Citrus Sinensis ID: 009909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MDCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
cccccccccEEEEEEcccHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEccccccccccccccccEEEEEEccccccccHHHHHHHHHccccEEEEEEcHHHHHHHHHHHcccccccccccccccEEEHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHccccEEEEccHHHHHHHccccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccHHHcccccEEEcccccEEEccccHHHHHHHHHHHHHHccc
cccccccccEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEcccEEEEccHHHcccccEEEEEEcccccccHHHHHHHHHccccHEEEccccHHHHHHHHHHccHHccccccHHcccHEcHHHHHHHHHHcccccccccccccHHHHHHHHHcccccHcHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccHHcHccccccccccccccccHHHHHHHHHccccEEcccccccccHHHccccccccccccccHHHcccccccccccccccccccccccEEEHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHcccEEEEccccHHHHHccccccEEEEccccHHHHHHHHHHHccEEEcHHHHHHHHHHHccccccccccHHHHHHHHccccccccHHHcccEEEEEHcccHHHHHHHHHHHHHHHHHHHHHHHHc
mdctyrkplkihlvtstespefTHLARALSqsslvgldaewkpqrshqsnfprvsllqlacqpgprfnpesdesnaSVVFLLDLSSIPLPSIWELLKELfvspdilklgfkfkqDLIYLSStfcsqgcdigfdrvepylDITSIYnhlhhkqlgrklpkETKSLANICKELLDIslskelqcsdwsnrplteeqknyaaiDAHCLIEIFNIFQVKVaqkgnscssiseldssnldlglkgilekpdignktVRFKLCEALDIIRATsyysqclpegvVSRVSylntmpmdESLVKIVRKYGEKILLRecdkapktskkkgrkrssVIVDSRekrlddigdwqgpppwdlslggdgypkFLCDVMVEGLAKHLRCvgidaatprskkpeprelidQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKcngrfiqkplsTEEAVEAAKgfqripdclfdknlqfwqcmdcnQLYWEVMSAYLFIFLTpayfsfwl
mdctyrkplkihlvtstespefTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGIlekpdignktVRFKLCEALDIIRATsyysqclpeGVVSRVSYLNTMPMDESLVKIVRKYGEKIllrecdkapktskkkgrkrssvivdsrekrlddigdwqgpppWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGidaatprskkpeprelidqtskekrVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
MDCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFlldlssiplpsiWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDkapktskkkgrkrssVIVDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
*********KIHLV******************************************L*******************SVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSIS*L*SSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLREC***************************DIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDA**********************VLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFW*
***TYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG*K**KETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCS*****************LEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILL*******************VIVDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTE**********RIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
MDCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAE*********NFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDK****************VDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
*DCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN*CSSISELDSS***************GNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLR****************************DDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHii
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MDCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGILEKPDIGNKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFLTPAYFSFWL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q179T2719 Probable exonuclease mut- N/A no 0.362 0.262 0.286 3e-12
Q8N9H8876 Probable exonuclease mut- yes no 0.367 0.219 0.288 1e-11
Q9VIF1625 Probable exonuclease mut- yes no 0.354 0.296 0.291 1e-11
P34607910 Probable exonuclease mut- yes no 0.446 0.256 0.253 1e-08
Q14191 1432 Werner syndrome ATP-depen no no 0.302 0.110 0.284 1e-06
O09053 1401 Werner syndrome ATP-depen yes no 0.275 0.102 0.306 2e-06
Q12149733 Exosome complex exonuclea yes no 0.206 0.147 0.275 0.0003
A6V8R6376 Ribonuclease D OS=Pseudom yes no 0.181 0.252 0.292 0.0004
P34603784 Uncharacterized protein Z no no 0.314 0.209 0.242 0.0004
Q28RA7386 Ribonuclease D OS=Jannasc yes no 0.323 0.437 0.268 0.0006
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527 PE=3 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 24/213 (11%)

Query: 11  IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPE 70
           +HLV S +  +F  +   L + S++  D+EWKP     +    VSL+QLA          
Sbjct: 437 VHLVDSKD--KFYAMLSDLCRQSMIAFDSEWKPTFGGAN---EVSLIQLATWDD------ 485

