  ..   ...+++...+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 2344555 57776543 36888899999876665543222222 2244441    122  21   1245566777


Q ss_pred             ChHhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcch
Q 009881          171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (523)
Q Consensus       171 s~~~k~~L~~fl--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~  247 (523)
                      ++.+|.++..-+  . .+.....  ..  ...+.+....+.|+.+|+++++.++.+.+-++..+....+..++  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            777776653211  1 0111000  00  00111223456999999999988875444333333222223332  44677


Q ss_pred             HHHHHHHHHHHHhhhcccCCCccEEeecCCcCh-HHHHHHHHHHHcCcEEEcCCceeEEEEecC-CC--cEEEEEe---C
Q 009881          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (523)
Q Consensus       248 ~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~e-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l---~  320 (523)
                      ..++..+..+.  .+.-+   +-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ +|  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            77666553322  11111   226799999985 999999999999999999999999998731 22  3788887   3


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCC
Q 009881          321 SGQDILSHKLVLD-PSFTVPGS  341 (523)
Q Consensus       321 ~G~~i~A~~VI~~-p~~~~~~l  341 (523)
                      +++++.||.||++ |.+.+..|
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~L  364 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRL  364 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHh
Confidence            4557899999964 43333344

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.84  E-value=3.7e-19  Score=190.56  Aligned_cols=267  Identities=17%  Similarity=0.180  Sum_probs=171.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (523)
                      +|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999986321                                    


Q ss_pred             CCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceee--------cC-CCHHHHHhcccCChH
Q 009881          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM  173 (523)
Q Consensus       104 ~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~--------vP-~s~~~if~~~~ls~~  173 (523)
                        .+|.+|. |+++++... .+.+++.+.|+...+.+......+.. .++++..        .| .....+++.+.+++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              2345666 588776443 67778888888765544432222221 1333221        23 223466777888888


Q ss_pred             hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHH
Q 009881          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (523)
Q Consensus       174 ~k~~L~~fl~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (523)
                      +|.++.+.+..   ...... ..   ...+.+....+.|+.+|+++++.++.+.+.+...+..+.+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            88776554321   111100 00   00011223456999999999999986444333222222222232  34677776


Q ss_pred             HHHHHHHHHhhhcccCCCccEEeecCCcCh-HHHHHHHHHHHcCcEEEcCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 009881          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (523)
Q Consensus       251 l~~~~~~l~s~g~~g~~~~~~~~p~gG~~e-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l~~G---~  323 (523)
                      +..++.+.  .++.+   +-+.++++|.++ +.+.+.+.++..||+|+++++|++|..+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            66555333  23333   126789999876 778899999999999999999999987621 12  3677777554   5


Q ss_pred             EEEcCEEEEC-CCCCCCCC
Q 009881          324 DILSHKLVLD-PSFTVPGS  341 (523)
Q Consensus       324 ~i~A~~VI~~-p~~~~~~l  341 (523)
                      ++.||+||++ |.+....|
T Consensus       270 ~~~aD~VVlA~p~~~~~~L  288 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRL  288 (474)
T ss_pred             EEECCEEEECCChHHHHhh
Confidence            6899999964 44443444

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02268 probable polyamine oxidase

Probab=99.80  E-value=4.1e-18  Score=181.11  Aligned_cols=273  Identities=14%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      .+|||||||++||+||..|.++|++|+|||+++++||+++|....                                   
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~-----------------------------------   45 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF-----------------------------------   45 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence            379999999999999999999999999999999999999985421                                   


Q ss_pred             cCCCceEEecCCCeEEec---ChHHHHHHhcCCcccccccccccceeeecc--------CCceeecCCCHHHHHhcccCC
Q 009881          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDA--------DAKLCSVPDSRAAIFKDKSLG  171 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~~~~~--------dg~~~~vP~s~~~if~~~~ls  171 (523)
                          ++.+|+ |+++++.   ..++.+++.+.|+..+-..  .+..+++..        ++....+|...   ..     
T Consensus        46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----  110 (435)
T PLN02268         46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDMDGNQVPQEL---VT-----  110 (435)
T ss_pred             ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecCCCCCCCHHH---HH-----
Confidence                244677 6888864   2357788888887543211  111111110        11111122110   00     


Q ss_pred             hHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-C------hhHHHHHHHHH-hc-cCCCcchhh
Q 009881          172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AM-ADYDQEVSE  242 (523)
Q Consensus       172 ~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l-~------~~l~~~l~~~i-~l-~~~~~~~~~  242 (523)
                       .-+..+.++++.+....            .....+.|+.+|++++.. .      ...++++.+.+ .+ .-+..++  
T Consensus       111 -~~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  175 (435)
T PLN02268        111 -KVGETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--  175 (435)
T ss_pred             -HHHHHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--
Confidence             00111222222222110            012356788998765321 1      12233332111 00 1122222  


Q ss_pred             hhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC
Q 009881          243 YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (523)
Q Consensus       243 ~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G  322 (523)
                      +++|+...       . ....+.   |.-.+..+|++.|++++++     |..|+++++|++|..+  ++. +.|++.+|
T Consensus       176 ~~ls~~~~-------~-~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g  236 (435)
T PLN02268        176 DTISLKSW-------D-QEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDG  236 (435)
T ss_pred             HhCchhhc-------C-CccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCC
Confidence            22333210       0 000010   1123677899999998754     5579999999999876  333 46777889


Q ss_pred             cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009881          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (523)
Q Consensus       323 ~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~  379 (523)
                      +++.||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus       237 ~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        237 TTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             cEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            89999999964 5444332223455667766655444445788899999999986443

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.79  E-value=5e-17  Score=171.34  Aligned_cols=276  Identities=16%  Similarity=0.164  Sum_probs=166.9

Q ss_pred             HHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccccCCCceEEecCCC
Q 009881           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (523)
Q Consensus        36 ~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~f~ldl~GP  115 (523)
                      +||..|+++|++|+|||+++++||++.|++.++.                                     .+.+|+ |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            4899999999999999999999999999865431                                     123566 57


Q ss_pred             eEEecC-hHHHHHHhcCCcccccccccccceeeeccCCce--e---ecCCC---HHHHHhcccCChHhHHHHHHHHHHHH
Q 009881          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C---SVPDS---RAAIFKDKSLGLMEKNQLMRFFKLVQ  186 (523)
Q Consensus       116 ~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~--~---~vP~s---~~~if~~~~ls~~~k~~L~~fl~~~~  186 (523)
                      ++++.. ..+.+++.+.|+..+..+. .....++..++..  .   ++|..   ...+.+...+++.+|..+.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGP-RLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhcc-cCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            777654 4678888888887765542 1222222223321  1   12221   12233456677778877776654433


Q ss_pred             hhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccC
Q 009881          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (523)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~  266 (523)
                      ...            ..++.+.|+.+|+++++.++.+.+.+...+....+..++  +++|+...+..+..   .+.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            211            123457899999999888877776544322222233333  33565554443322   1111111


Q ss_pred             CCccEEeecCCcChHH-HHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 009881          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS  344 (523)
Q Consensus       267 ~~~~~~~p~gG~~eL~-qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~  344 (523)
                       ...+.||++|++++. ++|.+.++..|++|++|++|++|..+  ++++..+...+|+++.||+||++ |...+..++ +
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~  260 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P  260 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence             122789999988766 55888888889999999999999886  44433222357888999999974 443333432 2


Q ss_pred             cchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       345 ~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                       +++..+   .+. ...+..+.+..+.+++++
T Consensus       261 -~~~~~~---~l~-~~~~~~~~~v~l~~~~~~  287 (419)
T TIGR03467       261 -GEDLGA---LLT-ALGYSPITTVHLRLDRAV  287 (419)
T ss_pred             -CchHHH---HHh-hcCCcceEEEEEEeCCCc
Confidence             111221   222 123455667777789887

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.79  E-value=1.9e-18  Score=173.68  Aligned_cols=152  Identities=25%  Similarity=0.286  Sum_probs=95.1

Q ss_pred             cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC--CCCCCCCcccch
Q 009881          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ  347 (523)
Q Consensus       270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~--~~~~~l~~~~~~  347 (523)
                      ++.||+||+|+++.++++.+..+|++|.+++.|++|..|  +|+++||+++||++++++.||.|..  .++.+|+ + ..
T Consensus       255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p-~e  330 (561)
T KOG4254|consen  255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-P-GE  330 (561)
T ss_pred             cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-C-Cc
Confidence            367999999999999999999999999999999999998  7999999999999999999997644  3333443 1 12


Q ss_pred             hhhhhh--hhcccCCCcc--eEEEEEEEecCCCCCCCCc-e--------------EEEcCCCCCCCCCCceEEEEEeCCC
Q 009881          348 QLQESF--QAFSLSDNKG--KVARGICITRSSLKPDLSN-F--------------LVIFPPRSLFPEQVTSIRVLQLGGN  408 (523)
Q Consensus       348 ~l~~~~--~~l~~~~~~~--~v~r~i~i~~~~l~~~~~~-~--------------~~~~p~~~~~~~~~~~v~v~~~s~~  408 (523)
                      .+|++.  +++....+..  +..--++.-...-.+-++. .              .+.-|...+. ...+.|++...|+-
T Consensus       331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~-s~~pvI~~siPS~l  409 (561)
T KOG4254|consen  331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLA-SHRPVIELSIPSSL  409 (561)
T ss_pred             cCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhccc-ccCCeEEEeccccc
Confidence            245442  1121111111  1111111111110111111 0              1111111111 12456777777765


Q ss_pred             C-CcCCCCcEEEEEEEeec
Q 009881          409 L-AVCPLGMFVLYFSALCD  426 (523)
Q Consensus       409 ~-~~cP~G~~vi~~st~~~  426 (523)
                      + ..+|+|+.||++-+...
T Consensus       410 Dptlappg~Hvl~lf~~~t  428 (561)
T KOG4254|consen  410 DPTLAPPGKHVLHLFTQYT  428 (561)
T ss_pred             CCCcCCCCceEEEEeccCC
Confidence            4 78999999999988654

>PLN02676 polyamine oxidase

Probab=99.78  E-value=2.1e-17  Score=177.25  Aligned_cols=286  Identities=11%  Similarity=0.083  Sum_probs=161.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (523)
                      .+..+||||||+|++||+||..|++.|. +|+|+|+++++||++.+.+.+                              
T Consensus        23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~------------------------------   72 (487)
T PLN02676         23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA------------------------------   72 (487)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC------------------------------
Confidence            3457899999999999999999999998 699999999999999986532                              


Q ss_pred             ccccccCCCceEEecCCCeEEec-----ChHHHHHHhcCCccccc-ccccccceeeeccCCceeecCCCHHHHHhcccCC
Q 009881           98 SRLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG  171 (523)
Q Consensus        98 ~~~~~~~~r~f~ldl~GP~ll~~-----~~~lv~lL~~~~~~~yl-ef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls  171 (523)
                               ++.+|+ |++++..     ...+.+++.+.|+..+. .+... ...++..+|+.+  +.   +...     
T Consensus        73 ---------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~-----  131 (487)
T PLN02676         73 ---------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ-----  131 (487)
T ss_pred             ---------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH-----
Confidence                     234566 4777642     34677888888876542 22221 222333355443  11   1100     


Q ss_pred             hHhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881          172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (523)
Q Consensus       172 ~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~efl~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (523)
                       .-.+.+.++.+++.......    .    ..++.+.++  .+++.+.. ....... ..+......+..++  ..+|+.
T Consensus       132 -~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~  199 (487)
T PLN02676        132 -KSMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLK  199 (487)
T ss_pred             -HHHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchh
Confidence             00111112222221221100    0    012334555  33344322 2221111 11111101011111  123332


Q ss_pred             HHHHHHHHHHHhhhcccCCCccEEee--cCCcChHHHHHHHHHHH------cCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 009881          249 DGINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (523)
Q Consensus       249 ~~l~~~~~~l~s~g~~g~~~~~~~~p--~gG~~eL~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~  320 (523)
                      ..+.     ......+|.   .-.+.  ++|++.|+++|++....      .++.|+||++|++|..+  ++. +.|.+.
T Consensus       200 ~~~~-----~~~~~~~g~---~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~  268 (487)
T PLN02676        200 NTEP-----NPTFVDFGE---DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTE  268 (487)
T ss_pred             hcCc-----ccccccCCC---ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEEC
Confidence            2110     001111221   12233  68999999988875422      23689999999999876  333 568888


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                      +|++++||+||+. |...+.+..+.++|+||+.+....++..++.+.|.++.+++||=+
T Consensus       269 ~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~  327 (487)
T PLN02676        269 DGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP  327 (487)
T ss_pred             CCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence            9999999999964 444333312467888988776655555678899999999998643

>PLN02529 lysine-specific histone demethylase 1

Probab=99.77  E-value=2.9e-16  Score=173.54  Aligned_cols=279  Identities=13%  Similarity=0.104  Sum_probs=163.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ...||+|||+|++||.||..|+++|++|+++|+++++||++.|..+.+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            467999999999999999999999999999999999999999876421                                


Q ss_pred             cccCCCceEEecCCCeEEecCh--HHHHHHhcCCcccccccccccce-eeeccCCceeecCCCHHHHHhcccCChHhHHH
Q 009881          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~~--~lv~lL~~~~~~~ylef~~~~~~-~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~  177 (523)
                         ....+.+|+ |+++++...  ++..+..+.++.-+    .++.. .++..+|+.......  .     .+    ...
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~-----~~----~~~  267 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--S-----NI----EFI  267 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--h-----hH----HHH
Confidence               001246787 688886533  45556656665332    11121 133345543311110  0     00    011


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhccCCCcchhhhhcchHHHH
Q 009881          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (523)
Q Consensus       178 L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~------l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l  251 (523)
                      +.+++..+..+.....         ....+.|+.+|+++..      +++..+.++.+.++...+....+   ++.    
T Consensus       268 ~~~~l~~~~~l~~~~~---------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~----  331 (738)
T PLN02529        268 FNKLLDKVTELRQIMG---------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSD----  331 (738)
T ss_pred             HHHHHHHHHHHHHhcc---------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHH----
Confidence            2222222222211000         1245688999997543      55555555443222111111100   111    


Q ss_pred             HHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009881          252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (523)
Q Consensus       252 ~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI  331 (523)
                      ..+..+....+ +. ..|....+.||++.|+++|++     +..|+||++|++|..+  ++. +.|. .+++++.||+||
T Consensus       332 LSl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VI  400 (738)
T PLN02529        332 LSAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVL  400 (738)
T ss_pred             hhhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEE
Confidence            11122222111 11 113356789999999998875     3359999999999886  333 4565 356789999999


Q ss_pred             EC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                      +. |...+....+.+.|++|+.+....++..++.+.+.++.+++++-
T Consensus       401 VTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW  447 (738)
T PLN02529        401 CTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW  447 (738)
T ss_pred             ECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence            75 43333322234677788766665555567889999999999863

>PLN02568 polyamine oxidase

Probab=99.74  E-value=2.6e-16  Score=170.25  Aligned_cols=298  Identities=10%  Similarity=0.062  Sum_probs=161.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccce
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE   92 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G-----~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (523)
                      +++..+||||||+|++||+||..|++.|     ++|+|+|+++++||+++++++.                         
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~-------------------------   55 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG-------------------------   55 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence            3456689999999999999999999988     9999999999999999997542                         


Q ss_pred             eccccccccccCCCceEEecCCCeEEec--ChHHHHHHhcCCccccc-cccccc----ceeeeccCCceeecCCCHHHHH
Q 009881           93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSID----ATFMLDADAKLCSVPDSRAAIF  165 (523)
Q Consensus        93 ~~~~~~~~~~~~~r~f~ldl~GP~ll~~--~~~lv~lL~~~~~~~yl-ef~~~~----~~~~~~~dg~~~~vP~s~~~if  165 (523)
                                    .|.+|+ |+++++.  ...+.+++.+.|+.... .|...+    ....+..+|..  ++.   ++.
T Consensus        56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~  115 (539)
T PLN02568         56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFE--VDP---SIV  115 (539)
T ss_pred             --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcC--CCH---HHH
Confidence                          245666 5777753  34777888888875432 222111    11122223321  111   111


Q ss_pred             hcccCChHhHHHHHHHHHHHHhhcccCccc-----ccccc-cc---ccccCCcHHHHHHh-cCCChhHHHHHHHHHhccC
Q 009881          166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESE-----ENNVR-IS---EEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMAD  235 (523)
Q Consensus       166 ~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~-----~~~~~-~~---~~~~~~s~~efl~~-~~l~~~l~~~l~~~i~l~~  235 (523)
                      .      .-.+.+..++..+........+.     ..... ..   ....+.++.+||++ ++  ..+.....-.+ ...
T Consensus       116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~--~~~~~~~~p~~-~~~  186 (539)
T PLN02568        116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGLD--AYWDSVSADEQ-IKG  186 (539)
T ss_pred             H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHHH--HHHhhcccchh-hcc
Confidence            0      00111222232222110000000     00000 00   00123588888874 21  00000000000 000


Q ss_pred             CCcchhhhhcchHHHHHHHHHHHH-----------hh---hcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCc
Q 009881          236 YDQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP  301 (523)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~~~~~l~-----------s~---g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~  301 (523)
                      +..+.  .+.+....+..+..+..           +.   ..+...+|.++...+|++.|+++|++.+  .++.|+++++
T Consensus       187 ~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~  262 (539)
T PLN02568        187 YGGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRK  262 (539)
T ss_pred             ccchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCe
Confidence            00000  00011111111111100           00   1111112346688999999999988744  3678999999


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----cccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       302 V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~----~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      |++|..+  ++. +.|++++|+++.||+||+. |...+.+-.    +.++|+||+.+....+...++.+.|.++.+++++
T Consensus       263 V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f  339 (539)
T PLN02568        263 VTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP  339 (539)
T ss_pred             EEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence            9999876  333 5677889999999999974 443333210    2467788887665545555788999999999985

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.74  E-value=2.4e-16  Score=174.94  Aligned_cols=279  Identities=12%  Similarity=0.106  Sum_probs=161.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ...||||||||++||+||..|++.|++|+|+|+++++||+..++.+.+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            4589999999999999999999999999999999999999999876431                               


Q ss_pred             cccCCCceEEecCCCeEEecC--hHHHHHHhcCCccccccccccccee-eeccCCceee--cCCCHHHHHhcccCChHhH
Q 009881          101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCS--VPDSRAAIFKDKSLGLMEK  175 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~--~~lv~lL~~~~~~~ylef~~~~~~~-~~~~dg~~~~--vP~s~~~if~~~~ls~~~k  175 (523)
                          .-.+.+|+ |++++...  ..+..++...|+..+    .+...+ ++..+|+...  ++...             .
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~~~v-------------~  343 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEIDSKI-------------E  343 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhhhhH-------------H
Confidence                01234566 57887543  256666777776432    111111 2233555331  11110             1


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhccCCCcchhhhhcchHH
Q 009881          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (523)
Q Consensus       176 ~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~------~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~  249 (523)
                      ..+.+++..+.++.....   .    .....+.++.+|++++      ..++..+.++.+.++...+....      ...
T Consensus       344 ~~f~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls  410 (808)
T PLN02328        344 ASFNKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMS  410 (808)
T ss_pred             HHHHHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHH
Confidence            223333333322211000   0    0112457888888743      23444334332222211111100      011


Q ss_pred             HHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009881          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (523)
Q Consensus       250 ~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~  329 (523)
                      .+. +..+.... .+ ...+.+.+..||++.|+++|++..   +  |+++++|++|..+  ++. +.| +.+|++++||+
T Consensus       411 ~LS-l~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~  478 (808)
T PLN02328        411 NLS-MAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDM  478 (808)
T ss_pred             HHH-hhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCE
Confidence            111 11111110 11 111235677899999999987643   3  8999999999886  333 345 45788999999


Q ss_pred             EEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                      ||+. |...+....+.+.|++|..+....++..++.+.|.++.+++++=
T Consensus       479 VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW  527 (808)
T PLN02328        479 VLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW  527 (808)
T ss_pred             EEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            9975 44433321224667788766655455568889999999999863

>PLN03000 amine oxidase

Probab=99.71  E-value=5.5e-15  Score=164.12  Aligned_cols=281  Identities=13%  Similarity=0.093  Sum_probs=158.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ...||||||+|++||.+|..|++.|++|+|+|+++++||++.|..+++                                
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g--------------------------------  230 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA--------------------------------  230 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence            468999999999999999999999999999999999999999986542                                


Q ss_pred             cccCCCceEEecCCCeEEecCh--HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~~--~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                         ....+.+|+ |.++++...  .+..++.+.|+..+ .+.....  ++..+|+..  |......         ....+
T Consensus       231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~---------ve~~f  292 (881)
T PLN03000        231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLK---------VEVAF  292 (881)
T ss_pred             ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhh---------HHHHH
Confidence               012366788 588886544  45556667776532 2222222  233366543  2211100         00112


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~------~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~  252 (523)
                      .+++..+.++.....         ....+.++.++++.      ..+.+..+.++.+.++...+....      ....+.
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as------~ls~LS  357 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG------LVSKLS  357 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc------CHHHHH
Confidence            222222221111000         00113344443321      122332223222111111111000      001111


Q ss_pred             HHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       253 ~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                       +..+..... +.. .+......||++.|+++|++.+     .|+|+++|++|..+  ++. +.|++ +++++.||+||+
T Consensus       358 -l~~wdqd~~-~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv  425 (881)
T PLN03000        358 -LAFWDQDDP-YDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC  425 (881)
T ss_pred             -HHHhhhccc-ccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence             111111111 111 1235567899999999998644     39999999999876  333 45654 456899999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                      . |...+..-.+.+.|+||+.+....++..++.+.|.++.++++|=.
T Consensus       426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~  472 (881)
T PLN03000        426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS  472 (881)
T ss_pred             cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence            5 544434212357788888777655666688999999999998643

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.71  E-value=1e-16  Score=163.54  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009881          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (523)
Q Consensus       271 ~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l  349 (523)
                      .+.+.|||+.|++||.   .++|..|.++++|.+|.+++ +|  +.|+..+.++..+|.+|+. |...+..  +.++|.+
T Consensus       201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l  272 (450)
T COG1231         201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLL  272 (450)
T ss_pred             hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhh--cccCCCC
Confidence            4567799999999887   57899999999999998862 43  5777666578999999975 3333333  2456666


Q ss_pred             hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       350 ~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                      +..+++......++...|..+-+++||=
T Consensus       273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW  300 (450)
T COG1231         273 PAEYKQAAKGVPYGSATKIGVAFSRPFW  300 (450)
T ss_pred             CHHHHHHhcCcCcchheeeeeecCchhh
Confidence            6666666556678888888888999973

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.67  E-value=1.3e-14  Score=154.84  Aligned_cols=244  Identities=12%  Similarity=0.170  Sum_probs=148.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCcccccee
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (523)
                      -++...+|+|||||++||+||++|++.    |++|+|+|+++++||++.++....                         
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-------------------------   72 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-------------------------   72 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence            344567999999999999999999996    689999999999999998864321                         


Q ss_pred             ccccccccccCCCceEEecCCCeEEecChHHHHHHhcC------C---ccccccccccccee----eeccCCceeecCCC
Q 009881           94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPDS  160 (523)
Q Consensus        94 ~~~~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~------~---~~~ylef~~~~~~~----~~~~dg~~~~vP~s  160 (523)
                                  .+|.++. ||.+...-..+.++|.+.      |   .++|..|...++.+    ++..+|.....+  
T Consensus        73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~--  137 (576)
T PRK13977         73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD--  137 (576)
T ss_pred             ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence                        2344444 455432233555665332      1   23555665554442    111123222211  


Q ss_pred             HHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcch
Q 009881          161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (523)
Q Consensus       161 ~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~  240 (523)
                            .-.++.+.+..|++++-   ..             .++..+.++.||+++..+......+   ...+..+  . 
T Consensus       138 ------~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~---w~t~FaF--~-  189 (576)
T PRK13977        138 ------KFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYY---WRTMFAF--E-  189 (576)
T ss_pred             ------CCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHH---HHHHHCC--c-
Confidence                  01233333333444321   11             1234568999999975554332222   2222222  1 


Q ss_pred             hhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC--CcEEEE
Q 009881          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV  317 (523)
Q Consensus       241 ~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~--g~~~gV  317 (523)
                        +..|+.+....+.+|+.-+.+.+.. .++.+.+|-. ..|.+.|.+.++..|++++++++|++|..+.++  +++++|
T Consensus       190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI  266 (576)
T PRK13977        190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI  266 (576)
T ss_pred             --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence              2357888777777777665554432 2255566653 589999999999999999999999999875223  678888


Q ss_pred             EeC-CCc--E---EEcCEEEE
Q 009881          318 RLA-SGQ--D---ILSHKLVL  332 (523)
Q Consensus       318 ~l~-~G~--~---i~A~~VI~  332 (523)
                      .+. +|+  +   ..+|.||+
T Consensus       267 ~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        267 HLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEeCCceeEEEecCCCEEEE
Confidence            774 332  2   35777874

>PLN02976 amine oxidase

Probab=99.59  E-value=9.7e-14  Score=158.30  Aligned_cols=104  Identities=11%  Similarity=0.001  Sum_probs=75.5

Q ss_pred             cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009881          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (523)
Q Consensus       270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l  341 (523)
                      ..+.++||++.|+++|++..     .|+||++|++|.....       ++.-+.|.+.+|+++.||+||+. |-..+..-
T Consensus       927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976        927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred             ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence            35678999999999887643     3999999999987310       11225677889999999999975 43333311


Q ss_pred             CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                      .+.+.|+||+.+....++..++.+.|.++.++++|-+
T Consensus      1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976       1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred             ccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence            1357888998766654555678899999999998644

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.57  E-value=8.6e-13  Score=132.86  Aligned_cols=245  Identities=18%  Similarity=0.226  Sum_probs=149.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEE--eccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~Vlv--lE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      ..+|+|+|||++||++|++|+|.+-+|++  +|+.+|+||...|..-+                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            47999999999999999999999987654  99999999999882211                                


Q ss_pred             ccccCCCceEEecCCCeEEecCh----HHHHHHhcCCccccc-ccccccc----eeeeccCCceeecCCCHHH-HHhccc
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAA-IFKDKS  169 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~~----~lv~lL~~~~~~~yl-ef~~~~~----~~~~~~dg~~~~vP~s~~~-if~~~~  169 (523)
                            +.|-++. ||.-+-..+    ...+++.++|+++-+ .+..-..    .+++ +.|++..+|.+... ++.  .
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~--~  128 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF--S  128 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc--c
Confidence                  2222333 455443333    367788888886432 2221111    3343 47899999987544 221  2


Q ss_pred             CChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881          170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (523)
Q Consensus       170 ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (523)
                      +.+.-|..+..|+....+...           ..+..|+++.+|.++ |+  +++.+.++.++.-+.|..|+  .++|.+
T Consensus       129 l~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk  193 (491)
T KOG1276|consen  129 LQPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMK  193 (491)
T ss_pred             cCcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHH
Confidence            233445455555542211100           123457899999984 65  66666666555555566676  447777


Q ss_pred             HHHHHHHHHHHhhh---------cccC----------------CCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCcee
Q 009881          249 DGINRLALYNSSIG---------RFQN----------------ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI  303 (523)
Q Consensus       249 ~~l~~~~~~l~s~g---------~~g~----------------~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~  303 (523)
                      ..+..+..--...|         .++.                ..-+.+-.+||...++++++......+..+.++-++.
T Consensus       194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~  273 (491)
T KOG1276|consen  194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS  273 (491)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence            66655443222221         0110                0001234588899999999998888888888888888


Q ss_pred             EEEEecCCCcEEEEEeCCCc
Q 009881          304 SLLTDQNSGSYKGVRLASGQ  323 (523)
Q Consensus       304 ~I~~~~~~g~~~gV~l~~G~  323 (523)
                      .+.....++-..+.+..+++
T Consensus       274 ~~sk~~~~~~~~tl~~~~~~  293 (491)
T KOG1276|consen  274 GNSKSRSGNWSLTLVDHSGT  293 (491)
T ss_pred             cccccccCCceeEeEcCCCc
Confidence            87654323333455555565

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.57  E-value=6.1e-14  Score=149.60  Aligned_cols=111  Identities=16%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009881          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ  350 (523)
Q Consensus       272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~  350 (523)
                      ....+|...+.++++.     |..|+++..|.+|.... ++. +.|+..++..+.+|+||+. |-..+..-.+.+.|++|
T Consensus       212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            3567888888876654     99999999999999873 443 3455566666999998853 33332321246778888


Q ss_pred             hhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCC
Q 009881          351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP  389 (523)
Q Consensus       351 ~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~  389 (523)
                      ..++...++-..+.+.+.++.+++.+=..........+.
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~  323 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE  323 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence            877776555556778899988898764322234445553

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.54  E-value=6.9e-14  Score=146.85  Aligned_cols=157  Identities=16%  Similarity=0.109  Sum_probs=87.0

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhc
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF  356 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l  356 (523)
                      .+.+.+.+...+...|++|++|++|++|..+  +++ +.|.+.+|+++.||+||++ |...+.+  +...++++......
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGG-VTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSE-EEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--ccc-cccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence            4444555556667789999999999999987  555 4677899999999999975 3333222  12344555533332


Q ss_pred             ccCCCcceEEEEEEEecCCCCCCC-CceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEE-eec---cccch
Q 009881          357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG  431 (523)
Q Consensus       357 ~~~~~~~~v~r~i~i~~~~l~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st-~~~---~~~~~  431 (523)
                      .+...+..+.+..+.+++++.+.. ....++.++..     ....++...+...+. +.+..+..... ...   .....
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  356 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF-----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD  356 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST-----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred             ccccccCcceeEEEeeecccccccccccceecccCc-----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence            233335566777777888865443 23333333321     223445555544444 44433333322 111   12233


Q ss_pred             HHHHHHHHHHHHhh
Q 009881          432 KKLLHAALSALQKL  445 (523)
Q Consensus       432 ~~~l~~~~~~l~~~  445 (523)
                      ++.++.+++.|-..
T Consensus       357 e~~~~~~~~~L~~~  370 (450)
T PF01593_consen  357 EEILERVLDDLRKI  370 (450)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhc
Confidence            45566665555543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.50  E-value=2.2e-12  Score=126.64  Aligned_cols=294  Identities=16%  Similarity=0.137  Sum_probs=160.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ...+|.|||+|++||+||..|++. .+|+++|++++.||+.+|...+-                                
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------   53 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------   53 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--------------------------------
Confidence            346899999999999999999875 68999999999999999975321                                


Q ss_pred             cccCCCceEEecCCCeEEecC---hHHHHHHhcCCcccccccccccceeeeccCCcee-ecCCCHHHHHhc--ccCChHh
Q 009881          101 LSQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC-SVPDSRAAIFKD--KSLGLME  174 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~---~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~-~vP~s~~~if~~--~~ls~~~  174 (523)
                         ...++.+|. | .++|..   -.+..++...|+.....|.+..-  .++ +|.+. .--.....+|..  ..+.+  
T Consensus        54 ---d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p--  123 (447)
T COG2907          54 ---DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP--  123 (447)
T ss_pred             ---cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch--
Confidence               011233444 2 333322   26788888888876655544321  112 23221 110111123321  11122  


Q ss_pred             HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHH
Q 009881          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL  254 (523)
Q Consensus       175 k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~  254 (523)
                        ++.++++.+.........   ..+ .....+.++.+||++.+.+...++-.++-++-..++...  ..++...+ ..+
T Consensus       124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa-~~~  194 (447)
T COG2907         124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPL--ADASRYPA-CNF  194 (447)
T ss_pred             --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcH--hhhhhhhH-HHH
Confidence              222222222221111000   011 123456899999999999988776555432221122110  01111111 223


Q ss_pred             HHHHHhhhcccCCCccEEe-ecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-
Q 009881          255 ALYNSSIGRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-  332 (523)
Q Consensus       255 ~~~l~s~g~~g~~~~~~~~-p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-  332 (523)
                      ..|..-.|..--...+.++ ..||+.+-.|   |+++..+|.+.++++|.+|..-. +|+  .|...+|++-+.|.||+ 
T Consensus       195 ~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vViA  268 (447)
T COG2907         195 LVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVIA  268 (447)
T ss_pred             HHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeeee
Confidence            3444433322111122444 5678888888   55678899999999999998753 553  34446799888899884 


Q ss_pred             -CCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       333 -~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                       .|+..+. ++.  + +-|++.+.+..  ...+-.+++.-+|..+.|
T Consensus       269 th~dqAl~-mL~--e-~sp~e~qll~a--~~Ys~n~aVlhtd~~lmP  309 (447)
T COG2907         269 THPDQALA-LLD--E-PSPEERQLLGA--LRYSANTAVLHTDASLMP  309 (447)
T ss_pred             cChHHHHH-hcC--C-CCHHHHHHHHh--hhhhhceeEEeecccccc
Confidence             4665532 221  2 22444443321  122345667777877665

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=2.6e-11  Score=126.42  Aligned_cols=249  Identities=18%  Similarity=0.183  Sum_probs=137.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (523)
                      .|+|+|||++||+||..|+++|++|+++|+++++||+++++.... ++|.+                             
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~E-----------------------------   51 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHVE-----------------------------   51 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCeee-----------------------------
Confidence            599999999999999999999999999999999999999987532 11111                             


Q ss_pred             CCCceEEecCCCeEEe-cChHHHHHHhcCCcccccccccccceeeec--cCCcee--ecCCC------HHHHHhcccCCh
Q 009881          104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL  172 (523)
Q Consensus       104 ~~r~f~ldl~GP~ll~-~~~~lv~lL~~~~~~~ylef~~~~~~~~~~--~dg~~~--~vP~s------~~~if~~~~ls~  172 (523)
                        .       |=++++ +--.++.+|.+.+.+..+..++....++-.  ..|.+-  ..|..      ..+.++.+.+..
T Consensus        52 --~-------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          52 --H-------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             --e-------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence              1       112221 223677777777776555555443333211  112111  11111      112333333333


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-H---HHHHHhccCCCcchhhhhcchH
Q 009881          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-I---VLYAIAMADYDQEVSEYVLKTR  248 (523)
Q Consensus       173 ~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~-~---l~~~i~l~~~~~~~~~~~~s~~  248 (523)
                      .+|..   |+-.+.....      .....+.+..+.+|.|||++++..+.... .   +.+++...  ..+    ..|++
T Consensus       123 ~~~~~---~~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~--~~e----~~sa~  187 (485)
T COG3349         123 REKIR---FVLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFI--DPE----GCSAR  187 (485)
T ss_pred             HHHhH---Hhhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhccc--Ccc----cCcch
Confidence            33332   2211110000      00122345677999999998776654322 2   22332221  222    24454


Q ss_pred             HHHHHHHHHHHhhhcccCCCccEEeecCCcC-hHHHHHHHHHHHcCcEEEcCCceeEEEEecC--CCcEEEEEeCCCcEE
Q 009881          249 DGINRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDI  325 (523)
Q Consensus       249 ~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i  325 (523)
                      ..+..+..++  +...+.  +.....+++.. -+.+...+...+.|.+++++.+|+.|..+..  +.+++|+.+. +...
T Consensus       188 ~~lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~  262 (485)
T COG3349         188 FFLTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQ  262 (485)
T ss_pred             hHHHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-Ccce
Confidence            4444333332  222221  11234667765 4557777888889999999999999987532  3446787765 5544


Q ss_pred             EcCEEE
Q 009881          326 LSHKLV  331 (523)
Q Consensus       326 ~A~~VI  331 (523)
                      .+...+
T Consensus       263 e~~~~~  268 (485)
T COG3349         263 EQQAAL  268 (485)
T ss_pred             Eeeehh
Confidence            444333

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.26  E-value=1.7e-10  Score=118.39  Aligned_cols=108  Identities=14%  Similarity=0.061  Sum_probs=71.0

Q ss_pred             EEeecCCcChHHHHHHHHHH----HcC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC-CCC-CC
Q 009881          271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT-VPG-SL  342 (523)
Q Consensus       271 ~~~p~gG~~eL~qal~r~~a----~~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~-~~~-l~  342 (523)
                      ..+-.-|..++...|.+...    ++|  ++++++++|..|..+. +++ +.|++.||+.+.||+||+.-+.- +.+ ..
T Consensus       215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~  292 (498)
T KOG0685|consen  215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH  292 (498)
T ss_pred             heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence            34445566666665554222    233  5666679999998762 455 57889999999999999753311 111 01


Q ss_pred             cccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC
Q 009881          343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (523)
Q Consensus       343 ~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~  380 (523)
                      .-+.|+||..+..-.++...+.+-|..+=++.|+-|..
T Consensus       293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~  330 (498)
T KOG0685|consen  293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD  330 (498)
T ss_pred             hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence            13778888877775555556778888888999876654

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.19  E-value=1.8e-10  Score=116.28  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             EEeec-CCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~-gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      -++|. .....|.+++.+.++..|++++++++|.+|..+  + ....|.+.+|++|+||.+|+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            36898 678999999999999999999999999999876  3 34678888898999999885

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.19  E-value=2.7e-10  Score=117.81  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +||+|||||++|+++|..|++.|++|+|+|+++++||.+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            799999999999999999999999999999999999987664

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.17  E-value=5.6e-11  Score=92.24  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             EECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc
Q 009881           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (523)
Q Consensus        27 IIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~   67 (523)
                      |||+|++||++|.+|+++|++|+|+|+++++||+++++..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~   41 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP   41 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence            89999999999999999999999999999999999997653

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.15  E-value=3.4e-10  Score=116.19  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.0

Q ss_pred             EEeecCC---cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG---~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +.+|.+|   ...+.++|.+.++..|++++.+++|++|..+  ++++.+|++.+|+ ++||+||+.
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            5678888   5799999999999999999999999999987  7777789998887 999999954

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.01  E-value=2.4e-09  Score=104.70  Aligned_cols=101  Identities=20%  Similarity=0.356  Sum_probs=71.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      .||.+|||+|++|++.|..|++.|++|+|+||++++||+|-+-..+.       .             .+.         
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-------t-------------GIl---------   51 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-------T-------------GIL---------   51 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-------C-------------CeE---------
Confidence            48999999999999999999999999999999999999998854321       0             011         


Q ss_pred             ccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHH
Q 009881          102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA  163 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~  163 (523)
                              +.--||++++..+.-|--.+    .++.||.......+-..+|..+.+|.....
T Consensus        52 --------vHkYGpHIFHT~~~~Vwdyv----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t  101 (374)
T COG0562          52 --------VHKYGPHIFHTDNKRVWDYV----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT  101 (374)
T ss_pred             --------EeeccCceeecCchHHHHHH----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence                    11127999988774433321    345566654433322238999999987643

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.97  E-value=2.4e-09  Score=112.15  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             EEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .+||.-. ...+.++|.+.+...|++++++++|++|..+  ++++..|++++++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            4689875 5799999999999999999999999999887  6677889877888999999995

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.91  E-value=1.2e-08  Score=106.26  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=50.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~A~~VI~~  333 (523)
                      .+.|.+|.   ++++.+|...+...|+.++||++|+.|.... +| .+.+.+.+|++ ++|+.||..
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~  206 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA  206 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence            55677773   6899999999999999999999999998873 43 45666788887 999999954

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.91  E-value=2.4e-08  Score=104.79  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +++|..|.   ..+.++|.+.+...|++++++++|.+|..+  +++ +.|++.+| +++||+||+.
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A  199 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC  199 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence            55677774   688999999999999999999999999765  444 46777665 7999999853

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.90  E-value=8.5e-08  Score=102.85  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=45.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.|..|.   ..+.++|.+.+...|++|+.+++|.+|..   ++ .+.|++.+| +++|++||+.
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A  232 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA  232 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence            55677774   48899999999999999999999999863   22 256776666 6999998853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.85  E-value=9.2e-08  Score=99.71  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=44.8

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ++.|.+|.   ..+.++|.+.++..|++++.+++|++|..+  +++ +.|++++| +++||+||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            44566664   478899999888999999999999999765  444 45776555 799998874

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.80  E-value=1.9e-07  Score=100.40  Aligned_cols=59  Identities=29%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             eecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 009881          273 YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD  333 (523)
Q Consensus       273 ~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~A~~VI~~  333 (523)
                      ++.+|...+.+.|.+.++..|++++++++|++|..+  ++++++|+..  +|  ..++|+.||+.
T Consensus       125 ~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA  187 (466)
T PRK08274        125 FFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA  187 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence            344555688999999999999999999999999876  6788888763  33  35899999853

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.77  E-value=2.7e-07  Score=97.56  Aligned_cols=61  Identities=25%  Similarity=0.322  Sum_probs=48.0

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+|..|.   ..+.++|.+.+...|++|+.+++|++|..+  ++++++|++. +.+++||+||+.
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~a  252 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVVA  252 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEEC
Confidence            355677664   378899999999999999999999999875  5566677765 457999999853

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.76  E-value=1.4e-07  Score=103.12  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 009881          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (523)
Q Consensus       270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~A~~VI~  332 (523)
                      ++.+|. |.   ..+..++++.+..+|++++.+++|++|..+  ++++++|++.   +|  .+|+|++||.
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn  205 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN  205 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence            366774 53   478888889889999999999999999876  6777788752   33  3689999884

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.72  E-value=7.8e-07  Score=97.47  Aligned_cols=45  Identities=29%  Similarity=0.482  Sum_probs=40.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+.++||||||+| +|++||+.++++|.+|+||||.+.+||.+..
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~   56 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence            44558999999999 8999999999999999999999999997763

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.69  E-value=1.8e-07  Score=97.47  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .+.|..|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++.+| +++||+||.
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV  198 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence            44566664   467788888888899999999999999875  443 56777666 799999884

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.66  E-value=6e-07  Score=94.65  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+..|.   ..+.++|++.+...|++++.+++|++|..+. ++++++|++.+| +++|++||+.
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g-~i~a~~vVva  235 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRG-FIGAKKVGVA  235 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCc-eEECCEEEEC
Confidence            43455554   3677888888999999999999999997541 466677887666 6999988754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.64  E-value=5e-07  Score=101.28  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      +++|..|.   ..+.+++.+.+.. |++++.+++|++|..+  ++. +.|++.+|+.++|++||+
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~ad~VV~  457 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDG-WQLDFAGGTLASAPVVVL  457 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCE-EEEEECCCcEEECCEEEE
Confidence            56787774   4888999998888 9999999999999875  454 457777787788999885

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.63  E-value=2.4e-08  Score=93.55  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||+|||+|.+||+||++|+++|+||+++|++..+||..+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            4699999999999999999999999999999999999987643

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.60  E-value=3.2e-08  Score=92.18  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+-||||||+|.+||+||++|+++|.||+++|++.++||-.+
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            467999999999999999999999999999999999988654

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.58  E-value=1.7e-06  Score=92.99  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             EEeecCC-c---ChHHHHHHHHHHH----cC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG-~---~eL~qal~r~~a~----~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .+.|..| .   +.++++|.+.++.    .|  ++++++++|+.|..+  ++..+.|++.+| +++||+||+.
T Consensus       199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva  268 (497)
T PTZ00383        199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS  268 (497)
T ss_pred             EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence            5567553 3   5899999999888    77  678999999999875  455677887666 6999998864

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.51  E-value=2.9e-06  Score=83.96  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCC
Q 009881          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFT  337 (523)
Q Consensus       281 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~  337 (523)
                      -..+|...++.+|++++-|..|..+....+++..++|++++|..+.|+++|+ ...|+
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            3466778888999999999999999865557777899999999999999885 34454

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.50  E-value=1.7e-06  Score=92.13  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +.+.++||+|||||++|+-+|+.++.+|++|+++|++|.-.|-.+..
T Consensus         8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs   54 (532)
T COG0578           8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS   54 (532)
T ss_pred             ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence            44578999999999999999999999999999999999987765543

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.47  E-value=1.4e-07  Score=99.12  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||||++|++||+.|+++|.+|+++|+++.+|.+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            5699999999999999999999999999999999999997765

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.44  E-value=2.1e-07  Score=91.62  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||+|||+|.+||+||++|+++|++|+++||+..+||..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            46999999999999999999999999999999999998763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.42  E-value=2.5e-07  Score=98.27  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .+|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999988764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.41  E-value=2.7e-07  Score=91.07  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||+|||+|++|++||+.|+++|++|+++|++..+||..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            46899999999999999999999999999999999998854

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.40  E-value=1.3e-05  Score=84.13  Aligned_cols=241  Identities=12%  Similarity=0.161  Sum_probs=125.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (523)
                      +.++-|||+|+++|+||+.|-|.    |.+|.+||+.+..||........+ ..|+..++-..                 
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~-~GYv~RgGR~~-----------------   63 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE-NGYVIRGGRMM-----------------   63 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC-CCeeecCCccc-----------------
Confidence            35788999999999999999886    569999999999999987654221 12333322100                 


Q ss_pred             ccccccCCCceEEecCCCeEEecChHHHHHHhc------CC---ccccccccccccee----eeccCCceeecCCCHHHH
Q 009881           98 SRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLK------SG---ASHYLEFKSIDATF----MLDADAKLCSVPDSRAAI  164 (523)
Q Consensus        98 ~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~------~~---~~~ylef~~~~~~~----~~~~dg~~~~vP~s~~~i  164 (523)
                                          -..-..+.++|..      -+   .+.+.+|..-++.+    +...+|+....       
T Consensus        64 --------------------~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~-------  116 (500)
T PF06100_consen   64 --------------------EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT-------  116 (500)
T ss_pred             --------------------cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc-------
Confidence                                0000111222110      00   01111221111111    11112322111       


Q ss_pred             HhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhh
Q 009881          165 FKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYV  244 (523)
Q Consensus       165 f~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~  244 (523)
                      ...-.|+.+++..|+|++-.   ..             +...+.++.||+..-.+.-   +|..+.-.+.  ..++   .
T Consensus       117 ~~~~~Ls~k~r~eL~kL~l~---~E-------------~~L~~~~I~d~F~~~FF~S---nFW~~W~T~F--AFqp---W  172 (500)
T PF06100_consen  117 DSKFGLSEKDRMELIKLLLT---PE-------------EDLGDKRIEDWFSESFFES---NFWYMWSTMF--AFQP---W  172 (500)
T ss_pred             cCcCCCCHHHHHHHHHHhcC---CH-------------HHhCcccHHHhcchhhhcC---chhHhHHHhh--ccCc---c
Confidence            11124556666667776531   10             1223455666665321111   1222111121  1121   1