Query: 71  SDESNASVVFLLDLSSIPL-PSIWELL-KELFVSPDILKLGFKFKQDLIYLSSTFCSQGC 128
                   V+++D+    L P  W  L K +F   D+LKL F    D+        S   
Sbjct: 486 --------VYMIDVMVSQLEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNV 537

Query: 129 DIGFDRVEPYLDITSIYNHLHHKQLGRKLPKE---TKSLANICKELLDISLSKELQCSDW 185
                     LD+  ++ H+      R    E    ++LAN+ +  L   L K  Q S+W
Sbjct: 538 MYSSQSTSAILDLQLLWRHVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQFSNW 597

Query: 186 SNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218
           + RPL +EQ  YAA+DA CL+EI++  + ++  
Sbjct: 598 AQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTH 630

Aedes aegypti (taxid: 7159)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1 SV=3 Back     alignment and function description
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster GN=CG9247 PE=1 SV=1 Back     alignment and function description
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1 SV=1 Back     alignment and function description
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 Back     alignment and function description
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 Back     alignment and function description
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1 Back     alignment and function description
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|P34603|YO63_CAEEL Uncharacterized protein ZK1098.3 OS=Caenorhabditis elegans GN=ZK1098.3 PE=4 SV=2 Back     alignment and function description
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
255549190523 3-5 exonuclease, putative [Ricinus commu 0.955 0.954 0.724 0.0
359490814513 PREDICTED: probable exonuclease mut-7 ho 0.934 0.951 0.722 0.0
302143936526 unnamed protein product [Vitis vinifera] 0.934 0.927 0.703 0.0
224135103491 predicted protein [Populus trichocarpa] 0.919 0.977 0.678 0.0
297808445508 hypothetical protein ARALYDRAFT_489298 [ 0.929 0.954 0.662 0.0
15237941505 3'-5' exonuclease domain-containing prot 0.923 0.954 0.652 0.0
357436407512 hypothetical protein MTR_1g007660 [Medic 0.936 0.955 0.646 0.0
449456993524 PREDICTED: probable exonuclease mut-7 ho 0.952 0.948 0.639 0.0
356550873506 PREDICTED: probable exonuclease mut-7 ho 0.911 0.940 0.622 1e-163
356554607499 PREDICTED: LOW QUALITY PROTEIN: probable 0.913 0.955 0.614 1e-160
>gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis] gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/508 (72%), Positives = 422/508 (83%), Gaps = 9/508 (1%)

Query: 1   MDCTYRKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLA 60
           MD + + PL IHLVT+T SPEFTHL  +L++SS++GLDAEWKP R HQS FP V+LLQLA
Sbjct: 1   MDPSDQNPLTIHLVTTTNSPEFTHLTESLTRSSIIGLDAEWKPVRGHQSTFPTVALLQLA 60

Query: 61  CQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLS 120
           CQ  P+F  +S ES   +VFLLDLS I L SIW+LLKE+F SPDILKLGF+FKQDL+YLS
Sbjct: 61  CQLRPQFGSDSAES---LVFLLDLSLIRLSSIWKLLKEVFASPDILKLGFRFKQDLVYLS 117

Query: 121 STFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKEL 180
           STFCSQGCD GF +VEPYLDITSIY+ L HKQ GRK+PKETKSLA IC E+L ISLSKEL
Sbjct: 118 STFCSQGCDPGFHKVEPYLDITSIYHFLQHKQRGRKIPKETKSLATICNEVLGISLSKEL 177

Query: 181 QCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNL-DLGLK 239
           QCSDWS+RPLTEEQK YAAIDAHCL+EIFN+F+  V+++G   +++ EL SSN+   GLK
Sbjct: 178 QCSDWSHRPLTEEQKAYAAIDAHCLLEIFNVFRANVSKEGEFYNNVMELQSSNIISHGLK 237

Query: 240 GILEKPDIGNKTVRFKLCEALDIIRAT--SYYSQCLPEG--VVSRVSYLNTMPMDESLVK 295
            ILE+ D G+  +R +  EAL+II+AT  S  S  +  G  VVS  S +NT+PMDE L+ 
Sbjct: 238 EILERFDAGDALIRTRFSEALNIIQATVASEDSHRIARGERVVSITSSINTLPMDELLLN 297

Query: 296 IVRKYGEKILLRECDKAPKTSKKKGRKRSSVIVDSREKRLDDIGDWQGPPPWDLSLGGDG 355
           IVR++GEKI+L E D+ PK  +KKG+KRSS IV  REK L +I DWQGPPPWD SLGGDG
Sbjct: 298 IVRRFGEKIVLGESDRKPKAFRKKGKKRSS-IVTCREKLLGNICDWQGPPPWDFSLGGDG 356

Query: 356 YPKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQY 415
            PKFLCDVMVEGLAKHLRCVGIDAA P SKKPE RELIDQ  KE RVLLTRDAKLLR QY
Sbjct: 357 CPKFLCDVMVEGLAKHLRCVGIDAAIPYSKKPESRELIDQARKEHRVLLTRDAKLLRFQY 416

Query: 416 LIKNQIYRVKSLLKNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAK 475
           LIKNQIYRVKSLLKN+QLLEVIE F+L+ISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAK
Sbjct: 417 LIKNQIYRVKSLLKNEQLLEVIETFKLQISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAK 476

Query: 476 GFQRIPDCLFDKNLQFWQCMDCNQLYWE 503
           GFQ+IPDCLF+KNL+FWQCMDCNQLYWE
Sbjct: 477 GFQKIPDCLFNKNLEFWQCMDCNQLYWE 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490814|ref|XP_002271858.2| PREDICTED: probable exonuclease mut-7 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa] gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana] gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana] gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana] gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357436407|ref|XP_003588479.1| hypothetical protein MTR_1g007660 [Medicago truncatula] gi|355477527|gb|AES58730.1| hypothetical protein MTR_1g007660 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449456993|ref|XP_004146233.1| PREDICTED: probable exonuclease mut-7 homolog [Cucumis sativus] gi|449522385|ref|XP_004168207.1| PREDICTED: probable exonuclease mut-7 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550873|ref|XP_003543807.1| PREDICTED: probable exonuclease mut-7 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356554607|ref|XP_003545636.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2152871505 AT5G24340 [Arabidopsis thalian 0.923 0.954 0.622 2.2e-160
UNIPROTKB|F1Q045850 EXD3 "Uncharacterized protein" 0.377 0.231 0.275 6.5e-18
UNIPROTKB|E1BWV5725 EXD3 "Uncharacterized protein" 0.335 0.241 0.310 7.7e-16
UNIPROTKB|Q8N9H8876 EXD3 "Probable exonuclease mut 0.373 0.222 0.285 1.1e-15
UNIPROTKB|F1RVW3863 EXD3 "Uncharacterized protein" 0.375 0.227 0.271 4.3e-15
ZFIN|ZDB-GENE-091204-349861 exd3 "exonuclease 3'-5' domain 0.362 0.219 0.298 2.7e-14
WB|WBGene00003504910 mut-7 [Caenorhabditis elegans 0.448 0.257 0.258 1.5e-12
UNIPROTKB|P34607910 mut-7 "Probable exonuclease mu 0.448 0.257 0.258 1.5e-12
UNIPROTKB|G3X7J6724 G3X7J6 "Uncharacterized protei 0.371 0.267 0.273 2.2e-10
FB|FBgn0032924625 Nbr "Nibbler" [Drosophila mela 0.233 0.195 0.335 3.8e-09
TAIR|locus:2152871 AT5G24340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
 Identities = 308/495 (62%), Positives = 373/495 (75%)

Query:     9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFN 68
             LKI+LV+ST+S EFTHL  + ++S+++ LDAEWKPQ S+ S+FP V+LLQ+AC    R +
Sbjct:     5 LKIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVAC----RLS 60

Query:    69 PESDESNASVVFXXXXXXXXXXXXWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGC 128
               +D S+   VF            WELL ++FVSPD+LKLGF+FKQDL+YLSSTF   GC
Sbjct:    61 HATDVSD---VFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGC 117

Query:   129 DIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNR 188
             + GF  V+ YLDITSIYN+L HK+ GRK PK+ KSLA ICKE+LDISLSKELQCSDWS R
Sbjct:   118 EGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYR 177

Query:   189 PLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCSSISELDSSNLDLGLKGILEKPDIG 248
             PLTEEQK YAA DAHCL++IF++F+  + +       I+  D   +++GL+ IL + D  
Sbjct:   178 PLTEEQKLYAATDAHCLLQIFDVFEAHLVE------GITVQDLRVINVGLQEILTESDYS 231