Q ss_pred             cchHHHHHHHHHHHHhhhcccCCCccEEeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCC--cEEEEEe-C
Q 009881          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-A  320 (523)
Q Consensus       245 ~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g--~~~gV~l-~  320 (523)
                      -|+.+.-..+.+|+.-+.++.. ..++.+.+|-. ..|..-|.+-.+..|+++++|+.|+.|..+.+++  .+.++.+ .
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~-l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~  251 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLND-LSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ  251 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCC-ccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc
Confidence            2455554556666655544332 12356677764 5899999999999999999999999998864333  2334444 4


Q ss_pred             CCcE--E---EcCEEEE
Q 009881          321 SGQD--I---LSHKLVL  332 (523)
Q Consensus       321 ~G~~--i---~A~~VI~  332 (523)
                      +|+.  |   .-|.|++
T Consensus       252 ~g~~~~i~l~~~DlV~v  268 (500)
T PF06100_consen  252 DGKEETIDLGPDDLVFV  268 (500)
T ss_pred             CCCeeEEEeCCCCEEEE
Confidence            5542  3   2466764

>PRK10015 oxidoreductase; Provisional

Probab=98.39  E-value=3.1e-07  Score=97.50  Aligned_cols=41  Identities=29%  Similarity=0.470  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +.+|||||||+|++|++||+.|+++|++|+++||++++|-.
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            35699999999999999999999999999999999887643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.38  E-value=3.3e-07  Score=87.93  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~   68 (523)
                      .+++|||+|++|++||..|+.+|++|+|+||..-+|||.+|-.+++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            3699999999999999999999999999999999999999977654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.32  E-value=5.4e-07  Score=96.68  Aligned_cols=46  Identities=24%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      .+..|||||||+|.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            3567999999999999999999999999999999999999987543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.32  E-value=6.2e-07  Score=94.71  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=39.3

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      |+.|.-.+..+||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            445555566799999999999999999999999999999998754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.30  E-value=5.7e-07  Score=96.62  Aligned_cols=44  Identities=18%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |.+|||||||+|.+|+.||.++++.|++|+++|+++.+||.|..
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN   44 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence            35699999999999999999999999999999998899998744

>PRK07121 hypothetical protein; Validated

Probab=98.29  E-value=1e-06  Score=95.29  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .++||||||+|.+|++||+.++++|.+|+||||+...||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            479999999999999999999999999999999999998653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.27  E-value=6.9e-07  Score=91.48  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ++||||||||++||++|+.|+|+|++|+|+|+++..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            479999999999999999999999999999998654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.26  E-value=8.6e-07  Score=94.76  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ...+|+|||||.+||+||..|.+.|.+|+++|+++.+||.|..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            3579999999999999999999999999999999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.26  E-value=7.2e-07  Score=94.74  Aligned_cols=40  Identities=30%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ||||||||.+|++||++++|+|.+|+++|+++.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.26  E-value=7.9e-07  Score=94.89  Aligned_cols=43  Identities=16%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~-~~GG~~~s   63 (523)
                      ++|||||||+|.+|+.||.+|++.|++|+++|+.+ .+||.|..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            56999999999999999999999999999999987 48998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.26  E-value=1e-06  Score=93.95  Aligned_cols=42  Identities=12%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .-+++...+|||||||||++|++||..|+++|++|+++|++.
T Consensus        31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            345577778999999999999999999999999999999975

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.24  E-value=1.2e-05  Score=85.67  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 009881          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~~i~A~~VI~  332 (523)
                      .++.+|...+.++|.+.++..|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            45666667899999999999999999999999998752246778887543 45799999985

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.23  E-value=1.2e-06  Score=93.34  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCcccccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s~~~~~   68 (523)
                      .++..||+|||||.+|+.+|.+|.++|.. +++|||++.+||.|+....++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            35679999999999999999999999999 999999999999998866544

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.23  E-value=1.2e-06  Score=87.57  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      |||+|||||++|+++|+.|++.|.+|+|+|++...+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.23  E-value=1.1e-06  Score=93.83  Aligned_cols=42  Identities=31%  Similarity=0.517  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC-CCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~-~GG~~~   62 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|+++. +||.|-
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            469999999999999999999999999999999875 799754

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.22  E-value=1.3e-06  Score=94.86  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +..|||||||||+.|+.+|+.|++.|++|+++||++..+|..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            356999999999999999999999999999999998877655

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.21  E-value=1.4e-06  Score=91.16  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=36.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      +++..+||||||+|++||++|+.|+++|.+|+|+|+++..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            3556799999999999999999999999999999998765

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.20  E-value=1.4e-06  Score=93.47  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |.+|||||||+|.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            3569999999999999999999999999999999 789998754

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.20  E-value=2.3e-06  Score=92.86  Aligned_cols=43  Identities=19%  Similarity=0.374  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +.++||||||+|.+|++||+.++++|.+|+||||....||...
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            3578999999999999999999999999999999999999643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.19  E-value=1.6e-06  Score=93.34  Aligned_cols=43  Identities=14%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            4699999999999999999999999999999999999997643

>PRK06116 glutathione reductase; Validated

Probab=98.17  E-value=1.5e-06  Score=92.91  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            4699999999999999999999999999999996 89997743

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.17  E-value=1.7e-06  Score=92.81  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .|||||||+|.+|+.||..|++.|++|+++|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            48999999999999999999999999999999 889998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.16  E-value=2.1e-06  Score=93.17  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ++.+|||||||||+.|+.+|+.|++.|.+|++|||++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            35669999999999999999999999999999999987655443

>PTZ00058 glutathione reductase; Provisional

Probab=98.16  E-value=2.3e-06  Score=93.55  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++.-...+|||||||+|.+|..||.++++.|++|+++|++ .+||.|-.
T Consensus        41 ~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         41 LKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             cccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            4443445799999999999999999999999999999996 79998754

>PRK06370 mercuric reductase; Validated

Probab=98.16  E-value=2.1e-06  Score=92.25  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   45 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN   45 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence            456799999999999999999999999999999986 67777654

>PRK08013 oxidoreductase; Provisional

Probab=98.15  E-value=2e-06  Score=90.61  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      |.++||+|||||++|+++|++|++.|++|+|+|+++..
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            34689999999999999999999999999999998753

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.15  E-value=2.3e-06  Score=90.35  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +||||||||+.|+++|+.|++.|++|+||||++..|+.++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            6999999999999999999999999999999997765443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.14  E-value=1.9e-06  Score=92.08  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +|||||||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            59999999999999999999999999999999 589998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.13  E-value=2.3e-06  Score=91.90  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|++. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            46999999999999999999999999999999987 9997754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.13  E-value=1.9e-06  Score=91.22  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=46.5

Q ss_pred             CcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (523)
Q Consensus       277 G~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~  332 (523)
                      +...+.+.|.+.++.+|++|+++++|++++++  +++++||...   +|+  +|+|+.||+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence            34689999999999999999999999999998  7899999875   455  478999885

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK09126 hypothetical protein; Provisional

Probab=98.13  E-value=2.3e-06  Score=89.62  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ++||||||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            689999999999999999999999999999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.12  E-value=1.8e-06  Score=81.68  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             EEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009881           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (523)
Q Consensus        26 IIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s   63 (523)
                      +|||||++||++|+.|.+.|.+ |+++|+++.+||.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999885

...

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.12  E-value=2.4e-06  Score=91.45  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~   42 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN   42 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence            599999999999999999999999999999995 68997753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.11  E-value=2.2e-06  Score=86.21  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~   61 (523)
                      ||+||||+|.+|+++|.+|+++| ++|+|||+..++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            79999999999999999999998 6999999988776655

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02463 lycopene beta cyclase

Probab=98.11  E-value=3.5e-06  Score=89.70  Aligned_cols=47  Identities=30%  Similarity=0.626  Sum_probs=40.3

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus         9 ~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...+|.+.+-....+||||||||++||++|+.|+++|++|+++|+++
T Consensus        15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            34555566656667999999999999999999999999999999975

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.11  E-value=2.6e-06  Score=89.12  Aligned_cols=35  Identities=20%  Similarity=0.437  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..+||+|||||++||++|++|++.|++|+++|+++
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            45899999999999999999999999999999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=3.1e-06  Score=91.15  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            4799999999999999999999999999999996 88998864

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.09  E-value=2.9e-06  Score=92.19  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG~   60 (523)
                      +.+|||||||||++|+.||++++|.|++|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45699999999999999999999999999999998 477763

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.09  E-value=3.3e-06  Score=88.61  Aligned_cols=51  Identities=16%  Similarity=0.169  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.++|.+.++..|.+++.++.|+++..+  ++. +.|++++|++++||.||.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEE
Confidence            467777878888889999999999999865  343 457778899999999984

>PRK07045 putative monooxygenase; Reviewed

Probab=98.09  E-value=3.1e-06  Score=88.71  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHH-HcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       280 eL~qal~r~~a-~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .|-+.|.+.++ ..|.++++++.|+.|..+. ++.++.|++++|++++||.||.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIg  159 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVG  159 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEE
Confidence            56666666654 3578999999999998752 5555678888999999999994

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.09  E-value=3.3e-06  Score=90.75  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|...
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            4699999999999999999999999999999985 788877543

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.09  E-value=3.6e-06  Score=88.28  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      |||||||||++|+++|..|++.|++|+++|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK14694 putative mercuric reductase; Provisional

Probab=98.09  E-value=3.4e-06  Score=90.76  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +..+|||||||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            456799999999999999999999999999999996 69998754

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.08  E-value=3.2e-06  Score=89.17  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      |..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            45689999999999999999999999999999996

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.08  E-value=3.3e-06  Score=88.55  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..++||||||||++|+++|+.|+++|++|+++|++.
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            456999999999999999999999999999999975

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.07  E-value=3.5e-06  Score=84.55  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |||||||+|++|+.+|..|++.|++|+++|+++ .||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13748 putative mercuric reductase; Provisional

Probab=98.07  E-value=3.4e-06  Score=92.83  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            5799999999999999999999999999999997 89998754

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.06  E-value=4e-06  Score=88.26  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +||||||||++|++||..|+++|++|+++|++...+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~   38 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP   38 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC
Confidence            69999999999999999999999999999998765433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN02661 Putative thiazole synthesis

Probab=98.06  E-value=3.8e-06  Score=85.45  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG   59 (523)
                      ++||+|||+|++|+.+|+.|+++ |++|+++|++..+||
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            58999999999999999999986 999999999999987

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.05  E-value=4e-06  Score=89.36  Aligned_cols=53  Identities=25%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~A~~VI~  332 (523)
                      .++.+.|.+.++..|.+++++++|++|+.++ ++++++|++.  +|+  .+.||.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence            4788999999999999999999999998863 5778887653  343  368899884

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.05  E-value=4.6e-06  Score=89.88  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEecc------CCCCCCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~------n~~~GG~~~s~   64 (523)
                      .+|||||||+|.+|+.||.+|++.|++|+++|+      +..+||.|...
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            469999999999999999999999999999998      46789987543

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.05  E-value=4.2e-06  Score=91.00  Aligned_cols=40  Identities=23%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+| +|++||+.++++|.+|+||||.+.+||..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            47899999999 99999999999999999999999999865

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.04  E-value=2.9e-06  Score=87.42  Aligned_cols=47  Identities=19%  Similarity=0.327  Sum_probs=42.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      .+-.-+++|||||++|++||+.|++.|++|.++||++.+||+.+.++
T Consensus       121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             HhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            33456899999999999999999999999999999999999988765

>PLN02697 lycopene epsilon cyclase

Probab=98.04  E-value=6.1e-06  Score=89.36  Aligned_cols=45  Identities=29%  Similarity=0.483  Sum_probs=37.3

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      |+++ .....+||||||+|++||++|++|++.|++|+++|+....+
T Consensus       100 ~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~  144 (529)
T PLN02697        100 PPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT  144 (529)
T ss_pred             CCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC
Confidence            3444 34456999999999999999999999999999999864443

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.04  E-value=4e-06  Score=87.39  Aligned_cols=51  Identities=24%  Similarity=0.191  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+-+.|.+.+...| ++++.++.|++|..+  ++. +.|++.+|+++.||.||.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVG  157 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEE
Confidence            467777878777777 899999999999765  444 467778999999999884

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.04  E-value=5.8e-06  Score=94.94  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+..||+|||||.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            35689999999999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.04  E-value=4.8e-06  Score=91.35  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--CCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~--~~GG~~~   62 (523)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||+..
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.04  E-value=4.7e-06  Score=87.24  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ||||||+|++|+++|+.|++.|++|+++|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999887764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.04  E-value=4.6e-06  Score=87.23  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      .+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5899999999999999999999999999999998753

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.03  E-value=4.7e-06  Score=87.45  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ...||+|||||++||++|..|+++|++|+|+||++..
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            3579999999999999999999999999999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.03  E-value=5.3e-06  Score=91.49  Aligned_cols=44  Identities=25%  Similarity=0.433  Sum_probs=40.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +..++||||||+|.+|++||+.++++|.+|+|+||....||...
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            44579999999999999999999999999999999999999764

>PRK07236 hypothetical protein; Provisional

Probab=98.03  E-value=5.1e-06  Score=87.02  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      |...||||||||++||++|..|++.|++|+|+|+++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5568999999999999999999999999999999864

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.02  E-value=4.7e-06  Score=83.68  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      .....||||||||.+|+++|++|+|.|++|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            446799999999999999999999999999999985

>PRK06184 hypothetical protein; Provisional

Probab=98.02  E-value=5.1e-06  Score=90.18  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      |+++||+|||||++||++|+.|++.|.+|+|+||++.+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            45789999999999999999999999999999998765

>PLN02985 squalene monooxygenase

Probab=98.01  E-value=7e-06  Score=89.06  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +......+||||||||++|+++|++|+++|++|+++||...
T Consensus        37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            34456678999999999999999999999999999999754

>PRK12831 putative oxidoreductase; Provisional

Probab=98.01  E-value=7.2e-06  Score=87.98  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=41.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +...+..||+|||+|.+||+||..|++.|++|+++|+++.+||.+.
T Consensus       135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            3445678999999999999999999999999999999999999874

>PRK06185 hypothetical protein; Provisional

Probab=98.00  E-value=5.9e-06  Score=87.08  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..++||+|||||++|+++|+.|+++|.+|+++|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3569999999999999999999999999999999863

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.00  E-value=6.9e-05  Score=80.19  Aligned_cols=58  Identities=31%  Similarity=0.421  Sum_probs=48.9

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI  331 (523)
                      .+.|.-|.   ..+.|++++.+...|+.|.-+++|++|.+.  +++..+|++.-|. |+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence            44577774   589999999999999999999999999987  5566799977665 8899988

>PRK14727 putative mercuric reductase; Provisional

Probab=97.99  E-value=5.5e-06  Score=89.35  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +..+||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            34689999999999999999999999999999999999998865

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.99  E-value=6.9e-06  Score=85.75  Aligned_cols=59  Identities=32%  Similarity=0.363  Sum_probs=46.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +.+|..|.   ..+.+++++.+...| ..+..+++|..+..+  . +.++|.+.+|. +.|++||+.
T Consensus       145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a  207 (387)
T COG0665         145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA  207 (387)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence            55677775   478899999999999 556669999998654  3 56788877777 999999964

>TIGR02053 MerA mercuric reductase

Probab=97.99  E-value=6e-06  Score=88.68  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |||||||+|.+|+.||.+|++.|++|+++|++. +||.|-.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            799999999999999999999999999999976 7887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.99  E-value=5.4e-06  Score=87.36  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~p  334 (523)
                      .+-++|.+.++..|.+++.++.|.++..+  ++. +.|++++|++++||.|| ++.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG  165 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG  165 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            56677777777789999999999999765  333 46777899999999999 444

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.99  E-value=7.5e-06  Score=80.76  Aligned_cols=43  Identities=35%  Similarity=0.479  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC--CCCCc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF   61 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~--~GG~~   61 (523)
                      ++.++||||||+|++||.||+.|+.+|++|+++|+...  +||.+
T Consensus         2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            35679999999999999999999999999999998753  56653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.99  E-value=6.1e-06  Score=87.17  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +...+|+|||||.+||++|+.|.+.|++|+++||.+.+||.|.--
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            345799999999999999999999999999999999999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.98  E-value=6.4e-06  Score=90.41  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..|||||||||.+|++||..|++.|++|+++|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            3599999999999999999999999999999996 68987653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.98  E-value=7.5e-06  Score=84.96  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +||||||+|+.|+++|+.|++.|++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06834 hypothetical protein; Provisional

Probab=97.97  E-value=7.7e-06  Score=88.31  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      |+++||||||+|++|+++|+.|++.|.+|+|+|+++.
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4679999999999999999999999999999999875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.97  E-value=6.7e-05  Score=80.24  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~  333 (523)
                      ..+-+-|.+.+...|.+++-++ |..+..+. +|.+++|++.+|++++||.|| ++
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS  207 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS  207 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence            5777888888999999998875 88887774 788889999999999999999 54

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.97  E-value=6.4e-06  Score=86.46  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .+||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.97  E-value=7.4e-06  Score=89.90  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|.+|++||+.|+++|++|+|||+++.+||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            47899999999999999999999999999999999999965

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.96  E-value=7e-06  Score=86.05  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCeEEEeccC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN   54 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~---G~~VlvlE~n   54 (523)
                      |..+||+|||||++|+++|+.|+|+   |.+|+|+|++
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4568999999999999999999998   9999999996

>PRK07190 hypothetical protein; Provisional

Probab=97.96  E-value=7.9e-06  Score=88.19  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=35.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      +..+||||||||++||++|+.|++.|.+|+++||++.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            45689999999999999999999999999999999875

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.95  E-value=8.8e-06  Score=89.91  Aligned_cols=45  Identities=24%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +|...++||||||+|.+||.||+.++++|.+|+||||+...||.+
T Consensus         7 ~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          7 SLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             CcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            566677999999999999999999999999999999998777744

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.95  E-value=7.1e-06  Score=85.62  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009881          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI-~~p  334 (523)
                      .++.+.|.+.+.. .|++++.++.|++|..+  ++. +.|++++|++++||.|| ++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence            4677888777777 49999999999999765  333 46777888899999988 444

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.94  E-value=9.2e-06  Score=90.23  Aligned_cols=54  Identities=28%  Similarity=0.444  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..+.+++.+.++..|++++.+++|.+|..++.++++++|++   .+|+  +++||.||.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn  290 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN  290 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence            48889999999999999999999999987521366777765   2444  589999985

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.94  E-value=1.2e-05  Score=92.11  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+..+|+|||+|.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus       536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            446689999999999999999999999999999999999998754

>PTZ00367 squalene epoxidase; Provisional

Probab=97.93  E-value=9e-06  Score=88.92  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=35.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |.....++||||||||++|+++|.+|+++|++|+|+|++.
T Consensus        27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3344457999999999999999999999999999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.93  E-value=8.6e-06  Score=88.25  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+..+..|.++++++.|++|...  ++. ..|++.+|+++.+|.||+.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~a  273 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLYA  273 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEEe
Confidence            57788888888899999999999998754  333 4577778999999999853

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.92  E-value=8.5e-06  Score=85.02  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +||+|||||++|+++|++|++.|++|+|+|+++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999999999999975

>PRK06847 hypothetical protein; Provisional

Probab=97.92  E-value=1.1e-05  Score=83.83  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .++.+.|.+.+...|.++++++.|++|..+  ++. +.|.+.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            366777777777789999999999999765  333 567778999999999984

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.92  E-value=9.2e-06  Score=89.57  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|++||+||+.++++|.+|+||||.+..||.+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            36899999999999999999999999999999999999853

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.92  E-value=1.4e-05  Score=87.65  Aligned_cols=41  Identities=20%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +.++||+|||+|++||++|+.|++.|.+|+|+|++...+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~   48 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL   48 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence            46689999999999999999999999999999999876543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.92  E-value=1e-05  Score=85.77  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            457999999999999999999999999999999999999988664

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.91  E-value=9.1e-06  Score=85.22  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             CcChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 009881          277 GQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP  334 (523)
Q Consensus       277 G~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~A~~VI-~~p  334 (523)
                      ...+|-++|.+.+...+ .+++.++.|+.+..+  ++.+. |+++ +|++++||.|| +|.
T Consensus       102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654         102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence            35677788888887777 699999999999886  44444 7777 99999999999 454

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.91  E-value=1.5e-05  Score=87.50  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC--CCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~--GG~~~s~   64 (523)
                      +.++||+|||||++||++|+.|++.|.+|+|+||++..  +++...+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l   67 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF   67 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE
Confidence            35689999999999999999999999999999999865  4444443

>PRK06753 hypothetical protein; Provisional

Probab=97.91  E-value=9.5e-06  Score=84.43  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            38999999999999999999999999999999865

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=1.1e-05  Score=81.40  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      +..+||||||+|.+||+||.+++|+|.++.+++.....||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            3579999999999999999999999999555666677887666544

>PRK06126 hypothetical protein; Provisional

Probab=97.90  E-value=1.1e-05  Score=88.39  Aligned_cols=38  Identities=8%  Similarity=0.179  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .+.++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            45578999999999999999999999999999999874

>PLN02507 glutathione reductase

Probab=97.90  E-value=1.2e-05  Score=87.18  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|+++..+  ++. +.|.+.+|+++.+|.||+.
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a  295 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA  295 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence            467777777788899999999999999754  333 4566778889999999854

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.90  E-value=1.3e-05  Score=88.57  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      |...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4456789999999999999999999999999999999887774

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=1.2e-05  Score=88.74  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ...||||||+|++||.||+.++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4569999999999999999999999999999999987764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=1.3e-05  Score=89.18  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +..++||||||+|++||.||+.++++|.+|+++||+...||.
T Consensus         5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            345689999999999999999999999999999999876653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=1.3e-05  Score=88.76  Aligned_cols=45  Identities=18%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +.+...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus         6 ~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078          6 YKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            344556799999999999999999999999999999998776664

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.88  E-value=1.7e-05  Score=84.79  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..++.+||+|||+|.+|+.+|..|++.|++|+++|+++.+||.+.
T Consensus       129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            345678999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.88  E-value=1.3e-05  Score=88.05  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ..++||||||+|.+||.||+.++++|.+|+++||....||..
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            356899999999999999999999999999999998777744

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.88  E-value=1.1e-05  Score=85.94  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~   56 (523)
                      |||+|||||++|+++|+.|++    +|.+|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            699999999999999999999    8999999999653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12839 hypothetical protein; Provisional

Probab=97.88  E-value=1.5e-05  Score=87.64  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|++||+.|+++|.+|+++||+..+||.+..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            4799999999999999999999999999999999999997653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.88  E-value=1.1e-05  Score=84.59  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999874

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.87  E-value=1.4e-05  Score=92.26  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ++..+|+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            4568999999999999999999999999999999999999865

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.87  E-value=1.4e-05  Score=83.33  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~   60 (523)
                      ||||||||++||++|.+|+++  |++|+++|+++..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999988  9999999999988774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.86  E-value=1.7e-05  Score=88.80  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+..+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            45679999999999999999999999999999999999998653

>PRK07538 hypothetical protein; Provisional

Probab=97.86  E-value=1.3e-05  Score=84.76  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.86  E-value=1.6e-05  Score=87.23  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .++||||||+|.+|++||+.++++|.+|++|||+..+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            468999999999999999999999999999999999988643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.85  E-value=1.9e-05  Score=88.06  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+.+.++..+|+|||+|.+||++|..|++.|++|+++|+++.+||.++
T Consensus       303 ~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        303 VSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            334445678999999999999999999999999999999999999875

>PRK08244 hypothetical protein; Provisional

Probab=97.85  E-value=1.4e-05  Score=86.51  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ++||+|||||++||++|+.|++.|.+|+|+||++..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            489999999999999999999999999999998753

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.85  E-value=1.5e-05  Score=87.18  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .++||||||+|++||.||+.+++.|.+|+++||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4689999999999999999999999999999999987774

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.85  E-value=1.3e-05  Score=84.15  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.+...|.+++.+++|+++..+  ++. +.|++++|+++.||.||.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence            467777878777889999999999999765  333 467778899999999984

>PRK11445 putative oxidoreductase; Provisional

Probab=97.84  E-value=1.4e-05  Score=82.56  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .|||+|||+|++||++|+.|+++ ++|+++|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.84  E-value=1.6e-05  Score=85.75  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .++.+.+.+..+..|..+++++.|++|..+  ++....|++.+|+++.+|.||+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~  282 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM  282 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence            477888888889999999999999999754  2333456677888999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.84  E-value=1.4e-05  Score=86.16  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009881          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (523)
Q Consensus       270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~~  333 (523)
                      +.+.|..|.   ..+.++|.+.++..|++++++++|++|..+. ++. +.|++   .+|+  +++|++||+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence            355677774   6899999999999999999999999998652 333 33432   2342  6899999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.83  E-value=1.7e-05  Score=82.78  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~L--a~~G~~VlvlE~n~~~   57 (523)
                      ||||||+|++||++|.+|  ++.|++|+++|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.83  E-value=1.6e-05  Score=85.75  Aligned_cols=44  Identities=16%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~   62 (523)
                      .+..+||||||||+.|+++|+.|++.  |++|+||||++.+|+..+
T Consensus         2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS   47 (494)
T PRK05257          2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS   47 (494)
T ss_pred             CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence            34568999999999999999999984  899999999988776543

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.83  E-value=1.8e-05  Score=87.83  Aligned_cols=53  Identities=17%  Similarity=0.376  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..|.++|.+.+...|.+++.++.|.+++.++ +|+++||..   .+|+  .|+|+.||+
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL  223 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVI  223 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEE
Confidence            4788999998888999999999999998742 788888864   3564  578999884

>PLN02546 glutathione reductase

Probab=97.81  E-value=1.9e-05  Score=86.29  Aligned_cols=44  Identities=27%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC---------CCCCCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n---------~~~GG~~~s~   64 (523)
                      .+|||||||+|.+|..||..|++.|++|+++|++         ..+||-|-..
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            4699999999999999999999999999999973         5688877553

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.81  E-value=2.5e-05  Score=84.14  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ....||+|||+|.+|+++|..|++.|++|+++|+++++||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3567999999999999999999999999999999999999754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.81  E-value=2.4e-05  Score=86.34  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+.++||||||+|.+|+++|..++++|++|++|||++.+||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            345799999999999999999999999999999999999997653

>PRK02106 choline dehydrogenase; Validated

Probab=97.80  E-value=2.1e-05  Score=86.63  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~   56 (523)
                      ..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            456999999999999999999999 8999999999854

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.80  E-value=2.9e-05  Score=85.62  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|++||+.++++|++|++|||++..||.+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            3689999999999999999999999999999999999997653

>PRK07588 hypothetical protein; Provisional

Probab=97.80  E-value=1.9e-05  Score=82.83  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .||+|||||++||++|+.|++.|.+|+++|+++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3899999999999999999999999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.80  E-value=2.3e-05  Score=91.36  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+..||+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus       428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            4568999999999999999999999999999999999999765

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.79  E-value=2.4e-05  Score=91.42  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||+|||||.+||+||..|++.|++|+++|+++.+||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999997754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.79  E-value=2.5e-05  Score=79.70  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +-+||||||||+||++|.+|+|.|++|+|+|++.-+=|.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            358999999999999999999999999999998866444

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.78  E-value=2.2e-05  Score=85.51  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...+||+|||||.+|++||.+|++.|++|+++|++  +||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            44699999999999999999999999999999864  999875

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.78  E-value=2.2e-05  Score=83.54  Aligned_cols=58  Identities=9%  Similarity=0.136  Sum_probs=43.3

Q ss_pred             eecCCc-ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009881          273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL  332 (523)
Q Consensus       273 ~p~gG~-~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~A~~VI~  332 (523)
                      ++.... .++.++|.+.++. .|.+++++++|..|..+  ++++++|.. .+|+  +++|+.||+
T Consensus       121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            444444 3788888877765 58999999999999876  677888653 3554  589999985

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.78  E-value=2e-05  Score=85.55  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            6999999999999999999999999999999999999974

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.78  E-value=2.3e-05  Score=87.09  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            45899999999999999999999999999999998877743

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.77  E-value=2.3e-05  Score=85.78  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=37.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -..++||||||+|++|+.||+.++ .|.+|+++||.+..||..
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS   47 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence            345789999999999999999986 599999999999888853

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.77  E-value=2.5e-05  Score=86.98  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .++||||||+|.+||.||+.++++|.+|+|+||+..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            3689999999999999999999999999999999888644

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=2.8e-05  Score=85.80  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G---~~VlvlE~n~~~GG~~   61 (523)
                      -.++||||||+|.+||.||+.++++|   .+|+++||....||.+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            34689999999999999999999998   8999999999877743

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.74  E-value=2.9e-05  Score=86.28  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG~~~s   63 (523)
                      .+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            3789999999999999999999999999999984 579997754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.74  E-value=2.7e-05  Score=86.90  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..|..+|.+.+...|..++.++.|.+|+.+  +|+++||..   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL  214 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI  214 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888888888899999999999999986  788888765   3565  368999885

>PRK05868 hypothetical protein; Validated

Probab=97.74  E-value=3e-05  Score=80.87  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .||+|||+|++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999998754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.74  E-value=4e-05  Score=75.93  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=41.3

Q ss_pred             CccCCCC--CCCCCCC----CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCC
Q 009881            7 ESELPVP--PYPPIEP----TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGS   59 (523)
Q Consensus         7 ~~~~~~~--~~~~l~~----~~~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~~GG   59 (523)
                      +.++|.|  ...+++.    .+.||+|||+|..|++.|.+|.+    .|.+|+|+|+++.|--
T Consensus        65 t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   65 TRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             cccCCCcccccccccccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            4556665  3445544    36899999999999999999854    4799999999998733

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=2.5e-05  Score=86.13  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             eecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       273 ~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ++..++ ..|.++|.+.+...|.+++.++.|.++..+  +|++.||..   .+|+  .++|+.||+
T Consensus       128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl  191 (575)
T PRK05945        128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF  191 (575)
T ss_pred             ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence            444433 478899998888899999999999999876  778887753   3565  589999985

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.73  E-value=2.8e-05  Score=85.65  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..|.++|.+.+...|.+++.++.|++|..+  +|+++||..   .+|+  .++|+.||+
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl  185 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL  185 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence            368888888888889999999999999887  788888764   3565  589999885

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02815 L-aspartate oxidase

Probab=97.73  E-value=2.9e-05  Score=85.58  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ++||||||+|++||.||+.+++.| +|++|||....||..
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            589999999999999999999999 899999999988843

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.73  E-value=3e-05  Score=80.96  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .||+|||||++|+.||+.|++.|++|+++|+++...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            5999999999999999999999999999999876543

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.72  E-value=3.3e-05  Score=83.66  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      |||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999866

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.72  E-value=4.7e-05  Score=81.67  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ....+|+|||+|.+|+.+|..|++.|++|+++|+++++||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            4457999999999999999999999999999999999999754

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.71  E-value=3.2e-05  Score=81.48  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      -+|+|||||++||++|++|++.|++|+|+|+++..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            58999999999999999999999999999998643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.71  E-value=4.2e-05  Score=87.08  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+..||+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus       428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            34568999999999999999999999999999999999999865

>PRK10262 thioredoxin reductase; Provisional

Probab=97.71  E-value=3.4e-05  Score=78.68  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||+|||+|.+|+.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887644

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.70  E-value=5.1e-05  Score=81.38  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .....+|+|||+|.+|+.||..|++  .|++|+++|+.+.+||..+.
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            3445789999999999999999987  79999999999999998875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.70  E-value=5e-05  Score=81.65  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .++..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus       138 ~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       138 VPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            34668999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06996 hypothetical protein; Provisional

Probab=97.70  E-value=3.7e-05  Score=80.94  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G----~~VlvlE~n~~   56 (523)
                      ++.+..+||+|||||++|+++|+.|++.|    ++|+++|+.+.
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            46667899999999999999999999997    47999999764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.69  E-value=5.1e-05  Score=84.49  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC--CCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~--GG~~~s   63 (523)
                      +.++||+|||||++||++|+.|++ .|.+|+|+|+++..  .|+.-.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~g   76 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADG   76 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeE
Confidence            467999999999999999999999 59999999998643  455443

>TIGR00551 nadB L-aspartate oxidase

Probab=97.68  E-value=3.9e-05  Score=82.97  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 009881          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~A~~VI~  332 (523)
                      ..|.++|.+.+.. .|.+++.++.|.+|..+  ++++++|...+ +  ..++|+.||+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl  183 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL  183 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence            4788999888877 68999999999999876  67788876543 3  3689999885

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.68  E-value=3.8e-05  Score=80.62  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ||+|||||++|+.+|.+|++.|++|+++|+++..|-..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~   39 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA   39 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence            89999999999999999999999999999988876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.67  E-value=4.1e-05  Score=90.83  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..++||||||+|.+|++||+.++++|.+|++|||.+..||...
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            3469999999999999999999999999999999999999753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.66  E-value=4.3e-05  Score=82.13  Aligned_cols=42  Identities=10%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||||||||+.|+++|+.|++.  |++|+|+||.+.+|-..+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            457999999999999999999999  999999999777776544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.66  E-value=4.7e-05  Score=82.88  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...+||+|||||.+|++||.+|++.|++|+++|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4569999999999999999999999999999985  6899775

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.66  E-value=4.7e-05  Score=80.52  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~   60 (523)
                      +|+|||||++||++|..|+++| .+|+|+||++.++..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~   39 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV   39 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC
Confidence            6999999999999999999998 599999999876543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.65  E-value=4.4e-05  Score=84.43  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....+|+|||||++||++|++|+|.|.+|+|+||+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            356899999999999999999999999999999975

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.64  E-value=4.7e-05  Score=84.43  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG   59 (523)
                      .++||||||+|.+||.||+.++++  |.+|+++||+...|+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            468999999999999999999998  999999999987544

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.64  E-value=5.2e-05  Score=84.83  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +..+|+|||+|.+||++|..|++.|++|+++|+++++||.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999874

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.63  E-value=5.1e-05  Score=82.48  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|.+||.||+.+++ |.+|+++||....||..
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            36799999999999999999976 99999999999888753

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.62  E-value=4.5e-05  Score=78.90  Aligned_cols=50  Identities=24%  Similarity=0.395  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       281 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.+.++..+..-+....|+.|..+  +++++||++.+|+.+.||.||+
T Consensus        97 y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVl  146 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVL  146 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEE
Confidence            3344445555566666678899999887  7899999999999999999885

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.61  E-value=5.8e-05  Score=81.47  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=37.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~--------~~GG~~~s   63 (523)
                      +||+||||+|.+|+.||..+++.|++|+++|+..        .+||.|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            5899999999999999999999999999999742        58887644

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.59  E-value=5.6e-05  Score=74.75  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFT  337 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~--i~A~~VI-~~p~~~  337 (523)
                      .+-+.+-|..+..||.++-+-+|......  +|++..|-+.++..  ++|+.+| ...++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence            67888999999999999999999999887  78888888877765  5788877 445544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.58  E-value=6.2e-05  Score=82.53  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      .++.+.|.+.+...|.++++++.|+++..++ +++++||..   .+|+  .|+|+.||+
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl  191 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL  191 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence            4788888888888899999999999998872 344888753   4564  589999985

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.58  E-value=6.4e-05  Score=82.95  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|++||.||+.++++|  .+|+++||....||.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            4589999999999999999999874  7999999998887744

>PRK08275 putative oxidoreductase; Provisional

Probab=97.58  E-value=6.5e-05  Score=82.53  Aligned_cols=54  Identities=22%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..++.+.|.+.+...|.+++.++.|.+|..++ +|+++||..   .+|+  .++|+.||+
T Consensus       136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            34788899888888999999999999998752 577888763   3565  478999885

>TIGR00275 flavoprotein, HI0933 family

Probab=97.57  E-value=4.2e-05  Score=80.59  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=48.6

Q ss_pred             EeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 009881          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (523)
Q Consensus       272 ~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~~~~  340 (523)
                      .||... ..++.+++.+.++..|.++++++.|++|..+  ++ .+.|++ +++++.||.||+ .....+|.
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~  163 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ  163 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence            466554 4689999999999999999999999999654  33 356776 677899999985 34333343

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.56  E-value=7.4e-05  Score=78.83  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~A~~VI~  332 (523)
                      ++.++|.+.++..|+++++++.|.++..+  ++++..|...+|+  .++||.||+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence            89999999999999999999999999876  5666666555554  489999885

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.55  E-value=0.00011  Score=79.36  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            446999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.55  E-value=8.5e-05  Score=80.99  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +...++||||||+|.+||.||..++.+|.+|+++||....||+...
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            4556799999999999999999999999999999999999876544

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.53  E-value=7.7e-05  Score=82.20  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      ++||||||+|++||.||+.++++  |.+|+++||....||..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            58999999999999999999987  57999999999888854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.53  E-value=8.8e-05  Score=79.73  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.+...|.+++.+ .|..+..+  ++++++|.. +|+.++|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            478899999998899998865 78888765  678888875 677899999985

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.52  E-value=9.2e-05  Score=81.79  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~---g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..|.++|.+.+...|.+++.++.|.+++.++ +   |+++||..   .+|+  .++|+.||+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  200 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF  200 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence            4788999888888999999999999998762 2   78888864   3565  478999985

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.52  E-value=8.9e-05  Score=81.10  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +.++||||||+|++||.||+.+++. .+|+++||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            3468999999999999999999986 899999999988874

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.49  E-value=0.00019  Score=74.81  Aligned_cols=60  Identities=13%  Similarity=0.185  Sum_probs=45.7

Q ss_pred             EeecCCc----ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 009881          272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD  333 (523)
Q Consensus       272 ~~p~gG~----~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-----~G~~i~A~~VI~~  333 (523)
                      .+...|+    |+|.+.|.+.+... |..+++++.|+.|.... +|. +.|.+.     +.++++|+.|+++
T Consensus       170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG  239 (488)
T PF06039_consen  170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG  239 (488)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence            4556775    79999999988887 99999999999998863 443 455432     2356999999875

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=0.00011  Score=78.72  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n   40 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN   40 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence            79999999999999999999999999999975 7776654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.47  E-value=0.00013  Score=68.73  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ||||||+|.+|+.||..|++.|++|+++|+++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.46  E-value=9.5e-05  Score=80.78  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..++|+||||+|.+|+++|.+|++.|++|++||+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            45799999999999999999999999999999985

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.42  E-value=0.00018  Score=74.34  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            36899999999999999999999999999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.38  E-value=0.00028  Score=56.31  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      |+|||+|..|+-+|..|++.|++|+++|+++++.
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            7999999999999999999999999999999987

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.38  E-value=0.00025  Score=78.13  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            456899999999999999999999999999999999999764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00019  Score=80.50  Aligned_cols=53  Identities=19%  Similarity=0.252  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        10 ~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |-+| -||...+-+.|.|||+|.+||.||..|-|+|+.|+|+||.|++||....
T Consensus      1774 wm~p-~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1774 WMKP-CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             CCcc-CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            4444 3455567789999999999999999999999999999999999998764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.37  E-value=0.00022  Score=75.82  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++-..+...|.|||+|.+||++|..|+++|++|+++|+.+..||+...
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            333455589999999999999999999999999999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.36  E-value=0.00026  Score=80.52  Aligned_cols=42  Identities=26%  Similarity=0.291  Sum_probs=38.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .++...|+|||+|.+|++||..|++.|++|+++|+.+..|+.
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            346789999999999999999999999999999998877665

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.36  E-value=0.00016  Score=73.44  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----C--CCeEEEeccCCCCCCCccccc------ccch-hhhhccC
Q 009881           21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IADL-THFLNSH   76 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~----~--G~~VlvlE~n~~~GG~~~s~~------~~~~-~~~~~~~   76 (523)
                      .++||+|||+|.+||+||++|.+    +  -.+|.|+||...+||+.-+-.      ++++ ++|-++.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~  143 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDG  143 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcC
Confidence            46999999999999999999854    2  458999999999999987643      2332 4676654

>PRK07846 mycothione reductase; Reviewed

Probab=97.35  E-value=0.00019  Score=76.82  Aligned_cols=40  Identities=25%  Similarity=0.487  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +||+||||+|.+|..||.+  ..|++|+++|+ +.+||-|-.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence            4899999999999988866  46999999998 5688877554

>TIGR01810 betA choline dehydrogenase

Probab=97.35  E-value=0.00016  Score=79.04  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999999 69999999754

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.33  E-value=0.00022  Score=78.90  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La----~~G~~VlvlE~n~~~   57 (523)
                      ||||||+|.+||.||+.++    ++|.+|+++||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.33  E-value=0.0002  Score=76.68  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=34.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      +|||||||+|.+|..||++  ..|++|+++|+ +.+||.|-.+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence            5999999999999888654  46999999998 5789988654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.32  E-value=0.00018  Score=78.25  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A~~VI~  332 (523)
                      ..+.++|.+.+... |.+++.++.|.++..+  +|+++||...+ ++  .++|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            47889998888765 8899999999999776  67888887543 33  589999985

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.28  E-value=0.00026  Score=77.11  Aligned_cols=38  Identities=34%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      |||||||+|++|+.||.++++.|++|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            69999999999999999999999999999998544433

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.26  E-value=0.00026  Score=71.39  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||+|||+|.+|-.||...++.|.+...+|+|..+||-|-.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN   80 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence            5799999999999999999999999999999999999998754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.26  E-value=0.00022  Score=78.93  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      |||||+|.+||.||+.++++|.+|+|+||+..+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            799999999999999999999999999999976543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.24  E-value=0.0003  Score=81.59  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .++||||||+|.+||.||+.+++.|.+|+++||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999885

>PRK13984 putative oxidoreductase; Provisional

Probab=97.24  E-value=0.00037  Score=77.50  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+..+|+|||+|.+|+++|..|++.|++|+++|++++.||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3567999999999999999999999999999999999999764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.23  E-value=0.00033  Score=75.39  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|..+++++.|++|..+  ++. +.|.+.+|+++.+|.||+.
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a  269 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA  269 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence            367777778888899999999999999754  333 3566778999999998854

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.22  E-value=0.0003  Score=80.23  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~   57 (523)
                      .+|+|||||++||++|+.|++.  |++|+|+|+++..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            3799999999999999999998  8999999999863

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.21  E-value=0.00034  Score=68.83  Aligned_cols=61  Identities=20%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             CCCCCccCCCCCC-CCCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009881            3 GNESESELPVPPY-PPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus         3 ~~~~~~~~~~~~~-~~l~~~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~s   63 (523)
                      .|.++-.+|...- -+.+...||.||||+|+.|++.|..|.-.  +.+|.|||+...++=+.+.
T Consensus        28 ~~~~t~~R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg   91 (453)
T KOG2665|consen   28 WNLITIKRGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG   91 (453)
T ss_pred             ccccceeccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence            4445555555532 35677889999999999999999998877  9999999998777655444

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.19  E-value=0.00048  Score=73.26  Aligned_cols=43  Identities=14%  Similarity=0.061  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHH-hhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~L-a~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ....|+|||+|.+|+.||..| ++.|++|.++|+.+.+||..+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            346799999999999999975 5679999999999999999875

>PLN02785 Protein HOTHEAD

Probab=97.17  E-value=0.00037  Score=76.82  Aligned_cols=35  Identities=34%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46999999999999999999999 699999999753

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.13  E-value=0.00043  Score=72.49  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=46.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF  336 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~A~~VI~-~p~~  336 (523)
                      ..|.++|.+.++..||+++.+..|.++..+  ++++++|.+.++  .+++||+||+ ...+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence            488899999999999999999999999876  677778876666  4799999885 4445

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.94  E-value=0.00067  Score=71.69  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +..|||||||||++|+-||++.||.|.+++++=-|
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            35699999999999999999999999999988654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.80  E-value=0.0013  Score=64.99  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      -|||||+|++||+|+..+-..|-.|++||++...||+..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999999999999999999754

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.68  E-value=0.0017  Score=68.06  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ||+|||+|++||++|+.|++. ++|+|+=|+..-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999999 999999998764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.66  E-value=0.021  Score=57.76  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+..+-|||+|++||++|..|-|.    |+++.++|--+..||..-.
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            346789999999999999999765    7899999999999997644

>PRK09897 hypothetical protein; Provisional

Probab=96.58  E-value=0.0023  Score=69.54  Aligned_cols=38  Identities=11%  Similarity=0.078  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCC-CC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG-SH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~G-G~   60 (523)
                      ++|+|||+|.+|+.+|..|.+.+.  +|+|+|++..+| |.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            589999999999999999988754  899999999999 54

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.56  E-value=0.0027  Score=66.83  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      ++.+.+.+.++..|.++++++.|++|..   ++. +.|.+.+|+++.||.||+..
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~  237 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI  237 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence            5556677777889999999999999853   222 45778899999999999754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.47  E-value=0.0026  Score=67.84  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.++++++.|++|..   +++...|.+ +++++.||.||+..
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a~  242 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVAT  242 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEECc
Confidence            46778888888899999999999999943   344455654 55679999998643

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.42  E-value=0.0042  Score=67.28  Aligned_cols=39  Identities=31%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~   57 (523)
                      ....||.||||||-+|+++|++|++. -.+||+||+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            34579999999999999999999998 6899999996544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.39  E-value=0.0034  Score=65.17  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..+.|||||||||++|.-||++.||-|-+.++|-.|
T Consensus        25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            356799999999999999999999999988887664

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0034  Score=62.53  Aligned_cols=36  Identities=33%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      ...-+||.||||+|-+||++|-..++-|++|.+||-
T Consensus        15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            344579999999999999999999999999999995

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.37  E-value=0.0042  Score=66.01  Aligned_cols=48  Identities=23%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      ++.+.+.+..+..|.++++++.|++|.    .+   .|.+++|+++.||.+|..+
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~  276 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWST  276 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEcc
Confidence            577777788899999999999999984    22   3567899999999998653

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.29  E-value=0.004  Score=65.13  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+|+|||+|..|+.+|..|++.|++|+++|+++++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            6999999999999999999999999999999999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.11  E-value=0.006  Score=65.10  Aligned_cols=49  Identities=12%  Similarity=0.117  Sum_probs=39.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+..+..|.++++++.|++|.    ..   .|++++|+++.+|.||+..
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a~  237 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEGV  237 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEECc
Confidence            3677778888888999999999999983    22   3566788899999998643

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.95  E-value=0.0026  Score=59.33  Aligned_cols=40  Identities=13%  Similarity=0.178  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      +-||||||+|-+||+||+..+++  ..+|.++|+.--+||-.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            36999999999999999999855  68999999999998754

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.90  E-value=0.0098  Score=60.98  Aligned_cols=41  Identities=24%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCC
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPF   56 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~   56 (523)
                      -+.+...|||||+|||+.|++.|+.|..+    -+||+++|..+.
T Consensus        30 ~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   30 KSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            34455589999999999999999999865    589999999843

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.87  E-value=0.0094  Score=59.77  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+||..|||+|-+|+.+|.+.+.-|.+|.++|..-.+||-|-.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            4799999999999999999999999999999999999997754

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.85  E-value=0.0099  Score=59.19  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .--|.|||+|++|+-||+.++++|.+|.+.|-++.=+--+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            3468999999999999999999999999999997766443

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.74  E-value=0.032  Score=56.74  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +++|..|.   ..+.+++.+.+...|++++.+++|+.|..+  ++++++|.+.+| +++||+||+.
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  188 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA  188 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence            55677774   689999999999999999999999999876  666778886555 8999999853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.55  E-value=0.0067  Score=64.04  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      +|||+|||||-.|.-+|+-.+-.|.+|.++|++|+--|
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG  104 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG  104 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence            59999999999999999999999999999999997544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.53  E-value=0.014  Score=54.58  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||.|..||.+|+.||++|++|+-+|.|..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.33  E-value=0.018  Score=59.65  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      ++.+.+.+.++..|.++++++.|++|.    ++   .|.+.+|+++.+|.||+.+.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG  240 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence            566777788889999999999999883    22   46678899999999997544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.16  E-value=0.023  Score=51.51  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009881           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF   56 (523)
Q Consensus        26 IIIGaGl~GL~aA~~La~~-----G~~VlvlE~n~~   56 (523)
                      +|||+|++|++++..|.+.     ..+|+|+|+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999888     568999999766

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.03  E-value=0.028  Score=58.68  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=37.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~A~~VI  331 (523)
                      .++.+...+..+..|.+++++++|++|..   +    +|.+.+|+ +|.|+.+|
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence            36777777888999999999999999843   2    46677887 49999999

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.93  E-value=0.031  Score=51.98  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|..|...|..++++|++|.++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            37899999999999999999999999999975

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=94.81  E-value=0.018  Score=56.37  Aligned_cols=40  Identities=8%  Similarity=0.172  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G------~~VlvlE~n~~~GG~~~   62 (523)
                      ..++|||+|+.|..+|++|++.+      ..|+++|+....||...
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            68999999999999999999999      89999999999888643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.73  E-value=0.034  Score=58.44  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            469999999999999999999999999999999887653

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=94.69  E-value=0.089  Score=54.90  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             ecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009881          274 PIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (523)
Q Consensus       274 p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~  336 (523)
                      |.-|+   -++.+.+.+.+..+|++|+.++.|..|.+.  ++.+.+|++++|++|.||+||+.|-.
T Consensus       165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence            44565   467788888889999999999999999987  66678899999999999999987654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.55  E-value=0.042  Score=49.88  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            47899999999999999999999999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.06  Score=58.16  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ....|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            345799999999999999999999999999998764

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=94.20  E-value=0.24  Score=51.40  Aligned_cols=113  Identities=19%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             cCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHH
Q 009881          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (523)
Q Consensus       206 ~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal  285 (523)
                      ...|..|||++.++++...+-+..+....+|.++.   .+      ..+...+...|.   ..| .+-++||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a---~~g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGA---TGG-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeec---cCC-ceEecCCHHHHHHHH
Confidence            45788999999999988876666666667777642   12      222222222221   122 467899999999977


Q ss_pred             HHHHHHcCcEEEcCCceeEEEEecCCCc-EEEEEeCC--CcE-EEcCEEEECCC
Q 009881          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDPS  335 (523)
Q Consensus       286 ~r~~a~~Gg~~~L~~~V~~I~~~~~~g~-~~gV~l~~--G~~-i~A~~VI~~p~  335 (523)
                      .+   .-|+.+ +++.|++|.....++. ...|...+  +.. -..|.||+..+
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtP  184 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATP  184 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCC
Confidence            64   678899 9999999933222332 23444332  222 23599986533

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.17  E-value=0.059  Score=56.76  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~----G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++|+|||+|.+|+..|..|.+.    ++ |.++|+++..|+-...
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~GiaY   45 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAY   45 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCccC
Confidence            37999999999999999999776    34 9999999999876553

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.14  E-value=0.067  Score=54.38  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++....|.|||+|.-|...|.+|+++|++|+++.++.
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3455689999999999999999999999999999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.05  E-value=0.064  Score=55.96  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            47999999999999999999999999999999887543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.05  E-value=0.033  Score=55.90  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ..|||+|||+|.+|-+||.+.+|+|.+.=++-  ++.||..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv  248 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV  248 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence            45999999999999999999999999876653  5688864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.99  E-value=0.054  Score=54.91  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999863

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.94  E-value=0.068  Score=55.76  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      ++.+.+.+.++..|.+++++++|++|..+  ++ .+.|.+.+|+++.||.||+..-
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~-~~~v~~~~g~~i~~D~vI~a~G  236 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DS-GIRATLDSGRSIEVDAVIAAAG  236 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CC-EEEEEEcCCcEEECCEEEECcC
Confidence            56667777788899999999999999754  33 3467788999999999996543

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=93.87  E-value=0.12  Score=53.84  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      +++|..|.   ..+.++|.+.+.. |++++.+++|.+|..+  +++ ++|++.+|+.++||+||+
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~  184 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL  184 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence            56777775   5888999988888 9999999999999865  444 678888888899999885

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.82  E-value=0.083  Score=47.26  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |.|+|+|-.|+..|++|+++|++|.++.++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.81  E-value=0.044  Score=56.40  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      .+|+|+||.|..+|++|++|...+ .+++.+|+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            489999999999999999999987 99999999764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=93.79  E-value=0.082  Score=53.86  Aligned_cols=43  Identities=9%  Similarity=-0.019  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCcccc
Q 009881           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      ...|.|||+|.+|..+|..|-+  .+..|.++|+.+.++|..+.-
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            4589999999999999998887  479999999999999998763

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.70  E-value=0.087  Score=56.16  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999999987554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.60  E-value=0.078  Score=57.12  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            5799999999999999999999999999999987643

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.52  E-value=0.081  Score=56.76  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .|.|||.|.+|+++|..|.+.|++|++.|+++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            3899999999999999999999999999998765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.46  E-value=0.088  Score=56.46  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            5899999999999999999999999999999988754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=93.06  E-value=0.12  Score=55.52  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            57999999999999999999999999999999887543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=93.01  E-value=0.12  Score=55.43  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            57999999999999999999999999999999987654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.95  E-value=0.1  Score=52.42  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999999854

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.90  E-value=0.13  Score=51.68  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.88  E-value=0.11  Score=54.89  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||.|..|+..|..|+++|++|..+|++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5699999999999999999999999999998764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.86  E-value=0.14  Score=54.72  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .....|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345679999999999999999999999999999975

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.82  E-value=0.13  Score=59.29  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      +..+.+.+..+..|.++++++.|++|..+. ++....|.+++|+++.+|.||+.+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence            455667788889999999999999996532 234567888899999999999643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.78  E-value=0.12  Score=55.07  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            4799999999999999999999999999999988754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.78  E-value=0.13  Score=55.17  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999988753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.75  E-value=0.14  Score=54.90  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            47999999999999999999999999999999887543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.66  E-value=0.14  Score=54.99  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.66  E-value=0.15  Score=54.93  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.57  E-value=0.13  Score=49.59  Aligned_cols=32  Identities=25%  Similarity=0.487  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +++|||+|--|...|..|++.|+.|+++|+++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            68999999999999999999999999999975

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=92.57  E-value=0.33  Score=52.92  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~  332 (523)
                      +.+| .|.   ..+..++.+.+..+|++++.+++|++|..+  ++++++|++.   +|+  +|+|++||.
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            6677 453   488899999999999999999999999876  6777777753   353  689999884

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=92.54  E-value=0.15  Score=54.63  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            5799999999999999999999999999999998765

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.54  E-value=0.15  Score=54.92  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            5799999999999999999999999999999988754

>PRK07846 mycothione reductase; Reviewed

Probab=92.54  E-value=0.15  Score=54.71  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            579999999999999999999999999999998775

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.54  E-value=0.15  Score=51.11  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|.-.|..|+++|++|+++|.++.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            689999999999999999999999999998864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.54  E-value=0.14  Score=55.00  Aligned_cols=37  Identities=11%  Similarity=0.011  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            4799999999999999999999999999999887644

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.48  E-value=0.12  Score=59.19  Aligned_cols=53  Identities=13%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      ++.+.+.+..+..|..+++++.|++|..   +++..+|++++|+++.+|.||+.+.
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G  235 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG  235 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence            4455666777889999999999999853   3455678889999999999996543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=92.40  E-value=0.47  Score=50.00  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +||+|||+|++|+++|+.|++.|++|+++|++.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK04148 hypothetical protein; Provisional

Probab=92.39  E-value=0.12  Score=45.44  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999876

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.34  E-value=0.16  Score=53.99  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998773

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.30  E-value=0.19  Score=50.49  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.25  E-value=0.18  Score=54.01  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            57999999999999999999999999999999987553

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.24  E-value=0.15  Score=51.83  Aligned_cols=33  Identities=36%  Similarity=0.444  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..++++|++|.++|.++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            358999999999999999999999999999875

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=91.87  E-value=0.97  Score=47.09  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=46.5

Q ss_pred             EEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 009881          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~A~~VI~  332 (523)
                      .+||.-. ..++.++|.+.+...|.+++++++|++|  +  +++ ..|++.++ +.++||+||+
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl  135 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL  135 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence            5799766 5799999999999999999999999999  3  333 56776443 5699999985

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=91.84  E-value=0.22  Score=53.79  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            48999999999999999999999999999999987543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.79  E-value=0.18  Score=51.97  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68899999999999999999999999999875

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.72  E-value=0.2  Score=50.12  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999997754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.70  E-value=0.14  Score=50.95  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC--------CCCCCCccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n--------~~~GG~~~s~~   65 (523)
                      -+|+|||+|..|.-||....--|-+|+++|.|        +.+||+..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            58999999999999999999999999999999        66888877654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=91.70  E-value=9.6  Score=39.65  Aligned_cols=50  Identities=26%  Similarity=0.219  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+-+.+.+.++ .++++++++.|++|..+  ++ .+.|++++|++++|+.||-
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~VvD  136 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVVD  136 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEEE
Confidence            466676777777 78889999999999765  33 3567789999999999883

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.68  E-value=0.19  Score=57.70  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            3699999999999999999999999999999887643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.67  E-value=0.2  Score=50.33  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|-.|...|..|+++|++|.+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.66  E-value=0.52  Score=44.08  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+-+.+.++.+|..+++++.|++|..+  +++ +.|++.+|++++|++||+.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA  133 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA  133 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence            466777778888889889999999999887  444 7899989989999999953

...

>TIGR03452 mycothione_red mycothione reductase

Probab=91.65  E-value=0.22  Score=53.40  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.62  E-value=0.19  Score=50.50  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3589999999999999999999999999998763

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.39  E-value=0.21  Score=54.41  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            489999999999999999999999999999988764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.36  E-value=0.24  Score=50.21  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~   55 (523)
                      .|.|||+|..|+++|+.|++.|  ..|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5899999999999999999999  5899999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.16  E-value=0.26  Score=52.52  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|++|+++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4799999999999999999999999999999887644

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.07  E-value=0.3  Score=52.58  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            479999999999999999999999999999998876653

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.96  E-value=0.27  Score=49.80  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+|.|||+|--|...|++|+++|.+|.++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999963

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.85  E-value=0.27  Score=52.69  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|||||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=90.84  E-value=0.24  Score=52.42  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999999764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=90.81  E-value=0.29  Score=52.39  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  202 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL  202 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence            469999999999999999999999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=90.74  E-value=0.3  Score=49.60  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      -.|+|||+|..|+-+|..|++.|++|+++++++..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998865

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.73  E-value=0.3  Score=54.72  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            4799999999999999999999999999999998765

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=90.70  E-value=0.63  Score=50.44  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             ccEEeecCCc---ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009881          269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (523)
Q Consensus       269 ~~~~~p~gG~---~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~~  333 (523)
                      ++.+.|.+|.   +.+.++|.+.++..| ++++++++|++|..+. +++ +.|.+   .+|+  +++|++||+.
T Consensus       170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva  241 (494)
T PRK05257        170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG  241 (494)
T ss_pred             eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence            3455677773   589999999998887 5999999999998752 443 33443   3464  6999998853

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.69  E-value=0.41  Score=44.00  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccC
Q 009881           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGaGl-~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            457899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.68  E-value=0.28  Score=49.75  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            368999999999999999999999999999865

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=90.67  E-value=0.28  Score=49.38  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      .|.|||+|..|...|..|+++|++|.++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PTZ00058 glutathione reductase; Provisional

Probab=90.57  E-value=0.28  Score=53.94  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4799999999999999999999999999999988653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.55  E-value=0.28  Score=56.62  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .++|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            689999999999999999999999999999987543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.54  E-value=0.26  Score=50.54  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            69999999999999999999999999999853

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.42  E-value=0.36  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      ..|.|||+|..|+..|+.|+..|+ +|.++|.++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            368999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=90.33  E-value=0.57  Score=49.39  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ||||||+|++||+||+.++++|.+|+++||.+.+||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.33  E-value=0.31  Score=53.22  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      -+|+|||||..|+-+|..|++.|++|+++++.+.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            48999999999999999999999999999998876

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=90.32  E-value=0.8  Score=49.52  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~s   63 (523)
                      +||||||||+.|+++|+.|++.  |++|+||||.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            5999999999999999999997  9999999998877754443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.27  E-value=0.36  Score=48.57  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999999999999999999999999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=90.22  E-value=0.4  Score=43.99  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|..|..||..|.+-|.+|.++|.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            579999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.19  E-value=0.32  Score=53.62  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      -.|+|||+|..|+-.|..|++.|++|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=90.12  E-value=0.37  Score=51.48  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|..|+=.|-.+++-|-+|+++|+++++--.
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~  211 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG  211 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence            35999999999999999999999999999999987653

>PLN02507 glutathione reductase

Probab=90.08  E-value=0.35  Score=52.52  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -+|+|||+|..|+-.|..|++.|.+|+++++.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999988753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=90.06  E-value=0.43  Score=50.90  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            47999999999999999999999999999998877543

>PRK06116 glutathione reductase; Validated

Probab=89.92  E-value=0.39  Score=51.40  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            579999999999999999999999999999988764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.81  E-value=0.39  Score=47.82  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..|+|||+|.+|+-+|..|++.|++|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            48999999999999999999999999999998755

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=89.76  E-value=0.36  Score=49.87  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~   56 (523)
                      -.|+|||+|..|+-+|..|++.|.+ |+++++++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999997 999998765

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.76  E-value=0.36  Score=48.13  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||.|+-|...|..|+++|++|.++|++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899999999999999999999999999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.57  E-value=0.43  Score=48.50  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=89.57  E-value=0.39  Score=51.65  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999998764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.51  E-value=0.39  Score=51.65  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~   56 (523)
                      +.|.|||+|..|+.+|+.||++  |++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            4699999999999999999998  588999997653

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.50  E-value=0.47  Score=48.09  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999875

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=89.42  E-value=0.5  Score=49.33  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        15 ~~~l~~~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +-++++....|.||| .|+-|...|..|+++|+.|.++++++
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            344555667899999 89999999999999999999999865

>PRK13748 putative mercuric reductase; Provisional

Probab=89.39  E-value=0.45  Score=52.46  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|+|||+|..|+-.|..|++.|++|++++++..
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            4799999999999999999999999999998643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.15  E-value=0.58  Score=39.61  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=28.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |||+|.|--|..+|..|.+.|.+|+++|++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999888999999985

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=89.14  E-value=0.37  Score=48.15  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~-G~-~VlvlE~n~~   56 (523)
                      ...++.|+|||||-+|+..|+.+.|. |. +|-++|..++
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            45789999999999999999999887 54 7999998753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.12  E-value=0.54  Score=42.68  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      ++.....|+|||||-.|..-|..|.+.|.+|+|+.+
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            455667899999999999999999999999999954

>PLN02546 glutathione reductase

Probab=89.08  E-value=0.49  Score=52.08  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999887654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=88.99  E-value=0.54  Score=42.79  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|-|||.|..|...|..|.++|++|.++|++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            368899999999999999999999999999874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=88.97  E-value=0.42  Score=45.42  Aligned_cols=42  Identities=17%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEecc---CCC-CCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~---n~~-~GG~~~s   63 (523)
                      .-.|+|||+|.++-+||++++|+-.|-+++|-   |+. +||...|
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT   53 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT   53 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence            34899999999999999999999999999994   343 3665544

>PRK14694 putative mercuric reductase; Provisional

Probab=88.96  E-value=0.53  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            479999999999999999999999999999753

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.90  E-value=0.55  Score=50.63  Aligned_cols=45  Identities=27%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus         9 ~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+|+.-.|.++...  |.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus         4 ~~~~~~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141          4 LVPLSALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             cChhhhcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            45666667777664  8999999999999999999999999999754

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.79  E-value=0.51  Score=49.19  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            569999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=88.76  E-value=0.57  Score=44.43  Aligned_cols=37  Identities=14%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ++.....|+|||||=.|...|..|.++|.+|+|+++.
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3455678999999999999999999999999999863

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=88.62  E-value=0.37  Score=40.31  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4456789999999999999999999999999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.59  E-value=0.58  Score=44.47  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.....|+|||+|-.|...|..|.+.|.+|+|++.+.
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3445689999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=88.55  E-value=0.55  Score=48.83  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n   54 (523)
                      .+|+|||+|-.|+.+|..|++.| .+|++.+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 999999997

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.52  E-value=0.64  Score=47.49  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|--|...|..|+++|++|.+++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.36  E-value=0.57  Score=47.82  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++.|||+|--|.+.|..|+++|++|.+++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999999864

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=88.25  E-value=0.44  Score=45.29  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|.|||+|+-|+-.|--.+.+|+.|.++|+|..
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            35799999999999999999999999999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=88.24  E-value=0.64  Score=50.22  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|..|+-.|..|++.|++|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            479999999999999999999999999999753

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.05  E-value=0.56  Score=49.18  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|..|+..|..|+. |++|+.+|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            48899999999999988885 999999998764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=88.03  E-value=0.64  Score=44.57  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.||| +|.-|.+.|..|+++|++|.++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 89999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.95  E-value=0.98  Score=42.73  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.....++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3444679999999999999999999999999999873

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.92  E-value=0.59  Score=41.35  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ++|+|+|..+..+|..++.-|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999853

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=87.86  E-value=0.88  Score=47.33  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.+......|+|.|+ |.-|..++.+|.+.|++|+.++++.
T Consensus        13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34556667778999998 9999999999999999999999753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=87.82  E-value=1.5  Score=48.53  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-~~VI~  332 (523)
                      ..|.++|.+.+...|++++++++|++|..+  ++++++|+.. +++  +++| +.||+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl  272 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL  272 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence            468899999999999999999999999876  6788888653 233  4788 88885

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=87.73  E-value=2.5  Score=44.47  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             cEEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEC
Q 009881          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVLD  333 (523)
Q Consensus       270 ~~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~A~~VI~~  333 (523)
                      ++++|..|.   ..+.++|.+.+...|++++.+++|++|..+  ++.+ .|.+.++     .+++||+||+.
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~a  253 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVVC  253 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEEC
Confidence            355676654   356788899999999999999999999765  4443 3433332     37999998853

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.68  E-value=0.8  Score=43.36  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ...|.|||+|--|+.+|..|+++|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999998 69999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=87.50  E-value=0.57  Score=50.84  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            589999999999999999999999999998753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=87.46  E-value=0.59  Score=50.70  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999999999999864

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=87.44  E-value=1.7  Score=45.36  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=25.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEe
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHL   51 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~Vlvl   51 (523)
                      ||||||||++|+.||+++||.|.+|+++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            8999999999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07121 hypothetical protein; Validated

Probab=87.43  E-value=1.5  Score=47.41  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-~~VI~  332 (523)
                      ...+.+.|.+.++..|++|+++++|++|..++ +|++++|+.. +|+  .++| +.||+
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            45789999999999999999999999998763 5788888763 333  4789 88885

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=87.37  E-value=0.7  Score=47.81  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~   57 (523)
                      ++..+|+|.||-|..-|..|++|...+ .+++.|||...+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            456799999999999999999999986 889999998764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.32  E-value=0.83  Score=45.23  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ...|+|||.|-.|+.+|..|+++| .+++++|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            357999999999999999999999 7899999653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=87.29  E-value=0.75  Score=46.58  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~   56 (523)
                      .|+|||+|..|.++|..|+..|  .+|.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999999  58999999753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00052 thioredoxin reductase; Provisional

Probab=87.27  E-value=0.74  Score=50.00  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            7999999999999999999999999999974

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=87.14  E-value=0.6  Score=40.77  Aligned_cols=38  Identities=16%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .......|.|||+|=.|-.+|.+|.++|+.|.-+..++
T Consensus         6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs   43 (127)
T PF10727_consen    6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS   43 (127)
T ss_dssp             ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred             cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34567899999999999999999999999998877654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=87.10  E-value=0.71  Score=49.51  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      -.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            589999999999999999999998 8999998764

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=86.98  E-value=2.5  Score=46.70  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             eecCCcC-hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       273 ~p~gG~~-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ++..++| .|.++|.+.+...|.+++.++.|.+++++  +|+++||..   .+|+  .|+|+.||+
T Consensus       112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            4444444 79999999888899999999999999886  789999864   3565  478999995

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.96  E-value=0.74  Score=49.45  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|+|.|.+|..+|..|.+.|++|.+.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=86.77  E-value=0.7  Score=50.01  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      -.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            36999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=86.71  E-value=1.1  Score=39.54  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n   54 (523)
                      ...|+|||+|=+|-.++.+|++.|.+ |.++-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46799999999999999999999977 9999876

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.67  E-value=1  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..++|+|.|-+|+.+|..|++.|++|.+.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999987653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.59  E-value=1.4  Score=46.23  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=36.1

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++.+.+.....|+|+|+ |..|..++..|.++|++|..+.++.
T Consensus        52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            45666677778999996 9999999999999999999998864

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=86.39  E-value=0.78  Score=45.98  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |-|||.|.-|...|..|++.|++|.+++++.
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            7899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=86.36  E-value=2.1  Score=46.36  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             ccEEeecCCc---ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 009881          269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD  333 (523)
Q Consensus       269 ~~~~~p~gG~---~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~A~~VI~~  333 (523)
                      ++.+.|.+|.   +.|.++|++.+.. .|++++++++|..|..++ ++. +.|+   +.+|+  +++||+||+.
T Consensus       171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A  242 (497)
T PRK13339        171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG  242 (497)
T ss_pred             eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence            3455677763   5899999998864 589999999999997642 333 3444   33453  6899999853

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=86.36  E-value=0.78  Score=46.30  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        25 VIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      |.|||+|..|..+|..|+..|. +|.++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999987 999999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.36  E-value=0.67  Score=52.63  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4589999999999999999999999999998853

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=86.33  E-value=0.83  Score=49.70  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|.|||+|.-|.-.|..|+++|+.|.++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999998864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=86.18  E-value=0.87  Score=49.28  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La---~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-.|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999996554   45999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.17  E-value=0.98  Score=48.19  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|-.|.++|..|++.|.+|.+.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            458999999999999999999999999999765

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=86.09  E-value=2.2  Score=47.26  Aligned_cols=52  Identities=25%  Similarity=0.267  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-~~VI~  332 (523)
                      ..|.++|.+.++..|++++++++|.++..+  ++++++|...+ |+  +|+| +.||+
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl  276 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL  276 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence            378899999999999999999999999876  78888987643 33  4776 56774

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=86.04  E-value=0.95  Score=48.05  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCeEEEeccCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGS   59 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~--------------~G~~VlvlE~n~~~GG   59 (523)
                      .|+|||+|..|+-.|..|+.              .|.+|+++|+.+++.+
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence            79999999999999999875              5899999999987754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.95  E-value=1  Score=48.16  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +|+.++--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus         1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            355566679999999999999999999999999999876

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.86  E-value=1  Score=45.53  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      ..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999654

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.56  E-value=0.92  Score=48.88  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=85.56  E-value=0.88  Score=51.64  Aligned_cols=33  Identities=21%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|.-.|..++++|++|.++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=85.53  E-value=0.92  Score=45.69  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999874

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=85.42  E-value=0.49  Score=46.88  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=22.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK   46 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~   46 (523)
                      ...+++|||+|..||++|..+.+.+.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~   27 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYH   27 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhh
Confidence            34689999999999999999988663

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=85.38  E-value=3  Score=44.20  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++||||||+|++|+++|+.|+++|++|+++|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.06  E-value=1  Score=48.75  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            59999999999999999999999999999763

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=84.97  E-value=3.1  Score=44.17  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .++-+.|.+.++..|++++.+++|+++..+  ++++++|+ ++|++++|+.||.
T Consensus       108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~  158 (428)
T PRK10157        108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL  158 (428)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence            356667778888899999999999999876  56666665 5788899999984

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=84.96  E-value=2.9  Score=45.54  Aligned_cols=51  Identities=16%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~A~~VI~  332 (523)
                      .+.++|.+.++..|.+++++++|++|..+  +|++++|+.  .+|+  +++|+.||+
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVl  245 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVV  245 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEE
Confidence            68899999999999999999999999765  678878765  3333  589999985

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=84.93  E-value=1.6  Score=38.99  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ...++|||+|..|...|..|++.| ++|.+++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            457999999999999999999996 8999999874

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=84.83  E-value=2  Score=34.50  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEecc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~   53 (523)
                      ...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 789999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=84.55  E-value=0.92  Score=47.62  Aligned_cols=40  Identities=15%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEeccCCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFY   57 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~-----G~~VlvlE~n~~~   57 (523)
                      ++...+||||||+|.+|+.+|+.|+..     .++++++|....+
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            455679999999999999999999863     7899999986443

>PLN02256 arogenate dehydrogenase

Probab=84.55  E-value=1.4  Score=44.69  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|.|||.|.-|...|..|++.|++|.++++++
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            34689999999999999999999999999999875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=84.53  E-value=1  Score=48.75  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .-.|+|+|+|..|+.|+..+...|-+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=84.49  E-value=1  Score=51.57  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~   56 (523)
                      -.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998765

>PRK07831 short chain dehydrogenase; Provisional

Probab=84.44  E-value=1.8  Score=42.28  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             cccEEEECC-C-hhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGa-G-l~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..-++|.|+ | --|..+|..|++.|.+|++.+++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            356899997 5 478999999999999999988764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=84.29  E-value=1.1  Score=47.53  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ...|.|+|-|.+|+++|..|.+.|.+|.+.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            457999999999999999999999999999987765

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=84.27  E-value=1.1  Score=45.19  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999998

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=84.26  E-value=0.88  Score=45.38  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      .-|+|||.|+-|.+.|..|+++|+.|.++++....+....+..
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~   46 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE   46 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence            4689999999999999999999999999999887765555543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=84.25  E-value=1.2  Score=44.65  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||.|.-|...|..|++.|++|+++|++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999874

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.79  E-value=1.1  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .+.|+|+|--|+..|++|+++|..|+++=|.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            578999999999999999999988888877664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=83.76  E-value=1  Score=51.23  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4599999999999999999999999999998763

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06175 L-aspartate oxidase; Provisional

Probab=83.52  E-value=4.2  Score=43.33  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .++||||||+|.+||.||+.++ .|.+|++|||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999975 79999999999988775

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=83.45  E-value=1.5  Score=43.92  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|+|||+|-+|.++|..|++.|. +|.+++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999996 799999874

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=83.44  E-value=1.4  Score=46.50  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .-.|+|+|+|.-|+.+|..|...|.+|+++|.++
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3479999999999999999999999999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.43  E-value=1.3  Score=46.95  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|.|||-|..|.++|..|.+.|++|...|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            3699999999999999999999999999997653

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=83.43  E-value=2  Score=40.24  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009881           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3467999995 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02572 UDP-sulfoquinovose synthase

Probab=83.23  E-value=2.2  Score=45.62  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..|+|.|| |+-|..++.+|++.|++|.++|+.
T Consensus        48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~   80 (442)
T PLN02572         48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL   80 (442)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            45999996 999999999999999999999853

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=83.20  E-value=1.5  Score=44.16  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999999984

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=83.18  E-value=1.2  Score=50.59  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La-~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|..|.-.|..++ ++|++|.++|.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            46899999999999999998 6999999999985

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02712 arogenate dehydrogenase

Probab=83.09  E-value=1.9  Score=48.43  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|.|||.|.-|-..|..|.+.|++|.++++++
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999999999999874

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=83.08  E-value=3.9  Score=42.66  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ...+||+|||||++|+++|+.|+++|.+|+++|+++..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998753

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=83.07  E-value=3.6  Score=43.77  Aligned_cols=38  Identities=26%  Similarity=0.521  Sum_probs=36.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~   61 (523)
                      ||||||+|++|+.||+.++++| .+|+||||++..||..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=83.02  E-value=3.9  Score=40.28  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-----------~G~~i~A~~VI~  332 (523)
                      .++.+.|.+.+...|+++++++.|..+..++ ++++.+|.+.           +..+++|+.||.
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~  167 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD  167 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence            5788889999999999999999999998762 4477777643           124689999883

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=83.02  E-value=1.8  Score=42.35  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ....++|+|+|.-+..+|..++..|++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            346899999999999999999999999999998765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.81  E-value=1.6  Score=44.15  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|++.|.  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            369999999999999999999995  899999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.79  E-value=1.7  Score=44.68  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4679999999999999999999998 89999984

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=82.79  E-value=3.3  Score=46.00  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A~~-VI~  332 (523)
                      ...+...|.+.++..|.+|+++++|++|+.++ +|+++||... +|+  +|+|++ ||+
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil  269 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL  269 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence            35677778788888999999999999999863 6889898653 343  478874 774

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=82.73  E-value=2  Score=43.64  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ....|.|||+|-.|.++|..|+..|.  .+.++|.|.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            44689999999999999999999998  799999864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=82.58  E-value=1.7  Score=44.29  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~   57 (523)
                      ..|.|||+|..|..+|..|+..|. +|.++|.++..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            579999999999999999999996 89999998754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.43  E-value=1.4  Score=47.11  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +|+|+|+|--|..+|..|.+.|++|.++|++..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            689999999999999999999999999999754

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=82.36  E-value=4.7  Score=44.60  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             EeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      +++..+. ..|.++|.+.+...|.+++.++.+.+++.++ +|+++||..   .+|+  .|+|+.||+
T Consensus       118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL  183 (570)
T PRK05675        118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSKATVL  183 (570)
T ss_pred             EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence            3444444 4888999988888999999999999998752 688999864   3565  478999995

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=82.25  E-value=1.6  Score=43.90  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +|-|||.|.-|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999875

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=82.16  E-value=5.6  Score=43.95  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ||||||+|++|+.||+.++++|.+|+++||....||..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877744

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=82.14  E-value=1.4  Score=47.32  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4789999999999999999999999999998754

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.93  E-value=1.5  Score=47.51  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|+|-|.+|+++|..|.+.|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999865

>PRK06847 hypothetical protein; Provisional

Probab=81.90  E-value=5.1  Score=41.39  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ...||+|||||++||++|+.|++.|.+|+|+|+++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998753

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=81.85  E-value=5.2  Score=44.81  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ...|||||||||+.|+.+|+.|++.|++|++||+++.-+|-
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt  109 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT  109 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence            34599999999999999999999999999999999876663

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=81.82  E-value=1.5  Score=49.76  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La-~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|..|.-.|..++ ++|++|.++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999998 8899999999865

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=81.74  E-value=1.8  Score=37.94  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ..|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            469999999999999999999997 68888863

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=81.58  E-value=2  Score=39.58  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009881           24 DLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n   54 (523)
                      .|+|||+|-.|+.+|..|++.|.. +.++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            389999999999999999999984 9999974

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=81.58  E-value=4.1  Score=44.89  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A~-~VI~  332 (523)
                      ...|.+.|.+.++..|+++++++.|++|+.+  +|+++||+.. +|+  +|+|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3578889999999999999999999999887  7889998763 454  47785 4774

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=81.52  E-value=1.4  Score=47.28  Aligned_cols=34  Identities=21%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|||+|.+|+=+|..|++.+++|+++.++.
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            3579999999999999999999999999999865

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=81.43  E-value=1.9  Score=42.72  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..++|+|+|-.|..+|..|++.|.+|.+++++
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46999999999999999999999999999876

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=81.35  E-value=2.3  Score=43.20  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .+..|.|||+|..|.++|..|+..|.  ++.++|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34589999999999999999999986  689999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=81.34  E-value=5.4  Score=39.28  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=38.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~A~~VI~  332 (523)
                      .++-+.|.+.++..|.++++++.|+++..+  ++++ .|.+. ++.+++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            467788888888899999999999999876  4443 34333 456799999884

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=81.24  E-value=5  Score=41.51  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      +.++||||||+|+.|+++|+.|++.|.+|+++|++...+|
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence            4578999999999999999999999999999999887663

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=81.15  E-value=6.6  Score=43.51  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~   60 (523)
                      .++||||||+|++||.||+.++++|  .+|+|+||....||.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            5689999999999999999999875  899999999877764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=81.07  E-value=2  Score=44.14  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ...|+|||+|--|+.+|..|+++|. +++++|..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3579999999999999999999997 88889975

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=81.00  E-value=1.6  Score=46.95  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~-aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            35899999999999 69999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	523
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		1e-30
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		2e-30
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-29
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-29
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-29
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-29
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-29
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		2e-22

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 173/385 (44%), Gaps = 50/385 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALYIQ-----DLSLVCF 484
            KP LLW ALY       D+S  C+
Sbjct: 540 -KPRLLW-ALYFNMRDSSDISRDCY 562

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 173/385 (44%), Gaps = 50/385 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S L+ D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALYIQ-----DLSLVCF 484
            KP LLW ALY       D+S  C+
Sbjct: 540 -KPRLLW-ALYFNMRDSSDISRDCY 562

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 195/427 (45%), Gaps = 59/427 (13%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
           D ++  +I P   +   + + I V  +     V   G ++   S    E    +K +  A
Sbjct: 315 DANSCQIIIPQNQV--NRKSDIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEPA 371
Query: 439 LSALQKL 445
           L  L+ +
Sbjct: 372 LELLEPI 378

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 195/427 (45%), Gaps = 59/427 (13%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
           D ++  +I P   +   + + I V  +     V   G ++   S    E    +K +  A
Sbjct: 315 DANSCQIIIPQNQV--NRKSDIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEPA 371
Query: 439 LSALQKL 445
           L  L+ +
Sbjct: 372 LGLLEPI 378

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 195/427 (45%), Gaps = 59/427 (13%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
           D ++  +I P   +   + + I V  +     V   G ++   S    E    +K +  A
Sbjct: 313 DANSCQIIIPQNQV--NRKSDIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEPA 369
Query: 439 LSALQKL 445
           L  L+ +
Sbjct: 370 LELLEPI 376

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 323 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 369

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 325 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 371

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 161/361 (44%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFMLDADAK--------LCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++     K        +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	6e-80
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	4e-75
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-15
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	5e-75
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	6e-69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  256 bits (654), Expect = 6e-80
 Identities = 93/428 (21%), Positives = 177/428 (41%), Gaps = 49/428 (11%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            +  +  +I P   L  +    I V  +     VC  G ++   S    E ++    L  
Sbjct: 325 SNADSLQIIIPQSQLGRKS--DIYVAIVSDAHNVCSKGHYLAIIST-IIETDKPHIELEP 381

Query: 438 ALSALQKL 445
           A   L  +
Sbjct: 382 AFKLLGPI 389

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  249 bits (635), Expect = 4e-75
 Identities = 100/474 (21%), Positives = 179/474 (37%), Gaps = 56/474 (11%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLV 447
           P        V   RV++L  +   C  G ++++ +  C      ++ L   +  L     
Sbjct: 475 PAEEPGSFAV---RVIELCSSTMTCMKGTYLVHLT--CMSSKTAREDLERVVQKL----- 524

Query: 448 TGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCFASVFSLPKVLFHSFKMY 501
                  +  ++E+ +  KP LLW+  +    S       ++      +     
Sbjct: 525 ---FTPYTEIEAENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGP 575

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 78.8 bits (193), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  244 bits (623), Expect = 5e-75
 Identities = 93/440 (21%), Positives = 175/440 (39%), Gaps = 58/440 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
            R ICI  + +      ++  +I P   L  +    I +  +     V   G ++   SA
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQNQLNRKS--DIYINLVSFQHGVTLKGKYIAIVSA 384

Query: 424 LCDEVNQGKKLLHAALSALQ 443
              E N   K +   L  L 
Sbjct: 385 TV-ETNNPIKEIEKPLELLG 403

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  227 bits (578), Expect = 6e-69
 Identities = 102/426 (23%), Positives = 179/426 (42%), Gaps = 55/426 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            D ++  +I P   +  +    I V  +     V   G ++   S    E    +K +  
Sbjct: 314 NDANSCQIIIPQNQVNRKS--DIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEP 370

Query: 438 ALSALQ 443
           AL  L+
Sbjct: 371 ALGLLE 376

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 119/426 (27%)

Query: 44  SGKSVLHLD-----------PNPFY----GSHFSSLSI----ADLTHFL--NSHSTPSSV 82
           SGK+ + LD               +     +  S  ++      L + +  N  S     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNL----DVSGPRVL--FCADHAVDLMLKSGASHY 136
               L     I     RLL   P    L    +V   +    F  + +  ++L +     
Sbjct: 221 SNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTT----- 272

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKL----VQGH---L 189
             FK +   F+  A     S+      +  D+   L+ K    R   L    +  +   L
Sbjct: 273 -RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 190 SLDESEENNVRISEEDLDSP----FAEFLTKMKLPHKIKSIV----------LY-AIAMA 234
           S+         I+E   D        + +   KL   I+S +          ++  +++ 
Sbjct: 331 SI---------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 235 DYDQEVSEYVLK----------TRDGINRLALYNSSIGRFQNALGALIYPIY-------- 276
                +   +L               +N+L  Y S + +        I  IY        
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLE 440

Query: 277 GQGELPQAF--CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA----SGQDILSHKL 330
            +  L ++               L  P +    DQ   S+ G  L       +  L   +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 331 VLDPSF------------TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378
            LD  F               GS+ ++ QQL + ++ + + DN  K  R +         
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPY-ICDNDPKYERLVN-------- 546

Query: 379 DLSNFL 384
            + +FL
Sbjct: 547 AILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 104/381 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRSLFPEQVTSI 400
            F  L +FPP +  P  + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.97
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.91
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.88
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.88
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.87
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.86
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.86
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.86
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.86
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.86
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.8
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.74
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.72
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.71
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.7
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.68
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.59
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.59
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.59
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.57
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.52
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.49
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.41
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.41
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.36
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.35
3dme_A	369	Conserved exported protein; structural genomics, P	99.13
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.02
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.01
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.96
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.95
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.91
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.9
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.88
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.88
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.87
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.87
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.72
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.72
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.69
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.61
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.52
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.49
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.46
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.44
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.43
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.36
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.34
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.33
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.31
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.3
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.28
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.28
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.28
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.27
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.26
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.26
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.25
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.24
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.24
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.24
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.24
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.23
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.22
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.21
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.21
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.2
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.19
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.19
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.19
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.19
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.18
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.18
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.18
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.18
4dna_A	463	Probable glutathione reductase; structural genomic	98.17
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.17
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.16
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.16
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.16
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.15
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.14
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.13
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.12
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.12
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.12
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.12
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.12
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.11
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.09
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.08
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.08
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.07
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.07
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.07
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.06
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.06
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.06
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.04
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.03
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.03
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.03
3atr_A	453	Conserved archaeal protein; saturating double bond	98.03
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.03
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.03
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.02
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.02
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.02
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.02
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.01
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.01
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.01
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.98
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.98
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.98
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.98
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.96
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.96
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.96
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.96
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.94
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.93
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.93
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.93
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.91
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.91
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.9
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.9
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.9
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.89
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.89
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.88
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.88
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.88
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.87
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.87
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.87
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.86
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.86
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.85
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.84
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.84
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.84
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.84
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.83
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.82
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.81
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.79
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.74
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.73
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.73
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.72
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.71
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.71
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.7
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.68
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.68
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.67
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.66
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.64
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.64
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.62
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.62
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.61
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.61
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.59
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.53
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.52
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.5
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.49
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.44
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.44
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.44
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.43
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.4
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.39
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.38
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.37
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.35
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.34
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.29
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.23
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.17
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.17
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.17
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.95
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.88
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.82
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.68
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.56
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.42
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.41
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.33
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.27
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.9
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.83
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.68
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.66
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.61
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.58
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.47
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.43
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.4
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.36
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.35
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.03
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.97
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.95
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.88
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.69
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.6
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.47
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.42
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.33
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.2
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.2
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.19
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.12
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.11
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	93.03
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	92.99
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.97
1ojt_A	482	Surface protein; redox-active center, glycolysis,	92.96
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.91
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.87
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.86
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.83
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.83
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.83
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	92.8
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	92.68
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.63
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.48
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	92.47
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	92.44
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.37
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	92.33
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.31
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.28
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.28
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.22
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.18
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.15
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.13
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.09
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.09
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.08
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	92.04
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	92.02
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	92.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	92.0
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.99
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	91.98
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	91.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	91.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	91.92
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.92
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.87
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.85
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	91.82
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.81
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.79
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.67
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.57
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	91.47
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.42
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.33
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	91.27
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.27
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	91.25
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.23
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	91.21
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.01
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.0
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	90.99
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.95
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	90.91
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	90.86
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	90.83
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.83
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.78
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.77
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.7
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.69
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.67
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.64
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.43
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.42
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.32
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	90.28
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.16
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.14
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.09
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.07
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.06
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	90.05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	90.05
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.04
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.99
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	89.98
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	89.98
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.96
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	89.93
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	89.87
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.84
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.81
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.79
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.7
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	89.67
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.67
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	89.61
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.55
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	89.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.48
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.46
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	89.45
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.38
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.32
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	89.12
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	89.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.05
3tl2_A	315	Malate dehydrogenase; center for structural genomi	89.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	88.92
3atr_A	453	Conserved archaeal protein; saturating double bond	88.91
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	88.89
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.8
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	88.8
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.74
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.68
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.65
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.65
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	88.61
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	88.58
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.55
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	88.48
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.48
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	88.45
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.37
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	88.33
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	88.28
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	87.97
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	87.89
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	87.8
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.76
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.64
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.62
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	87.58
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.57
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.53
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.52
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	87.5
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	87.44
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	87.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.37
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.32
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.29
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	87.12
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.12
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	87.03
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	86.85
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.82
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.82
1fec_A	490	Trypanothione reductase; redox-active center, oxid	86.78
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.74
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	86.66
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	86.64
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	86.63
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.59
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	86.47
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	86.42
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.3
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.29
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.23
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	86.21
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	86.21
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	86.2
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	86.14
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	86.12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	86.05
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	85.98
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.96
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	85.91
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.89
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	85.84
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.75
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.72
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	85.66
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	85.63
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	85.58
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.57
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	85.57
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.57
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	85.54
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	85.5
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	85.49
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	85.49
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	85.46
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	85.29
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	85.14
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.14
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	85.13
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	85.11
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.09
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	85.05
4dna_A	463	Probable glutathione reductase; structural genomic	85.03
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	84.83
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	84.83
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	84.73
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	84.72
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	84.69
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	84.64
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	84.61
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	84.61
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	84.59
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	84.57
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.54
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.24
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	84.23
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	84.11
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	84.07
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	84.05
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	84.0
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	83.89
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.77
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	83.75
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.71
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.71
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	83.67
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	83.65
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.63
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	83.33
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	83.3
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	83.29
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	83.23
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	83.21
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.07
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	83.07
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	83.06
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	82.87
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	82.84
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	82.82
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	82.66
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.66
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	82.5
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	82.02
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	82.0
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	81.74
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	81.67
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	81.64
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	81.62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	81.6
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	81.53
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	81.42
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	81.41
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	81.17
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	81.15
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	81.0
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	80.95
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	80.91
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	80.82
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	80.7
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	80.56
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	80.52
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	80.51
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	80.5
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	80.49
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	80.46

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=6.3e-60  Score=512.65  Aligned_cols=440  Identities=30%  Similarity=0.499  Sum_probs=342.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCC-------CC---------
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSS-------VC---------   83 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~-------~~---------   83 (523)
                      +.+|||+|||||+.|++.|++|++.|++|+|+|+|++|||.+.++++.++.+|+...+....       +.         
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   85 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhh
Confidence            34799999999999999999999999999999999999999999999999999886653100       00         


Q ss_pred             -----CCCccccceecccc-------------------------------------------------------------
Q 009881           84 -----PDPLYSDVEISNYA-------------------------------------------------------------   97 (523)
Q Consensus        84 -----~~~~~~~~~~~~~~-------------------------------------------------------------   97 (523)
                           .....++.++.++.                                                             
T Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (650)
T 1vg0_A           86 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  165 (650)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             ccccccccccccceeEeecccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 00000011000000                                                             


Q ss_pred             --------------------------------------------cc----ccccCCCceEEecCCCeEEecChHHHHHHh
Q 009881           98 --------------------------------------------SR----LLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (523)
Q Consensus        98 --------------------------------------------~~----~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~  129 (523)
                                                                  ..    .+.+..|+|+||+ ||+++++++.++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL-~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          166 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL-VSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEES-SCCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEee-CCeeeeCCcHHHHHHH
Confidence                                                        00    0112569999999 5999999999999999