Query:   249 NKTVRFKLCEALDIIRATSYYSQCLPEGVVSRVSYLNTMPMDESLVKIVRKYGEKILLRE 308
             +K V  KLC+A D+IR+ S   Q +  GVV R + LNTMPMDE+L+KIVRK+GE+ILL+E
Sbjct:   232 SKIVTVKLCKATDVIRSMSENGQNIANGVVPRKTTLNTMPMDENLLKIVRKFGERILLKE 291

Query:   309 CDXXXXXXXXXXXXXXXVIVDSREKRLDDIGDWQGPPPWDLSLGGDGYPKFLCDVMVEGL 368
              D                   +  K+L    DWQGPPPWD SLGGDG PKFL DVMVEGL
Sbjct:   292 SDLLPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFLLDVMVEGL 351

Query:   369 AKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLL 428
             AKHLRCVGIDAA P SKKP+ REL+DQ  KE RVLLTRD KLLRHQ L K+QIYRVKSLL
Sbjct:   352 AKHLRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLL 411

Query:   429 KNQQLLEVIEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKN 488
             KN+QLLEVIE FQLKIS +QLMSRCTKCNG+FIQKPLS EEA+EAAKGFQRIP+CLF+KN
Sbjct:   412 KNEQLLEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRIPNCLFNKN 471

Query:   489 LQFWQCMDCNQLYWE 503
             L+FWQCM+C+QLYWE
Sbjct:   472 LEFWQCMNCHQLYWE 486
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISS
UNIPROTKB|F1Q045 EXD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWV5 EXD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N9H8 EXD3 "Probable exonuclease mut-7 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVW3 EXD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-349 exd3 "exonuclease 3'-5' domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00003504 mut-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34607 mut-7 "Probable exonuclease mut-7" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7J6 G3X7J6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0032924 Nbr "Nibbler" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 1e-60
pfam01927146 pfam01927, DUF82, Protein of unknown function DUF8 2e-42
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 5e-25
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 9e-23
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 4e-21
cd06129161 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma 4e-20
cd06142178 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai 3e-19
COG1656165 COG1656, COG1656, Uncharacterized conserved protei 7e-19
COG0349361 COG0349, Rnd, Ribonuclease D [Translation, ribosom 4e-14
cd09018150 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e 6e-14
cd06147192 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease d 1e-08
TIGR01388367 TIGR01388, rnd, ribonuclease D 1e-05
cd06148197 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom 1e-04
PRK10829373 PRK10829, PRK10829, ribonuclease D; Provisional 4e-04
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
 Score =  197 bits (503), Expect = 1e-60
 Identities = 87/208 (41%), Positives = 119/208 (57%), Gaps = 23/208 (11%)

Query: 11  IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPE 70
           IH+V S E  E   LA +L    +VG+D+EWKP     S  PRV++LQLA +        
Sbjct: 1   IHIVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLGDS-DPRVAILQLATE-------- 51

Query: 71  SDESNASVVFLLDLSSIP---LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQG 127
                   VFLLDL ++          LLK LF  PD+LKLGF FKQDL  LS+++ +  
Sbjct: 52  ------DEVFLLDLLALENLESEDWDRLLKRLFEDPDVLKLGFGFKQDLKALSASYPALK 105

Query: 128 CDIGFDRVEPYLDITSIYNHLHHKQLGRK---LPKETKSLANICKELLDISLSKELQCSD 184
           C   F+RV+  LD+ ++   L    +GR    LP +TK LA++ +E+L   L K  QCS+
Sbjct: 106 CM--FERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKSEQCSN 163

Query: 185 WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212
           W  RPL EEQ  YAA+DA+CL+E+F+  
Sbjct: 164 WERRPLREEQILYAALDAYCLLEVFDKL 191