Q ss_pred             cCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 009881          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (523)
Q Consensus       130 ~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (523)
                      ++|+.+|++|+.++..|++. +|+++++|+++.++|+++.+++.+||.||+|++++.++... +      ..+..+...|
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~~-p------~~~~~~d~~S  316 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-P------DEYRAYEGTT  316 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-H------HHHHTTTTSB
T ss_pred             HcCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhccC-h------HHHhhhccCC
Confidence            99999999999999988874 88999999999999999999999999999999998876421 1      1123456799


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHH
Q 009881          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (523)
Q Consensus       210 ~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~  289 (523)
                      +.+||+++++++.++.++.+++++.....      .++..++.++.+|+.++++||.+  +++||+||+++|+|+|||++
T Consensus       317 ~~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~s--g~~yp~GG~g~L~qaL~r~~  388 (650)
T 1vg0_A          317 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  388 (650)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhccC--ceEEeCCchhHHHHHHHHHH
Confidence            99999999999999999888776653221      24667777889999999999863  48999999999999999999


Q ss_pred             HHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEE
Q 009881          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (523)
Q Consensus       290 a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i  369 (523)
                      +++||+|+||++|++|.+++++|++++|++.+|++++||+||++|.++ +....              .+...++++|++
T Consensus       389 ~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~l-p~~~~--------------~~~~~~~v~R~i  453 (650)
T 1vg0_A          389 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL-SENTC--------------SRVQYRQISRAV  453 (650)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB-CTTTT--------------TTCCCEEEEEEE
T ss_pred             HHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhc-CHhHh--------------ccccccceEEEE
Confidence            999999999999999999732288999998889999999999988765 32110              111246799999


Q ss_pred             EEecCCCCCCC---CceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhh
Q 009881          370 CITRSSLKPDL---SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLL  446 (523)
Q Consensus       370 ~i~~~~l~~~~---~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~  446 (523)
                      +|+++|+.+..   ...++++|+.+ +  ..++||++++|++++.||+|++|+|++|..  ..+++++|++++++|+...
T Consensus       454 ~i~~~pi~~~~~~~~~~~iiiP~~~-g--~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~~--~~~~~~eLe~~l~~L~~~~  528 (650)
T 1vg0_A          454 LITDGSVLRTDADQQVSILTVPAEE-P--GSFAVRVIELCSSTMTCMKGTYLVHLTCMS--SKTAREDLERVVQKLFTPY  528 (650)
T ss_dssp             EEESSCSSCCSCCCCCEEEEECCSS-T--TSCCEEEEEECGGGTSSCTTCEEEEEEEEC--SSCHHHHHHHHHHHHCBSC
T ss_pred             EEecCCCCCcCCCcceEEEEccCcc-C--CCCCEEEEEeCCCCCCCCCCCEEEEEEeec--CCCHHHHHHHHHHHHhccc
Confidence            99999987542   34688888765 2  367899999999999999999999999873  3488999999999998532


Q ss_pred             hcCCCCCCCCccccccccCCcceEEEEEEEeecccccc-cccccCChhhhcccceEeeeccCcee
Q 009881          447 VTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLVCF-ASVFSLPKVLFHSFKMYLYCGRALDF  510 (523)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (523)
                       .       +++.++.+..+|+|||++||+|.+..+.. .....+|.++      |+|++|..+.
T Consensus       529 -~-------~~~~~~~~~~~~~vLws~~~~~~~~~~~~~~~~~~~~~ni------~~~~~~d~~~  579 (650)
T 1vg0_A          529 -T-------EIEAENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNV------YVCSGPDSGL  579 (650)
T ss_dssp             -S-------CCC-------CCBEEEEEEEEEEECTTCCGGGSSSCCTTE------EEECCCCSSS
T ss_pred             -c-------ccccccccccCCceEEEEEEEeecccccccccccCCCCCE------EEeCCCCCcc
Confidence             1       11222335678999999999998765322 3456789999      9999998775

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.5e-55  Score=466.16  Aligned_cols=378  Identities=24%  Similarity=0.422  Sum_probs=309.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      ++.+|||||||||++|+++|+.|+++|++|+|+|+++++||++++++..++..|+..+...        .          
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~--------~----------   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENI--------P----------   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCC--------C----------
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCc--------c----------
Confidence            3467999999999999999999999999999999999999999999987766666532210        0          


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeec--------cCCceeecCCCHHHHHhcccC
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~--------~dg~~~~vP~s~~~if~~~~l  170 (523)
                      ..+ ...|+|++|+. |+++++.+.++++|.++++.+|++|+.++..|++.        ++|+++++|+++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL~-P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEESS-CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEeec-CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            112 24689999995 99999999999999999999999999999998764        257899999999999999999


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHH
Q 009881          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (523)
Q Consensus       171 s~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (523)
                      ++.+|+++|+|+..+.++.+..+..   .+ ..+..+.|+.+|++++++++.+++++.+++++.... +.  ...++.++
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~---~~-~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~-~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNT---WD-NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLND-DY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchh---hh-cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCC-Cc--ccCCHHHH
Confidence            9999999999999988764321110   00 012346899999999999999999988887765321 11  22478889


Q ss_pred             HHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 009881          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (523)
Q Consensus       251 l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~V  330 (523)
                      +.+++.|+.|+++||.+  +++||+||+++|+|+|+|.+++.||+|+++++|++|..++ +|++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~s--~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~-~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDD-DNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSSC--SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCCC--ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEec-CCeEEEEEECCCcEEECCEE
Confidence            99999999999999854  4899999999999999999999999999999999999842 78889999999999999999


Q ss_pred             EECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCC
Q 009881          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (523)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~  408 (523)
                      |+++++.. .+  +..            ....++++|+|+|+++|+...  .+.++++||+.+++  ..++||++++|++
T Consensus       307 I~a~~~~~-~~--p~~------------~~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~--~~~~iy~~~~s~~  369 (475)
T 3p1w_A          307 ICDPSYVM-HL--KNK------------IKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLN--RKSDIYINLVSFQ  369 (475)
T ss_dssp             EECGGGCT-TS--TTS------------EEEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGT--SSSCEEEEEEEGG
T ss_pred             EECCCccc-cC--ccc------------ccccceEEEEEEEEeccCcccCCCceEEEEeCCcccC--CCCCEEEEEECCC
Confidence            99887651 11  100            012468999999999999763  35678899987764  3578999999999


Q ss_pred             CCcCCCCcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009881          409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (523)
Q Consensus       409 ~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~  444 (523)
                      +++||+|+||+|+||.+++ .+++++|++++++|..
T Consensus       370 ~~~cp~G~~i~~~st~~e~-~~~~~~l~~~l~~l~~  404 (475)
T 3p1w_A          370 HGVTLKGKYIAIVSATVET-NNPIKEIEKPLELLGT  404 (475)
T ss_dssp             GTSSCTTCEEEEEEEECCS-SCHHHHTHHHHHTTCS
T ss_pred             cCcCCCCcEEEEEEeecCC-CCHHHHHHHHHHHhcc
Confidence            9999999999999998764 5899999999999983

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=8e-41  Score=355.36  Aligned_cols=376  Identities=24%  Similarity=0.478  Sum_probs=282.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      +.++||||||||++||+||++|+++|++|+|||+|+++||++++++.++...|++....          ...+    ...
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~----------~~~~----~~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI----------SKEE----RES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCC----------CHHH----HHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCc----------cccC----cch
Confidence            35699999999999999999999999999999999999999999987763222221100          0000    000


Q ss_pred             ccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~  179 (523)
                      .+ ...+.|.+++. |+++++++.+.++|.+.|+.+|++|+.++..|++. +|+.+++|.++.+.+.+..++..+|+.++
T Consensus        75 ~~-~~g~~~~~~l~-P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeeccc-cceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            01 12356889994 99999999999999999999999999998878764 89999999997788888888888999999


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHH
Q 009881          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (523)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~  259 (523)
                      +|++.+.++....+..   ... .+....|+.+|++++++++.+++++.+.+.+...+ +.  ...++..++.++..|+.
T Consensus       152 ~~~~~~~~~~~~~p~~---~~~-~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~-~~--~~~p~~~~~~~~~~~~~  224 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST---HQG-LDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND-DY--LQQPARPSFERILLYCQ  224 (453)
T ss_dssp             HHHHHHHHCBTTBGGG---STT-CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh---hhc-cccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCc-cc--cCCchHHHHHHHHHHHH
Confidence            9999887654321110   000 12457899999999999999999887765543211 00  00145566667788888


Q ss_pred             hhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 009881          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (523)
Q Consensus       260 s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~~  339 (523)
                      ++++++.  +++.||+||+++|+++|++.+++.||+|+++++|++|..+++++++++|++ +|++++||+||+++.....
T Consensus       225 s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            8888764  347799999999999999999999999999999999987521467778886 6889999999986433211


Q ss_pred             CCCcccchhhhhhhhhcccCCCcc-eEEEEEEEecCCCCC--CCCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881          340 GSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (523)
Q Consensus       340 ~l~~~~~~~l~~~~~~l~~~~~~~-~v~r~i~i~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~  416 (523)
                      .               +.   ... ...++++++++++..  ...+..+++|....+  .++.+|+.+.+..++.||+|+
T Consensus       302 ~---------------l~---~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~--~~~~~~v~~~s~~d~~aP~G~  361 (453)
T 2bcg_G          302 K---------------CK---STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGH  361 (453)
T ss_dssp             G---------------EE---EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             h---------------hc---ccCCcceeEEEEEccccCCCCCCccEEEEeCccccC--CCCCEEEEEeCCCCCCCCCCc
Confidence            1               10   123 578889999998863  223556778865544  257899999998778999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHH
Q 009881          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (523)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (523)
                      +++|+++++++ .++++.|+++++.|.
T Consensus       362 ~~~~v~~~~~~-~~~~~~l~~~~~~l~  387 (453)
T 2bcg_G          362 YLAIISTIIET-DKPHIELEPAFKLLG  387 (453)
T ss_dssp             EEEEEEEECCS-SCHHHHTHHHHGGGC
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhh
Confidence            99999998775 467888998888865

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=3.4e-39  Score=340.90  Aligned_cols=370  Identities=27%  Similarity=0.506  Sum_probs=280.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc-ccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      +.++||||||+|++||++|++|+++|++|+|+|+++++||+++|++ +....++.+....        .+..        
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~--------~~~~--------   67 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG--------PPET--------   67 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTC--------CCGG--------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCC--------ChhH--------
Confidence            3569999999999999999999999999999999999999999998 4321111110000        0000        


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                        + ...+.|.+|+ ||++++..+.+.++|.+.|+.+|++|..++..|++. +|+.+.+|.++.+.+.+...+..+|+.+
T Consensus        68 --~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           68 --M-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             --G-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             --h-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence              1 1236789999 599999999999999999999999999988877764 8899999999777888888888899999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      ++|++.+.++....+..   .+ ..++.+.|+.+|+++++.++.+++++.+.+++... .++  ...++..++.++..|+
T Consensus       143 ~~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~-~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKT---FE-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRT-DDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGG---GT-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchh---cc-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccC-CCc--cCCCHHHHHHHHHHHH
Confidence            99999887753221110   01 11345789999999999999999988765444221 111  1235666777788888


Q ss_pred             HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009881          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (523)
Q Consensus       259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~  338 (523)
                      .+++++|.  ++++||+||+++|+++|++.+++.|++|+++++|++|..+  ++++++|+ .+|++++||+||++.... 
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~-  289 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYV-  289 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGC-
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCC-
Confidence            88777774  3478999999999999999999999999999999999887  67777787 588999999999864332 


Q ss_pred             CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCc
Q 009881          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (523)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~  416 (523)
                      +..              +..   ..+..++++++++++...  +.+..+.+|...++  ..+.+|+.+.+.+++.||+|+
T Consensus       290 ~~~--------------~~~---~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~s~d~~~aP~G~  350 (433)
T 1d5t_A          290 PDR--------------VRK---AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGK  350 (433)
T ss_dssp             GGG--------------EEE---EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             ccc--------------ccc---cCcceeEEEEEcCcccccCCCceEEEEeCccccC--CCCCEEEEEECCCCcccCCCC
Confidence            111              000   124667888889887532  24567778765544  357899999997778999999


Q ss_pred             EEEEEEEeeccccchHHHHHHHHHHHH
Q 009881          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (523)
Q Consensus       417 ~vi~~st~~~~~~~~~~~l~~~~~~l~  443 (523)
                      +++++++++++. ++++.|++++++|.
T Consensus       351 ~~~~~~~~~p~~-~~~~~l~~~~~~l~  376 (433)
T 1d5t_A          351 YIAIASTTVETT-DPEKEVEPALGLLE  376 (433)
T ss_dssp             EEEEEEEECCSS-CHHHHTHHHHTTTC
T ss_pred             EEEEEEEecCCC-CHHHHHHHHHHHhh
Confidence            999999988764 67788998888865

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.97  E-value=8.1e-30  Score=273.55  Aligned_cols=343  Identities=14%  Similarity=0.119  Sum_probs=205.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      .+|||||||++||+||++|+++|++|+|||+++++||+++|++.+                                   
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~-----------------------------------   46 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQ-----------------------------------   46 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeC-----------------------------------
Confidence            579999999999999999999999999999999999999997643                                   


Q ss_pred             cCCCceEEecCCCeEEecChHHHHHHhcCC--ccccccccccccee-eeccCCceeecCCCHHHHHhc-ccCChHhHHHH
Q 009881          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~--~~~ylef~~~~~~~-~~~~dg~~~~vP~s~~~if~~-~~ls~~~k~~L  178 (523)
                          +|.+|. ||+++...+.+.+++...+  +.+++++...+..+ +...+|+...++.+....... ..+++.+...+
T Consensus        47 ----G~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           47 ----GFTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             ----TEEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             ----CEEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                466777 5888766666666666554  56788888887766 334578888888876544321 23456777788


Q ss_pred             HHHHHHHHhhcccCcc---cc---ccc---cccccc----cCCcHHHHHHhcCCChhHHHHHHH-HHhccCCCcchhhhh
Q 009881          179 MRFFKLVQGHLSLDES---EE---NNV---RISEED----LDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYV  244 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~---~~---~~~---~~~~~~----~~~s~~efl~~~~l~~~l~~~l~~-~i~l~~~~~~~~~~~  244 (523)
                      .+|++.+.........   ..   ...   ......    ...++.++++++..++.++.++.+ ++........     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~-----  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFA-----  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC-------
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcch-----
Confidence            8888776554321100   00   000   000000    114677888888888888887643 3222111111     


Q ss_pred             cchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE
Q 009881          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (523)
Q Consensus       245 ~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~  324 (523)
                      .+...   .+..++.  ...|     .+||+||+++|+++|++.++..||+|++|++|++|.++  ++++++|++++|++
T Consensus       197 ~~~~~---~~~~~~~--~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSIY---TLIHALE--REWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCTH---HHHHHHH--SCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhhh---hhhhhhh--ccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            12211   1222211  1222     57999999999999999999999999999999999998  88999999999999


Q ss_pred             EEcCEEEEC--CCCCCCCCCcccchhhhhh-hhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCC-----------
Q 009881          325 ILSHKLVLD--PSFTVPGSLASSHQQLQES-FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR-----------  390 (523)
Q Consensus       325 i~A~~VI~~--p~~~~~~l~~~~~~~l~~~-~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~-----------  390 (523)
                      +.||.||++  |..++..|+ +.. +.+.. .+.+.............+.++.+......+.++.-+..           
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll-~~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~  342 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLL-SQH-PAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHD  342 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCTTSCSEEEEEECC------------
T ss_pred             EEcCEEEECCCHHHHHHHhc-ccc-ccchhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhcccccccc
Confidence            999999964  444444442 211 11111 11121111112233333335665543332222221211           


Q ss_pred             CCCCCCCceEEEEEeCCC-CCcCCCCcEEEEEEEeec
Q 009881          391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD  426 (523)
Q Consensus       391 ~~~~~~~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~  426 (523)
                      .++  ..+.+|+...+.. ...+|+|+.++++.+.++
T Consensus       343 ~~~--~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p  377 (501)
T 4dgk_A          343 GLA--EDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVP  377 (501)
T ss_dssp             -CC--CEEEEEEECGGGTCGGGSSTTCEEEEEEEEEC
T ss_pred             ccc--cCCceecccCCCCCCCcCCCCCceEEEEEecC
Confidence            111  2456788777654 488999999999888764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.91  E-value=6.4e-23  Score=215.12  Aligned_cols=332  Identities=13%  Similarity=0.122  Sum_probs=195.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      +||||||||++||+||+.|+++|++|+||||++++||+++++..+                                   
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~-----------------------------------   45 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYK-----------------------------------   45 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEET-----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccC-----------------------------------
Confidence            489999999999999999999999999999999999999997643                                   


Q ss_pred             cCCCceEEecCCCeEEec---ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHH
Q 009881          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~  179 (523)
                          +|.+|. ||+.+..   ...+.+++.+.+..  .++...+....+..+|+...+|...      ..+++.++..+.
T Consensus        46 ----g~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           46 ----GFQLST-GALHMIPHGEDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             ----TEEEES-SSCSEETTTTSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             ----CEEEec-CCeEEEccCCChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                345565 4654432   23566777776663  3333333332222377777776532      235566666666


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-ChhHHHHHHH-HHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-PHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLALY  257 (523)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l-~~~l~~~l~~-~i~l~~~~~~~~~~~~s~~~~l~~~~~~  257 (523)
                      +++......  .           .+..+.++.+|++++++ ++.++.++.. ......  .++  ..+++...+..+..+
T Consensus       113 ~~~~~~~~~--~-----------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMN--K-----------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADS--VSL--SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTT--C-----------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHS--SCG--GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhc--c-----------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCc--ccCCHHHHHHHHHHH
Confidence            555433321  0           01234789999998744 4445554321 111111  111  235555555544433


Q ss_pred             HHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCC
Q 009881          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSF  336 (523)
Q Consensus       258 l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~  336 (523)
                      .    .++   + +.+|++|+++|+++|.+.++..|++|+++++|++|..+  ++++  | +++|++++||+||++ +.+
T Consensus       176 ~----~~~---g-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V-~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG---G-PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--Y-TRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC---S-CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--E-ETTCCEEECSEEEECSCHH
T ss_pred             h----hcC---C-cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--E-EeCCcEEEeCEEEECCCHH
Confidence            2    122   1 46999999999999999999999999999999999865  5554  6 478899999999974 322


Q ss_pred             CCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeCC-CCCcCCC
Q 009881          337 TVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPL  414 (523)
Q Consensus       337 ~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~-~~~~cP~  414 (523)
                      ...+++ + .+.++..+ +.+.+. .+.......+.++++..  ....++ +++..     . .-.+...+. +...+|+
T Consensus       243 ~~~~ll-~-~~~~~~~~~~~~~~~-~~~~~~~v~l~~~~~~~--~~~~~~-~~~~~-----~-~~~i~~~s~~~p~~ap~  310 (421)
T 3nrn_A          243 ETVKLI-G-RDYFDRDYLKQVDSI-EPSEGIKFNLAVPGEPR--IGNTIV-FTPGL-----M-INGFNEPSALDKSLARE  310 (421)
T ss_dssp             HHHHHH-C-GGGSCHHHHHHHHTC-CCCCEEEEEEEEESSCS--SCSSEE-ECTTS-----S-SCEEECGGGTCGGGSCT
T ss_pred             HHHHhc-C-cccCCHHHHHHHhCC-CCCceEEEEEEEcCCcc--cCCeEE-EcCCc-----c-eeeEeccCCCCCCcCCC
Confidence            222221 1 11122211 112111 12234445555676632  223333 33321     1 112333333 3478999


Q ss_pred             CcEEEEEEEeeccccchHHHHHHHHHHHHhh
Q 009881          415 GMFVLYFSALCDEVNQGKKLLHAALSALQKL  445 (523)
Q Consensus       415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~  445 (523)
                      |+.+++++...... +.++.++.+++.|-..
T Consensus       311 G~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~  340 (421)
T 3nrn_A          311 GYTLIMAHMALKNG-NVKKAIEKGWEELLEI  340 (421)
T ss_dssp             TEEEEEEEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEeeccc-cHHHHHHHHHHHHHHH
Confidence            99999998876543 3345567777776654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.91  E-value=2.8e-22  Score=210.08  Aligned_cols=336  Identities=14%  Similarity=0.108  Sum_probs=195.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      +||||||||++||+||+.|+++|++|+|||+++++||+++++..++                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG----------------------------------   46 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC----------------------------------
Confidence            5999999999999999999999999999999999999999976543                                  


Q ss_pred             cCCCceEEecCCCeEEec---ChHHHHHHhcCCcccccccccccceeeec-c--------CCceeecCCCHHHHHhcccC
Q 009881          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-A--------DAKLCSVPDSRAAIFKDKSL  170 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~---~~~lv~lL~~~~~~~ylef~~~~~~~~~~-~--------dg~~~~vP~s~~~if~~~~l  170 (523)
                           |.+|. ||..+..   ...+.+++.+.|....+.... .....+. .        .++.+.++..      ...+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  113 (425)
T 3ka7_A           47 -----FQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFNDF------PSLL  113 (425)
T ss_dssp             -----EEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGGG------GGGS
T ss_pred             -----cEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhhh------hhhC
Confidence                 33444 3433321   125566677766643322211 1111111 0        1333433321      1345


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccCCCcchhhhhcchHH
Q 009881          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRD  249 (523)
Q Consensus       171 s~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~-~i~l~~~~~~~~~~~~s~~~  249 (523)
                      ++.++..+.+.+.....               ....+.++.+|++++..++.++.++.. .....  ..++  ..+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWAL--SLKS--DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHH--SSCG--GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHh--CCCc--ccchHHH
Confidence            56666655544332110               012357899999987667666665431 11111  1121  2355555


Q ss_pred             HHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009881          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (523)
Q Consensus       250 ~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~  329 (523)
                      .+..+..+.    .++   + ..+|++|++.|+++|.+.++..|++|+++++|++|..+  ++++++|++ +|++++||+
T Consensus       175 ~~~~~~~~~----~~~---~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENMY----RFG---G-TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHHH----HHC---S-CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHHH----hcC---C-ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            444444321    222   1 46899999999999999999999999999999999987  677778886 588999999


Q ss_pred             EEEC-CCCCCCCCCcccc-hhhhhh-hhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeC
Q 009881          330 LVLD-PSFTVPGSLASSH-QQLQES-FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG  406 (523)
Q Consensus       330 VI~~-p~~~~~~l~~~~~-~~l~~~-~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s  406 (523)
                      ||++ +.+....++.... .+.+.. ++.+.+ .......+..+.+++++..   ...+.+++..     .....+...|
T Consensus       244 VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~s  314 (425)
T 3ka7_A          244 VISNLGHAATAVLCSEALSKEADAAYFKMVGT-LQPSAGIKICLAADEPLVG---HTGVLLTPYT-----RRINGVNEVT  314 (425)
T ss_dssp             EEECSCHHHHHHHTTTTCCTTTTHHHHHHHHH-CCCBEEEEEEEEESSCSSC---SSSEEECCSS-----SSEEEEECGG
T ss_pred             EEECCCHHHHHHhcCCcccccCCHHHHHHhhC-cCCCceEEEEeecCCCccC---cCEEEECCCh-----hhcceEEecc
Confidence            9975 3322222221110 000111 122211 1133345555567877532   2233444321     1223344444


Q ss_pred             C-CCCcCCCCcEEEEEEEeecc--ccchHHHHHHHHHHHHh
Q 009881          407 G-NLAVCPLGMFVLYFSALCDE--VNQGKKLLHAALSALQK  444 (523)
Q Consensus       407 ~-~~~~cP~G~~vi~~st~~~~--~~~~~~~l~~~~~~l~~  444 (523)
                      . ++..+|+|+.++++......  .+..++.++.+++.|-.
T Consensus       315 ~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  355 (425)
T 3ka7_A          315 QADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKE  355 (425)
T ss_dssp             GTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHH
Confidence            3 35789999999988765422  11223555666665554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.90  E-value=3.1e-22  Score=213.25  Aligned_cols=328  Identities=15%  Similarity=0.161  Sum_probs=193.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      .+||||||+|++||+||..|+++|++|+|+|+++++||+++|++.+                                  
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~----------------------------------   61 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA----------------------------------   61 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET----------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccC----------------------------------
Confidence            5799999999999999999999999999999999999999997643                                  


Q ss_pred             ccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccc--cceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          102 SQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSI--DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~--~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                           ++.+|. |++++.. ...+.+++.+.|+...+.+...  ...+++. +|+.+.+|.+..+.+....++..++..+
T Consensus        62 -----g~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  134 (478)
T 2ivd_A           62 -----GYLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRV  134 (478)
T ss_dssp             -----TEEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHH
T ss_pred             -----Ceeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHH
Confidence                 245666 5777655 3467788888888765543321  1233443 7888889988766666555544433221


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hccCCCcchhhhhcchHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i-~l~~~~~~~~~~~~s~~~~l~~~~~~  257 (523)
                            +...... .        .....+.++.+|+++..-++.++.++...+ ..  +..++  .++++...+..+..+
T Consensus       135 ------~~~~~~~-~--------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~~  195 (478)
T 2ivd_A          135 ------AGELFSR-R--------APEGVDESLAAFGRRHLGHRATQVLLDAVQTGI--YAGDV--EQLSVAATFPMLVKM  195 (478)
T ss_dssp             ------HGGGGCC-C--------CCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHH--HCCCT--TTBBHHHHCHHHHHH
T ss_pred             ------hhhhhcC-C--------CCCCCCCCHHHHHHHhhCHHHHHHHHHHHhcee--ecCCH--HHhhHHHHhHHHHHH
Confidence                  1122110 0        012456899999997433333333332111 11  11121  235555444444332


Q ss_pred             HHhhhc------------------ccCC---CccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEE
Q 009881          258 NSSIGR------------------FQNA---LGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (523)
Q Consensus       258 l~s~g~------------------~g~~---~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~g  316 (523)
                      ....+.                  .+..   .+.+.+|++|++.|+++|.+.+   |++|+++++|++|..+  +++ +.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~~  269 (478)
T 2ivd_A          196 EREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-WR  269 (478)
T ss_dssp             HHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-CE
T ss_pred             HHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-EE
Confidence            211110                  0000   0236799999999999888654   7899999999999875  444 57


Q ss_pred             EEe---CCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCC
Q 009881          317 VRL---ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSL  392 (523)
Q Consensus       317 V~l---~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~  392 (523)
                      |++   .+|++++||+||++ |...+..++    ++++..+....+...+..+.+..+.+++++.+.+....+.+|... 
T Consensus       270 v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll----~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-  344 (478)
T 2ivd_A          270 LIIEEHGRRAELSVAQVVLAAPAHATAKLL----RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEE-  344 (478)
T ss_dssp             EEEEETTEEEEEECSEEEECSCHHHHHHHH----TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGG-
T ss_pred             EEEeecCCCceEEcCEEEECCCHHHHHHHh----hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCC-
Confidence            877   68889999999975 332222221    123322222112223556778888888876433223334455321 


Q ss_pred             CCCCCceEEEEEeCC-CCCcCCCCcEEEEEEE
Q 009881          393 FPEQVTSIRVLQLGG-NLAVCPLGMFVLYFSA  423 (523)
Q Consensus       393 ~~~~~~~v~v~~~s~-~~~~cP~G~~vi~~st  423 (523)
                         ......+...+. ....+|+|..++.+..
T Consensus       345 ---~~~~~~~~~~s~~~~~~~p~g~~~l~~~~  373 (478)
T 2ivd_A          345 ---QRRMLGAIHASTTFPFRAEGGRVLYSCMV  373 (478)
T ss_dssp             ---CCSCCEEEEHHHHCGGGBSTTCEEEEEEE
T ss_pred             ---CCceEEEEEEcccCCCcCCCCCEEEEEEe
Confidence               111222333332 2356788877665544

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.88  E-value=1.5e-21  Score=210.41  Aligned_cols=296  Identities=14%  Similarity=0.091  Sum_probs=182.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ..+||||||||++||+||..|+++|++|+|+|+++++||++++++.+                                 
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~---------------------------------   49 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ---------------------------------   49 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT---------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC---------------------------------
Confidence            45799999999999999999999999999999999999999997642                                 


Q ss_pred             cccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHH
Q 009881          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~  179 (523)
                           ..+.+|+ |++++.. ...+.+++.+.|+..+..+...  ..++..+|+.+.++..    +. ..+++.+...+.
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~--~~~~~~~g~~~~~~~~----~p-~~~~~~~~~~~~  116 (520)
T 1s3e_A           50 -----KVKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEVE--RLIHHVKGKSYPFRGP----FP-PVWNPITYLDHN  116 (520)
T ss_dssp             -----TTSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCSS--EEEEEETTEEEEECSS----SC-CCCSHHHHHHHH
T ss_pred             -----CCccccc-CceEecCCcHHHHHHHHHcCCcceecccCC--ceEEEECCEEEEecCC----CC-CCCCHHHHHHHH
Confidence                 1234566 5777654 3467788888888765543322  1222236666655432    00 012333333444


Q ss_pred             HHHHHHHhhcccCcccccc-ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          180 RFFKLVQGHLSLDESEENN-VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      +++..+.+........... .....++.+.++.+|+++...++.++.++...... .+..++  .++++...+.    ++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~--~~~s~~~~~~----~~  189 (520)
T 1s3e_A          117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNL-CVTAET--HEVSALWFLW----YV  189 (520)
T ss_dssp             HHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHH-HHSSCT--TTSBHHHHHH----HH
T ss_pred             HHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhh-hcCCCh--HHhHHHHHHH----HH
Confidence            4444333322111000000 00012356789999999988888887765422111 011122  2345554433    33


Q ss_pred             Hhhhcc----cC-CCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          259 SSIGRF----QN-ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       259 ~s~g~~----g~-~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ...|.+    .. ..+...++++|+++|+++|++.   .|++|++|++|++|..+  ++++ .|++.+|+++.||+||++
T Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~VI~a  263 (520)
T 1s3e_A          190 KQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKYVISA  263 (520)
T ss_dssp             HTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESEEEEC
T ss_pred             hhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCEEEEC
Confidence            222211    10 1122568999999999988764   48899999999999875  4554 488889999999999975


Q ss_pred             -CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          334 -PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       334 -p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                       |...+..+  .+++++|..+....++..++.+.+..+.+++++-
T Consensus       264 ~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w  306 (520)
T 1s3e_A          264 IPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW  306 (520)
T ss_dssp             SCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGG
T ss_pred             CCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcc
Confidence             43333333  2455566655444344456778888888998863

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.88  E-value=5.7e-21  Score=202.03  Aligned_cols=292  Identities=11%  Similarity=0.108  Sum_probs=173.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      +.++||||||+|++||+||+.|+++|++|+|+|+++++||++.++..++                               
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   51 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG-------------------------------   51 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT-------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC-------------------------------
Confidence            4568999999999999999999999999999999999999999865422                               


Q ss_pred             ccccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                              +.+|+ |++++.. ...+.+++.+.|+..+..+......+. ..+|+.+.+....      ..+++.....+
T Consensus        52 --------~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           52 --------AVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYI-SSAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             --------EEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEE-CTTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             --------ceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEE-eCCCceeeccCCC------CCCChhhHHHH
Confidence                    23444 3554432 346778888888876655443222222 2125554443210      01122222222


Q ss_pred             HHHHHHHHh----hcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhh-hcchHHHHHH
Q 009881          179 MRFFKLVQG----HLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (523)
Q Consensus       179 ~~fl~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~-~~s~~~~l~~  253 (523)
                      .+++..+..    .....+..   ......+.+.++.+|+++++.++.++.++...+ ...+..++  . ++++...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~~  189 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWA---HPLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVLM  189 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGG---STTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCC---CcchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHHH
Confidence            222222111    11100100   000123457899999999888888888654322 12222222  2 3555544332


Q ss_pred             HHHHHHhhhccc----CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009881          254 LALYNSSIGRFQ----NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (523)
Q Consensus       254 ~~~~l~s~g~~g----~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~  329 (523)
                      +    ...|.+.    ...+...+++||++.|++++++.   .|++|+++++|++|..+  +++.+.|++ +|++++||+
T Consensus       190 ~----~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          190 A----ASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             H----HHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHH---HGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             h----ccCCcHhhhccCCCcceEEEcCChHHHHHHHHHh---cCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence            2    2222110    00012468999999999988764   48999999999999876  554245764 788999999


Q ss_pred             EEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      ||++ |...+..+  .+++++|..+....++..++.+.+..+.+++++
T Consensus       260 VI~a~p~~~~~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (453)
T 2yg5_A          260 VILAVPPNLYSRI--SYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPF  305 (453)
T ss_dssp             EEECSCGGGGGGS--EEESCCCHHHHHHGGGEEECCEEEEEEEESSCG
T ss_pred             EEEcCCHHHHhcC--EeCCCCCHHHHHHHhcCCCcceEEEEEEECCCC
Confidence            9975 43333333  234455554433222233556778777788885

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.87  E-value=3.8e-21  Score=203.76  Aligned_cols=348  Identities=13%  Similarity=0.139  Sum_probs=189.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecc
Q 009881           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G------~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (523)
                      .+||||||||++||+||++|+++|      ++|+|||+++++||++++...++                           
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g---------------------------   57 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG---------------------------   57 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTT---------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCC---------------------------
Confidence            489999999999999999999999      99999999999999999975432                           


Q ss_pred             ccccccccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCH--------HHHHh
Q 009881           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (523)
Q Consensus        96 ~~~~~~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~--------~~if~  166 (523)
                                  +.+|. |++.+.. ...+.+++.+.|+...+........+++. +|++..+|...        ...++
T Consensus        58 ------------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           58 ------------YIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             ------------CCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             ------------EEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                        33455 4654433 34677888888887655433233344443 77777776532        11111


Q ss_pred             cccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcc
Q 009881          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (523)
Q Consensus       167 ~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s  246 (523)
                      ...++..++...  ......   ..          .....+.++.+|+++..-.+....++. .+....+..+.  .+++
T Consensus       124 ~~~~~~~~~~~~--~~~~~~---~~----------~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~s  185 (470)
T 3i6d_A          124 TGLFSLSGKARA--AMDFIL---PA----------SKTKDDQSLGEFFRRRVGDEVVENLIE-PLLSGIYAGDI--DKLS  185 (470)
T ss_dssp             ------CCSHHH--HHHHHS---CC----------CSSSSCCBHHHHHHHHSCHHHHHHTHH-HHHHHTTCSCT--TTBB
T ss_pred             cCcCCHHHHHHH--hcCccc---CC----------CCCCCCcCHHHHHHHhcCHHHHHHhcc-chhcEEecCCH--HHhh
Confidence            222222111110  001000   00          123456899999987433333333322 11111122222  2244


Q ss_pred             hHHHHHHHHHHHHhhhccc-----------------CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEec
Q 009881          247 TRDGINRLALYNSSIGRFQ-----------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQ  309 (523)
Q Consensus       247 ~~~~l~~~~~~l~s~g~~g-----------------~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~  309 (523)
                      +...+..+..+....+...                 ...+.+.++++|++.|+++|++.+..  ++|+++++|++|..+ 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-  262 (470)
T 3i6d_A          186 LMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-  262 (470)
T ss_dssp             HHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-
Confidence            4433322211111111000                 00124778999999999988764432  799999999999876 


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC-CceEEEc
Q 009881          310 NSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIF  387 (523)
Q Consensus       310 ~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~-~~~~~~~  387 (523)
                       +++ +.|++.+|++++||+||+. |...+..++  .++++.+..+    ...+..+.+..+.+++++-+.+ ....+++
T Consensus       263 -~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~--~~~~~~~~~~----~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~  334 (470)
T 3i6d_A          263 -GSC-YSLELDNGVTLDADSVIVTAPHKAAAGML--SELPAISHLK----NMHSTSVANVALGFPEGSVQMEHEGTGFVI  334 (470)
T ss_dssp             -SSS-EEEEESSSCEEEESEEEECSCHHHHHHHT--TTSTTHHHHH----TCEEEEEEEEEEEESSTTCCCSSCSSEEEE
T ss_pred             -CCe-EEEEECCCCEEECCEEEECCCHHHHHHHc--CCchhhHHHh----cCCCCceEEEEEEECchhcCCCCCCeEEEc
Confidence             444 5788889989999999964 433322221  1112222222    2235667777778898865332 2334455


Q ss_pred             CCCCCCCCCCceEEEEEeCC--CCCcCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHh
Q 009881          388 PPRSLFPEQVTSIRVLQLGG--NLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQK  444 (523)
Q Consensus       388 p~~~~~~~~~~~v~v~~~s~--~~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~  444 (523)
                      |...     ...+......+  ....+|.|..++.+......     ....++.++.+++.|-.
T Consensus       335 ~~~~-----~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  393 (470)
T 3i6d_A          335 SRNS-----DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKK  393 (470)
T ss_dssp             CSTT-----CCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGG
T ss_pred             cCCC-----CCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHH
Confidence            5332     12333333332  23567888877766542221     11234555555555554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.86  E-value=1.6e-20  Score=201.41  Aligned_cols=360  Identities=12%  Similarity=0.085  Sum_probs=195.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ..+||||||+|++||+||+.|+++|++|+|+|+++++||+++++..+                                 
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~---------------------------------   58 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD---------------------------------   58 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET---------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC---------------------------------
Confidence            45899999999999999999999999999999999999999997542                                 


Q ss_pred             cccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccc-eeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~-~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                            ++.+|. |++++.. ...+.+++.+.|+...+.|..... .+++ .+|+.+.+|.+...++....++..+|..+
T Consensus        59 ------g~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~  130 (504)
T 1sez_A           59 ------GLIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIA-RNGTPVLLPSNPIDLIKSNFLSTGSKLQM  130 (504)
T ss_dssp             ------TEEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEE-SSSSEEECCSSHHHHHHSSSSCHHHHHHH
T ss_pred             ------CeEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEE-ECCeEEECCCCHHHHhccccCCHHHHHHH
Confidence                  244566 5776653 346788888999877666643222 3344 48888899988766666555555444332


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHhccCCCcchhhhhcchHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRLALY  257 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~~~~  257 (523)
                      .  .......... .     ..  ....+.++.+|+++..-++.++.++. +....  +..++  .++++...+..+...
T Consensus       131 ~--~~~~~~~~~~-~-----~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~~  196 (504)
T 1sez_A          131 L--LEPILWKNKK-L-----SQ--VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGT--CGGDP--DSLSMHHSFPELWNL  196 (504)
T ss_dssp             H--THHHHC------------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHH--HSCCG--GGSBHHHHCHHHHHH
T ss_pred             h--HhhhccCccc-c-----cc--cCCCCccHHHHHHHHcCHHHHHHHHHHHHccc--cCCCh--HHhhHHHHhHHHHHH
Confidence            1  1111110000 0     00  12345899999986532333333332 11111  11222  234554433322221


Q ss_pred             HHh------------hhcccC-------------CCccEEeecCCcChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCC
Q 009881          258 NSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (523)
Q Consensus       258 l~s------------~g~~g~-------------~~~~~~~p~gG~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~  311 (523)
                      ...            +...+.             ....+++++||+++|+++|++   .+| ++|++|++|++|..++ +
T Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~~-~  272 (504)
T 1sez_A          197 EKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCSC-T  272 (504)
T ss_dssp             HHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEEC-S
T ss_pred             HHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEecC-C
Confidence            111            011000             001256899999999998875   456 8999999999998872 3


Q ss_pred             Cc----EEEEEeC--CC---cEEEcCEEEEC-CCCCCCCCCcc-cchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-C
Q 009881          312 GS----YKGVRLA--SG---QDILSHKLVLD-PSFTVPGSLAS-SHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-D  379 (523)
Q Consensus       312 g~----~~gV~l~--~G---~~i~A~~VI~~-p~~~~~~l~~~-~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~-~  379 (523)
                      +.    .+.|++.  +|   ++++||+||++ |...+..++.. ...+++...  + ....+..+.+..+.+++++-+ .
T Consensus       273 ~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~--l-~~~~~~~~~~v~l~~~~~~~~~~  349 (504)
T 1sez_A          273 EDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF--I-PEVDYVPLSVVITTFKRENVKYP  349 (504)
T ss_dssp             SSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT--S-CCCCEEEEEEEEEEEEGGGBSSC
T ss_pred             CCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH--H-hcCCCCceEEEEEEEchhhcCCC
Confidence            31    2456554  45   67899999975 33222233210 001111111  1 112234566666667776422 2


Q ss_pred             CCceEEEcCCCCCCCCCCceEEEEEeC--CCCCcCCCCcEEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009881          380 LSNFLVIFPPRSLFPEQVTSIRVLQLG--GNLAVCPLGMFVLYFSALCDEV-----NQGKKLLHAALSALQK  444 (523)
Q Consensus       380 ~~~~~~~~p~~~~~~~~~~~v~v~~~s--~~~~~cP~G~~vi~~st~~~~~-----~~~~~~l~~~~~~l~~  444 (523)
                      .....+.+|.....  ....++...++  ..+..+|+|+.++...+.....     ...++.++.+++.|-.
T Consensus       350 ~~~~~~l~~~~~~~--~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~  419 (504)
T 1sez_A          350 LEGFGVLVPSKEQQ--HGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQ  419 (504)
T ss_dssp             CCSSEEECCGGGGG--GTCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCC--CCCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHH
Confidence            22345556642210  00011111222  2234578898776544432211     1224455555555544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.86  E-value=8.2e-21  Score=202.04  Aligned_cols=329  Identities=14%  Similarity=0.102  Sum_probs=184.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      +||||||||++||+||++|+++|+  +|+|||+++++||+++++...                                 
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~---------------------------------   49 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP---------------------------------   49 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT---------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc---------------------------------
Confidence            699999999999999999999999  999999999999999986432                                 


Q ss_pred             cccCCCceEEecCCCeEEecC----hHHHHHHhcCCccccccccc-----ccceeeeccCCceeecCCCHHHHHhc-ccC
Q 009881          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKD-KSL  170 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~----~~lv~lL~~~~~~~ylef~~-----~~~~~~~~~dg~~~~vP~s~~~if~~-~~l  170 (523)
                           .++.+|. ||+.+...    ..+.+++.+.|+...+....     ....+++. +|+++++|.+...++.. ..+
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~  122 (477)
T 3nks_A           50 -----NGAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPF  122 (477)
T ss_dssp             -----TSCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTS
T ss_pred             -----CCeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchh
Confidence                 1344566 57765443    24667788888764432221     11234443 78888888764333321 111


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHH
Q 009881          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (523)
Q Consensus       171 s~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~  250 (523)
                      ...   .+.+.+   ......          .....+.++.+|+++. +.+.+.+.+...+....+..+.  .++++...
T Consensus       123 ~~~---~~~~~~---~~~~~~----------~~~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~~ls~~~~  183 (477)
T 3nks_A          123 SKP---LFWAGL---RELTKP----------RGKEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNS--RELSIRSC  183 (477)
T ss_dssp             CSC---SSHHHH---TTTTSC----------CCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCT--TTBBHHHH
T ss_pred             hhH---HHHHHH---HhhhcC----------CCCCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCH--HHhhHHHH
Confidence            111   111111   111110          1123467999999863 2233322221111101111222  23556555


Q ss_pred             HHHHHHHHHhhhcc----------------------cCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEe
Q 009881          251 INRLALYNSSIGRF----------------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (523)
Q Consensus       251 l~~~~~~l~s~g~~----------------------g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~  308 (523)
                      +..+.......+..                      ......++++++|++.|+++|++.+...|++|+++++|++|..+
T Consensus       184 ~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~  263 (477)
T 3nks_A          184 FPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ  263 (477)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC
T ss_pred             HHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc
Confidence            44443322111100                      00011367999999999999999999999999999999999876


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEc
Q 009881          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (523)
Q Consensus       309 ~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~  387 (523)
                        +++.+.|++ +|+++.||+||++ |.+.+..++.+..+++.   ..+.+ ..+..+....+.+++++.+.. ..-..+
T Consensus       264 --~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~~---~~l~~-~~~~~~~~v~l~~~~~~~~~~-~~g~l~  335 (477)
T 3nks_A          264 --AEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPLA---RALSA-ITAVSVAVVNLQYQGAHLPVQ-GFGHLV  335 (477)
T ss_dssp             --GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHSCGGGHHHH---HHHHT-CCEEEEEEEEEEETTCCCSSC-SSEEEC
T ss_pred             --CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhccccCHHHH---HHHhc-CCCCcEEEEEEEECCCCCCCC-CceEEc
Confidence              444456764 6778999999975 43332222212222222   22221 234556666677888765433 234455


Q ss_pred             CCCCCCCCCCceEEEEEeCCC--CCcC-CCCcEEEEEEE
Q 009881          388 PPRSLFPEQVTSIRVLQLGGN--LAVC-PLGMFVLYFSA  423 (523)
Q Consensus       388 p~~~~~~~~~~~v~v~~~s~~--~~~c-P~G~~vi~~st  423 (523)
                      |+..     ...+....+.+.  .+.. |+|..++.+..
T Consensus       336 ~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~  369 (477)
T 3nks_A          336 PSSE-----DPGVLGIVYDSVAFPEQDGSPPGLRVTVML  369 (477)
T ss_dssp             CTTT-----CSSEEEEECHHHHCGGGSTTTTCEEEEEEE
T ss_pred             cCCC-----CCCceEEEEeccccCCCCCCCCceEEEEEE
Confidence            5432     122333344332  2222 33777775554

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.86  E-value=2.9e-20  Score=197.94  Aligned_cols=328  Identities=15%  Similarity=0.170  Sum_probs=189.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (523)
                      |..+||||||+|++||++|+.|+++|  ++|+|||+++++||++++....+                             
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g-----------------------------   52 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDG-----------------------------   52 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTT-----------------------------
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCC-----------------------------
Confidence            34689999999999999999999999  99999999999999999875432                             


Q ss_pred             ccccccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCC--------HHHHHhcc
Q 009881           98 SRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDK  168 (523)
Q Consensus        98 ~~~~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s--------~~~if~~~  168 (523)
                                +.+|. |++.+.. ...+.+++.+.|+...+........+++. +|++..+|..        ...+++..
T Consensus        53 ----------~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~  120 (475)
T 3lov_A           53 ----------FTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTT  120 (475)
T ss_dssp             ----------CCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCS
T ss_pred             ----------EEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhcc
Confidence                      33444 4554433 34678888888887655433233344443 7777777653        34555556


Q ss_pred             cCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchH
Q 009881          169 SLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (523)
Q Consensus       169 ~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~  248 (523)
                      .++..+|..+..++   .....         .......+.++.+|+++. ..+.+...+...+....+..+.  .++++.
T Consensus       121 ~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~ls~~  185 (475)
T 3lov_A          121 LLTEEEKQEVADLL---LHPSD---------SLRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNI--DQMSTF  185 (475)
T ss_dssp             SSCHHHHHHHHHHH---HSCCT---------TCCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCT--TTSBST
T ss_pred             CCChhHHHHhhCcc---cCCcc---------cccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCCh--HHcCHH
Confidence            66665554222221   11100         001134568999999863 3333333222111111122222  234554


Q ss_pred             HHHHHHHHHHHhhhcc-------c-------------CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEe
Q 009881          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (523)
Q Consensus       249 ~~l~~~~~~l~s~g~~-------g-------------~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~  308 (523)
                      ..+..+..+....+.+       .             ...+.+.++++|++.|++++++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444443332222110       0             00134788999999999988764432  799999999999876


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEc
Q 009881          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (523)
Q Consensus       309 ~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~  387 (523)
                        +++ +.|++.+| +++||+||+. |.+.+..++  .++++ +.   + ....+..+.+..+.+++++........+++
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll--~~~~~-~~---~-~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~  332 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLL--PDAHL-PE---L-EQLTTHSTATVTMIFDQQQSLPIEGTGFVV  332 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHC--TTSCC-HH---H-HTCCEEEEEEEEEEEECCSSCSSSSSEEEE
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHc--CccCH-HH---H-hcCCCCeEEEEEEEECCcCCCCCCCEEEEe
Confidence              444 56887888 7999999964 433322221  11111 11   1 122356677777888998722222334455


Q ss_pred             CCCCCCCCCCceEEEEEeCCC--CCcCCCCcEEEEEE
Q 009881          388 PPRSLFPEQVTSIRVLQLGGN--LAVCPLGMFVLYFS  422 (523)
Q Consensus       388 p~~~~~~~~~~~v~v~~~s~~--~~~cP~G~~vi~~s  422 (523)
                      |+..     ...+....+.+.  ....|. ..++...
T Consensus       333 ~~~~-----~~~~~~~~~~s~~~~~~~p~-~~~l~~~  363 (475)
T 3lov_A          333 NRRA-----PYSITACTAIDQKWNHSAPD-HTVLRAF  363 (475)
T ss_dssp             CTTS-----SCSEEEEEEHHHHCTTTCTT-EEEEEEE
T ss_pred             cCCC-----CCceEEEEEEcccCCCCCCC-cEEEEEE
Confidence            5432     223444444332  344565 4444443

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.86  E-value=1.9e-21  Score=208.65  Aligned_cols=244  Identities=17%  Similarity=0.163  Sum_probs=142.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      .+||||||||++||+||++|+++ |++|+|||+++++||+++|+..                                  
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~----------------------------------   55 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVT----------------------------------   55 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEEC----------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEe----------------------------------
Confidence            58999999999999999999984 9999999999999999998531                                  


Q ss_pred             cccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccce-eeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~-~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                          ..+|.+|. ||++++... .+.+++.+.+... .+|...++. +++ .+|+++++|... .+   ..+....+...
T Consensus        56 ----~~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~-~~g~~~~~p~~~-~~---~~~~~~~~~~~  124 (513)
T 4gde_A           56 ----PEGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVR-CQGQWVPYPFQN-NI---SMLPKEEQVKC  124 (513)
T ss_dssp             ----TTSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEE-ETTEEEESSGGG-GG---GGSCHHHHHHH
T ss_pred             ----cCCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEE-ECCeEeecchhh-hh---hhcchhhHHHH
Confidence                13466787 688887655 4566666554322 233333332 344 388888888531 11   12222222222


Q ss_pred             -HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH--HHHhccCCCcchhhhhcchHHHH----
Q 009881          179 -MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGI----  251 (523)
Q Consensus       179 -~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~--~~i~l~~~~~~~~~~~~s~~~~l----  251 (523)
                       ..++.......            .......++.+|+.+. +.+.+.+.+.  +.-....  .++  .++++....    
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~--~~~--~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWA--VPT--TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHS--SCG--GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHh-hhhhhhhhhcchhhhhhcc--CCh--HHhhHHHHHHhhc
Confidence             22222111110            0123356788887642 1122222211  1111111  111  112222111    


Q ss_pred             -----HHHHHHHHh--hhcccCCCccEEee-cCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc
Q 009881          252 -----NRLALYNSS--IGRFQNALGALIYP-IYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (523)
Q Consensus       252 -----~~~~~~l~s--~g~~g~~~~~~~~p-~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~  323 (523)
                           ..+...+..  .+.++.. ..+.+| +||++.|+++|++.+...|++++++++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                 111111111  1111111 124454 8999999999999999999999999999999764  44   35578999


Q ss_pred             EEEcCEEEEC
Q 009881          324 DILSHKLVLD  333 (523)
Q Consensus       324 ~i~A~~VI~~  333 (523)
                      ++.||+||++
T Consensus       262 ~~~ad~vI~t  271 (513)
T 4gde_A          262 TIGYKKLVST  271 (513)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEECCEEEEC
Confidence            9999999975

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.86  E-value=4.6e-21  Score=205.20  Aligned_cols=295  Identities=15%  Similarity=0.117  Sum_probs=175.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      +||||||+|++||+||..|+++|++|+|+|+++++||+++|++.+                                   
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~-----------------------------------   84 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-----------------------------------   84 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccC-----------------------------------
Confidence            899999999999999999999999999999999999999997542                                   


Q ss_pred             cCCCceEEecCCCeEEec-ChHHHHHHhcCCccccccccc----ccceeeeccC--CceeecCCCHHHHHhcccCChHhH
Q 009881          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~----~~~~~~~~~d--g~~~~vP~s~~~if~~~~ls~~~k  175 (523)
                          ++.+|+ |++++.. ...+.+++.+.|+...+....    ....+++. +  |+...+|..  +...      .-.
T Consensus        85 ----g~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           85 ----GYPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             ----TEEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             ----CeeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                345676 5777643 346778888888754433321    12233333 3  555555531  1110      001


Q ss_pred             HHHHHHHH----HHHhhcccCccccccccccccccCCcHHHHHHhcC--CChhHHHHHHHHHhccCCCcchhhhhcchHH
Q 009881          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (523)
Q Consensus       176 ~~L~~fl~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~--l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~  249 (523)
                      ..+.+|++    ........ +...........+.+.|+.+||++++  .++.++.++...+... +..+.  ..+++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLPF-PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCSC-TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCCC-CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11222322    11111000 00000000012345789999999887  8887776654322111 11111  2245554


Q ss_pred             HHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 009881          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (523)
Q Consensus       250 ~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~  328 (523)
                      .+..+......+..+... ...+++++|+++|+++|.+.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMDC-LMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHHH-HHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHhh-hceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            443322110001000000 1145789999999999999998888 999999999999875  444 56888889899999


Q ss_pred             EEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      +||+. |...+..+  .+++++|..+....+...+..+.+..+.+++++
T Consensus       303 ~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          303 RVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            99964 33333333  234555554433222233566778888888865

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.80  E-value=3.1e-19  Score=190.68  Aligned_cols=343  Identities=13%  Similarity=0.117  Sum_probs=187.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCcccc-cccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      ..+||+|||+|++||++|..|+++| ++|+|+|+++++||+++++ ..                                
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~--------------------------------   55 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDE--------------------------------   55 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECT--------------------------------
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecC--------------------------------
Confidence            4689999999999999999999999 8999999999999999984 22                                


Q ss_pred             cccccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~  177 (523)
                             .++.+|. |++.++... .+.+++.+.. .++.....  ..+++ .+|+++.+|...  .+  ..++..++..
T Consensus        56 -------~g~~~~~-g~~~~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~-~~g~~~~~P~~~--~~--~~l~~~~~~~  119 (484)
T 4dsg_A           56 -------NGFTWDL-GGHVIFSHYQYFDDVMDWAV-QGWNVLQR--ESWVW-VRGRWVPYPFQN--NI--HRLPEQDRKR  119 (484)
T ss_dssp             -------TSCEEES-SCCCBCCSBHHHHHHHHHHC-SCEEEEEC--CCEEE-ETTEEEESSGGG--CG--GGSCHHHHHH
T ss_pred             -------CCcEEee-CCcccccChHHHHHHHHHHh-hhhhhccC--ceEEE-ECCEEEEeCccc--hh--hhCCHHHHHH
Confidence                   2345666 466665544 4445555433 33332222  22333 378999888421  11  2233333322


Q ss_pred             -HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH----HHHHHHhccCCCcchhhhhcchHHH--
Q 009881          178 -LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS----IVLYAIAMADYDQEVSEYVLKTRDG--  250 (523)
Q Consensus       178 -L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~----~l~~~i~l~~~~~~~~~~~~s~~~~--  250 (523)
                       +..++.. . . .           .....+.++.+|+.+. +.+.+.+    .+...+..    .++  .++++.+.  
T Consensus       120 ~~~~ll~~-~-~-~-----------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~----~~~--~~ls~~~~~~  178 (484)
T 4dsg_A          120 CLDELVRS-H-A-R-----------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWA----VPP--CLMSTEWVEE  178 (484)
T ss_dssp             HHHHHHHH-H-H-C-----------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHS----SCG--GGBCSSSCTT
T ss_pred             HHHHHHHH-H-h-c-----------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcC----CCH--HHhcHHHHhc
Confidence             2233332 1 0 0           0123467899999853 2222211    11112211    111  12333221  


Q ss_pred             ------HHH-HHHHHHhhhc--ccCCCccEEeec-CCcChHHHHHHHHHHHcCcEEEcC--CceeEEEEecCCCcEEEEE
Q 009881          251 ------INR-LALYNSSIGR--FQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGVR  318 (523)
Q Consensus       251 ------l~~-~~~~l~s~g~--~g~~~~~~~~p~-gG~~eL~qal~r~~a~~Gg~~~L~--~~V~~I~~~~~~g~~~gV~  318 (523)
                            +.. +...+.....  ++ ..+.|.||. ||++.|+++|++.+..  ..|+++  ++|++|..+  ++   +|+
T Consensus       179 r~~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v~  250 (484)
T 4dsg_A          179 RVAPVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TIT  250 (484)
T ss_dssp             TSCCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EEE
T ss_pred             cccCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EEE
Confidence                  111 1111111100  11 123478886 8999999988874432  289999  569999764  44   355


Q ss_pred             eCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC-CCceEEEcCCCCCCCCC
Q 009881          319 LASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSLFPEQ  396 (523)
Q Consensus       319 l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~-~~~~~~~~p~~~~~~~~  396 (523)
                      +++|+++.||+||++ |...+.+++.+..++++...........+..+....+.++.+.... +....+.+|....    
T Consensus       251 ~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~----  326 (484)
T 4dsg_A          251 FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTS----  326 (484)
T ss_dssp             ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTC----
T ss_pred             ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCC----
Confidence            689999999999975 3322222211101112222222112223455566666678764321 2345667775432    


Q ss_pred             CceEEEEEeCCC-CCcCCCCcEEEEEEEeecc--ccchHHHHHHHHHHHHhh
Q 009881          397 VTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE--VNQGKKLLHAALSALQKL  445 (523)
Q Consensus       397 ~~~v~v~~~s~~-~~~cP~G~~vi~~st~~~~--~~~~~~~l~~~~~~l~~~  445 (523)
                       +...+..+++- ...+|+|+.++.+......  ..+.+++++.+++-|...
T Consensus       327 -~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~  377 (484)
T 4dsg_A          327 -PFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLAS  377 (484)
T ss_dssp             -SCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHT
T ss_pred             -eEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHc
Confidence             23355556554 4679999888876543321  113356777777777654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.75  E-value=9.9e-18  Score=180.46  Aligned_cols=278  Identities=15%  Similarity=0.162  Sum_probs=151.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      +..+||||||||++||+||..|+++| ++|+|||+++++||+++|+...                               
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------------------   54 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------------------   54 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------------------
Confidence            45689999999999999999999999 9999999999999999986531                               


Q ss_pred             cccccCCCceEEecCCCeEEecC--hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCCh-HhH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL-MEK  175 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~--~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~-~~k  175 (523)
                             .++.+|+ |++++...  .++.+++.+.++...      ...+.+. +|+...++.....+........ ...
T Consensus        55 -------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (516)
T 1rsg_A           55 -------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDG------RTRFVFD-DDNFIYIDEERGRVDHDKELLLEIVD  119 (516)
T ss_dssp             -------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHC------CCCEECC-CCCCEEEETTTEECTTCTTTCHHHHH
T ss_pred             -------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCc------ceeEEEC-CCCEEEEcCCCccccccHHHHHHHHH
Confidence                   2345677 58887542  356665555443211      0011111 2332222221100000000000 001


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHh---c-cCCCcchhhhhc
Q 009881          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIA---M-ADYDQEVSEYVL  245 (523)
Q Consensus       176 ~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~------~l~~~l~~~l~~~i~---l-~~~~~~~~~~~~  245 (523)
                      ..+.++...   ....          .....+.++.+|++++      .+++....++...+.   . .....    ..+
T Consensus       120 ~~~~~~~~~---~~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~----~~~  182 (516)
T 1rsg_A          120 NEMSKFAEL---EFHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW----KLL  182 (516)
T ss_dssp             HHHHHHHHH---HC-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT----TTS
T ss_pred             HHHHHHHHH---Hhhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh----HHC
Confidence            112222221   1000          0112457888877642      233322222111110   0 00011    112


Q ss_pred             chHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEE
Q 009881          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI  325 (523)
Q Consensus       246 s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i  325 (523)
                      +....          +....   +...++++ ++.|+++|++.+  .++.|++|++|++|..+  ++..+.|++.+|+++
T Consensus       183 s~~~~----------~~~~~---~~~~~~~g-~~~l~~~l~~~l--~~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~~  244 (516)
T 1rsg_A          183 SAKDT----------YFGHQ---GRNAFALN-YDSVVQRIAQSF--PQNWLKLSCEVKSITRE--PSKNVTVNCEDGTVY  244 (516)
T ss_dssp             BHHHH----------CCCCS---SCCEEESC-HHHHHHHHHTTS--CGGGEETTCCEEEEEEC--TTSCEEEEETTSCEE
T ss_pred             ChHHH----------Hhhcc---CcchhhhC-HHHHHHHHHHhC--CCCEEEECCEEEEEEEc--CCCeEEEEECCCcEE
Confidence            22211          00111   11346777 888888776533  24689999999999875  233368888899999


Q ss_pred             EcCEEEEC-CCCCCCCC---------CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009881          326 LSHKLVLD-PSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (523)
Q Consensus       326 ~A~~VI~~-p~~~~~~l---------~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~  378 (523)
                      +||+||++ |...+...         .+.+.|++|..+....+...++.+.+.++.+++++=+
T Consensus       245 ~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~  307 (516)
T 1rsg_A          245 NADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWS  307 (516)
T ss_dssp             EEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred             ECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence            99999975 32222100         1245667777666654555678889999999998744

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.74  E-value=1.3e-16  Score=169.62  Aligned_cols=287  Identities=11%  Similarity=0.103  Sum_probs=155.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      ..+||+|||+|++||++|..|++.|+ +|+|+|+++++||++++....                                
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~--------------------------------   50 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA--------------------------------   50 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET--------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccC--------------------------------
Confidence            46899999999999999999999999 899999999999999986542                                


Q ss_pred             ccccCCCceEEecCCCeEEec-----ChHHHHHHhc-CCccccc-ccccccceeeeccCCceeecCCCHHHHHhcccCCh
Q 009881          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~-----~~~lv~lL~~-~~~~~yl-ef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~  172 (523)
                             .+.+|+ |++++..     ...+.+++.+ .++..+. .+... ..+++..+|+.+..+.. ...+.      
T Consensus        51 -------~~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           51 -------GINVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             -------TEEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             -------CcEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                   244566 5777652     2357777877 6775542 22221 11233335655432110 01110      


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHH--HHHhcC---CChhHHHHHHHHH-hccCCCcchhhhhcc
Q 009881          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMK---LPHKIKSIVLYAI-AMADYDQEVSEYVLK  246 (523)
Q Consensus       173 ~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e--fl~~~~---l~~~l~~~l~~~i-~l~~~~~~~~~~~~s  246 (523)
                       ....+.+|.+.+.....           ..++.+.++.+  ++.+..   ....+..++.... .+. +..+.  ...+
T Consensus       115 -~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s  179 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLH-----------ASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYE-FAEPP--RVTS  179 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSC-----------TTCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHH-HSSCG--GGBB
T ss_pred             -HHHHHHHHHHHHHHhhc-----------cccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhh-hcccc--cccc
Confidence             00112222222211110           01223445443  554322   1111222221111 000 01110  1122


Q ss_pred             hHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHc--------CcEEEcCCceeEEEEecCCCcEEEEE
Q 009881          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGVR  318 (523)
Q Consensus       247 ~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~--------Gg~~~L~~~V~~I~~~~~~g~~~gV~  318 (523)
                      ...... ...|    ..++.. ..+.++++|++.|+++|++.+...        |++|+++++|++|..+  ++++ .|+
T Consensus       180 ~~~~~~-~~~~----~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~v-~v~  250 (472)
T 1b37_A          180 LQNTVP-LATF----SDFGDD-VYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGGV-TVK  250 (472)
T ss_dssp             STTTSS-CHHH----HHHCSE-EEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSCE-EEE
T ss_pred             hhhccc-cccc----cccCCc-eeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCcE-EEE
Confidence            211100 0011    112211 113345899999999998765443        7899999999999876  4454 588


Q ss_pred             eCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009881          319 LASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (523)
Q Consensus       319 l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~  379 (523)
                      +.+|++++||+||++ |...+..+...+.+++|+.+....+...++.+.+..+.+++|+-+.
T Consensus       251 ~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~  312 (472)
T 1b37_A          251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE  312 (472)
T ss_dssp             ETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred             ECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence            889999999999975 3332223222345566654433222233566778888889887543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.72  E-value=1.3e-16  Score=167.29  Aligned_cols=284  Identities=15%  Similarity=0.107  Sum_probs=156.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      +||||||||++|++||..|+++|++|+|||+++++||++.+.+..-                                  
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c----------------------------------   47 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN----------------------------------   47 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC----------------------------------
Confidence            7999999999999999999999999999999999999998865321                                  


Q ss_pred             cCCCceEEecCCCeEEec--ChHHHHHHhcCCcccccccccccceeee-ccCCceeec-CCCHHHHHhcccCChHhHHHH
Q 009881          103 QHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~--~~~lv~lL~~~~~~~ylef~~~~~~~~~-~~dg~~~~v-P~s~~~if~~~~ls~~~k~~L  178 (523)
                        ...+.+++ |++++..  ...+.+++.+.|+........  ....+ ..+++.... |... ...      ..-+..+
T Consensus        48 --ipg~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~  115 (431)
T 3k7m_X           48 --VPGLRVEI-GGAYLHRKHHPRLAAELDRYGIPTAAASEF--TSFRHRLGPTAVDQAFPIPG-SEA------VAVEAAT  115 (431)
T ss_dssp             --STTCEEES-SCCCBCTTTCHHHHHHHHHHTCCEEECCCC--CEECCBSCTTCCSSSSCCCG-GGH------HHHHHHH
T ss_pred             --CCCceEec-CCeeeCCCCcHHHHHHHHHhCCeeeecCCC--CcEEEEecCCeecCCCCCCH-HHH------HHHHHHH
Confidence              01233455 3555533  335666666666543221111  11111 112222211 1111 110      0112223


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      .+++..........+..   .....+ .+.++.+|+++.+.++..+.++...+... +..+.  .+++....+..    +
T Consensus       116 ~~l~~~~~~~~~~~~~~---~~~~~~-~d~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~----~  184 (431)
T 3k7m_X          116 YTLLRDAHRIDLEKGLE---NQDLED-LDIPLNEYVDKLDLPPVSRQFLLAWAWNM-LGQPA--DQASALWMLQL----V  184 (431)
T ss_dssp             HHHHHHHTTCCTTTCTT---SSSCGG-GCSBHHHHHHHHTCCHHHHHHHHHHHHHH-HSSCT--TTSBHHHHHHH----H
T ss_pred             HHHHHHHHhcCCCCCcc---Ccchhh-hcCCHHHHHHhcCCCHHHHHHHHHHHHHh-cCCCh--hhhhHHHHHHH----H
Confidence            34444333321111100   001122 23899999999888887776543211110 11111  12344433322    2


Q ss_pred             Hhhh------cccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          259 SSIG------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       259 ~s~g------~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ...+      ...   ... ++.+|++.+.+++.   +..| +|+++++|++|..+  +++ +.|++.+|++++||+||+
T Consensus       185 ~~~~~~~~~~~~~---~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~  253 (431)
T 3k7m_X          185 AAHHYSILGVVLS---LDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIV  253 (431)
T ss_dssp             HHTTSCHHHHHHT---CCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEE
T ss_pred             HhcCCccceeecc---hhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEE
Confidence            2211      111   113 67899998888664   4566 99999999999765  444 468888898899999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      . |...+..+  .+.|+++..+........++...+...-++.++
T Consensus       254 a~~~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~  296 (431)
T 3k7m_X          254 ATPMNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAE  296 (431)
T ss_dssp             CSCGGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred             ecCcchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence            5 32222222  234455543333222233555677777778876

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.71  E-value=1.6e-16  Score=166.37  Aligned_cols=247  Identities=14%  Similarity=0.154  Sum_probs=137.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      ..+||||||||++||+||..|+++| ++|+|+|+++++||+++|++.++                               
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G-------------------------------   53 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG-------------------------------   53 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC-------------------------------
Confidence            4589999999999999999999999 99999999999999999976432                               


Q ss_pred             ccccCCCceEEecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                              +.+|+ |++++... ..+.+++.+.|+...  .......+. ..+|+.. +|..  +....    ......+
T Consensus        54 --------~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~-~~~g~~~-~~~~--~~~~~----~~~~~~~  114 (424)
T 2b9w_A           54 --------RRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFL-HEDGEIY-VPEK--DPVRG----PQVMAAV  114 (424)
T ss_dssp             --------EECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEE-CTTSCEE-CGGG--CTTHH----HHHHHHH
T ss_pred             --------ccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeE-cCCCCEe-cccc--Ccccc----hhHHHHH
Confidence                    33444 46654333 456777777775421  111111222 2356543 2211  00000    0011122


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      .++...+.......... .......++...|+.+|+++.+.+. +.+.+...+....+. ++  .+.++...+..+... 
T Consensus       115 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~~~~~~~-  188 (424)
T 2b9w_A          115 QKLGQLLATKYQGYDAN-GHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVLKYLDFV-  188 (424)
T ss_dssp             HHHHHHHHTTTTTTTSS-SSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHHHHSCHH-
T ss_pred             HHHHHHHhhhhhhcccc-cchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHHHhhhHh-
Confidence            33333222211100000 0000112345689999999887764 333322111111121 11  224444332211110 


Q ss_pred             HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..+...+   +..+++.+|++++++++.   +..+..++++++|++|..+  ++++ .|++.+|+ ++||+||++
T Consensus       189 ~~~~~~~---~~~~~~~~g~~~l~~~l~---~~l~~~v~~~~~V~~i~~~--~~~v-~v~~~~g~-~~ad~Vv~a  253 (424)
T 2b9w_A          189 TMMSFAK---GDLWTWADGTQAMFEHLN---ATLEHPAERNVDITRITRE--DGKV-HIHTTDWD-RESDVLVLT  253 (424)
T ss_dssp             HHHHHHH---TCCBCCTTCHHHHHHHHH---HHSSSCCBCSCCEEEEECC--TTCE-EEEESSCE-EEESEEEEC
T ss_pred             hhhcccC---CceEEeCChHHHHHHHHH---HhhcceEEcCCEEEEEEEE--CCEE-EEEECCCe-EEcCEEEEC
Confidence            0011111   113478899999999775   4567789999999999875  4554 58877775 899999965

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.70  E-value=4.5e-16  Score=166.53  Aligned_cols=284  Identities=12%  Similarity=0.083  Sum_probs=155.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ..+||||||||++||++|..|++.|++|+|+|+++++||++.++....                                
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~--------------------------------   79 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE--------------------------------   79 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT--------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC--------------------------------
Confidence            458999999999999999999999999999999999999998865210                                


Q ss_pred             cccCCCceEEecCCCeEEecCh-HHHHHHhcCCccccccccccc-ceeeeccCCceeecCC---CHHHHHhcccCChHhH
Q 009881          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPD---SRAAIFKDKSLGLMEK  175 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~-~~~~~~~dg~~~~vP~---s~~~if~~~~ls~~~k  175 (523)
                           ..+.+|+ |+.++.... .+.+++.+.|+... .|...+ ..++. .+|...+.+.   .. ..+. ..+.+.++
T Consensus        80 -----~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~-~~~~~~~~  149 (498)
T 2iid_A           80 -----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYF-IKNIRKKVGEVKKDP-GLLK-YPVKPSEA  149 (498)
T ss_dssp             -----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEE-ETTEEEEHHHHHHCG-GGGC-CCCCGGGT
T ss_pred             -----CCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEE-eCCeeecccccccCc-cccc-cCCCcccc
Confidence                 2244555 466554433 45666767776421 221111 11111 1343222110   00 0000 00111110


Q ss_pred             -----H----HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHHHhccCCCcchhhhhc
Q 009881          176 -----N----QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVL  245 (523)
Q Consensus       176 -----~----~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~  245 (523)
                           .    .+.+++..+....        .......+.+.++.+|+++.+ +++..+..+...+...  ...    ..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~----~~  215 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED--SGY----YV  215 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCG--GGT----TS
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcc--cch----hH
Confidence                 0    1112222111110        000112345678999999866 5665554432211100  000    00


Q ss_pred             chHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--
Q 009881          246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--  323 (523)
Q Consensus       246 s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~--  323 (523)
                      +...++....    ... .+   ..+.++++|++.|+++|.+.+   +..|+++++|++|..+  +++ +.|++.+|+  
T Consensus       216 ~~~~~~~~~~----~~~-~~---~~~~~~~gG~~~l~~~l~~~l---~~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~~  281 (498)
T 2iid_A          216 SFIESLKHDD----IFA-YE---KRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQN--DQK-VTVVYETLSKE  281 (498)
T ss_dssp             BHHHHHHHHH----HHT-TC---CCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEEC--SSC-EEEEEECSSSC
T ss_pred             HHHHHHHHHh----ccc-cC---cceEEeCCcHHHHHHHHHHhc---ccccccCCEEEEEEEC--CCe-EEEEEecCCcc
Confidence            1111111111    111 11   126789999999999887644   4489999999999876  444 467666665  


Q ss_pred             --EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          324 --DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       324 --~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                        +++||+||++ |...+..+  .++|++|..+....+...++.+.+..+.+++++
T Consensus       282 ~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~  335 (498)
T 2iid_A          282 TPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKF  335 (498)
T ss_dssp             CCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             cceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCC
Confidence              5899999975 33322332  244556665444323334667888888889886

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.68  E-value=4.3e-16  Score=166.27  Aligned_cols=299  Identities=14%  Similarity=0.110  Sum_probs=152.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      ..+||||||||++||+||..|+++|++|+|+|+++++||+++++....  .+....+.                    ..
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~--------------------~~   67 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGE--------------------TQ   67 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSC--------------------EE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccch--------------------hh
Confidence            468999999999999999999999999999999999999998876432  11111100                    00


Q ss_pred             cccCCCceEEecCCCeEEecChHHHHHHhcCCccccccccccc-ceeee-ccC----CceeecCCCHHHHHhcccCChHh
Q 009881          101 LSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID-ATFML-DAD----AKLCSVPDSRAAIFKDKSLGLME  174 (523)
Q Consensus       101 ~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~-~~~~~-~~d----g~~~~vP~s~~~if~~~~ls~~~  174 (523)
                      .......+.++. |+..++....+.+++.+.|+... .+.... ..+++ ..+    |+...+|....+.+         
T Consensus        68 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------  136 (489)
T 2jae_A           68 KCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTF---------  136 (489)
T ss_dssp             ECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHH---------
T ss_pred             hhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhhh---------
Confidence            001123455676 57766655578888888887422 122111 12333 212    54444332111100         


Q ss_pred             HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh--------HHHHHHH--HHhccCCCcchhhhh
Q 009881          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK--------IKSIVLY--AIAMADYDQEVSEYV  244 (523)
Q Consensus       175 k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~--------l~~~l~~--~i~l~~~~~~~~~~~  244 (523)
                       ..+..++....+.... .      +...+..+.++.+|+++++....        +..++..  .+.+.  ......  
T Consensus       137 -~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  204 (489)
T 2jae_A          137 -GYMSELLKKATDQGAL-D------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNF--GTEKKP--  204 (489)
T ss_dssp             -HHHHHHHHHHHHHTTT-T------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCC--CEECCC--
T ss_pred             -ccHHHHHHHHHhcccc-c------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCccccc--CCCCCC--
Confidence             0111111111110000 0      00011123467778775322100        0000000  00000  000000  


Q ss_pred             cchHHHHHH--HHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEeCC
Q 009881          245 LKTRDGINR--LALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLAS  321 (523)
Q Consensus       245 ~s~~~~l~~--~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~  321 (523)
                      ... ..+..  +..++........ .+.+.++++|++.|+++|++.   ++ +.|+++++|++|..+  +++ +.|++.+
T Consensus       205 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~---l~~~~i~~~~~V~~i~~~--~~~-v~v~~~~  276 (489)
T 2jae_A          205 FAM-QEVIRSGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDR---IGTDNIVFGAEVTSMKNV--SEG-VTVEYTA  276 (489)
T ss_dssp             CCH-HHHHHHTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHH---HCGGGEETTCEEEEEEEE--TTE-EEEEEEE
T ss_pred             cCH-HHHhhhhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHh---cCCCeEEECCEEEEEEEc--CCe-EEEEEec
Confidence            000 00000  0011111000111 123678999999999988764   45 889999999999886  454 4576666


Q ss_pred             C---cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009881          322 G---QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       322 G---~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      |   ++++||+||++ |...+..+.  .  ++|..+....+...+..+.+..+.+++++
T Consensus       277 g~~~~~~~ad~vI~a~p~~~l~~l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          277 GGSKKSITADYAICTIPPHLVGRLQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             TTEEEEEEESEEEECSCHHHHTTSE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             CCeEEEEECCEEEECCCHHHHHhCc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence            6   67999999975 433333332  1  23332222212223566788888888875

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.59  E-value=3e-14  Score=147.52  Aligned_cols=309  Identities=13%  Similarity=0.124  Sum_probs=167.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc-ccchhhhhccCCCCCCCCCCCccccceecccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (523)
                      ....+||+|||||++||++|..|+++|++|+|+|+++++||++.+.. .++                             
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G-----------------------------   76 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG-----------------------------   76 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTS-----------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCC-----------------------------
Confidence            44679999999999999999999999999999999999999998864 221                             


Q ss_pred             ccccccCCCceEE-ecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHH--hcccCChH
Q 009881           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF--KDKSLGLM  173 (523)
Q Consensus        98 ~~~~~~~~r~f~l-dl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if--~~~~ls~~  173 (523)
                                +.+ |. |+++++.. ..+.+++.+.+...  .+  ....+++. +|+++++|.+...+.  ....+++.
T Consensus        77 ----------~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           77 ----------VLIHPY-GPHIFHTNSKDVFEYLSRFTEWR--PY--QHRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ----------CEECTT-SCCCCEESCHHHHHHHHTSCCEE--EC--CCBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ----------ceEeec-CCcccCCChHHHHHHHHHhhhcc--cc--cccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                      222 33 56666543 46677777666321  11  12233443 899999998764321  12223332


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhccCCCcchhhhhcchHHHH
Q 009881          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGI  251 (523)
Q Consensus       174 ~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~-~l~-~~i~l~~~~~~~~~~~~s~~~~l  251 (523)
                         .+..++..   . .           .....+.++.+|+.+. +.+.+.+ ++. +....  +..++  +++|+... 
T Consensus       141 ---~~~~~l~~---~-~-----------~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~--~~~~~--~~Lsa~~~-  196 (397)
T 3hdq_A          141 ---QVEEFFAS---V-A-----------EKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQ--WGLDP--SELDASVT-  196 (397)
T ss_dssp             ---HHHHHHHH---H-C-----------CCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHH--HSSCG--GGSBTTTG-
T ss_pred             ---HHHHHHhh---c-c-----------cCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCch--hCCCH--HHHHHHHH-
Confidence               22333321   1 0           1123467999999742 2233333 222 22122  22232  33555321 


Q ss_pred             HHHHHHHHhhhcccCC--CccE-EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 009881          252 NRLALYNSSIGRFQNA--LGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (523)
Q Consensus       252 ~~~~~~l~s~g~~g~~--~~~~-~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~  328 (523)
                      .++..    ...+.+.  .+.+ .+|++|.+.|.++|.   +..|++|+||++|.++                ++++.+|
T Consensus       197 ~Rvp~----~~~~d~~yf~~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~~----------------~~~~~~d  253 (397)
T 3hdq_A          197 ARVPT----RTNRDNRYFADTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYREI----------------ADFIPFQ  253 (397)
T ss_dssp             GGSCC----CSSCCCBSCCCSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGGT----------------TTTSCEE
T ss_pred             HhcCc----ccccCccchhhhheeccCCCHHHHHHHHH---hccCCEEEECCeEEec----------------cccccCC
Confidence            11110    0001110  0124 379999999988764   4579999999999832                2335588


Q ss_pred             EEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeCCC
Q 009881          329 KLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (523)
Q Consensus       329 ~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~  408 (523)
                      +||.....  ..+   ++..       + ....+..+......++.+-.+  ....+.+|...      +.-++.++.+-
T Consensus       254 ~vI~T~P~--d~~---~~~~-------~-g~L~yrsl~~~~~~~~~~~~~--~~~~vn~~d~~------p~tRi~e~k~~  312 (397)
T 3hdq_A          254 HMIYTGPV--DAF---FDFC-------Y-GKLPYRSLEFRHETHDTEQLL--PTGTVNYPNDY------AYTRVSEFKHI  312 (397)
T ss_dssp             EEEECSCH--HHH---TTTT-------T-CCCCEEEEEEEEEEESSSCSC--SSSEEECSSSS------SCSEEEEHHHH
T ss_pred             EEEEcCCH--HHH---HHHh-------c-CCCCCceEEEEEEEeccccCC--CCeEEEeCCCC------cceEEEeeccc
Confidence            99864221  111   0100       0 001122222222335544222  35678887432      22367777664


Q ss_pred             CCcCCCCcEEEEEEEeecc--------ccchHHHHHHHHHH
Q 009881          409 LAVCPLGMFVLYFSALCDE--------VNQGKKLLHAALSA  441 (523)
Q Consensus       409 ~~~cP~G~~vi~~st~~~~--------~~~~~~~l~~~~~~  441 (523)
                      ++. +.++.+|..-..+..        ..+..+.++++.+.
T Consensus       313 ~~~-~~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~~y~~~  352 (397)
T 3hdq_A          313 TGQ-RHHQTSVVYEYPRAEGDPYYPVPRPENAELYKKYEAL  352 (397)
T ss_dssp             HCC-CCSSEEEEEEEEESSSSCCEECCSHHHHHHHHHHHHH
T ss_pred             CCC-CCCCEEEEEEECCCCCccccccCchhHHHHHHHHHHH
Confidence            433 456777755544421        23455666666655

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.59  E-value=5.9e-16  Score=161.21  Aligned_cols=301  Identities=12%  Similarity=0.095  Sum_probs=158.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (523)
                      .++||||||||++||+||..|+++ |++|+|+|+++++||++++...+.                               
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   54 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ-------------------------------   54 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT-------------------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC-------------------------------
Confidence            468999999999999999999999 999999999999999999975410                               


Q ss_pred             ccccCCCceEEecCCCeEEec-ChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHh--cccCChHhHH
Q 009881          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK--DKSLGLMEKN  176 (523)
Q Consensus       100 ~~~~~~r~f~ldl~GP~ll~~-~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~--~~~ls~~~k~  176 (523)
                            .++.+|-.|++++.. ...+.+++.+.++..  .+.  ...+++ .+|+.+++|.+...+-.  ...+.+.   
T Consensus        55 ------~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~~--~~~--~~~~~~-~~G~~~~~p~~~~~~~~l~~~~~~~~---  120 (399)
T 1v0j_A           55 ------TGIEVHKYGAHLFHTSNKRVWDYVRQFTDFT--DYR--HRVFAM-HNGQAYQFPMGLGLVSQFFGKYFTPE---  120 (399)
T ss_dssp             ------TCCEEETTSCCCEEESCHHHHHHHTTTCCBC--CCC--CCEEEE-ETTEEEEESSSHHHHHHHHTSCCCHH---
T ss_pred             ------CCEEEEeCCCcEEcCCcHHHHHHHHHhhhhh--ccc--cceEEE-ECCEEEeCCCCHHHHHHHhcccCCHH---
Confidence                  123343125766644 346777887777521  221  122333 38899999876432211  1111222   


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhH-HHHHH-HHHhccCCCcchhhhhcchHHHHHHH
Q 009881          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKI-KSIVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (523)
Q Consensus       177 ~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l-~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~  254 (523)
                      .+.+++......             .....+.++.+|+.+. +.+.+ +.++. +.....  ..++  .++++... .++
T Consensus       121 ~~~~~l~~~~~~-------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~--~~~~--~~ls~~~~-~~~  181 (399)
T 1v0j_A          121 QARQLIAEQAAE-------------IDTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQW--QTDP--KELPAANI-TRL  181 (399)
T ss_dssp             HHHHHHHHHGGG-------------SCTTC----CCHHHHH-HCHHHHHHHTHHHHHHHH--TSCG--GGSCGGGC-SCC
T ss_pred             HHHHHHHHHhhc-------------cCCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhc--CCCh--hhcChHhh-hcc
Confidence            222222221110             0112356788888863 33333 33332 221221  2222  22444332 000


Q ss_pred             HHHHHhhhcccCCCccEE-eecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEE-EcCEEEE
Q 009881          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKLVL  332 (523)
Q Consensus       255 ~~~l~s~g~~g~~~~~~~-~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i-~A~~VI~  332 (523)
                      .........+..  ..+. +|+||+++|+++|++   ..|++|+||++|++|..     .   |     +++ .||+||+
T Consensus       182 ~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~-----~---v-----~~~~~aD~VI~  243 (399)
T 1v0j_A          182 PVRYTFDNRYFS--DTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG-----Q---L-----RPGSPAAPVVY  243 (399)
T ss_dssp             CCCSSSCCCSCC--CSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH-----H---H-----TTTSTTCCEEE
T ss_pred             eeEeccccchhh--hhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh-----h---h-----hhcccCCEEEE
Confidence            000000001111  1243 899999999998765   57899999999999842     1   2     135 6999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEcCCCCCCCCCCceEEEEEeCCC-CC
Q 009881          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-LA  410 (523)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~s~~-~~  410 (523)
                      + |...+.++.             +. ...+..+....+..+.+..+  ....+.+|.....   ..  .+..+..- ..
T Consensus       244 t~p~~~l~~~~-------------l~-~l~y~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~--ri~~~~~~~~~  302 (399)
T 1v0j_A          244 TGPLDRYFDYA-------------EG-RLGWRTLDFEVEVLPIGDFQ--GTAVMNYNDLDVP---YT--RIHEFRHFHPE  302 (399)
T ss_dssp             CSCHHHHTTTT-------------TC-CCCEEEEEEEEEEESSSCSS--SSSEEEECCTTSS---CS--EEEEGGGGCTT
T ss_pred             CCcHHHHHhhh-------------hC-CCCcceEEEEEEEEccccCC--CCeEEEeCCCCCC---cc--eeEeecCCCCC
Confidence            5 221111110             10 11122233333445665322  2346677743221   12  34555444 35


Q ss_pred             cC-CCCcEEEEEEEe
Q 009881          411 VC-PLGMFVLYFSAL  424 (523)
Q Consensus       411 ~c-P~G~~vi~~st~  424 (523)
                      .. |+++.+|++...
T Consensus       303 ~~~~~~~~~v~~e~~  317 (399)
T 1v0j_A          303 RDYPTDKTVIMREYS  317 (399)
T ss_dssp             SCCCSSCEEEEEEEE
T ss_pred             CcCCCCCeEEEEeec
Confidence            54 667788777643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.59  E-value=5.4e-14  Score=144.55  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCcccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSI   66 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG~~~s~~~   66 (523)
                      +..+||+|||||++||+||+.|+++|++|+|+|++ +++||++.++..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~   89 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHA   89 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecc
Confidence            35689999999999999999999999999999999 999999998764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.57  E-value=3.4e-15  Score=153.76  Aligned_cols=226  Identities=13%  Similarity=0.178  Sum_probs=128.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      ++||+|||+|++||++|.+|+++|++|+|+|+++++||++.++..+                                  
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~----------------------------------   46 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE----------------------------------   46 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET----------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccC----------------------------------
Confidence            3799999999999999999999999999999999999999986532                                  


Q ss_pred             ccCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHH
Q 009881          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~  180 (523)
                           ++.+|..||+++.... .+.+++.+.+..  ..+..  ....+ .+|+.+.+|.+...+..-  +.......+.+
T Consensus        47 -----g~~~~~~G~~~~~~~~~~~~~~~~~l~~~--~~~~~--~~~~~-~~g~~~~~p~~~~~~~~l--~~~~~~~~~~~  114 (367)
T 1i8t_A           47 -----GIQIHKYGAHIFHTNDKYIWDYVNDLVEF--NRFTN--SPLAI-YKDKLFNLPFNMNTFHQM--WGVKDPQEAQN  114 (367)
T ss_dssp             -----TEEEETTSCCCEEESCHHHHHHHHTTSCB--CCCCC--CCEEE-ETTEEEESSBSHHHHHHH--HCCCCHHHHHH
T ss_pred             -----CceeeccCCceecCCCHHHHHHHHHhhhh--hhccc--cceEE-ECCeEEEcCCCHHHHHHH--hccCCHHHHHH
Confidence                 2334312577665443 556666555431  12221  11222 378888888875432211  01111223344


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~-~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      |+......             .....+.++.+|+.+. +.+.+.+ ++. +.....  ..++  .++++... .++....
T Consensus       115 ~l~~~~~~-------------~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~--~~~~--~~lsa~~~-~~l~~~~  175 (367)
T 1i8t_A          115 IINAQKKK-------------YGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQW--GRSA--KELPAFII-KRIPVRF  175 (367)
T ss_dssp             HHHHHTTT-------------TCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHH--SSCG--GGSCTTSS-CCCCBCS
T ss_pred             HHHHHhhc-------------cCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhh--CCCh--HHcCHHHH-hhceeee
Confidence            44432211             0112457899999865 3334333 322 221221  2222  22444321 0000000


Q ss_pred             HhhhcccCCCccEE-eecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          259 SSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       259 ~s~g~~g~~~~~~~-~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..-..+.  .+.+. +|+||+++|+++|++     |++|+||++|++|.    . +   |      ++.+|+||++
T Consensus       176 ~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~----~-~---v------~~~~D~VV~a  230 (367)
T 1i8t_A          176 TFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDK----D-S---L------ASKAHRIIYT  230 (367)
T ss_dssp             SSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSH----H-H---H------HTTEEEEEEC
T ss_pred             ccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeec----h-h---h------hccCCEEEEe
Confidence            0000111  12343 999999999998865     68999999999873    1 1   2      2458999965

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.52  E-value=1.2e-14  Score=150.58  Aligned_cols=214  Identities=13%  Similarity=0.157  Sum_probs=123.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (523)
                      .++||+|||+|++|+++|..|+++|++|+|+|+++++||++.+...+.                                
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~--------------------------------   49 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE--------------------------------   49 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT--------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC--------------------------------
Confidence            458999999999999999999999999999999999999999865421                                


Q ss_pred             cccCCCceEE-ecCCCeEEecC-hHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhc--ccCChHhHH
Q 009881          101 LSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD--KSLGLMEKN  176 (523)
Q Consensus       101 ~~~~~r~f~l-dl~GP~ll~~~-~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~--~~ls~~~k~  176 (523)
                           .++.+ |. |++++... ..+.+++.+.+...  .+.  ...+++ .+|+.+.+|.+...+-..  ..+++.   
T Consensus        50 -----~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~~--~~~--~~~~~~-~~g~~~~~P~~~~~~~~l~~~~~~~~---  115 (384)
T 2bi7_A           50 -----TNVMVHVY-GPHIFHTDNETVWNYVNKHAEMM--PYV--NRVKAT-VNGQVFSLPINLHTINQFFSKTCSPD---  115 (384)
T ss_dssp             -----TCCEEETT-SCCCEEESCHHHHHHHHTTSCEE--ECC--CCEEEE-ETTEEEEESCCHHHHHHHTTCCCCHH---
T ss_pred             -----CCceEeeC-CceEECCCCHHHHHHHHHHhhhc--ccc--cceEEE-ECCEEEECCCChhHHHHHhcccCCHH---
Confidence                 12333 33 57766543 46777777666421  121  122233 378888899875332211  111222   


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhccCCCcchhhhhcchHHHHHHH
Q 009881          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (523)
Q Consensus       177 ~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~-~l~-~~i~l~~~~~~~~~~~~s~~~~l~~~  254 (523)
                      .+.+++......             . ...+.++.+|+.+. +.+.+.+ ++. +....  +..++  .++++... .++
T Consensus       116 ~~~~~l~~~~~~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~ls~~~~-~r~  175 (384)
T 2bi7_A          116 EARALIAEKGDS-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQ--WGMQP--SELPASIL-KRL  175 (384)
T ss_dssp             HHHHHHHHHSCC-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHH--HSSCG--GGSBGGGC-CSC
T ss_pred             HHHHHHHHhhhc-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHH--hCCCH--HHhCHHHH-hcc
Confidence            223333321110             0 13467999999865 3444443 322 22222  22222  22444321 000


Q ss_pred             HHHHHhhhcccCCCccEE-eecCCcChHHHHHHHHHHHcCcEEEcCCcee-EE
Q 009881          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SL  305 (523)
Q Consensus       255 ~~~l~s~g~~g~~~~~~~-~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~-~I  305 (523)
                      .........+..  +.+. +|+||+++|+++|.+   ..|++|+++++|+ +|
T Consensus       176 ~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i  223 (384)
T 2bi7_A          176 PVRFNYDDNYFN--HKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEE  223 (384)
T ss_dssp             CCCSSSCCCSCC--CSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGG
T ss_pred             cccccccccccc--ccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhh
Confidence            000000001111  2343 999999999998764   4789999999999 77

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.49  E-value=6.5e-13  Score=148.69  Aligned_cols=99  Identities=13%  Similarity=0.050  Sum_probs=68.8

Q ss_pred             EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009881          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (523)
Q Consensus       271 ~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l  349 (523)
                      .....+|++.|.+++.+     |..|+++++|++|..+  +++ +.|++.+|++++||+||+. |...+....+.+.+++
T Consensus       526 ~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L  597 (776)
T 4gut_A          526 HTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL  597 (776)
T ss_dssp             EEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred             eEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            55678899999887753     6789999999999875  444 4688889999999999975 4322222112356666


Q ss_pred             hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009881          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (523)
Q Consensus       350 ~~~~~~l~~~~~~~~v~r~i~i~~~~l~  377 (523)
                      |..+....+...++.+.+.++.+++++-
T Consensus       598 p~~~~~ai~~l~~g~~~KV~l~f~~~FW  625 (776)
T 4gut_A          598 SEKKMKAINSLGAGIIEKIALQFPYRFW  625 (776)
T ss_dssp             CHHHHHHHHHEEEECCEEEEEECSSCTT
T ss_pred             CHHHHHHHHhCCCeeEEEEEEecCcccc
Confidence            6654443333335667888888999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.41  E-value=4.1e-12  Score=140.59  Aligned_cols=102  Identities=11%  Similarity=-0.029  Sum_probs=70.9

Q ss_pred             cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCC-
Q 009881          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGS-  341 (523)
Q Consensus       270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~------G~~i~A~~VI~~-p~~~~~~l-  341 (523)
                      .+..+++|++.|+++|++     |..|+||++|++|..+  ++. +.|++.+      |++++||+||+. |...+..+ 
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~  463 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  463 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhccc
Confidence            356789999999998865     4589999999999887  333 4566554      568999999975 43332221 


Q ss_pred             -CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009881          342 -LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (523)
Q Consensus       342 -~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~  379 (523)
                       .+.+.|+||..+....+...++.+.+.++.+++++-+.
T Consensus       464 ~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~  502 (662)
T 2z3y_A          464 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  502 (662)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             CceEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccC
Confidence             02356777765544333334777899999999987543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.41  E-value=6.2e-12  Score=141.78  Aligned_cols=102  Identities=11%  Similarity=-0.029  Sum_probs=70.2

Q ss_pred             cEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCC-
Q 009881          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGS-  341 (523)
Q Consensus       270 ~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~------G~~i~A~~VI~~-p~~~~~~l-  341 (523)
                      .++.+++|++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||+. |...+..+ 
T Consensus       563 ~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~  634 (852)
T 2xag_A          563 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  634 (852)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhhh
Confidence            367889999999998865     3479999999999887  443 4566544      568999999975 43332221 


Q ss_pred             -CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009881          342 -LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (523)
Q Consensus       342 -~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~  379 (523)
                       .+.+.|+||..+....+...++.+.+.++.+++++-+.
T Consensus       635 ~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~  673 (852)
T 2xag_A          635 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  673 (852)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             cccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCC
Confidence             02356677765544323334677889888899987543

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.36  E-value=1.8e-12  Score=142.62  Aligned_cols=61  Identities=10%  Similarity=-0.017  Sum_probs=47.3

Q ss_pred             EEeecCCcChHHHHHHHHHHHcCcEEEcCCcee--EEEEecCCC-----cEEEE-EeCCCc--EEEcCEEEEC
Q 009881          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~--~I~~~~~~g-----~~~gV-~l~~G~--~i~A~~VI~~  333 (523)
                      +.++.||+..|+++|.+.+. .|+.|+|+++|+  +|..+. ++     ..+.| ...+|+  ++.||+||+.
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~-~g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvT  409 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQ-NVGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILA  409 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHH-HHTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEEC
T ss_pred             eeEECCcHHHHHHHHHHhcc-cCCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEEC
Confidence            56799999999999987653 278899999999  998763 33     13556 446777  7899999974

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.35  E-value=2.5e-11  Score=123.15  Aligned_cols=99  Identities=10%  Similarity=-0.001  Sum_probs=68.0

Q ss_pred             EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009881          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ  350 (523)
Q Consensus       272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~  350 (523)
                      +.+.+|+..+.+++++.   .|++|+++++|++|..+  +++ +.|++.+|++++||+||+. |......++...++.+|
T Consensus       105 ~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~  178 (342)
T 3qj4_A          105 FVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLIS  178 (342)
T ss_dssp             EECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSC
T ss_pred             eecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccC
Confidence            45688999999988764   39999999999999876  444 5688888988999999964 43333344323334454


Q ss_pred             hhhhhcccCCCcceEEEEEEEecCCC
Q 009881          351 ESFQAFSLSDNKGKVARGICITRSSL  376 (523)
Q Consensus       351 ~~~~~l~~~~~~~~v~r~i~i~~~~l  376 (523)
                      +......+...+..+....+.+++++
T Consensus       179 ~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          179 ECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             HHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             HHHHHHHhcCCccccEEEEEEECCCC
Confidence            43333223344677888888888763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.13  E-value=3.9e-10  Score=114.65  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~A~~VI~~  333 (523)
                      ...|..|.   ..+.++|.+.++..|++++++++|++|..+  ++..+.|++.+|  ++++||+||+.
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          139 LVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             eECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEEC
Confidence            34555552   588999999999999999999999999876  344356888888  47999999853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.09  E-value=1.1e-09  Score=114.69  Aligned_cols=61  Identities=21%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             EEeecC-C---cChHHHHHHHHHHHcCcEEEcCC---ceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~g-G---~~eL~qal~r~~a~~Gg~~~L~~---~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.|.. |   ...+.++|.+.++..|++|++++   +|++|..+  ++++++|++.+|++++||+||+.
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~A  216 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFLC  216 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEEC
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEEC
Confidence            445665 5   25889999999999999999999   99999887  67888899999989999999953

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.02  E-value=2.4e-09  Score=118.71  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..+|.+|.   ..+.+++.+.++..|++++++++|++|..+  +++ ++|++.+|++++||.||+.
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVlA  468 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVLA  468 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEEC
Confidence            45666664   588999999999999999999999999887  555 5888888889999999953

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.01  E-value=4.8e-09  Score=107.22  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=48.4

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +++|.+|.   ..+.++|.+.++..|++++++++|++|..+  +++ ++|++.+| +++||+||+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~A  204 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVNA  204 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEEC
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEEC
Confidence            45566663   588999999999999999999999999886  454 68887666 8999999964

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.00  E-value=2.1e-10  Score=109.70  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~   66 (523)
                      +||+|||||++||+||+.|+++|++|+|+||++.+||++.+...
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~   46 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRS   46 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccccccc
Confidence            79999999999999999999999999999999999999887543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.96  E-value=1.3e-08  Score=108.99  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .++||||||+|++||+||+.|+++|.+|+||||++..||...
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.95  E-value=6e-09  Score=115.79  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~A~~VI~~  333 (523)
                      ..+|.+|.   ..+.+++.+.++..|++++++++|++|..+  +++ +.|++.+|+ +++||+||+.
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVlA  464 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVILA  464 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEEC
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEEC
Confidence            45666664   588999999999999999999999999886  444 578888887 8999999953

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.91  E-value=3.8e-08  Score=101.51  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             EEeecCCcC---hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~~---eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++|..|.-   .+.+++.+.++..|++++.+++|++|..+  ++++++|++.+| +++||.||..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  225 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVALA  225 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEEC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEEC
Confidence            456766653   78899999999999999999999999876  667788888777 7999999853

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.90  E-value=3.7e-08  Score=106.90  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             EeecCC---cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 009881          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG---~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~A~~VI~  332 (523)
                      .+|..|   ..++.++|.+.++..|.+++++++|++|..+  + +++++|++.  +|+  +|+||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            345554   3478899999999999999999999999876  5 888888765  676  689999885

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.88  E-value=7.9e-08  Score=104.40  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             EeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009881          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~A~~VI~  332 (523)
                      .++..|.   .++.+.|.+.++..|.+++++++|++|..++ +|++++|++.  +|+  +|+||.||+
T Consensus       245 ~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          245 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             EESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            3455432   4788999999999999999999999998762 3788888765  676  689999885

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.88  E-value=3.1e-08  Score=101.46  Aligned_cols=60  Identities=25%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.|..|.   ..+.+++.+.++..|++++.+++|++|..+  ++++++|++.+| +++||+||..
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~A  200 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVNA  200 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEEC
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEEC
Confidence            44555553   478899999999999999999999999876  667777888777 7999999953

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.87  E-value=1.5e-08  Score=106.62  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=51.1

Q ss_pred             EEeecCC-cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG-~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .++|..+ ...+.++|.+.++..|.+++++++|++|..+  ++++++|++.+|++++||.||+
T Consensus       125 ~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          125 RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            3577554 4688999999999999999999999999876  6777899988888899999985

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.87  E-value=1.3e-08  Score=106.11  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             EEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+|.....++.+++.+.++..|.+++++++|++|..+  ++. +.|++.+| +++||.||+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            35676566799999999999999999999999999876  443 67887777 899999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.72  E-value=3.7e-08  Score=106.02  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..+.++|.+.++..|++++++++|++|..+  ++++++|++.+|+++.||.||+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            467778888888899999999999999876  67788899999999999999964

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.72  E-value=2.1e-07  Score=105.58  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +++|..|.   ..+.++|.+.+...|++++.+++|++|..+  ++++++|++.+| +++||+||..
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~A  202 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  202 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEEC
Confidence            45566664   378999999999999999999999999876  677778887766 7999999953

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.69  E-value=8.6e-09  Score=105.50  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      |++|||||||||++||++|+.|+++|++|+|+||++.+|...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            567999999999999999999999999999999998887643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.61  E-value=9.5e-07  Score=95.87  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~A~~VI~  332 (523)
                      .++.+.|.+.++..|.+++++++|++|..+  + |++++|++.  +|+  +|+||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            478899999999999999999999999876  5 788888765  675  689999985

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.52  E-value=5.3e-08  Score=97.97  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++||+|||+|.+||+||++|++  .|++|+|+|+++++||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5799999999999999999974  69999999999999998754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.46  E-value=9.1e-08  Score=95.07  Aligned_cols=41  Identities=22%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .|.+|||||||+|.+|++||.+|+|+|++|+++|++. +||.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            4778999999999999999999999999999999975 5554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.44  E-value=1.2e-07  Score=94.37  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|++||..|+|.|++|+++|++ .+||.+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~   46 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMAN   46 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeec
Confidence            4699999999999999999999999999999985 67886643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.43  E-value=1.2e-07  Score=95.07  Aligned_cols=56  Identities=9%  Similarity=0.073  Sum_probs=40.2

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc----CCCCCCCcccc
Q 009881            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSSL   64 (523)
Q Consensus         9 ~~~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~----n~~~GG~~~s~   64 (523)
                      .++.++.++..+..+||||||+|++|+++|..|++.|++|+++|+    +..+||.+...
T Consensus         9 ~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A            9 HHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             ------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             ccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            344444455556679999999999999999999999999999999    45899987753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.36  E-value=1.6e-07  Score=99.77  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~A  283 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVMLA  283 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEEe
Confidence            467888888889999999999999999765  444 4788889999999999964

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.34  E-value=3e-07  Score=93.95  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      +.+|..|.   .++.+++.+.++..|++++++++|++|..+  ++++ +|++.+| +++||.||+.
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~A  214 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVVA  214 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEEC
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEEC
Confidence            55666664   478899999999999999999999999765  4554 7877666 8999999853

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.33  E-value=2.8e-07  Score=92.83  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |.++||+|||+|++|+++|..|++.|++|+++|+++.+||.|..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            34689999999999999999999999999999999999998764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.31  E-value=3.4e-07  Score=94.75  Aligned_cols=46  Identities=17%  Similarity=0.052  Sum_probs=34.8

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      +.++-.++.+||||||||++||++|+.|++.|++|+|+|+++.++.
T Consensus        15 ~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A           15 GENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             CCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            3444455679999999999999999999999999999999987653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.30  E-value=1.8e-05  Score=82.02  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~  336 (523)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++++|+++.||.||+..-.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEECSCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            3578888889999999999999999999765  67778899999999999999975433

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.28  E-value=4.5e-07  Score=90.42  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||+|||+|++|+++|..|++.|++|+++|+ ..+||.+..
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            468999999999999999999999999999999 568887654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.28  E-value=3e-07  Score=97.85  Aligned_cols=50  Identities=30%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      .|+..+ .++||||||+|.+|++||..|++.|++|+++|+++.+||.|...
T Consensus        18 ~~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~   67 (491)
T 3urh_A           18 LYFQSM-MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV   67 (491)
T ss_dssp             ---------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             cchhhc-ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc
Confidence            344444 45999999999999999999999999999999999999976543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.28  E-value=5e-07  Score=93.03  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.|.+|.   ..+.++|.+.++..|++++++++|++|..+  ++. +.|++.+| +++||+||+.
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~A  203 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVLA  203 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEEC
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEEc
Confidence            44555553   468889999888999999999999999876  444 45766554 7999998853

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.27  E-value=3e-07  Score=95.39  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=45.7

Q ss_pred             EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecC--CCcEEEEEeCCCcEEEcCEEEE
Q 009881          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      +||.....++.+++.+.++..|.+++++++|++|..+++  +++ +.|++.+| +++||+||+
T Consensus       102 ~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            567554568889999999999999999999999976410  233 57777666 799999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.26  E-value=4.7e-07  Score=89.86  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|||||||+|.+|++||..|+|.|++|+++|++..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            359999999999999999999999999999999764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.26  E-value=4.1e-07  Score=91.26  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +..+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            45689999999999999999999999999999999999998753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.25  E-value=5.3e-07  Score=97.64  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             EEeecCCc--ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC---C--cEEEcCEEEE
Q 009881          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~--~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~---G--~~i~A~~VI~  332 (523)
                      +.|+.+-.  ..+.+++.+.++..|++++.+++|++|..+  ++++++|++.+   |  .+++||.||.
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~  226 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVN  226 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEE
Confidence            55664432  578999999999999999999999999887  77778888753   4  4689999885

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.24  E-value=3.9e-07  Score=96.35  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            3699999999999999999999999999999999999998764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.24  E-value=7e-07  Score=87.98  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|++|+.+|..|++. |.+|+|+|+++.+||..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            468999999999999999999997 99999999999998743

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.24  E-value=3.7e-05  Score=79.42  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++.+|+++.||.||+..-
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a~G  238 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVGVG  238 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEECCC
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECcC
Confidence            4578888889999999999999999999876  6777889999999999999997543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.24  E-value=4.9e-07  Score=91.84  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++..+||||||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            445799999999999999999999999999999999999998753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.23  E-value=7.2e-07  Score=90.79  Aligned_cols=59  Identities=19%  Similarity=0.270  Sum_probs=45.9

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.|..|.   ..+.+++.+.+...|++++.+++|++|..+  +++ +.|++.+| +++||+||+.
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~a  199 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIVC  199 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEEC
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEEc
Confidence            44555553   478899999999999999999999999875  444 56777666 4999999853

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.22  E-value=6e-07  Score=96.93  Aligned_cols=48  Identities=17%  Similarity=0.256  Sum_probs=41.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      ..+.++||||||||++|+.+|..|++.|++|+++|+++.+||.|....
T Consensus        17 ~~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~   64 (549)
T 4ap3_A           17 TGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR   64 (549)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            344579999999999999999999999999999999999999876433

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.21  E-value=1.1e-06  Score=89.49  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..++||||||+|++|+++|+.|+++|++|+|+|++...+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            3578999999999999999999999999999999874443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.21  E-value=9e-07  Score=91.77  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s   63 (523)
                      +..+||||||||++||++|..|++.|.+ |+|+|+++.+++....
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g   46 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVG   46 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeE
Confidence            4568999999999999999999999999 9999999887654333

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.20  E-value=1.5e-06  Score=87.04  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      ++||+|||+|++|+++|..|++.  |++|+++|+++..||..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            46999999999999999999999  99999999999998744

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.19  E-value=6.6e-07  Score=89.24  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||||||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~   48 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA   48 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh
Confidence            3589999999999999999999999999999999999998853

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.19  E-value=1.2e-06  Score=91.91  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||+|||||++||++|.+|++.|.  +|+++|+++.+||.|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            46899999999999999999999999  99999999999998754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.19  E-value=1e-06  Score=91.27  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~A~~VI~  332 (523)
                      ..+.+.|.+.++..|++++.+++|++|..++ ++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcCEEEE
Confidence            3556677777778899999999999998762 4444567778888  699999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.19  E-value=1.3e-06  Score=97.01  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ....+||||||+|.+|+.||..|++.|++|+++|+++++||.+..
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            345689999999999999999999999999999999999998664

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.18  E-value=1.1e-06  Score=87.28  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+||||||+|++|+++|..|++.|++|+++|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  8998775

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.18  E-value=1e-06  Score=88.79  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      ++||||||+|++||++|+.|++.  |++|+++|+++.+||.+
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            58999999999999999999997  99999999999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.18  E-value=1.1e-06  Score=94.84  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+.++||||||||++|+.+|..|++.|++|+++|+++.+||.|..
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            445799999999999999999999999999999999999998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.18  E-value=1.3e-06  Score=89.46  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..+.+++.+.++..|++++.+++|++|..+  ++. +.|++.+| +++||.||+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A  200 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEEe
Confidence            588899999999999999999999999875  344 46776555 7999999953

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.17  E-value=7.5e-07  Score=94.04  Aligned_cols=52  Identities=13%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEE-eCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~-l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|+ +.+|+ +.||.||+.
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~a  263 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVMLA  263 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEEe
Confidence            477888889999999999999999999765  33335788 88888 999999964

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.17  E-value=1.4e-06  Score=89.88  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +..+||||||||++||++|..|++.|.+|+|+|+++.++++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            45689999999999999999999999999999999877653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.16  E-value=1.4e-06  Score=89.35  Aligned_cols=42  Identities=14%  Similarity=0.023  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +..+||||||||++|+++|..|++.|++|+|+|+++.+++..
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~   50 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFG   50 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCC
Confidence            346899999999999999999999999999999999887543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.16  E-value=1.6e-06  Score=94.36  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CC--cEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G--~~i~A~~VI~  332 (523)
                      ..+.+.|.+.++..|++++.++.|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467777888888899999999999999875  4556788876 67  5799999984

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.16  E-value=1.3e-06  Score=93.10  Aligned_cols=51  Identities=20%  Similarity=0.100  Sum_probs=42.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..+.+++.+.++..|++++.+++|++|..+  + ++++|++   .+|+  +++||.||.
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~  204 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVN  204 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEE
Confidence            478899999999999999999999999876  4 5678876   3676  799999985

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.16  E-value=1.2e-06  Score=92.78  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .+|||||||+|.+|++||..|++.|++|+++|+++..||.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998666554

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.15  E-value=1.2e-06  Score=90.66  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~   60 (523)
                      .++||||||+|++|+++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            459999999999999999999999  9999999998765554

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.14  E-value=1.8e-06  Score=91.07  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...+.+||+|||+|.+|+++|..|++.|++|+++|+++++||.+.
T Consensus       118 ~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          118 SRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            334678999999999999999999999999999999999999754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.13  E-value=2e-06  Score=88.72  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      +..+||+|||||++||++|..|++.|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            45689999999999999999999999999999999874

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.12  E-value=1.3e-06  Score=86.39  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEE-eccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~Vlv-lE~n~~~GG~~~s   63 (523)
                      ..+||+|||+|.+|+++|..|++.|++|++ +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 788998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.12  E-value=1.9e-06  Score=92.48  Aligned_cols=45  Identities=33%  Similarity=0.468  Sum_probs=41.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+.++||||||+|.+|+++|..|++.|++|+++|+++++||.|..
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   84 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   84 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccc
Confidence            345799999999999999999999999999999999989998753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.12  E-value=1.5e-06  Score=86.81  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            4689999999999999999999999999999999 78987754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.12  E-value=1.7e-06  Score=82.57  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .++||||||+|++|+.+|..|++.|.+|+++|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46899999999999999999999999999999984

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.12  E-value=1.3e-06  Score=91.49  Aligned_cols=62  Identities=18%  Similarity=0.289  Sum_probs=47.8

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEec-------------CCCcEEEEEeCCCcEE--EcCEEEE
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQ-------------NSGSYKGVRLASGQDI--LSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~-------------~~g~~~gV~l~~G~~i--~A~~VI~  332 (523)
                      ++++..|.   .++.++|.+.++..|++++.+++|++|..+.             +++++++|++.+| ++  +||.||+
T Consensus       170 ~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~  248 (448)
T 3axb_A          170 VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVV  248 (448)
T ss_dssp             EEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEE
Confidence            44455443   3889999999999999999999999998720             1556678888777 68  9999985


Q ss_pred             C
Q 009881          333 D  333 (523)
Q Consensus       333 ~  333 (523)
                      .
T Consensus       249 A  249 (448)
T 3axb_A          249 A  249 (448)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.12  E-value=1.1e-06  Score=89.14  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~   64 (523)
                      |.++||+|||+|++|+++|..|++.|+ +|+++|+++ +||.+..+
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~   46 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHW   46 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccC
Confidence            346899999999999999999999999 999999999 99876543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.11  E-value=9.9e-07  Score=93.48  Aligned_cols=44  Identities=18%  Similarity=0.278  Sum_probs=39.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+.++||||||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            345799999999999999999999999999999976 78988754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=1.8e-06  Score=91.12  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..++||||||+|.+|+++|..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            34699999999999999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.08  E-value=1.9e-06  Score=91.59  Aligned_cols=45  Identities=29%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc--------CCCCCCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~--------n~~~GG~~~s~   64 (523)
                      ..+|||||||+|.+|++||..|++.|++|+++|+        +..+||.|...
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   56 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV   56 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc
Confidence            3569999999999999999999999999999998        66899977543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.08  E-value=2.1e-06  Score=92.05  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~--------~~GG~~~s~   64 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|+++        .+||.|...
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            46999999999999999999999999999999975        789977543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.08  E-value=2.1e-06  Score=92.58  Aligned_cols=46  Identities=22%  Similarity=0.298  Sum_probs=41.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      +.++||||||||++|+.+|..|++.|++|+++|+++.+||.|....
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~   52 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNR   52 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            4568999999999999999999999999999999999999876433

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.07  E-value=2e-06  Score=86.37  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            445799999999999999999999999999999975 78887643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.07  E-value=1.6e-06  Score=91.54  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            489999999999999999999999999999999999998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.07  E-value=1.1e-06  Score=93.05  Aligned_cols=43  Identities=19%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+++|..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            4689999999999999999999999999999999999997654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.07  E-value=1.5e-06  Score=91.93  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +.++||||||+|.+|+++|..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            34699999999999999999999999999999999999998754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.06  E-value=2.7e-06  Score=93.13  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||||||+|++|+++|..|++.|++|+++|+.+..||.+.
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            469999999999999999999999999999999999998553

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.06  E-value=1.9e-06  Score=93.84  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      .++.++|.+.+...|.++++++.|++|..++ ++++++|..   .+|+  +++|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            5888999999988999999999999998752 577888875   4676  589999885

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.06  E-value=1.8e-06  Score=90.94  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +|||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   42 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR   42 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccce
Confidence            489999999999999999999999999999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.05  E-value=1.5e-06  Score=92.42  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +|||||||+|.+|++||..|++.|++|+++|++. +||.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            5999999999999999999999999999999974 999764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.05  E-value=2.7e-06  Score=90.99  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~A~~VI~  332 (523)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++++.+|++  .+|+  +++||.||.
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence            367777888888899999999999999887  677666655  4574  799999984

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.05  E-value=2e-06  Score=92.64  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCeEEEeccCCCCCCCccccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La-~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      +.++||||||||++|+.+|..|+ +.|++|+++|+++.+||.|....
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~   52 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR   52 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccC
Confidence            34689999999999999999999 99999999999999999876443

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.04  E-value=2.7e-06  Score=87.66  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEE-EEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~-gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.+... |.+++++++|++|..+  +++++ .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            46667777777777 8999999999999876  44433 67888999999999985

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.04  E-value=3.9e-06  Score=90.14  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..++||||||||++||++|+.|++.|.+|+|+||++..+.
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~   42 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSP   42 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            3569999999999999999999999999999999987653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.04  E-value=1.5e-06  Score=92.12  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+++|..|++.|++|+++|+++.+||.+..
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            4699999999999999999999999999999999999987643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.03  E-value=3.1e-06  Score=91.32  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=38.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||||++||++|+.|++.|.+|+|+||++..++..+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~   67 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRV   67 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCce
Confidence            4689999999999999999999999999999999987654433

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.03  E-value=2.6e-06  Score=91.69  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +.++||||||+|++||+||+.|++ |.+|+||||++..||..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            456899999999999999999999 99999999999877653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.03  E-value=2.7e-06  Score=92.49  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~------G~~VlvlE~n~~~GG~~   61 (523)
                      ++||||||||++||++|+.|++.      |.+|+||||++.+|+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~   80 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   80 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence            48999999999999999999999      99999999999988763

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.03  E-value=1.7e-06  Score=90.91  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~  332 (523)
                      .+.+.|.+.++..|.++++++.|+++..+  ++++++|++.   +|+  +++||.||.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVVE  156 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEEE
Confidence            56677777777889999999999999876  6677667664   676  799999994

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.03  E-value=3.5e-06  Score=91.39  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=46.9

Q ss_pred             EEeecCCc--ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009881          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (523)
Q Consensus       271 ~~~p~gG~--~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~A~~VI~  332 (523)
                      +.|+.+..  ..+..++.+.++..|++++.+++|++|..+  ++++++|++.   +|+  +|+||.||.
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~  244 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVIN  244 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEE
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEE
Confidence            45665333  468888889999999999999999999887  6677788753   344  699999985

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.03  E-value=3.8e-06  Score=89.48  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ...+||+|||||++|+++|..|++.|++|+|+|+++.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            45689999999999999999999999999999999988754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.02  E-value=2.3e-06  Score=94.14  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..|.++|.+.+...|.+++.++.|.+|..+  +|+++||..   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            378899999988899999999999999886  788888765   4676  489999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.02  E-value=2.1e-06  Score=85.87  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc----CCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~----n~~~GG~~~s   63 (523)
                      +..+||+|||+|++|+++|..|++.|++|+++|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4568999999999999999999999999999999    6778887654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.02  E-value=4.1e-06  Score=89.36  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      +.++||||||+|++||++|+.|++.|.+|+|+||++..+.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            4578999999999999999999999999999999987754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.02  E-value=3.2e-06  Score=89.64  Aligned_cols=53  Identities=8%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-----~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|++|..++ ++. +.|++.+|+     ++.+|.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~-~~v~~~~~~~~~~~~~~~D~vi~a  284 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQD-DGK-LLVKYKNVETGEESEDVYDTVLWA  284 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECT-TSC-EEEEEEETTTCCEEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCc-EEEEEecCCCCceeEEEcCEEEEC
Confidence            4678888888899999999999999997652 333 356665554     7899999964

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.01  E-value=4.2e-06  Score=90.67  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      .++||||||+|++||++|+.|+++|.+|+|||+++..+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            46899999999999999999999999999999998765

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.01  E-value=2.1e-06  Score=90.57  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            4689999999999999999999999999999998 78887643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.01  E-value=4e-06  Score=83.00  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s   63 (523)
                      +||+|||+|++|+++|..|++.|+ +|+++|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 68887654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.00  E-value=4.5e-06  Score=91.82  Aligned_cols=53  Identities=13%  Similarity=0.128  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHc--CcEEEcCCceeEEEEecCC--CcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNS--GSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~--Gg~~~L~~~V~~I~~~~~~--g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      .++.++|.+.+...  |.+++.++.|.+|.+++ +  |+++||..   .+|+  .|+|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~-~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDK-NTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEECS-SSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeC-CccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            47778888888777  99999999999998872 3  38888864   3565  589999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.00  E-value=3.1e-06  Score=89.37  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+++|..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~   44 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVN   44 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccC
Confidence            4689999999999999999999999999999998 78997753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.98  E-value=2.7e-06  Score=84.47  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      |..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            35689999999999999999999999999999974 7888654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.98  E-value=3e-06  Score=89.42  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~A~~VI~~  333 (523)
                      ++.+.+.+.++..|.++++++.|++|..+  ++. +.|++.+|+ ++.+|.||+.
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~G~~~i~~D~vv~a  259 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERD--AQG-TTLVAQDGTRLEGFDSVIWA  259 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEE--TTE-EEEEETTCCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCe-EEEEEeCCcEEEEcCEEEEC
Confidence            67788888888999999999999999765  333 578888999 8999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.8e-06  Score=90.13  Aligned_cols=54  Identities=4%  Similarity=-0.031  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|++|..++ +++.+.|++.+| +++.||.||+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~~v~~~~G~~~i~~D~vv~a  280 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNV-ETDKLKIHMNDSKSIDDVDELIWT  280 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcC-CCcEEEEEECCCcEEEEcCEEEEC
Confidence            3677888888889999999999999997642 332457888889 78999999964

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.98  E-value=2.7e-06  Score=85.99  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G------~~VlvlE~n~~~GG   59 (523)
                      .||||||+|++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            49999999999999999999998      99999999885444

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.96  E-value=3.1e-06  Score=88.96  Aligned_cols=52  Identities=8%  Similarity=0.091  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+.++..|.++++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vv~a  260 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN--TDGSLTLELEDGRSETVDCLIWA  260 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCcEEEEEECCCcEEEcCEEEEC
Confidence            67888888888999999999999999764  32224678889999999999964

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.96  E-value=3.9e-06  Score=86.17  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ++||||||||++||++|+.|++.|.+|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.96  E-value=5.7e-06  Score=88.20  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .++||+|||+|++||++|+.|++.|.+|+|+|+++..+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999987654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.96  E-value=3.9e-06  Score=91.73  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      .+|.++|.+.+...|.+++.++.|.+|..+  +|++.||..   .+|+  .|+|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478899999888899999999999999887  788888875   4676  689999885

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.94  E-value=4.2e-06  Score=89.00  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  283 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVMLA  283 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEEc
Confidence            367888888889999999999999999765  32235788889989999999964

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.94  E-value=6.1e-06  Score=84.68  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.93  E-value=5.4e-06  Score=81.12  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +||+|||+|++|+.+|..|++.|++|+++|+++..|+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~   40 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF   40 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc
Confidence            89999999999999999999999999999998765543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.93  E-value=3.6e-06  Score=88.85  Aligned_cols=42  Identities=31%  Similarity=0.405  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+.||..|++.|++|+++|+++ +||.|..
T Consensus         5 ~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~   46 (464)
T 2eq6_A            5 KTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLN   46 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCC
Confidence            46999999999999999999999999999999998 8987643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.93  E-value=5.9e-06  Score=87.21  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCe---EEEeccCCCCCCCcccc
Q 009881           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~---~G~~---VlvlE~n~~~GG~~~s~   64 (523)
                      +||+|||||.+|++||..|++   .|.+   |+++|+++.+||.|...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~   50 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT   50 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecC
Confidence            699999999999999999999   9999   99999999999988753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.91  E-value=6.1e-06  Score=89.73  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~-~~GG   59 (523)
                      ....+|||||||||++|+.||++|++.|.+|+++|++. .+|+
T Consensus        17 ~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           17 RGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             cccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            34457999999999999999999999999999999985 4554

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.91  E-value=4.4e-06  Score=87.87  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++||||||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~   43 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcC
Confidence            589999999999999999999999999999998 88987643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.90  E-value=4e-06  Score=89.26  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.++++++.|++|..+  +++.+.|++.+|+++.||.||+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEEC
Confidence            367888888889999999999999999765  33335788889999999999964

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.90  E-value=6.6e-06  Score=84.33  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~   57 (523)
                      .||||||||++||++|+.|+++  |.+|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999999876

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.90  E-value=1.5e-05  Score=87.66  Aligned_cols=39  Identities=13%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~GG   59 (523)
                      .++||||||||++||++|+.|++ .|.+|+|+||++..+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~   70 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPME   70 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            46999999999999999999999 9999999999987653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.89  E-value=1.1e-05  Score=89.28  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||||||+|.+|+.||..|++.|++|+++|+++++||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.89  E-value=4.2e-06  Score=88.15  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+.||..|++.|++|+++|+ +.+||.|..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            358999999999999999999999999999999 789998764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.88  E-value=9.9e-06  Score=87.10  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.+...|++++.+ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  216 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNN-RGYISNLLTKEGRTLEADLFID  216 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEETTSCEECCSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcC-CCcEEEEEECCCcEEEeCEEEE
Confidence            578888888888899999999 899998752 5566788888898999999994

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.88  E-value=7.9e-06  Score=80.78  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ++||+|||+|++|+++|..|++.|++|+++|+  ++||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788775

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.88  E-value=7.8e-06  Score=88.94  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          280 ELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       280 eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      .+.+++.+.++. .|.++ ++..|+.|..+  ++++++|.+.+|++++||.||+
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            566777777776 57777 68899999876  6778899888898899999885

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.87  E-value=6e-06  Score=88.73  Aligned_cols=52  Identities=8%  Similarity=-0.004  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++++.+.+..+..|..+++++.|+++...  +++ +.|.+.+++++.+|.|++.
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLvA  314 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLYA  314 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEEc
Confidence            588999999999999999999999999876  444 4677889999999999853

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.87  E-value=4.4e-06  Score=88.99  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~a  274 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALMT  274 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEEC
Confidence            67888888889999999999999999765  444 4677788999999999953

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.87  E-value=1.2e-05  Score=81.84  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +||||||+|++|+.||.+|++.|++|+++|++...+...+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h   41 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH   41 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence            6999999999999999999999999999999986665544

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.86  E-value=1.2e-05  Score=89.59  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ...+||+|||+|.+|+.||..|++.|++|+++|+++++||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            35689999999999999999999999999999999999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=6.7e-06  Score=87.66  Aligned_cols=54  Identities=7%  Similarity=0.003  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~A~~VI~~p  334 (523)
                      .++.+.+.+..+..|.++++++.|++|..++ ++. +.|++.+|++ +.||.||+..
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~~D~vi~a~  271 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIYCV  271 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEECC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-Cce-EEEEECCCcEEEECCEEEECC
Confidence            4778888888899999999999999997541 233 5677889988 9999999653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.86  E-value=8.7e-06  Score=88.27  Aligned_cols=52  Identities=12%  Similarity=0.185  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..+.++|.+.++. .|.++ ++..|+.|..+  ++++++|.+.+|++++|+.||+.
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVLA  175 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVVT  175 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEEc
Confidence            3567777777776 47777 68899999876  67888999999999999999853

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.85  E-value=7.5e-06  Score=85.52  Aligned_cols=34  Identities=9%  Similarity=0.045  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999986

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.84  E-value=1e-05  Score=87.16  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..+||+||||+|.+|+++|.+|+++|++|++||+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            35699999999999999999999999999999998753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.84  E-value=8.7e-06  Score=87.09  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~   56 (523)
                      +||+||||+|.+|+++|.+|++ .|++|||||+...
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            6999999999999999999998 6899999999644

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.84  E-value=1.1e-05  Score=85.22  Aligned_cols=51  Identities=22%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~A~~VI~  332 (523)
                      .++.++|.+.++..|.+++.++.| +|..+  ++++.+|.+. ++.++.||.||+
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g~~~a~~VVl  170 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGLVEDVDKLVL  170 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEEECCCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCCeEEeeeEEE
Confidence            478888988888889999999999 99877  6778787653 334578999885

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.84  E-value=5.8e-06  Score=90.16  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      .+|.++|.+.+...| .+++.++.|.+|..+  ++++++|..   .+|+  +++|+.||+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888988888888 899999999999887  677777753   5676  689999885

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.83  E-value=8.5e-06  Score=86.71  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..+||||||+|++|+++|..|++. ++|+++|+++++||.+..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            468999999999999999999999 999999999999998764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.82  E-value=1.1e-05  Score=87.22  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      ..+||+||||+|.+|+++|.+|++.| .+|+|||+...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 69999999765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.81  E-value=1.4e-05  Score=72.59  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +||+|||+|++|+.+|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.79  E-value=1.1e-05  Score=84.69  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G-----~~VlvlE~n~~~GG~~   61 (523)
                      ..+||||||+|++|+++|..|++.|     .+|+++|+++.+|.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998544

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.74  E-value=2.2e-05  Score=84.72  Aligned_cols=52  Identities=25%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.++.. |++++++ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~-~g~~~~v~~~~G~~i~ad~vI~  246 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDA-NGNIESVRTATGRVFDADLFVD  246 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECT-TSCEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEECCEEEE
Confidence            47888898988888 9999999 999998752 5667789888998999999994

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.73  E-value=2.1e-05  Score=86.50  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHc-Cc-EEEcCCceeEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 009881          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~-Gg-~~~L~~~V~~I~~~~~~g---~~~gV~l---~~G~--~i~A~~VI~  332 (523)
                      ..+...+.+.+... |. +++.++.|.+|..+  ++   +++||..   .+|+  +|+|+.||+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35677777777777 99 89999999999886  45   8888764   4666  589999985

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.73  E-value=1.3e-05  Score=86.23  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .+||+||||+|.+|+++|.+|++ |++|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            46999999999999999999999 999999999876543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.72  E-value=1.7e-05  Score=85.12  Aligned_cols=52  Identities=12%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.++. .|++++.+ .|++|..+. ++.+++|++.+|++++||.||.
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  227 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQ-HGDIEKLITKQNGEISGQLFID  227 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecC-CCcEEEEEECCCCEEEcCEEEE
Confidence            4678888888888 89999999 599998752 5666788888888899999994

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.71  E-value=2.3e-05  Score=83.98  Aligned_cols=41  Identities=15%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +..+||+|||||.+|++||.+|++.|++|+++|+  ++||.+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            3469999999999999999999999999999996  5788775

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.71  E-value=1.9e-05  Score=90.69  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||||||+|.+|+.||..|++.|++|+++|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            368999999999999999999999999999999999999887

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.70  E-value=2.1e-05  Score=85.46  Aligned_cols=50  Identities=24%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.++++++.|++|..+  ++   +|++.+|+++.||.||+.
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~a  277 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLILA  277 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEEc
Confidence            477888888889999999999999999643  23   477789999999999964

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.68  E-value=1.7e-05  Score=83.51  Aligned_cols=42  Identities=14%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-C------CCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-~------G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||+|||+|.+|+.+|..|++ .      |.+|+++|+++++||.++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            45899999999999999999999 7      999999999999999774

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.68  E-value=2.2e-05  Score=83.15  Aligned_cols=52  Identities=8%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +++++.||.||+..
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~a~  278 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLVSV  278 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEECc
Confidence            47778888888999999999999999964   345556765 45689999999643

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.67  E-value=2.7e-05  Score=84.37  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=35.0

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCC
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~   55 (523)
                      .+...+||+||||+|.+|+++|.+|++. |.+|+|||+..
T Consensus        14 ~~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           14 DVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             GTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             hcCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            3556789999999999999999999975 89999999976

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.66  E-value=1.7e-05  Score=84.53  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~  332 (523)
                      ..+.+.|.+.+...|++++.+ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~~~~~~v~~~~g~~~~ad~vV~  224 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDE-RGWISGVHTKQHGEISGDLFVD  224 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEEcCEEEE
Confidence            478888888888899999999 999998752 5667789888898999999994

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.64  E-value=2.3e-05  Score=86.39  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCeEEEeccCCCC--CCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-----~G~~VlvlE~n~~~--GG~~~s~   64 (523)
                      .++||+|||||++||++|+.|++     .|.+|+|+||++..  .|+...+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l   57 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL   57 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEE
Confidence            46899999999999999999999     99999999998764  3444433

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.64  E-value=3.1e-05  Score=81.22  Aligned_cols=41  Identities=10%  Similarity=0.119  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      +.+||||||+|.+|+++|..|++.  |++|+++|++++.|+..
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            457999999999999999999998  88999999999887643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.62  E-value=3.3e-05  Score=89.32  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~   61 (523)
                      +.+||+|||+|.+|++||..|++.|+ +|+++|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            57899999999999999999999999 799999999999975

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.62  E-value=2.7e-05  Score=82.21  Aligned_cols=54  Identities=11%  Similarity=0.132  Sum_probs=44.9

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      ..++.+.+.+.++..|.+++++++|++|..+  ++++ .|++.+|+++.||.||+..
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g~~i~aD~Vv~a~  254 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKV-ARVITDKRTLDADLVILAA  254 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBE-EEEEESSCEEECSEEEECS
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeE-EEEEeCCCEEEcCEEEECC
Confidence            3578888889999999999999999999764  5554 4777899999999999653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.61  E-value=2.9e-05  Score=81.85  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~   62 (523)
                      ..+||+|||+|++|+.+|..|++.|  ++|+++|+++++||.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3579999999999999999999999  99999999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.61  E-value=2.9e-05  Score=84.54  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ...+||||||+|.+|++||..|++.|++|+++|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45699999999999999999999999999999983

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.59  E-value=4.1e-05  Score=81.64  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      +.+||+||||+|.+|+++|.+|++.|++|+++|+..+.+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999998765

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.53  E-value=4.3e-05  Score=82.52  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~GG   59 (523)
                      +||+||||+|.+|+++|.+|++ .|++|+|||+....++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999877643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.52  E-value=5e-05  Score=79.67  Aligned_cols=52  Identities=6%  Similarity=0.117  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.+++++++|++|..+  ++++ .|++.+| ++.||.||+..
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~A~  240 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIFAL  240 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEECc
Confidence            578888888889999999999999999764  5555 7877666 89999999643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.49  E-value=6.1e-05  Score=78.98  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.+++++++|++|..+  ++++..|.+ +|+++.||.||+..
T Consensus       191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~a~  243 (452)
T 2cdu_A          191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAILCI  243 (452)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEECC
T ss_pred             hhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEECc
Confidence            578888889899999999999999999764  566656764 88899999999643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.44  E-value=0.00011  Score=78.47  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..+||+||||+|.+|+++|.+|++.|++|++||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            35799999999999999999999999999999998754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.44  E-value=8.3e-05  Score=80.77  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~   57 (523)
                      +.+||+||||+|.+|+++|.+|++ .|++|++||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            467999999999999999999999 89999999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.44  E-value=9.7e-05  Score=79.54  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~~~GG   59 (523)
                      ..||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            579999999999999999999998 999999999877643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.43  E-value=0.00011  Score=76.54  Aligned_cols=57  Identities=7%  Similarity=0.014  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      .++.+.+.+.++..|.++++++.|++|..+.+++++.+|++.+|+++.||.||+...
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G  247 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  247 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            467888888889999999999999999751015666788889999999999997543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.40  E-value=5.8e-05  Score=77.97  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~  336 (523)
                      .++.+.+.+..+..|.++++++.|++|.    .+   +|++++|+++.||.||+.+..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~----~~---~v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIR----EH---EIVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEC----SS---EEEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC----CC---eEEECCCCEEeeeEEEECCCC
Confidence            3677888888899999999999999983    22   367789999999999965443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.39  E-value=9.1e-05  Score=77.56  Aligned_cols=52  Identities=10%  Similarity=0.026  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.++++++.|++|..   +++++.|.+ +|+++.||.||+..
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~d~vi~a~  242 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKVVT-DKNAYDADLVVVAV  242 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEEEE-SSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc---cCcEEEEEE-CCCEEECCEEEECc
Confidence            46788888888899999999999999964   344445665 67789999999643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.38  E-value=0.00011  Score=78.17  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      ++.+.+.+..+..|.++++++.|++|..+  +++ +.|++++|+++.||.||+..
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a~  278 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAAV  278 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEECC
Confidence            57788888888999999999999999765  444 47888999999999999653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.37  E-value=0.00014  Score=77.11  Aligned_cols=52  Identities=10%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+..+..|.++++++.|++|..   ++++..|.+ +|+++.||.||+..
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~a~  287 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVILAV  287 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEECC
Confidence            46778888888899999999999999963   344445665 78899999999654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.35  E-value=0.00013  Score=74.78  Aligned_cols=53  Identities=17%  Similarity=0.078  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+.++..|.++++++.|++|..+  ++. +.|++.+|+++.||.||+..
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a~  239 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSAV  239 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEECc
Confidence            367888888888999999999999999765  333 57888899999999999753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.34  E-value=0.00013  Score=75.50  Aligned_cols=50  Identities=22%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~  335 (523)
                      .++.+.+.+..+..|.++++++.|++|. +  +    +|++.+|+++.||.||+...
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a~G  236 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVGIG  236 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEECcC
Confidence            3677888888899999999999999996 3  3    56778999999999997543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.29  E-value=0.00016  Score=73.64  Aligned_cols=46  Identities=20%  Similarity=0.186  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+..+..|.++++++.|++|.    .+   +|++.+|+ +.+|.||+.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~----~~---~v~~~~g~-i~~D~vi~a  229 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEAN----EE---GVLTNSGF-IEGKVKICA  229 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEEC----SS---EEEETTEE-EECSCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEE----ee---EEEECCCE-EEcCEEEEC
Confidence            677888888889999999999999984    12   46678888 999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.23  E-value=0.00016  Score=75.46  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~---~G~~VlvlE~n~~~   57 (523)
                      ..||||||||++|+.+|..|++   .|.+|+++|+++++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999999   89999999999965

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.17  E-value=0.00027  Score=73.09  Aligned_cols=53  Identities=11%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p  334 (523)
                      .++.+.+.+..+..|.++++++.|++|..+   ++..+|++++|+++.||.||+..
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a~  237 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALICV  237 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEee
Confidence            467788888888999999999999999643   35568889999999999999754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.17  E-value=0.00022  Score=76.80  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~G   58 (523)
                      .||+|||||++|++||..|++.  |.+|+++|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  89999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.17  E-value=0.00011  Score=78.22  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ...+||||||+|.+||++|++|.++|...+++|+.+..|+.+..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~   80 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKIC   80 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEE
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCccee
Confidence            34599999999999999999999987776666666666665543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.95  E-value=0.00049  Score=73.23  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .+..|||||+|.+|+.+|..|++.|++|+++|++++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            356799999999999999999999999999999986

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.88  E-value=0.00054  Score=70.32  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~GG~   60 (523)
                      ..|||||+|.+|+++|.+|++.|+  +|+++|++++++.+
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~   42 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC   42 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc
Confidence            369999999999999999998874  89999999875444

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.82  E-value=0.00091  Score=68.58  Aligned_cols=39  Identities=10%  Similarity=0.243  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      +...|||||+|++|+.||..|++.|.+|+++|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            346899999999999999999888999999999998773

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.68  E-value=0.00097  Score=69.57  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|+++.    .+   .|.+++|+++.||.||+.
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEEE
Confidence            5777888888899999999999999873    22   366789999999999853

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.56  E-value=0.0012  Score=68.64  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~   57 (523)
                      .|||||+|.+|+++|..|++.|  .+|+++|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            6999999999999999999876  789999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.42  E-value=0.015  Score=60.45  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999987663

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.41  E-value=0.015  Score=51.15  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|||+|.-|+.+|..|.+.|++|+++|++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4579999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.33  E-value=0.016  Score=49.40  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|||+|..|...|..|++.|++|.++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.27  E-value=0.014  Score=59.75  Aligned_cols=38  Identities=16%  Similarity=0.026  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999988665

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.91  E-value=0.021  Score=56.01  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3799999999999999999999999999999987643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.90  E-value=0.028  Score=49.09  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4579999999999999999999999999999973

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.83  E-value=0.028  Score=58.62  Aligned_cols=56  Identities=14%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             CCCCCCCccCCCCCCC----CCCC-CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881            1 MTGNESESELPVPPYP----PIEP-TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus         1 ~~~~~~~~~~~~~~~~----~l~~-~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      |+++-...+|-+|+-.    +..+ .-..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        28 ~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           28 MEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             HHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3455566678888322    2222 224699999999999999999999999999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.68  E-value=0.04  Score=47.42  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||.|--|..+|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999974

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.66  E-value=0.03  Score=48.09  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|--|..+|..|++.|++|.++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.61  E-value=0.024  Score=59.14  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998865

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.58  E-value=0.032  Score=56.72  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++....
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            579999999999999999999999999999999876643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.47  E-value=0.033  Score=58.27  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.43  E-value=0.032  Score=58.09  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5899999999999999999999999999999988754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.40  E-value=0.037  Score=58.02  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999988763

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.36  E-value=0.034  Score=57.94  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            5799999999999999999999999999999988654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.35  E-value=0.032  Score=56.45  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.35  E-value=0.038  Score=49.78  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~-G~~VlvlE~n~   55 (523)
                      +...-.|+|||.|..|..+|..|.+. |++|+++|++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            33445799999999999999999999 99999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.03  E-value=0.052  Score=44.49  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ..|+|+|+|..|..+|..|.+.| ++|.+++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 9999999863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.97  E-value=0.05  Score=55.83  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999987654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.95  E-value=0.045  Score=53.41  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            57999999999999999999999999999987653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.88  E-value=0.048  Score=56.74  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.60  E-value=0.055  Score=53.64  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|.|||+|.-|...|..++++|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.47  E-value=0.062  Score=56.12  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            4799999999999999999999999999999988653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.42  E-value=0.044  Score=57.56  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            35799999999999999999999999999999988765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.33  E-value=0.08  Score=51.44  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.20  E-value=0.078  Score=55.45  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999998765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.20  E-value=0.068  Score=45.46  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|-.|..+|..|.+.|++|.++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            359999999999999999999999999999863

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.19  E-value=0.082  Score=54.65  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999887554

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.12  E-value=0.074  Score=55.99  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            5799999999999999999999999999999988754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.11  E-value=0.14  Score=51.51  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=37.1

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        12 ~~~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..|-++-.+.++||||||+|++|+++|+.|+++|++|+|+|+++..||
T Consensus         7 ~~~~~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A            7 HMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             -------CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             hHHHhhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            334444455679999999999999999999999999999999975554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=93.03  E-value=0.08  Score=55.19  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=92.99  E-value=0.091  Score=55.35  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      .-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            357999999999999999999999999999999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.97  E-value=0.097  Score=51.28  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999999999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=92.96  E-value=0.068  Score=56.09  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            5799999999999999999999999999999988754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.91  E-value=0.077  Score=53.00  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            479999999999999999999999999999988754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.87  E-value=0.072  Score=49.45  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|||+|--|..+|..|.+.|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.86  E-value=0.089  Score=53.92  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  180 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV  180 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch
Confidence            4799999999999999999999999999999988754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=92.83  E-value=0.097  Score=51.59  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .....|.|||+|.-|...|..|+++|++|.++|++..
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3446799999999999999999999999999999763

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.83  E-value=0.1  Score=55.73  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45799999999999999999999999999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.83  E-value=0.097  Score=54.29  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            8999999999999999999999999999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=92.80  E-value=0.093  Score=51.07  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            579999999999999999999999999999998773

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.68  E-value=0.074  Score=55.48  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.63  E-value=0.099  Score=52.76  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++++....|.|||.|.-|...|..|+++|++|.++|++.
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            345566789999999999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.48  E-value=0.12  Score=47.69  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45799999999999999999999999999998865

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=92.47  E-value=0.11  Score=55.63  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.++
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            445799999999999999999999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=92.44  E-value=0.1  Score=54.61  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            5799999999999999999999999999999988653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.37  E-value=0.11  Score=50.58  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999999887

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.33  E-value=0.11  Score=54.82  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4799999999999999999999999999999988754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.31  E-value=0.11  Score=54.61  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.28  E-value=0.13  Score=52.49  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999999876543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.28  E-value=0.12  Score=50.69  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34579999999999999999999999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.22  E-value=0.13  Score=51.23  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ...|.|||+|..|..+|..|++.|+ +|.++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4689999999999999999999998 999999985

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.18  E-value=0.098  Score=51.65  Aligned_cols=47  Identities=21%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             ccCCCC-CCCCC-CCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881            8 SELPVP-PYPPI-EPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus         8 ~~~~~~-~~~~l-~~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ..|+-+ +|+.+ .+....|.|||+|.-|...|..|+++|+ +|.++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A            8 SSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -----------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             ccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            445544 45555 3334689999999999999999999999 99999997

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.15  E-value=0.13  Score=50.99  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            469999999999999999999999999999976

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.13  E-value=0.13  Score=49.65  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998763

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.09  E-value=0.13  Score=53.73  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4799999999999999999999999999999987654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.09  E-value=0.12  Score=50.71  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998763

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.08  E-value=0.12  Score=55.34  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            446799999999999999999999999999999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.05  E-value=0.13  Score=51.45  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=92.04  E-value=0.11  Score=54.18  Aligned_cols=36  Identities=11%  Similarity=0.035  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|.+|+-+|..|++.|++|+++++++.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            479999999999999999999999999999987753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.04  E-value=0.13  Score=53.68  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=92.02  E-value=0.23  Score=51.19  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG~   60 (523)
                      |.++||||||+|++|+++|+.|+++| ++|+|+|+++.+|+.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g   62 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSG   62 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCC
Confidence            46799999999999999999999999 999999996666543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=92.00  E-value=0.13  Score=50.24  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999998763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.00  E-value=0.14  Score=52.32  Aligned_cols=38  Identities=24%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~  190 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR  190 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh
Confidence            47999999999999999999999999999999987554

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=92.00  E-value=0.14  Score=50.28  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            479999999999999999999999999999998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.99  E-value=0.14  Score=51.64  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +....|.|||+|.-|...|..|+++|++|.++++++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            345689999999999999999999999999999874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=91.98  E-value=0.18  Score=54.12  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+.+|||||||||++|+.+|+.|+++|++|+++|+++..||...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            44679999999999999999999999999999999987776543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=91.97  E-value=0.13  Score=53.43  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            4799999999999999999999999999999987654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=91.95  E-value=0.12  Score=53.41  Aligned_cols=38  Identities=11%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ..++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~  185 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL  185 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc
Confidence            37999999999999999999999999999999887543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=91.92  E-value=0.13  Score=50.75  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            579999999999999999999999999999998763

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.92  E-value=0.12  Score=53.44  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~   57 (523)
                      -+|+|||+|.+|+-+|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998765

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.85  E-value=0.14  Score=50.47  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999987644

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=91.82  E-value=0.29  Score=48.81  Aligned_cols=42  Identities=31%  Similarity=0.350  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ++||||||+|++|+++|+.|+++|++|+|+|+++..+|...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~   43 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH   43 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC
Confidence            489999999999999999999999999999999887665433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.81  E-value=0.13  Score=50.62  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|.+.|..|+++|++|.+++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            468999999999999999999999999999975

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.79  E-value=0.14  Score=50.97  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|.-|...|..|+++|++|.++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~   36 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA   36 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH
Confidence            3579999999999999999999999999999853

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.67  E-value=0.16  Score=52.83  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|.|||.|.+|+++|..|.+.|++|.+.|+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            45799999999999999999999999999999863

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.57  E-value=0.14  Score=50.68  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCC
Q 009881           15 YPPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (523)
Q Consensus        15 ~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G----~~VlvlE~n~   55 (523)
                      -+++++....|.|||+|.-|...|..|+++|    ++|.+++++.
T Consensus        15 ~~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           15 TENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CchhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3556666678999999999999999999999    8999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.49  E-value=0.16  Score=49.58  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=91.47  E-value=0.24  Score=51.55  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .-.|+|||+|..|+-+|..|++.|.+|+++++.+++....
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            3579999999999999999999999999999999876543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.42  E-value=0.16  Score=54.31  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=33.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999987654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.33  E-value=0.22  Score=52.07  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=91.27  E-value=0.16  Score=49.62  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            479999999999999999999999999999988763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.27  E-value=0.16  Score=52.83  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999875

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=91.25  E-value=0.41  Score=48.28  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      .++||||||+|++|+++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            35899999999999999999999999999999998765

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.23  E-value=0.18  Score=52.22  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....+.|||.|..||.+|+.|++.|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34579999999999999999999999999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=91.21  E-value=0.19  Score=47.62  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ......|.|||+|.-|...|..|+++|++|++++++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3445679999999999999999999999999999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=91.05  E-value=0.21  Score=52.35  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            47999999999999999999999999999999987553

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.01  E-value=0.21  Score=51.83  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999887543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.00  E-value=0.18  Score=49.26  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|.|||.|.-|...|..|+++|++|.++|++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=90.99  E-value=0.14  Score=53.17  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~   57 (523)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45899999999999999999999  9999999998653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.95  E-value=0.21  Score=52.38  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~-G~-~VlvlE~n~~   56 (523)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5799999999999999999999 99 9999999876

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=90.91  E-value=0.2  Score=52.40  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            5799999999999999999999999999999888653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=90.86  E-value=0.19  Score=49.13  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            5699999999999999999999999999999987644

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=90.83  E-value=0.44  Score=51.13  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .++||||||||++|+.+|+.|+++|++|+|+|+++..+|
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            469999999999999999999999999999999986655

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.83  E-value=0.18  Score=52.22  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.78  E-value=0.21  Score=51.94  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...+.|||+|.-|+..|..|+++|++|+++|++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999999999999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=90.77  E-value=0.2  Score=49.99  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            4799999999999999999999999999999987654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.70  E-value=0.21  Score=48.78  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +..|.|||+|.-|...|..|+ +|++|+++|++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            467999999999999999999 999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.69  E-value=0.23  Score=46.50  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +.....|+|||+|-.|...|..|.++|.+|+|++++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            556678999999999999999999999999999975

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.67  E-value=0.12  Score=48.82  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ....|.|||+|.-|...|..|+++|++|..++++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            3457999999999999999999999999999985

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.64  E-value=0.21  Score=46.53  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .....|+|.|+ |.-|..+|..|.++|++|.++.++.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            34567999997 9999999999999999999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.43  E-value=0.23  Score=52.69  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999876543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.42  E-value=0.6  Score=43.50  Aligned_cols=52  Identities=17%  Similarity=0.061  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++.. |.+++ ++.|++|..+  ++++++|++.+|++++||.||..
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~A  120 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVLA  120 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            36667777777776 77776 7899999876  66777888888989999999953

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.32  E-value=0.16  Score=53.04  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+.|||+|+|-.|..+|..|++.|++|+++|++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4679999999999999999999999999999974

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=90.28  E-value=0.33  Score=47.38  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.||| +|.-|...|..|+++|++|.+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3699999 999999999999999999999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.23  E-value=0.15  Score=49.42  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +.....|+|||+|-.|...|..|.+.|.+|+|++++..
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            44567899999999999999999999999999998653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.16  E-value=0.3  Score=48.00  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|.|||+|.-|...|..|++.|++|.+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36799999999999999999999999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.09  E-value=0.17  Score=49.32  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|--|...|..|+++|++|.+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            469999999999999999999999999999874

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.07  E-value=0.26  Score=48.97  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ..+.|||+|--|...|..|+++|++|.+++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57999999999999999999999999999986

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.06  E-value=0.28  Score=52.75  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            47999999999999999999999999999999887654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=90.05  E-value=0.17  Score=52.50  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..|.|||.|.+|+.+|..|++.|++|.+.|.++..
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            46899999999999999999999999999998865

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=90.05  E-value=0.48  Score=47.42  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ++||||||+|++|+++|+.|+++|++|+|+|+++..|
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999988766

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.04  E-value=0.28  Score=48.49  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|.-|...|..|+++|++|.++|++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3579999999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.99  E-value=0.25  Score=48.73  Aligned_cols=34  Identities=15%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|.|||+|--|...|..|+++|++|.++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3467999999999999999999999999999 664

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.98  E-value=0.26  Score=47.77  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999999753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=89.98  E-value=0.31  Score=50.77  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            5799999999999999999999999999999988754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=89.98  E-value=0.26  Score=51.89  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  220 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY  220 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc
Confidence            57999999999999999999999999999999987653

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.96  E-value=0.29  Score=47.00  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|.|+|.-|..++..|.++|++|..+.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=89.93  E-value=0.26  Score=51.70  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=89.87  E-value=0.23  Score=53.56  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      -.|+|||+|..|+-+|..|++.|.+|++++++
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999987

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.84  E-value=0.27  Score=50.17  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999999863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.81  E-value=0.27  Score=48.34  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|-.|...|..|+++|+  +|.++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.79  E-value=0.34  Score=47.78  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|+  +|.++|++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999986

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=89.70  E-value=0.27  Score=47.64  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            5799999999999999999999999999999988755

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=89.67  E-value=0.22  Score=52.83  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998775

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.67  E-value=0.28  Score=50.68  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|.-|+..|..|++ |++|+++|++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            3579999999999999999998 99999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=89.61  E-value=0.33  Score=48.57  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||.|.-|...|..|.++|++|.++|++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999999999999999999999885

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.55  E-value=0.3  Score=44.74  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            488999 99999999999999999999999863

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=89.48  E-value=0.72  Score=48.42  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~---~G~~VlvlE~n~~   56 (523)
                      +||||||||++|+++|+.|++   .|.+|+|+|+++.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            699999999999999999999   9999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.48  E-value=0.32  Score=45.07  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.46  E-value=0.3  Score=48.15  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|+++|+ +|.++|++.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999975

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=89.45  E-value=0.74  Score=49.00  Aligned_cols=37  Identities=8%  Similarity=0.146  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~---~G~~VlvlE~n~~   56 (523)
                      +..+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            457899999999999999999999   9999999999764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.38  E-value=0.18  Score=43.35  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|++.|.+|.+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.32  E-value=0.37  Score=47.28  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||.|.-|...|..|+++|++|.++|++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=89.12  E-value=0.3  Score=50.42  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..-|||.|.-|+..|..|+++|++|+++|++..
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999999999999999853

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=89.11  E-value=0.31  Score=51.11  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +++.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            456789999999999999999999999999999873

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.05  E-value=0.2  Score=46.58  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEE-eccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~Vlv-lE~n~   55 (523)
                      ...|.|||+|.-|...|..|+++|++|.+ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            35799999999999999999999999999 88764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=89.02  E-value=0.39  Score=47.45  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      .+....|.|||+|..|..+|..|++.|. +|.++|.+
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3445689999999999999999999999 99999997

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.96  E-value=0.34  Score=49.84  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|||||.|-.|..+|..|.+.|++|+++|++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=88.92  E-value=0.34  Score=46.77  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            47999999999999999999999999999999876

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=88.91  E-value=0.8  Score=47.31  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .++||||||||++|+++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3689999999999999999999999999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=88.89  E-value=0.36  Score=47.03  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4799999999999999999999999999999988744

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.80  E-value=0.26  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|.-|...|..|+++|++|.++|++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999999853

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=88.80  E-value=0.31  Score=49.84  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|..|+..|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58899999999999999999 99999999874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.74  E-value=0.28  Score=48.48  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      .|.|||+|.-|...|..|+++|++|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.68  E-value=0.26  Score=48.14  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~-----G-~~VlvlE~n   54 (523)
                      ..|.|||+|.-|...|..|+++     | ++|.++++.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~   46 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARG   46 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcH
Confidence            5799999999999999999999     9 999999873

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.65  E-value=0.28  Score=49.65  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999885

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.65  E-value=0.41  Score=47.52  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|++.|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999975

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=88.61  E-value=0.39  Score=50.32  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=88.58  E-value=0.38  Score=47.18  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|...|..|+..|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999874

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.55  E-value=0.39  Score=47.16  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|--|.+.|..|+ +|.+|.+++++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=88.48  E-value=0.78  Score=46.52  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .++||||||||++|+++|+.|++.|++|+|+|+++..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~   40 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP   40 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4589999999999999999999999999999999754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.48  E-value=0.26  Score=49.53  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=88.45  E-value=0.51  Score=49.11  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~   57 (523)
                      .-+|+|||+|..|+-+|..+.+.|. +|++++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999999999997 59999998865

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=88.33  E-value=0.47  Score=47.00  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|..|..+|..|+..|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999874

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=88.28  E-value=0.44  Score=49.91  Aligned_cols=34  Identities=9%  Similarity=-0.023  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP  219 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc
Confidence            4699999999999999999999999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=87.97  E-value=1.1  Score=48.13  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC------CC---------cEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA------SG---------QDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~------~G---------~~i~A~~VI~  332 (523)
                      .++.+.|.+.++..|.+|+.++.|++|..++ ++++++|++.      +|         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            4788889888888999999999999998762 4677788875      33         6899999995

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=87.89  E-value=0.45  Score=47.11  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~-aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46899999999996 78899999999999999864

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=87.80  E-value=0.76  Score=46.37  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .++||||||||++|+++|..|+++|.+|+|+|+++..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4589999999999999999999999999999998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.76  E-value=0.41  Score=45.44  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G----~~VlvlE~n~~   56 (523)
                      ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            357999999999999999999999    79999998865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.64  E-value=0.48  Score=46.57  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~   55 (523)
                      .|.|||+|..|...|..|++.  |.+|.++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999996  89999999985

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.62  E-value=0.46  Score=49.87  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  79999999863

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=87.58  E-value=0.63  Score=49.18  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999985

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.57  E-value=0.42  Score=49.96  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~   55 (523)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.53  E-value=0.62  Score=44.80  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ...|+|+|+|-.|..+|.+|++.|.+|.+++++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            346999999999999999999999999999886

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.52  E-value=0.5  Score=45.31  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48899999999999999999999999999874

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=87.50  E-value=0.47  Score=45.33  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            57999999999999999999999 9999998775

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=87.44  E-value=0.49  Score=47.38  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|+|+|+|..|..+|.++.+.|++|.++|++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999998753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=87.41  E-value=0.31  Score=48.64  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G-------~~VlvlE~n~~   56 (523)
                      ...|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.37  E-value=0.5  Score=45.84  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.32  E-value=1.2  Score=46.24  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~G   58 (523)
                      ..||||||+|++|++||..|++.  |++|+++|++++.|
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999999  99999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.29  E-value=0.44  Score=47.00  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++| ++|.++|++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999985

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=87.12  E-value=0.59  Score=49.80  Aligned_cols=36  Identities=14%  Similarity=0.008  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.++|||+|..|+=.|..+++-|.+|+++++...+-
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~  259 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR  259 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc
Confidence            579999999999999999999999999999866553

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.12  E-value=0.46  Score=45.14  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4889999999999999999999 9999999874

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=87.03  E-value=0.53  Score=45.56  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=86.85  E-value=0.58  Score=48.97  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.82  E-value=0.51  Score=48.28  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.82  E-value=0.29  Score=45.76  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..++|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            469999999999999999999999 99999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=86.78  E-value=1.3  Score=46.39  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEec--------cCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE--------~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46999999999999999999999 999999999        46789997654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.74  E-value=0.63  Score=42.40  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+| +|..|..++..|.++|++|.++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            489999 59999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=86.66  E-value=1.4  Score=45.93  Aligned_cols=49  Identities=27%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ...++.+.++||||||+|++|++||..|++.|++|+++|+ +.+||.|..
T Consensus        18 ~~~~M~~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           18 GPGSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             ------CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCCCcCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            3334444579999999999999999999999999999999 789997654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=86.64  E-value=1.4  Score=46.74  Aligned_cols=38  Identities=5%  Similarity=0.161  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~---~G~~VlvlE~n~~~   57 (523)
                      +..+||||||||++|+++|+.|++   .|.+|+|+|+.+..
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            346899999999999999999999   99999999997643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=86.63  E-value=1.4  Score=46.24  Aligned_cols=43  Identities=33%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEec--------cCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE--------~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            46999999999999999999999 999999999        46789997654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.59  E-value=0.56  Score=44.83  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|.|+|.-|..++.+|.++|++|..+.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            469999999999999999999999999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=86.47  E-value=0.76  Score=45.12  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.++-+.....|+|.|+ |.-|..+|..|++.|++|.+++++.
T Consensus        12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34444444557999997 9999999999999999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=86.42  E-value=0.54  Score=48.94  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHh--------------------hCCC-eEEEeccCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La--------------------~~G~-~VlvlE~n~~~   57 (523)
                      .-.|+|||+|..|+-+|..|+                    +.|. +|.++++++..
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            357999999999999999999                    6786 79999997643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.30  E-value=0.6  Score=45.21  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++|.++|++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.29  E-value=0.51  Score=52.14  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.23  E-value=0.54  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      ...|+|||+|-.|+.+|..|+++|. +++++|+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            3579999999999999999999996 89999985

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=86.21  E-value=0.7  Score=45.77  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ....|.|||+|..|.++|..|+..|. +|.++|.+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            44689999999999999999999999 999999876

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=86.21  E-value=0.61  Score=45.05  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+ |.-|...|..|+++|++|.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=86.20  E-value=1.4  Score=46.17  Aligned_cols=39  Identities=38%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .++||||||||++|+++|+.|++.|++|+|+|+++..+|
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            568999999999999999999999999999999875443

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=86.14  E-value=1.7  Score=45.52  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~G   58 (523)
                      +..+||||||+|.+|+.||..|++.  |.+|+++|++++.|
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4579999999999999999999887  89999999998765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=86.12  E-value=0.64  Score=48.75  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=86.05  E-value=0.85  Score=47.56  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999854

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=85.98  E-value=0.65  Score=47.11  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .-.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.96  E-value=0.66  Score=44.54  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|++.|+  +|.++|++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=85.91  E-value=0.55  Score=46.34  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|...|..|+++|+  +|.++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.89  E-value=0.72  Score=44.54  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~---~VlvlE~n~   55 (523)
                      ...|.|||+|.-|...|..|.++|+   +|.++|++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3569999999999999999999999   999999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=85.84  E-value=0.65  Score=45.78  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           19 EPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        19 ~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ......|+|.|| |.-|..++..|.+.|++|.+++++..-
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            334567999998 999999999999999999999988643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.75  E-value=0.79  Score=41.14  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+ |.-|..++..|.+.|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46899998 9999999999999999999999874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.72  E-value=0.73  Score=42.15  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|.|+ |.-|..++..|.++|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899997 9999999999999999999998863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=85.66  E-value=1.7  Score=38.22  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++.+| ++.||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            477888888888999999999 99999765  333 56777777 8999999964

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=85.63  E-value=1.7  Score=44.29  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      |.++||||||+|++|+.+|+.|++.|.+|+|+|+++.+|+.+.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            4569999999999999999999999999999999999887653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=85.58  E-value=0.82  Score=45.19  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ....|.|||+|..|.++|..|+..|. +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            34679999999999999999999998 999999976

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.57  E-value=0.69  Score=48.70  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=85.57  E-value=0.38  Score=48.98  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCcee---------EEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~---------~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .+.|..|.   ..+.++|.+.+...|++++.+++|+         +|..+  ++++ +|++.+| +++||.||..
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~A  231 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIVA  231 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEEC
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEEC
Confidence            44555553   5788999999989999999999999         88655  4554 7776555 7999998853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.57  E-value=0.68  Score=46.71  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|-.|+.+|..|+..|.+|+++|++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=85.54  E-value=0.66  Score=48.56  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999863

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=85.50  E-value=0.69  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|+|+|-.|+.+|..|...|.+|+++|++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=85.49  E-value=0.71  Score=45.97  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++|.+.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999999875

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=85.49  E-value=1.5  Score=46.07  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      +.++||||||||++||++|+.|++.|++|+|+|+++..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            35699999999999999999999999999999999754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=85.46  E-value=0.83  Score=44.05  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .|+|.|| |+-|..++.+|.++|++|.++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5899997 999999999999999999999887543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=85.29  E-value=0.81  Score=44.04  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|||+|-+|..+|.+|++.|.+|.|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=85.14  E-value=1.8  Score=45.58  Aligned_cols=36  Identities=11%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCeEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~------------~G~~VlvlE~n~~   56 (523)
                      ..+||||||||++|+++|+.|++            .|.+|+|+|+++.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            45899999999999999999999            9999999999764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.14  E-value=0.69  Score=44.51  Aligned_cols=34  Identities=6%  Similarity=0.133  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|+|+|-.|..+|.+|++.|.+|.++.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3469999999999999999999999999999873

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=85.13  E-value=0.5  Score=47.71  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-------~~VlvlE~n~~   56 (523)
                      ..|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            36999999999999999999999       99999998765

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=85.11  E-value=1.8  Score=47.19  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +.++||||||+|++||+||+.|+++|.+|+||||....||..
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            346899999999999999999999999999999998776654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.09  E-value=0.47  Score=48.34  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCeEEEec
Q 009881           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE   52 (523)
                      ..|.|||+|.-|...|..|++ +|++|.+++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            469999999999999999998 599999999

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=85.05  E-value=0.8  Score=44.96  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|+..|. +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=85.03  E-value=1.5  Score=45.44  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||+|.+|+++|..|++.|++|+++|+ +.+||.|..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   45 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVI   45 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccc
Confidence            469999999999999999999999999999999 789997653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=84.83  E-value=0.64  Score=51.44  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=32.9

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIG--aGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799998  99999999999999999999999988 544

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=84.83  E-value=1.7  Score=46.66  Aligned_cols=42  Identities=29%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +.++||||||+|++||+||+.|+++|.+|+||||+...||..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            346899999999999999999999999999999998876643

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=84.73  E-value=0.83  Score=45.29  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ...|.|||+|..|.++|..|+..|.  +|.++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4579999999999999999999997  899999863

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=84.72  E-value=0.73  Score=44.30  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=84.69  E-value=0.47  Score=54.32  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999988754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=84.64  E-value=0.68  Score=45.38  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~   55 (523)
                      .|.|||+|..|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6899999999999999999999  7999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=84.61  E-value=0.89  Score=44.86  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ...|.|||+|..|..+|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999999874

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=84.61  E-value=0.58  Score=51.64  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=84.59  E-value=0.85  Score=43.18  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            469999999999999999999999999999874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=84.57  E-value=0.92  Score=42.73  Aligned_cols=33  Identities=12%  Similarity=0.206  Sum_probs=28.5

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -|+|.|+ |--|..+|..|++.|.+|.+++++..
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4788886 56799999999999999999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.54  E-value=1  Score=43.90  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ...|+|||+|-.|..+|..|++.|. +|.++.|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3469999999999999999999997 999998873

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.24  E-value=0.77  Score=47.78  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +.....|+|||+|-.|...|..|.+.|.+|+|++++
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            445567999999999999999999999999999985

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=84.23  E-value=0.74  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999999 99999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=84.11  E-value=1.3  Score=47.55  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+|.++||||||||++|+++|+.|++.|++|+|+|+++..++
T Consensus        19 ~~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~   60 (591)
T 3i3l_A           19 SHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY   60 (591)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence            456679999999999999999999999999999999976544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=84.07  E-value=0.86  Score=46.09  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=84.05  E-value=0.87  Score=48.36  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            45799999999999999999999999999998653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=84.00  E-value=1.1  Score=44.24  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCeEEEeccC
Q 009881           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGaG-l~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ....|+|||+| +.|..+|..|.+.|.+|++++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            44689999999 67999999999999999988664

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=83.89  E-value=1.7  Score=41.84  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=32.6

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        13 ~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |..+..+....-|+|.|+ |--|..+|..|++.|++|.+++++.
T Consensus        17 ~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           17 AMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            333444444456888875 6789999999999999999998864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.77  E-value=0.98  Score=42.75  Aligned_cols=42  Identities=10%  Similarity=-0.088  Sum_probs=31.5

Q ss_pred             CCCCCCCCcccEEEECC---ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           14 PYPPIEPTAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGa---Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.+.......-|+|.|+   |--|..+|..|++.|.+|.++++++
T Consensus         6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            33444445567899996   3678999999999999999998874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=83.75  E-value=0.93  Score=45.90  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      .+-.|||+|+|-+|..+|..|...|. +|.++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            44689999999999999999999998 999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.71  E-value=1  Score=42.16  Aligned_cols=43  Identities=19%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        13 ~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++.++.+....-|+|.|+ |--|..+|..|++.|.+|.+++++.
T Consensus         5 ~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A            5 HHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             ----CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            345555556667888886 5569999999999999999998853

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.71  E-value=0.83  Score=41.94  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|.| +|.-|..++..|.+.|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            4699999 59999999999999999999999974

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=83.67  E-value=1.9  Score=46.59  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~-~~G   58 (523)
                      .+|||||||||++|+.||++|++.|.+|+++|++. .+|
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            46999999999999999999999999999999984 444

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=83.65  E-value=1.7  Score=46.95  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +.++||||||+|++||.||+.|+++|.+|+||||....||..
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            346899999999999999999999999999999988776653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.63  E-value=1  Score=42.39  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC----eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~----~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|.++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            368999999999999999999998    999999974

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=83.33  E-value=0.92  Score=41.51  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|.| +|.-|..++..|.++|++|..+.++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            489999 89999999999999999999999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=83.30  E-value=0.86  Score=43.88  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|+|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999999873

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=83.29  E-value=0.98  Score=45.61  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n   54 (523)
                      .+..|+|+|+|-+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45689999999999999999999997 89999998

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=83.23  E-value=0.83  Score=44.57  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|-+||-|.-|...|..|.++|++|.++|++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            599999999999999999999999999998763

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=83.21  E-value=1.3  Score=42.18  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+.|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999873

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.07  E-value=1.7  Score=41.05  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CcccEEEECC-Ch-hHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGT-GL-PESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGa-Gl-~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...-|+|.|+ |- -|..+|..|++.|.+|++++++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            3456899998 74 89999999999999999999864

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=83.07  E-value=1  Score=45.67  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=35.1

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC---eEEEeccCC-CCCCC
Q 009881           22 AFDLIVIGT-GLPESVISAAASASGK---SVLHLDPNP-FYGSH   60 (523)
Q Consensus        22 ~~DVIIIGa-Gl~GL~aA~~La~~G~---~VlvlE~n~-~~GG~   60 (523)
                      .-.|+|||+ |..|+.|+..+..-|.   .|.++|.+. .-||+
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            468999999 9999999999999997   999999987 55776

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=83.06  E-value=0.96  Score=42.90  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      .|.|||+|.-|...|..|+++|++|.+.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            488999999999999999999999999876

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=82.87  E-value=1.2  Score=43.12  Aligned_cols=32  Identities=6%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|-.|..+|.+|++.| +|.+++++.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            46999999999999999999999 999998863

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=82.84  E-value=0.92  Score=52.22  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      .|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            89999999999999999999995 8999999873

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=82.82  E-value=0.85  Score=50.05  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.1

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIG--aGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -+|+|||  +|..|+-+|..|++.|.+|+++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            4599999  99999999999999999999999998876543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=82.66  E-value=0.87  Score=43.93  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|++.|++|.+++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            368999999999999999999999999998 54

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.66  E-value=1.1  Score=43.67  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34579999999999999999999999999999874

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=82.50  E-value=0.96  Score=43.60  Aligned_cols=33  Identities=9%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~   55 (523)
                      ..|.|||+|.-|...|..|+++  |.+|.++|++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999998  68999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=82.02  E-value=1.6  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      --.|.|||+|.-|.-.|..++++|++|+++|.++
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            3579999999999999999999999999999875

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=82.00  E-value=1.1  Score=46.40  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|+|+|..|..+|..|++.|.+|.+++++.
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            468999999999999999999999999998863

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=81.74  E-value=2.5  Score=40.51  Aligned_cols=53  Identities=8%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCceeEEEEecCCCcEEEEEeC---------CC-----cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---------~G-----~~i~A~~VI~~  333 (523)
                      .++.+.+.+.+.. .|.++++++.|++|..+  ++++.+|++.         +|     .+++||.||..
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A  186 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS  186 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence            5677777777665 69999999999999876  6677777753         32     57999999953

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=81.67  E-value=1.1  Score=43.74  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|.+.|..|++.|.  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999998  999999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=81.64  E-value=1.5  Score=44.01  Aligned_cols=53  Identities=15%  Similarity=0.126  Sum_probs=40.8

Q ss_pred             cChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009881          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL  332 (523)
Q Consensus       278 ~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~A~~VI~  332 (523)
                      ..++.+.|.+.+...|.++++++.|++|..++ ++. +.|++ .+|+  +++||.||.
T Consensus       102 ~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~-~~~-~~v~~~~~g~~~~~~a~~vV~  157 (394)
T 1k0i_A          102 QTEVTRDLMEAREACGATTVYQAAEVRLHDLQ-GER-PYVTFERDGERLRLDCDYIAG  157 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCEEEEEECTT-SSS-CEEEEEETTEEEEEECSEEEE
T ss_pred             hHHHHHHHHHHHHhcCCeEEeceeEEEEEEec-CCc-eEEEEecCCcEEEEEeCEEEE
Confidence            35677888888888899999999999997641 222 45666 6887  799999994

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=81.62  E-value=1.3  Score=43.07  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4579999999999999999999999999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=81.60  E-value=1.2  Score=46.36  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..-|+|+|+|-.|..+|.+|++.|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4568999999999999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=81.53  E-value=1.2  Score=47.59  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.++|||.|--|..+|..|.+.|++|+++|++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            5799999999999999999999999999999875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=81.42  E-value=1.2  Score=44.72  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=28.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        17 ~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      .++..++.|+|+|+|..|..+|..|++ .++|.+.+++
T Consensus        11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~   47 (365)
T 3abi_A           11 HIEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVN   47 (365)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESC
T ss_pred             cccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcC
Confidence            455567889999999999999999986 4789988775

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=81.41  E-value=1.7  Score=41.22  Aligned_cols=43  Identities=16%  Similarity=0.052  Sum_probs=30.5

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        13 ~~~~~l~~~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      |..++......-|+|.|+ |--|..+|..|++.|++|.+++++.
T Consensus         7 ~~~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   50 (278)
T 2bgk_A            7 PDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   50 (278)
T ss_dssp             ----CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCh
Confidence            333344444445788875 6789999999999999999998764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=81.17  E-value=1.1  Score=41.59  Aligned_cols=34  Identities=9%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             cccEEEEC-CChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           22 AFDLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIG-aGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ...|+|.| +|.-|..+|..|++.| ++|.++.++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            35699999 6999999999999999 8999999874

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=81.15  E-value=1.5  Score=42.92  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|.|+ |.-|..++..|.+.|++|.+++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            35899997 99999999999999999999998753

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=81.00  E-value=1.4  Score=44.13  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|.|+ |.-|..++..|.+.|++|.++.++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            36899997 99999999999999999999998753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=80.95  E-value=2.3  Score=46.14  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+|||||||||++|+.||++|++.|.+|+++|++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            46999999999999999999999999999999984

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=80.91  E-value=1.5  Score=40.88  Aligned_cols=33  Identities=12%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -|+|.|+ |.-|..+|..|++.|++|.+++++..
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            3788886 89999999999999999999998753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=80.82  E-value=1.5  Score=42.39  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|.|+ |.-|..++..|.+.|++|.++.++..
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            46999998 99999999999999999999998764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=80.70  E-value=1.3  Score=43.67  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|..+|..|++.|.  +|.++|.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            58999999999999999999997  899999976

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=80.56  E-value=1.4  Score=43.64  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ...|.|||+|..|..+|..|+..|.  +|.++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3579999999999999999999998  899999864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=80.52  E-value=1.4  Score=43.26  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|+..|.  +|.++|.+.
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            579999999999999999999886  899999873

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=80.51  E-value=1.3  Score=43.48  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|..|...|..|+..|.  .|.++|.+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999999999  999999986

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=80.50  E-value=1.5  Score=42.91  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|.| +|.-|..++..|.+.|++|.+++++.
T Consensus        22 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4689998 69999999999999999999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=80.49  E-value=1.6  Score=43.52  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           22 AFDLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGa-Gl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ...|.|||+ |..|+++|..|+..|.  +|.++|.+.
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            457999998 9999999999999995  899999853

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=80.46  E-value=2.3  Score=42.54  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|+|.|+ |.-|..++..|.++|++|.++.++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   63 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   63 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3356999998 9999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	2e-67
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	2e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-27
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	3e-21
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-18
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	5e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  223 bits (569), Expect = 2e-67
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRSLFPE----QVTSIRVLQLGGNLAVCP 413
             +V+R  C          SN  V   P S        +       Q+  N   CP
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCP 488

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.1 bits (228), Expect = 2e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (274), Expect = 1e-27
 Identities = 71/319 (22%), Positives = 145/319 (45%), Gaps = 28/319 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSFTVP 339
                 +  ++ DP++  P
Sbjct: 277 KLGTFKAPLVIADPTY-FP 294

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.8 bits (215), Expect = 3e-21
 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
           +++R + IT  S+    ++  V             ++RV++L  +   C  G ++++ + 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63

Query: 424 LCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQ 477
           +       ++ L   +  L            +  ++E+ +  KP LLW+  +  
Sbjct: 64  MSS--KTAREDLERVVQKL--------FTPYTEIEAENEQVEKPRLLWALYFNM 107

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.9 bits (208), Expect = 1e-18
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.95
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.76
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.68
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.58
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.36
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.32
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.32
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.32
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.23
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.15
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.12
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.96
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	98.89
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.84
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.73
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.73
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.69
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.69
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.67
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.64
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.61
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.58
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.54
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.54
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.54
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.49
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.48
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.47
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.46
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.44
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.43
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.41
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.4
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.37
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.37
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.36
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.35
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.34
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.33
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.33
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.33
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.32
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.3
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.29
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.26
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.26
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.2
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.19
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.19
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.15
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.12
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.06
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.05
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.02
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.98
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.85
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.51
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.41
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.4
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.38
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.33
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.31
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.27
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.1
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.09
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.06
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.79
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.74
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.71
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.69
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.57
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.57
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.42
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.26
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.25
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.16
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.09
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.02
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.92
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.86
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.82
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.66
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.64
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.59
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.55
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.48
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.48
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.85
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.23
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.14
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.82
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.52
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.51
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.44
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.23
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.76
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.37
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.96
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.93
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.8
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.74
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.58
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.98
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.65
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.45
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.2
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.15
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.09
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.07
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.03
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.92
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	89.1
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.09
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.97
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.95
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.8
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.78
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.72
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.13
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.11
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.52
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.16
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	87.13
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.81
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.61
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	86.2
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.07
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.02
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.51
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	85.01
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.97
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	84.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.7
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	84.26
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.95
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.47
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	83.27
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	82.98
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.97
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.97
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.73
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.64
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.42
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	81.79
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	81.64
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	80.99
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.85
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	80.14

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-59  Score=485.14  Aligned_cols=352  Identities=34%  Similarity=0.560  Sum_probs=276.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCC---------------
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCP---------------   84 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~---------------   84 (523)
                      |++|||||+||||.++++|++|||+|+||||+|+|+||||.|+||+++++.+|+...+.......               
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            57899999999999999999999999999999999999999999999999999976543211000               


Q ss_pred             ------CCccccceeccc--------------------------------------------------------------
Q 009881           85 ------DPLYSDVEISNY--------------------------------------------------------------   96 (523)
Q Consensus        85 ------~~~~~~~~~~~~--------------------------------------------------------------   96 (523)
                            .....+++..++                                                              
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                  000000000000                                                              


Q ss_pred             -----------------------------------------------cccccccCCCceEEecCCCeEEecChHHHHHHh
Q 009881           97 -----------------------------------------------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (523)
Q Consensus        97 -----------------------------------------------~~~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~  129 (523)
                                                                     ....+.+..|+|+|||. |+++++++.|+++|+
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                           00001123699999997 999999999999999


Q ss_pred             cCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 009881          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (523)
Q Consensus       130 ~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (523)
                      ++++.||+||+.++++|++. +|++++||++++++|+++.+++.+||+||||++++.++.+. +      +.+..+.+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~------~~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-P------DEYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-H------HHHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-c------cccccccCCc
Confidence            99999999999999999886 89999999999999999999999999999999999987532 1      1134456799


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHH
Q 009881          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (523)
Q Consensus       210 ~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~  289 (523)
                      |.+||+++++++++++++.|+|+|...+.      .++.+++.++++|+.|+|+||++  +|+||+||.|||+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~~------~~~~~~l~ri~~yl~Slg~yG~s--pflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCCC------ccHHHHHHHHHHHHHHHHhhCCC--CeEeecCCcchHHHHHHHHH
Confidence            99999999999999999999999864222      46789999999999999999975  49999999999999999999


Q ss_pred             HHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEE
Q 009881          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (523)
Q Consensus       290 a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i  369 (523)
                      |+.||+|+||++|++|.++++++++.+|++++|++++|++||++|+|...+.                    .+++.|. 
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--------------------~~~v~r~-  445 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--------------------CSRVSRD-  445 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--------------------TTTCCGG-
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--------------------cceeeeh-
Confidence            9999999999999999998778889999999999999999999998762221                    2223332 


Q ss_pred             EEecCCCCCCCCceEEEcCCCCCCCCCCce----EEEEEeCCCCCcCCC
Q 009881          370 CITRSSLKPDLSNFLVIFPPRSLFPEQVTS----IRVLQLGGNLAVCPL  414 (523)
Q Consensus       370 ~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~----v~v~~~s~~~~~cP~  414 (523)
                      ++.+.     +++.+|+.||.....++...    +.+.+++++.++||.
T Consensus       446 c~~~~-----~s~~~i~~~p~~~~~~d~~v~~a~~~~~~~~p~~~~cP~  489 (491)
T d1vg0a1         446 CYNDL-----PSNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCPA  489 (491)
T ss_dssp             GSSSC-----CTTEEEECCCCSSSSSHHHHHHHHHHHHHHSTTCCSSCC
T ss_pred             hhcCC-----CceEEEECCCCcCCccchhhhhHhhhhhhcCCCCCcCCC
Confidence            22233     35566666665543321111    122456888899985

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-37  Score=295.65  Aligned_cols=292  Identities=25%  Similarity=0.496  Sum_probs=228.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (523)
                      +.++|||||||||++||+||++|+++|++|+||||++++||+++|++++++..++.....         . ...     .
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~---------~-~~~-----~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI---------S-KEE-----R   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCC---------C-HHH-----H
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCcc---------c-ccc-----c
Confidence            457899999999999999999999999999999999999999999998775544433211         0 000     0


Q ss_pred             cccccCCCceEEecCCCeEEecChHHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHH
Q 009881           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (523)
Q Consensus        99 ~~~~~~~r~f~ldl~GP~ll~~~~~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L  178 (523)
                      .......++|++|+. |++++.++.+.+.+.+.+..++.+|+.+++.+++. ++...++|.++.+++.....+..+++.+
T Consensus        67 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceeccC-cccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            001113467899995 99999999999999999999999999998888764 7889999999999998888888999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhccCCCcchhhhhcchHHHHHHHHHHH
Q 009881          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (523)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~l  258 (523)
                      ++|...+..+......    ..........++.++++++++++.++.++.+.+.+......   ...++...+.++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            9988877665332110    11112344578999999999999999988776544322111   1245666777777777


Q ss_pred             HhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009881          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (523)
Q Consensus       259 ~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~p~~~  337 (523)
                      .+.+.++.+  ++.||+||+++|+++|++.++.+||+|++|++|++|..+++++++++|+ .+|++++||+||++|+|.
T Consensus       218 ~~~~~~~~~--~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSSC--SEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hcccccccC--cceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            777766643  4889999999999999999999999999999999998876567777775 689999999999998876

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.2e-21  Score=161.53  Aligned_cols=109  Identities=17%  Similarity=0.290  Sum_probs=81.1

Q ss_pred             cceEEEEEEEecCCCCCCCC--ceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHHH
Q 009881          362 KGKVARGICITRSSLKPDLS--NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (523)
Q Consensus       362 ~~~v~r~i~i~~~~l~~~~~--~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~  439 (523)
                      +.+|+|+|+|+++|+.+..+  ...+++||...+  ..++||++++|+++++||+|+||+|+||..+  ++++++|++++
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~--~~~~v~vl~~ss~~~vCP~G~yv~~~St~~t--~~~~~~L~~a~   77 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVRVIELCSSTMTCMKGTYLVHLTCMSS--KTAREDLERVV   77 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEEEEEECGGGTSSCTTCEEEEEEEECS--SCHHHHHHHHH
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccC--CCCCEEEEEecCCcccCCCCCEEEEEEEcCC--CCHHHHHHHHH
Confidence            56899999999999976443  234444443322  4689999999999999999999999999653  48999999999


Q ss_pred             HHHHhhhhcCCCCCCCCccccccccCCcceEEEEEEEeecccc
Q 009881          440 SALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLV  482 (523)
Q Consensus       440 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~  482 (523)
                      ++||....        ++..++.++.+|+|||++||+|.++++
T Consensus        78 ~~Ll~~~~--------e~~~~~~~~~kP~iLWslyf~~~d~s~  112 (113)
T d1vg0a2          78 QKLFTPYT--------EIEAENEQVEKPRLLWALYFNMRDSSD  112 (113)
T ss_dssp             HHHCBSCS--------CCC-------CCBEEEEEEEEEEECTT
T ss_pred             HHhhCccc--------cccccccccCCCeEEEEEEEcCCCCCC
Confidence            99997421        222233357799999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=181.47  Aligned_cols=254  Identities=13%  Similarity=0.096  Sum_probs=141.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (523)
                      ||||||||++||+||..|+++|++|+||||++++||+++|+...                                    
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~------------------------------------   44 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ------------------------------------   44 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT------------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC------------------------------------
Confidence            89999999999999999999999999999999999999986532                                    


Q ss_pred             CCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHhcccCChHhHHHHHHHH
Q 009881          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (523)
Q Consensus       104 ~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~~~~ls~~~k~~L~~fl  182 (523)
                        ..+.+|+ |++++.... .+.+++.+.|+..+.. ...... .+..+...........     .............+.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          45 --KVKYVDL-GGSYVGPTQNRILRLAKELGLETYKV-NEVERL-IHHVKGKSYPFRGPFP-----PVWNPITYLDHNNFW  114 (383)
T ss_dssp             --TTSCEES-SCCEECTTCHHHHHHHHHTTCCEEEC-CCSSEE-EEEETTEEEEECSSSC-----CCCSHHHHHHHHHHH
T ss_pred             --CCcEEeC-CceEeCCCChHHHHHHHHcCCcceec-cCccce-EEecCccccccccccc-----chhhhhhhhhHHHHH
Confidence              1233566 578775443 6777777777653321 111111 1111222222111100     001111112222222


Q ss_pred             HHHHhhcccCcc-ccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hccCCCcchhhhhcchHHHHHHHHHHHHh
Q 009881          183 KLVQGHLSLDES-EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (523)
Q Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~efl~~~~l~~~l~~~l~~~i-~l~~~~~~~~~~~~s~~~~l~~~~~~l~s  260 (523)
                      +........... .........+....++.+++++....+....+..... ........    ..+....+.........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            222211111010 0001111234456789999998888776665443211 11111111    12222222222111000


Q ss_pred             hhccc-CCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          261 IGRFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       261 ~g~~g-~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ..... ...+....+.+|++.++++++   +..|+.+++|++|++|..+  +++ +.|++.+|++++||+||+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a  258 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISA  258 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEEC
Confidence            00000 111224578899999998664   5689999999999999775  444 4688999999999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.76  E-value=6.4e-18  Score=164.22  Aligned_cols=45  Identities=16%  Similarity=0.378  Sum_probs=42.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~   67 (523)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   45 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA   45 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeC
Confidence            489999999999999999999999999999999999999997653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.68  E-value=5.3e-16  Score=153.12  Aligned_cols=244  Identities=11%  Similarity=0.086  Sum_probs=126.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceeccccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (523)
                      .+|||||||++||+||.+|+++|++|+|||+++++||++.|+..+.                                  
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~----------------------------------   76 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE----------------------------------   76 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC----------------------------------
Confidence            5899999999999999999999999999999999999999875421                                  


Q ss_pred             cCCCceEEecCCCeEEecCh-HHHHHHhcCCcccccccccc-cceeeeccCCceeecCCCHHHHH-hcccCCh-----Hh
Q 009881          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIF-KDKSLGL-----ME  174 (523)
Q Consensus       103 ~~~r~f~ldl~GP~ll~~~~-~lv~lL~~~~~~~ylef~~~-~~~~~~~~dg~~~~vP~s~~~if-~~~~ls~-----~~  174 (523)
                         ..+.+|. |+.++.... .+.+++.+.+.... ++... ...+++. ++............. ....+..     ..
T Consensus        77 ---~g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (370)
T d2iida1          77 ---AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKSA  150 (370)
T ss_dssp             ---TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCCH
T ss_pred             ---CCceecc-CceeecCccHHHHHHHHHhCCccc-eeeccCCceEEec-CCccccchhhhhhhhhhhhhhhhhhhhhhh
Confidence               3455666 466654444 45555655554321 22111 1112221 222211110000000 0000000     00


Q ss_pred             HHH----HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhccCCCcchhhhhcchHH
Q 009881          175 KNQ----LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (523)
Q Consensus       175 k~~----L~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~efl~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~  249 (523)
                      ...    +.+....+....        ...........+..+++.. ..........+.......  . .   ...+.. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~-  215 (370)
T d2iida1         151 GQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED--S-G---YYVSFI-  215 (370)
T ss_dssp             HHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCG--G-G---TTSBHH-
T ss_pred             HHHHHHHHHHHHHHHHhhh--------hhhhhhhccchhHHHHHHHhccccHHHHHHhhcccccc--c-h---hhhHHH-
Confidence            111    111111111110        0001122344567777765 344444444332211110  0 0   001111 


Q ss_pred             HHHHHHHHHHhhhcccCCCccEEeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcE-EEEEe--CCCcEEE
Q 009881          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY-KGVRL--ASGQDIL  326 (523)
Q Consensus       250 ~l~~~~~~l~s~g~~g~~~~~~~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~-~gV~l--~~G~~i~  326 (523)
                        ... ....... ..   ..+.++.+|+..|+++|.   +..|+.++++++|++|..+  ++++ +.+..  .+++++.
T Consensus       216 --~~~-~~~~~~~-~~---~~~~~~~~~~~~l~~~l~---~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~~  283 (370)
T d2iida1         216 --ESL-KHDDIFA-YE---KRFDEIVDGMDKLPTAMY---RDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSVT  283 (370)
T ss_dssp             --HHH-HHHHHHT-TC---CCEEEETTCTTHHHHHHH---HHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEEE
T ss_pred             --hhh-hhhhhhc-cc---cccccchhhHHHHHHHHH---HhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEEE
Confidence              111 1111111 11   226789999999999775   4679999999999999886  4443 23333  3456899


Q ss_pred             cCEEEEC
Q 009881          327 SHKLVLD  333 (523)
Q Consensus       327 A~~VI~~  333 (523)
                      ||+||+.
T Consensus       284 aD~VI~A  290 (370)
T d2iida1         284 ADYVIVC  290 (370)
T ss_dssp             ESEEEEC
T ss_pred             eeEEEec
Confidence            9999975

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.58  E-value=1.1e-14  Score=140.86  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~   67 (523)
                      +|||||||++||+||+.|+++|++|+|||+++++||+++|+..+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~   46 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD   46 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccC
Confidence            69999999999999999999999999999999999999987643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.36  E-value=3.5e-13  Score=127.06  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIA   67 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~   67 (523)
                      .||||||||++||+||..|+++|+ +|+||||++++||+++|+..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~   46 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA   46 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccC
Confidence            389999999999999999999996 699999999999999997654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.34  E-value=7.3e-13  Score=130.90  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=72.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      ...|+|||||++||+||..|+++|++|+|+|+++++||++.|+...+                                 
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~---------------------------------   48 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE---------------------------------   48 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT---------------------------------
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC---------------------------------
Confidence            35799999999999999999999999999999999999998865321                                 


Q ss_pred             ccCCCceEEecCCCeEEecChHH-HHHHhcCCcccccccccccceeeeccCCceeecCCCHHHHHh
Q 009881          102 SQHPRNFNLDVSGPRVLFCADHA-VDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK  166 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~~~l-v~lL~~~~~~~ylef~~~~~~~~~~~dg~~~~vP~s~~~if~  166 (523)
                         ...+..|. ||++++...+. .+.+.+     +.+|...........+|+.+++|.....+..
T Consensus        49 ---~g~~~~~~-Gphif~t~~~~v~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~P~~~~~i~~  105 (314)
T d2bi7a1          49 ---TNVMVHVY-GPHIFHTDNETVWNYVNK-----HAEMMPYVNRVKATVNGQVFSLPINLHTINQ  105 (314)
T ss_dssp             ---TCCEEETT-SCCCEEESCHHHHHHHHT-----TSCEEECCCCEEEEETTEEEEESCCHHHHHH
T ss_pred             ---CCceEEec-CceeecCccHHHHHHHHH-----hhhhhhhccccceeecceeeccCccHHHHHH
Confidence               11233445 68888776643 344432     3344443332222237899999988765543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.4e-13  Score=129.58  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=42.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~   67 (523)
                      +.+|||||||++||+||+.|+++|++|+|||+++++||+++|++.+
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~   50 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG   50 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeC
Confidence            4679999999999999999999999999999999999999997643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.9e-12  Score=126.93  Aligned_cols=99  Identities=18%  Similarity=0.344  Sum_probs=70.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccccccchhhhhccCCCCCCCCCCCccccceecccccccc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (523)
                      .+||||||||++||+||..|++.|++|+|+|+++++||++.|+...|                                 
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g---------------------------------   47 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCC---------------------------------
Confidence            48999999999999999999999999999999999999999865433                                 


Q ss_pred             ccCCCceEEecCCCeEEecChHHH-HHHhcCCcccccccccccce-eeeccCCceeecCCCHHHHH
Q 009881          102 SQHPRNFNLDVSGPRVLFCADHAV-DLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIF  165 (523)
Q Consensus       102 ~~~~r~f~ldl~GP~ll~~~~~lv-~lL~~~~~~~ylef~~~~~~-~~~~~dg~~~~vP~s~~~if  165 (523)
                            +.++-.||++++..++-+ +.+.+     +.+|...... ... .+|+.+.+|....++.
T Consensus        48 ------~~~~~~G~h~f~t~~~~v~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~P~~~~~i~  101 (298)
T d1i8ta1          48 ------IQIHKYGAHIFHTNDKYIWDYVND-----LVEFNRFTNSPLAI-YKDKLFNLPFNMNTFH  101 (298)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHT-----TSCBCCCCCCCEEE-ETTEEEESSBSHHHHH
T ss_pred             ------EEEeecCcEEEEecchHHHHHhhc-----cccceeecccccee-eeceeEEecccHHHHH
Confidence                  222222688887766443 43332     2333332222 222 3789999998765543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.32  E-value=6.5e-12  Score=119.04  Aligned_cols=67  Identities=21%  Similarity=0.333  Sum_probs=54.4

Q ss_pred             EeecCCc-ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 009881          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (523)
Q Consensus       272 ~~p~gG~-~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~~~~  340 (523)
                      .+|.... ..+.++|.+.++..|.+++++++|+.|..+  ++++.+|.+++|++++||+||+ +....+|.
T Consensus       102 ~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         102 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence            4665553 578899999999999999999999999887  7788889999999999999985 34333343

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.31  E-value=1.9e-12  Score=125.08  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.4

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .+.|..|.   ..+.+++.+.++..|++++.+++|++|..+  +++ +.|++.+| +|+||+||+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VViA  200 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEEC
Confidence            44566664   578899999999999999999999999886  555 57887666 6999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.23  E-value=1.6e-10  Score=112.64  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++|..|.   ..+.+++.+.+...|++++.+++|++|..+  ++++++|++.+| +|+||+||+.
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~a  199 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  199 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEEe
Confidence            44566664   478899999999999999999999999987  788899997655 7999999963

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=5e-11  Score=113.50  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             EeecCCcChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 009881          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS  341 (523)
Q Consensus       272 ~~p~gG~~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~-~p~~~~~~l  341 (523)
                      .+|.....++.+.|.+.++..|.+++++++|++|...+++..+..+...++++++||+||+ +....+|.+
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGG
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccccc
Confidence            4566667789999999999999999999999999876433333334456889999999985 333334443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.12  E-value=1.6e-09  Score=105.65  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ..+|||||||+|++||+||+.|+++|++|+||||++..||...
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4579999999999999999999999999999999999988643

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.96  E-value=5.2e-09  Score=102.62  Aligned_cols=60  Identities=22%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009881          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (523)
Q Consensus       272 ~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~A~~VI~  332 (523)
                      .+|.+|.   .+|.++|.+.++..|++++++++|.++.+++ +++++||...  +++  .|+||.||+
T Consensus       138 ~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~Ak~VVl  204 (317)
T d1qo8a2         138 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVL  204 (317)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cccccccccchhhhHHHHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEeccceEE
Confidence            3455553   3799999999999999999999999998863 7888888753  443  478999885

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=2.2e-09  Score=83.03  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=68.0

Q ss_pred             cceEEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHHH
Q 009881          362 KGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (523)
Q Consensus       362 ~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~  439 (523)
                      .|++.|+|||.++|++..  .++.++++|..+++  -.+.+|+...|+....||+|+|+..+||..++ ++++.+|++++
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiaiVST~vET-~nPe~El~pgl   79 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGKYIAIASTTVET-TDPEKEVEPAL   79 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHHH
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhc--cCCCEEEEEeccccccCCCCeEEEEEEEEEec-CCcHHHHHHHH
Confidence            478999999999998753  35679999977765  36789999999999999999999999998876 58999999999


Q ss_pred             HHH
Q 009881          440 SAL  442 (523)
Q Consensus       440 ~~l  442 (523)
                      +.|
T Consensus        80 ~lL   82 (97)
T d1d5ta2          80 GLL   82 (97)
T ss_dssp             TTT
T ss_pred             Hhh
Confidence            877

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=4.4e-09  Score=81.34  Aligned_cols=79  Identities=23%  Similarity=0.399  Sum_probs=67.4

Q ss_pred             cce-EEEEEEEecCCCCCC--CCceEEEcCCCCCCCCCCceEEEEEeCCCCCcCCCCcEEEEEEEeeccccchHHHHHHH
Q 009881          362 KGK-VARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA  438 (523)
Q Consensus       362 ~~~-v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~s~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~  438 (523)
                      .|+ +.|+|||.++|++..  .++.++++|..+++  -.+.+|+...|+....||+|+|+..+||..++ ++++..|+++
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiAiVST~vET-~nPe~El~pg   79 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGHYLAIISTIIET-DKPHIELEPA   79 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHH
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhC--CCcCEEEEEeccccccCCCCcEEEEEEEEeec-CCcHHHHHHH
Confidence            354 999999999998753  35679999977765  36789999999999999999999999998875 4899999999


Q ss_pred             HHHHH
Q 009881          439 LSALQ  443 (523)
Q Consensus       439 ~~~l~  443 (523)
                      ++.|=
T Consensus        80 l~lLG   84 (98)
T d2bcgg3          80 FKLLG   84 (98)
T ss_dssp             HGGGC
T ss_pred             HHhhc
Confidence            98764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.4e-09  Score=101.26  Aligned_cols=43  Identities=19%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|++||.+|++.|++|+++|+++.+||.+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            5799999999999999999999999999999999999997754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.73  E-value=3e-09  Score=98.21  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .+|||||||+|.+|+.||.+++|.|++|+++|+++.+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~   44 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   44 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence            4699999999999999999999999999999999999997754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.69  E-value=5e-09  Score=99.97  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             EEeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       271 ~~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .+.|..|.   ..+.++|.+.+...|++|+.+++|++|..+   ++.++|++.+| +|+||+||+.
T Consensus       140 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         140 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            44566664   478899999999999999999999999753   44578987665 7999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=5.2e-09  Score=100.62  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~-~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||||||||++||+||+.|++ .|++|+++|+++.+||.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            47999999999999999999987 59999999999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.67  E-value=4e-09  Score=98.34  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      ...+|||||||+|.+||+||.+|+|.|++|+++|+++.+||.+..
T Consensus         3 ~~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            346799999999999999999999999999999999999996543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.64  E-value=7e-09  Score=100.89  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +.++||||||||++||++|..|.++|.+|+|+||++.+||.|..
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~   48 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   48 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccccc
Confidence            36799999999999999999999999999999999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.7e-08  Score=90.28  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +..+|+|||||.+||.||..|++.|++|+++|+++.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            457899999999999999999999999999999999999765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.61  E-value=1.1e-08  Score=94.48  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+|||||||+|.+||+||.+|+|.|++|+++|+....||...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            579999999999999999999999999999999888777643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=1.5e-08  Score=101.94  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCeEEEeccCCCCCCCccc
Q 009881           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~------~G~~VlvlE~n~~~GG~~~s   63 (523)
                      +|||||||||.+||+||+.|+|      +|++|+||||+.++|.+..+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999998      89999999999999887644

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.1e-08  Score=94.29  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            3699999999999999999999999999999995 6899663

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.54  E-value=3.3e-08  Score=92.66  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      +.++.+|||||+|++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            446679999999999999999999999999999998754443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.54  E-value=2.3e-08  Score=97.90  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +.++||||||+|++||+||+.|+++|++|++|||++..||...
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            3468999999999999999999999999999999999998643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.54  E-value=2.5e-08  Score=98.96  Aligned_cols=42  Identities=14%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +.+|||||||+|.+|+++|.+|+++|+||+|||+....++..
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            468999999999999999999999999999999966555443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=4.3e-08  Score=91.18  Aligned_cols=39  Identities=31%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -+|||||||+|.+|++||.+++|.|++|+++|+++..|.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            369999999999999999999999999999999877553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.48  E-value=6.5e-08  Score=90.23  Aligned_cols=47  Identities=19%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      ...+..+|+|||+|.+||++|..|++.|++|+++|+++.+||.+...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            34567899999999999999999999999999999999999988653

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=3.7e-08  Score=95.70  Aligned_cols=43  Identities=16%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      |.+.++||||||+|++||+||+.+++.| +|+||||.+..||..
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            5567899999999999999999999988 999999999888864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.46  E-value=3.4e-08  Score=96.96  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCcE--EEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~~--i~A~~VI~  332 (523)
                      ..+.+++.+.+...|.+++.+++|.+++.+  +++++++..   .+|+.  |+|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            478899999999999999999999999887  788877654   46764  78999985

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=5.7e-08  Score=86.66  Aligned_cols=39  Identities=13%  Similarity=0.395  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s   63 (523)
                      |||||||+|.+|+.||.+++|.|++|+++|++  +||.+..
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            89999999999999999999999999999975  7887653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.43  E-value=7e-08  Score=91.59  Aligned_cols=47  Identities=32%  Similarity=0.421  Sum_probs=42.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      ...++.+|||||||+|.+|+.+|..|++.|.+|+++|+++.+||.|-
T Consensus        36 ~~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          36 DENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CTTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            34456789999999999999999999999999999999999999763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.41  E-value=1.1e-07  Score=89.47  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      |+..+|+|||||++||++|..|+++|++|+|+||++.++..
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~   42 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSG   42 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            56678999999999999999999999999999999876543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.5e-08  Score=89.49  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .+|||||||+|.+|+.||.+++|.|++|+++|+ +.+||.+
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            369999999999999999999999999999998 4667654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5.7e-08  Score=95.57  Aligned_cols=44  Identities=27%  Similarity=0.250  Sum_probs=39.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      +...+|||||||+|++||.||+.++++|++|+++||.+..||..
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            34468999999999999999999999999999999999888753

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.37  E-value=7.5e-08  Score=88.46  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      +|||||||+|.+|++||.+++|.|++|+++|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            5899999999999999999999999999999964 677543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.3e-07  Score=87.54  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n-~~~GG   59 (523)
                      .|||||||||++|+.||+++||.|.+|++++++ +.+|+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~   40 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM   40 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcc
Confidence            599999999999999999999999999999988 34443

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.35  E-value=1.3e-07  Score=94.23  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +..++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            446799999999999999999999999999999984

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=1.6e-07  Score=88.94  Aligned_cols=44  Identities=18%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCcccccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSI   66 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~   66 (523)
                      +||+|||||++||++|+.|+++|. +|+|+||++.++...+...+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l   46 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINI   46 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEE
Confidence            699999999999999999999995 99999999988766555443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=7.4e-08  Score=89.43  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-------~~VlvlE~n~~~GG~~~s   63 (523)
                      +.|+|||+|.+||+||..|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999998       589999999999998754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.33  E-value=1.1e-07  Score=90.11  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      |||||||+|.+|+.||.++++.|++|+++|++ .+||.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 5898764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.33  E-value=2.1e-07  Score=91.50  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCcccc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~GG~~~s~   64 (523)
                      +....|+|||||++||++|..|+++|  .+|+|+||++.+||.|..-
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~   48 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   48 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccccc
Confidence            34457999999999999999998877  5999999999999998653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.4e-07  Score=91.76  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~--~G~~VlvlE~n~~~GG~~~s   63 (523)
                      .++||+|||+|++||+||..|++  .|++|+++|+++++||.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            36899999999999999999996  49999999999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.30  E-value=1.6e-07  Score=84.34  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=38.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCcccc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~-VlvlE~n~~~GG~~~s~   64 (523)
                      -.|+|||||.+||.||..|+|.|++ |+|+||+++.||.++..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            4799999999999999999999985 99999999999977654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.29  E-value=1.2e-07  Score=87.43  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      .++|+||||+|.+|+.||..+++.|++|+++|++ .+||.|.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            3699999999999999999999999999999986 5788654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.26  E-value=2.3e-07  Score=92.37  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            5799999999999999999999999999999995

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.26  E-value=3e-07  Score=90.73  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCCCcc
Q 009881           22 AFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~~GG~~~   62 (523)
                      ++||||||+|++||+||+.|++    +|++|+||||....||...
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            6899999999999999999975    7999999999998877654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.23  E-value=3.2e-07  Score=91.04  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      .||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            69999999999999999999999999999994

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=2.9e-07  Score=85.22  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=37.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009881           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~~s   63 (523)
                      ..|+|||+|.+||+||..|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4799999999999999999886  7799999999999997654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=3.3e-07  Score=82.34  Aligned_cols=44  Identities=11%  Similarity=0.109  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      .+.||+|||+|.+||.||.+|+|.|.+|+++|+++.-|....+-
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc
Confidence            35799999999999999999999999999999987755555543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.19  E-value=5e-07  Score=88.46  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCeEEEeccCCCCC--CCcccc
Q 009881           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFYG--SHFSSL   64 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La-----~~G~~VlvlE~n~~~G--G~~~s~   64 (523)
                      ..|||+|||||++||++|..|+     ++|.+|+|+||++.+.  |+.-++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l   56 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL   56 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEE
Confidence            4699999999999999999996     6899999999997653  444443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.19  E-value=3.1e-07  Score=85.58  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS   59 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~~GG   59 (523)
                      .+|||||||+|.+|++||.++++.| ++|+|+|++...|+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~   41 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGP   41 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCc
Confidence            5799999999999999999999998 57999999876443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=5.1e-07  Score=86.37  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .||+|||||++||++|.+|++.|++|+|+||++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            599999999999999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.12  E-value=6.4e-07  Score=82.77  Aligned_cols=36  Identities=31%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      ..|||||||+|.+|++||.+++|.|. +|+++|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            46999999999999999999999885 6899988643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.06  E-value=8.9e-07  Score=79.66  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=34.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      ..++||+|||+|.+|+.||..|+|.|.+|+++|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            34689999999999999999999999999999987764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.05  E-value=1.3e-06  Score=87.59  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      ...+||+||||+|.+|+++|.+|+++| ++|||||+..+
T Consensus        14 ~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          14 SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             cCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            345699999999999999999999987 79999999643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.02  E-value=1.6e-06  Score=87.01  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      ..+.||+||||+|.+|+++|.+|+++| ++|+|||+..+
T Consensus        21 ~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            345799999999999999999999998 69999999754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.5e-06  Score=84.39  Aligned_cols=41  Identities=20%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009881           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~--G~~VlvlE~n~~~GG~~   61 (523)
                      .++||||||+|++||.||+.++++  |.+|+++||....||..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            368999999999999999999987  67999999998887763

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.85  E-value=3.4e-06  Score=83.27  Aligned_cols=34  Identities=24%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .||+||||+|.+|+++|.+||++ ++|+|||+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            59999999999999999999987 99999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.57  E-value=3.4e-06  Score=77.71  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      .|+|||||+.||++|+.|+++|++|+++|+.+.++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            59999999999999999999999999999866554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=6.3e-05  Score=61.50  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||||..|+-+|..|++.|.+|+++|+++++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=2e-05  Score=72.67  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G---~~VlvlE~n~~~GG~~~   62 (523)
                      -+|||||+|.+|++||.++++.|   ++|+++|+ +.+||.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            37999999999999999887765   67999998 56888554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.41  E-value=7.6e-05  Score=61.49  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ..++|||+|+.|+-+|..|++.|++|+++|+++++.++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            579999999999999999999999999999999986544

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.40  E-value=9.4e-05  Score=61.07  Aligned_cols=40  Identities=23%  Similarity=0.213  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      .-.|+|||+|+.|+-+|..|++.|++|+++|+.+++-++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            3589999999999999999999999999999999875543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=6.6e-05  Score=61.92  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .+++|||||+.|+-+|..|++.|++|+++|+++++.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            4699999999999999999999999999999998854

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.36  E-value=9.4e-05  Score=61.98  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      ..|+|||+|+.|+-+|..|++.|++|+++|+++++..+.
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~   74 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV   74 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc
Confidence            579999999999999999999999999999999986654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.33  E-value=0.00012  Score=59.60  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            37999999999999999999999999999999998643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00015  Score=59.13  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.++....
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.27  E-value=0.00012  Score=59.87  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            469999999999999999999999999999999884

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00029  Score=58.16  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999998753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.09  E-value=0.00031  Score=57.47  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            57999999999999999999999999999999997543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.06  E-value=0.00017  Score=62.57  Aligned_cols=40  Identities=20%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCCCCccc
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~GG~~~s   63 (523)
                      .|||||+|.+|+.+|..|++.|.  +|+++|+++++.+....
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            69999999999999999999985  79999999987665443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00045  Score=56.70  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -.++|||||..|+-.|..|++.|.+|+++|+++++....
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~   62 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM   62 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhh
Confidence            479999999999999999999999999999999986543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.79  E-value=0.00052  Score=56.40  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      -.++|||+|..|+=.|..|++.|.+|+++|+++++-..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            47999999999999999999999999999999988543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00047  Score=62.30  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFY   57 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~~~   57 (523)
                      .|+++++||||+|++|+.+|..|++.|+  +|+++++.+++
T Consensus         1 ~p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           1 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            3678999999999999999999998886  59999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.71  E-value=0.00055  Score=59.35  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|||+|..|..+|..|+++|++|+|+|++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4689999999999999999999999999999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.00062  Score=59.28  Aligned_cols=40  Identities=18%  Similarity=0.057  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~   62 (523)
                      -||||||+|..|+-+|..|++.|++|++++..+.......
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            4899999999999999999999999999998887654443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.69  E-value=0.00083  Score=54.68  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      -.|+|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.66  E-value=0.0011  Score=54.56  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~   61 (523)
                      -.++|||+|+.|+=.|..|++.|.+|+++|+.+++....
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            479999999999999999999999999999999887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.57  E-value=0.0015  Score=53.42  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~   57 (523)
                      .++|||+|..|+=.|..|++.|.+|++++++...
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            6999999999999999999999999999976544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00083  Score=52.17  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ..|+|+|.|.+|+++|.+|++.|.+|.+.|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4689999999999999999999999999998765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.0012  Score=56.51  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      .|||||+|.+|+-+|..|++ |.+|+++|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            48999999999999999976 77999999987653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.26  E-value=0.0016  Score=56.60  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+.|||+|..|+..|+.|+++|++|.++|+++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999975

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.25  E-value=0.0015  Score=57.86  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~~~   57 (523)
                      .|+|||||.+|+.+|..|++.+  .+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5999999999999999999974  579999998876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.25  E-value=0.0072  Score=49.93  Aligned_cols=54  Identities=7%  Similarity=0.038  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+..+..|.++++++.|++|....+++++..|.+++|+++.||.||+.
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a  131 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG  131 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEEC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEe
Confidence            677777788899999999999999998765466777899999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0023  Score=54.71  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||+|--|...|..|+++|++|++++|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999999764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.09  E-value=0.008  Score=48.35  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|++|.... +++ ..|.+++|+++.||.||..
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~-~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNA-DGS-KSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCe-EEEEECCCcEEEeCEEEEe
Confidence            5788999999999999999999999997652 444 4688999999999999853

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.02  E-value=0.0033  Score=50.76  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La---~~G~~VlvlE~n~~~G   58 (523)
                      -.++|||+|+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999996554   5567899999998874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.0029  Score=56.44  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||.|..|+.+|+.||++|++|..+|.|.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999874

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.86  E-value=0.0015  Score=56.96  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .|||||+|.+|+-+|..|++.|.+|.+++..+....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~   40 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   40 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc
Confidence            599999999999999999999999888887766543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.82  E-value=0.0041  Score=52.73  Aligned_cols=42  Identities=10%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             ccEEEE--CCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009881           23 FDLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (523)
Q Consensus        23 ~DVIII--GaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~   64 (523)
                      -.|||+  |+|..|+-+|..|++.|++|+++|+.++++-..-..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~   83 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL   83 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence            455665  999999999999999999999999999886554433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0041  Score=51.72  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCCCc
Q 009881           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHF   61 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~----~G~~VlvlE~n~~~GG~~   61 (523)
                      ..++|||+|+.|+-+|..|++    .|.+|+++|+++++.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            369999999999999998864    599999999999987654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0042  Score=54.92  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|.|||+|.-|...|..++++|++|.++|+++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            469999999999999999999999999999875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.66  E-value=0.0056  Score=49.27  Aligned_cols=37  Identities=14%  Similarity=0.031  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHH---hhCCCeEEEeccCCCCCC
Q 009881           23 FDLIVIGTGLPESVISAAA---SASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~L---a~~G~~VlvlE~n~~~GG   59 (523)
                      -.++|||+|+.|+-+|..|   ++.|.+|.++|+.+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            4799999999999999754   455999999999988754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.64  E-value=0.015  Score=46.51  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|-++++++.|++|..+. ++. ..|.+++|+++.||.||+.
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~-~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGT-RHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCE-EEEEECCCCEEEcCEEEEe
Confidence            4788999999999999999999999998652 443 5788899999999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.64  E-value=0.0075  Score=55.57  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      .++|||||||||++||++|+.|+++|++|+||||++..+|
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~g   41 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   41 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            4579999999999999999999999999999999764443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.59  E-value=0.0054  Score=50.50  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|||+|+|--|..+|..|.+.|++|+++|++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            58999999999999999999999999999974

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.58  E-value=0.0038  Score=54.92  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..++++|++|.++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999975

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.017  Score=46.32  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|++|..++ ++. +.|++++|+++.+|.||+.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~D~vi~a  114 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGS-LTLELEDGRSETVDCLIWA  114 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcE-EEEEECCCCEEEcCEEEEe
Confidence            4788999999999999999999999998652 443 5688899999999999863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.48  E-value=0.007  Score=51.42  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        16 ~~l~~~~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      |+++..+..|.|||+|-.|.++|..|+..|. ++.++|.++
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            6788889999999999999999999999986 799999876

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.021  Score=47.15  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      ++.+.+.+.++..|.++++|+.|++|..+  +++ +.|++++|++|.||.||..
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEe
Confidence            57777778889999999999999999776  444 4688999999999999964

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.39  E-value=0.0096  Score=50.09  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             CCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           17 PIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        17 ~l~~~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ++++..-.|.||| .|.-|...|..|+++|++|.++|++.
T Consensus         4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           4 TINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             ccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4556667899999 79999999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.23  E-value=0.008  Score=51.34  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|||+|.-|...|..|+++|++|.++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48899999999999999999999999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.85  E-value=0.012  Score=50.33  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|.+|+.|+..+.+-|-+|.++|.+.
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            579999999999999999999999999999863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.85  E-value=0.0097  Score=48.81  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+||||.|-.|..+|..|.+.|++|+++|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            57999999999999999999999999999974

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.70  E-value=0.018  Score=48.60  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      -+|||||+|-+++=+|..|.|.| ++|.++.+++.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            46999999999999999999998 56889988765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.60  E-value=0.016  Score=50.32  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -.|+|||+|.+|+.||....+-|-+|.++|.+.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            589999999999999999999999999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.059  Score=43.32  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~A~~VI~  332 (523)
                      .++.+.+.+..+..|.++++++.|+++..++ ++..+.+++.++     +++.||.||+
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRND-DKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeC-CCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            5899999999999999999999999998873 565566665543     3789999885

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.14  E-value=0.071  Score=42.53  Aligned_cols=52  Identities=8%  Similarity=0.042  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE-cCEEEE
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVL  332 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~-A~~VI~  332 (523)
                      .++.+.+.+..+..|..+++++.|++|.... ++. +.|++++|+++. +|.||.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~~v~~~~G~~~~~~D~Vi~  115 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIY  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCe-EEEEECCCCEEEeCCEEEE
Confidence            5888999999999999999999999997652 443 578899999885 699885

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.82  E-value=0.02  Score=50.19  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...|.|||+|--|++.|..|+++|++|.++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3479999999999999999999999999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.52  E-value=0.028  Score=49.25  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|.|||.|..||.+|+.|+ .|++|+.+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            5899999999999999887 4999999998854

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.51  E-value=0.029  Score=46.89  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G--~~VlvlE~n~   55 (523)
                      +.+..|.|||+|.-|.++|..|+..|  .++.++|.++
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            45679999999999999999999998  4899999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.44  E-value=0.031  Score=47.99  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIII-GaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|.|| |+|--|...|..|+++|++|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47888 789999999999999999999999864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.23  E-value=0.036  Score=47.03  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      .|-|||.|.-|+..|..|+++|++|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4889999999999999999999999999986

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.19  E-value=0.033  Score=43.81  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..+|+|||+|.+|.-.|..|++.+++|.++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4689999999999999999999999988777654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.09  E-value=0.13  Score=40.62  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEe-CCC--cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l-~~G--~~i~A~~VI~~  333 (523)
                      .++++.+.+..+..|.++++++.|++|..+  ++.. .|.+ .+|  +++.||.||+.
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEEC
Confidence            478899999999999999999999999876  3332 3333 455  46899999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.76  E-value=0.038  Score=47.76  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      +.|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3689999999999999999999999999854

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.58  E-value=0.057  Score=46.33  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      -+|-|||-|.-|...|..|.++|++|.++|++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            478999999999999999999999999999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.37  E-value=0.057  Score=45.59  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|-|||.|.-|...|..|+++|++|.++|++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            48899999999999999999999999999863

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.96  E-value=0.2  Score=39.72  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC---cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G---~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|-++++++.|++|..+  ++. +.|++.++   +++.||.||+.
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlvA  117 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIVA  117 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEEe
Confidence            589999999999999999999999999876  333 34444333   57899999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.93  E-value=0.0049  Score=55.93  Aligned_cols=37  Identities=0%  Similarity=-0.050  Sum_probs=34.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~G   58 (523)
                      ...|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            3578999999999999999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.80  E-value=0.13  Score=41.25  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++++.+.+..+..|.++++++.|++|..   +++...| +++|+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEEE
Confidence            46788888888899999999999999863   4454455 579999999999863

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.79  E-value=0.078  Score=45.41  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      .+|-|||.|.-|...|..|.++|++|.++|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            46889999999999999999999999999985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.74  E-value=0.15  Score=40.83  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|-.+++|+.|++|..++ ++..+.+...+ |  +++.||.|++.
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            5888999999999999999999999998652 45444555543 3  35899998864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.74  E-value=0.079  Score=41.82  Aligned_cols=37  Identities=11%  Similarity=0.054  Sum_probs=32.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      ++-....|+|||+|-.|..-|..|.+.|-+|+|+...
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3556678999999999999999999999999999764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.58  E-value=0.17  Score=40.38  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|+++.    ++   .|.++||+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEEe
Confidence            4777888888899999999999999873    34   366899999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.15  E-value=0.077  Score=44.94  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.12  Score=41.64  Aligned_cols=38  Identities=16%  Similarity=0.077  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..+|+|||+|-+.+-.|..|++-+++|.++-|++..-+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~   64 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA   64 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc
Confidence            46999999999999999999999999999999886533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.97  E-value=0.1  Score=44.18  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .+.|||.|+-|.+.|..|.++|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            48999999999999999999996  678889864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.92  E-value=0.16  Score=42.78  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .++...|.|||+|..|.++|+.|...|.  ++.++|.++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3455689999999999999999999987  799999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.65  E-value=0.2  Score=42.19  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ....|.|||+|..|.++|+.|...|.  ++.++|.+.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35699999999999999999999998  899999873

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.45  E-value=0.14  Score=47.98  Aligned_cols=61  Identities=25%  Similarity=0.305  Sum_probs=47.0

Q ss_pred             EeecCCc---ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEC
Q 009881          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVLD  333 (523)
Q Consensus       272 ~~p~gG~---~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~A~~VI~~  333 (523)
                      .++..+.   ..+.+.+.+.+...|.+|+++++|.+++.++ +|+++||...  +++  +|+||.||+.
T Consensus       142 ~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~Ak~VIlA  209 (322)
T d1d4ca2         142 HRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADAVVIA  209 (322)
T ss_dssp             EESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEECSEEEEC
T ss_pred             cccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeCCeEEEc
Confidence            3454442   4788999999999999999999999998863 7788888753  232  4899999953

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.36  E-value=0.13  Score=42.72  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .....|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            345689999999999999999999986  799999764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.14  Score=41.25  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG   59 (523)
                      ..+|+|||+|-+.+-.|..|++-.++|.++-+++..-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            47999999999999999999999999999999887643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=0.089  Score=43.75  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009881           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (523)
Q Consensus        20 ~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (523)
                      .....|+|||||-.|+.-|..|.++|-+|+|+..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            4556899999999999999999999999999954

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.11  Score=44.09  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      .|+|+|+|..|+.++..+...|. +|.+.|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            58999999999999999999998 799999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.07  E-value=0.14  Score=42.53  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|-|||.|..|...|..|+++|++|.+.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            578999999999999999999999999987543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.03  E-value=0.28  Score=38.68  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEE---eCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~---l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|-.+++++.|++|..++ +++...+.   ..+++++.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEecC-CceEEEEEEEeCCCCEEEEcCEEEEE
Confidence            4778888888899999999999999998763 56554443   345677999999864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.92  E-value=0.2  Score=40.61  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~~GG~   60 (523)
                      ...||+|||+|-+..-.|..|++--.+|.++-|++.+.+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~   72 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS   72 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc
Confidence            3579999999999999999999999999999999987553

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.23  Score=42.10  Aligned_cols=35  Identities=11%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ...+|+|+|+|=++-+++++|.+.|.+|.++.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            45689999999999999999999999999998753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.13  Score=43.00  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeE
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSV   48 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~V   48 (523)
                      ..|||||+|..|+-+|..|+|.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            58999999999999999999999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.97  E-value=0.15  Score=42.85  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            58999999999999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=0.29  Score=38.41  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=33.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        18 l~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      +.+....|-|+|+|=-|-..|.+..+-|++|.++|.++.
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            444556899999999999999999999999999998753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.19  Score=43.70  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|+|+| +|..|..++..|.++|++|..+.|+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            345699999 69999999999999999999998863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.2  Score=41.49  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+||+|.|-.|..+|..|.+.|++|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            48999999999999999999999999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.72  E-value=0.18  Score=41.49  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|-.|.++|..|+..|. +++++|.++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            368999999999999999999986 899999765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.71  E-value=0.17  Score=42.74  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            588999999999999888888999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.54  E-value=0.33  Score=38.85  Aligned_cols=54  Identities=7%  Similarity=0.121  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|+++..++ ++..+.++..+|  +++.||.|++.
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            4889999999999999999999999998762 443333333443  47999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.13  E-value=0.26  Score=40.52  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  799999776

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.11  E-value=0.24  Score=40.83  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+|..|.++|..|...|.  ++.++|.++
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999999987  799999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.57  E-value=0.28  Score=40.26  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      +|.|||+|--|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            58999999999999999999984  899999876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.52  E-value=0.25  Score=40.97  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .+-|||+|.-|.+.|..|.++|++|.+.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            57899999999999999999999999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.16  E-value=0.26  Score=42.02  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~~   56 (523)
                      -|+|+|+|-.|+.+...+...| .+|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3899999999999999999999 68999998764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=87.13  E-value=0.24  Score=40.99  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      ..|.|||+|-.|+++|..|...|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999999885  788999764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.81  E-value=0.28  Score=44.45  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        21 ~~~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ++..|+|+|| |.-|..++.+|.++|++|..+.|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4567999996 99999999999999999999998753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.61  E-value=0.23  Score=44.87  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +.|+|.|| |+-|..++.+|.+.|++|..+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            56999997 9999999999999999999999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.20  E-value=0.29  Score=40.43  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      +|.|||+ |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6899995 9999999999999994  899998763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.07  E-value=0.25  Score=42.11  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      .|+|+|+|..|+.++..+...|. +|.++|+++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            58899999999999999999996 7999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.02  E-value=0.37  Score=40.57  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        22 ~~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ...|+|+|+|=++-+++++|.+.|. +|.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4679999999999999999999995 799998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.51  E-value=0.37  Score=39.68  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.8

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGa-Gl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      .|.|||+ |..|.++|..|+..|.  .+.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899995 9999999999999986  588888764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.01  E-value=0.36  Score=39.62  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      +|.|||+|-.|.++|..|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999999885  699999764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.97  E-value=0.99  Score=40.04  Aligned_cols=50  Identities=24%  Similarity=0.189  Sum_probs=38.1

Q ss_pred             HHHHHHcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCC
Q 009881          286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT  337 (523)
Q Consensus       286 ~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A~~VI~~-p~~~  337 (523)
                      -+.....-+.-+....|..+..+  ++++++|++.+|++++|+.||+. ..++
T Consensus        74 k~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          74 KYLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccCcce
Confidence            34444444556667889999887  78899999999999999999975 4443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.92  E-value=0.67  Score=36.68  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             cccEEEECCC-----------hhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           22 AFDLIVIGTG-----------LPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        22 ~~DVIIIGaG-----------l~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      ...|+|||+|           .++..|+.+|.+.|++|.++..|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            4579999999           4788999999999999999998863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.91  E-value=0.33  Score=40.48  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+|+|-.|+.++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58899999999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=0.4  Score=40.20  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            58999999999999998888999999998765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=84.26  E-value=0.4  Score=39.53  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G-~~VlvlE~n~   55 (523)
                      ++.+||+|--|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5889999999999999888887 9999999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.95  E-value=0.54  Score=36.74  Aligned_cols=51  Identities=12%  Similarity=0.100  Sum_probs=37.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCcEEEEE-eCCCcEEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~-l~~G~~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++++.|+++.    ++..+... ..+++++.||.||+.
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEEC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEEe
Confidence            4788888899999999999999999983    34322222 123357999999864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.47  E-value=0.63  Score=43.85  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..+.|+|.| +|+-|..++..|.++|++|+++|++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            445699998 89999999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.27  E-value=0.59  Score=38.64  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      ..|.|||+|..|.++|..|.+.+. ++.++|.++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            479999999999999999999885 688899765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.5  Score=39.66  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ..|+|||.|--|-..|.+|+..|-+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.97  E-value=0.45  Score=40.34  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        23 ~DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      -.|+|+|+|-.|+.++..+...|. +|.++|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            369999999999999999999995 799999874

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.97  E-value=0.76  Score=36.74  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCh-----------hHHHHHHHHhhCCCeEEEeccCCC
Q 009881           20 PTAFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        20 ~~~~DVIIIGaGl-----------~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      .....|+|||+|.           ++..|+.+|.+.|++|.++..|+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3446899999985           788999999999999999999863

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=1.6  Score=34.40  Aligned_cols=54  Identities=13%  Similarity=-0.009  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCceeEEEEecCCCc-EEEEEeCCCc------EEEcCEEEEC
Q 009881          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLASGQ------DILSHKLVLD  333 (523)
Q Consensus       279 ~eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~-~~gV~l~~G~------~i~A~~VI~~  333 (523)
                      .++.+.+.+..+..|.++++|+.|++|..+. +|. +..+....|+      .+.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a  123 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVDCLLWA  123 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCCEEEEE
Confidence            5788999999999999999999999998763 442 2223334443      3578888753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.64  E-value=0.56  Score=40.93  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009881           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (523)
Q Consensus        19 ~~~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n   54 (523)
                      +....+|+|||+|-+|.-+|..|++.+.++.++=+.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            345678999999999999999999999998887665

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.42  E-value=0.49  Score=40.92  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~   55 (523)
                      .|+|+|+|..|+.++..+...|- +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            78999999999999888876665 899998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.88  E-value=0.75  Score=39.38  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=30.9

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIG-aGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      +..-|+|.| +|-.|..+|..|++.|.+|.+++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            445688888 68999999999999999999999975

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=81.79  E-value=0.63  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~-~VlvlE~n~~   56 (523)
                      .|+|+|+|--|+.++..+...|. +|.+.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            58999999999999999999997 6888898763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.64  E-value=0.59  Score=38.10  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009881           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (523)
Q Consensus        24 DVIIIGaGl~GL~aA~~La~~G~--~VlvlE~n~   55 (523)
                      +|.|||+|--|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999998884  799999774

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=80.99  E-value=0.71  Score=41.87  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCCC
Q 009881           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (523)
Q Consensus        23 ~DVIIIGa-Gl~GL~aA~~La~~G~~VlvlE~n~~   56 (523)
                      -.|+|+|| |..|...+.+|.++|++|.++.|+..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            45999994 99999999999999999999988643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.85  E-value=0.91  Score=40.37  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=38.9

Q ss_pred             CCCCCCCCcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009881           14 PYPPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (523)
Q Consensus        14 ~~~~l~~~~~DVIIIGaGl-~GL~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   65 (523)
                      +.|||...  -++|.|++= -|..+|..|+++|.+|.+.+++..-+.....+.
T Consensus         1 ~~psl~gK--~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           1 AKPPFVSR--SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCCCC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCCCC--EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            35777664  367777764 688999999999999999999987776665544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=80.14  E-value=0.73  Score=38.86  Aligned_cols=35  Identities=6%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009881           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (523)
Q Consensus        21 ~~~DVIIIGaGl~GL~aA~~La~~G~~VlvlE~n~   55 (523)
                      ....|+|+|+|=++-+++.+|.+.+.+|.|+-|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            44679999999999999999999999999998873