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Length = 193
>gnl|CDD|216792 pfam01927, DUF82, Protein of unknown function DUF82 Back     alignment and domain information
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>gnl|CDD|224570 COG1656, COG1656, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D Back     alignment and domain information
>gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
PF01927147 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T 100.0
COG1656165 Uncharacterized conserved protein [Function unknow 100.0
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 99.97
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 99.96
PRK10829373 ribonuclease D; Provisional 99.96
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 99.95
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.94
TIGR01388367 rnd ribonuclease D. This model describes ribonucle 99.93
COG0349361 Rnd Ribonuclease D [Translation, ribosomal structu 99.93
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.93
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.82
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.76
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.74
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.71
KOG2206687 consensus Exosome 3'-5' exoribonuclease complex, s 99.69
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.63
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.63
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.62
PRK05755 880 DNA polymerase I; Provisional 99.57
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.51
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.4
PRK14975 553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.27
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 99.19
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.08
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 98.95
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 98.61
COG4634113 Uncharacterized protein conserved in bacteria [Fun 98.59
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 97.27
PRK06063313 DNA polymerase III subunit epsilon; Provisional 96.99
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 96.91
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 96.85
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 96.67
PRK07942232 DNA polymerase III subunit epsilon; Provisional 96.59
PRK06310250 DNA polymerase III subunit epsilon; Validated 96.54
PRK06807313 DNA polymerase III subunit epsilon; Validated 96.52
PRK06309232 DNA polymerase III subunit epsilon; Validated 96.51
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 96.41
PRK07740244 hypothetical protein; Provisional 96.38
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 96.36
PRK08517257 DNA polymerase III subunit epsilon; Provisional 96.34
PRK05168211 ribonuclease T; Provisional 96.33
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 96.3
PRK07883557 hypothetical protein; Validated 96.3
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 96.28
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 96.12
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 96.08
PRK09145202 DNA polymerase III subunit epsilon; Validated 95.98
PRK05711240 DNA polymerase III subunit epsilon; Provisional 95.96
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 95.95
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 95.81
PRK09146239 DNA polymerase III subunit epsilon; Validated 95.78
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 95.63
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 95.63
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 95.47
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 95.44
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 95.36
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 95.19
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 93.94
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 93.65
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 93.47
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 93.26
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 93.0
PRK00448 1437 polC DNA polymerase III PolC; Validated 92.88
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 91.67
PRK05601377 DNA polymerase III subunit epsilon; Validated 91.59
PRK06195309 DNA polymerase III subunit epsilon; Validated 91.29
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 90.95
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 90.58
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 89.87
cd00814 319 MetRS_core catalytic core domain of methioninyl-tR 89.77
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 89.68
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 88.64
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 88.58
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 88.36
PRK11779476 sbcB exonuclease I; Provisional 88.08
PF1371937 zinc_ribbon_5: zinc-ribbon domain 87.11
PRK07247195 DNA polymerase III subunit epsilon; Validated 87.0
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 86.66
PF1371736 zinc_ribbon_4: zinc-ribbon domain 85.59
PF0879233 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I 85.28
PF09281138 Taq-exonuc: Taq polymerase, exonuclease; InterPro: 85.08
COG404965 Uncharacterized protein containing archaeal-type C 84.69
PRK12268 556 methionyl-tRNA synthetase; Reviewed 84.64
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 84.32
PLN02224 616 methionine-tRNA ligase 83.77
PRK09182294 DNA polymerase III subunit epsilon; Validated 83.76
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 83.62
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 83.36
TIGR0209838 MJ0042_CXXC MJ0042 family finger-like domain. This 82.78
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 82.74
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 82.67
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 82.12
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 81.78
PRK11893 511 methionyl-tRNA synthetase; Reviewed 81.59
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 80.08
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function Back     alignment and domain information 
Probab=100.00  E-value=6.5e-46  Score=340.96  Aligned_cols=146  Identities=35%  Similarity=0.637  Sum_probs=134.0

Q ss_pred             CEEEEecccHHHHHHHHhcCCceecCCCCCCChHHHHHhhhcCCcEEEecChhHHHhhcccCCcEEEEcCCCHHHHHHHH
Q 009909          357 PKFLCDVMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLLKNQQLLEV  436 (522)
Q Consensus       357 ~rfl~D~mLg~Lar~LR~lG~D~~~~~~~~~~d~~ll~~A~~e~RiiLTrd~~l~~~~~~~~~~~~~v~~~~~~~QL~~v  436 (522)
                      ||||||.|||+||||||++||||++..  +.+|.+++++|++|+|||||+|++|+++....++ ++++.++++.+||.+|
T Consensus         1 ~rfl~D~~L~~Lar~LR~lG~Dt~~~~--~~~D~~il~~A~~e~RillTrd~~l~~~~~~~~~-~~li~~~~~~~QL~ev   77 (147)
T PF01927_consen    1 MRFLVDAMLGRLARWLRLLGYDTLYSR--DIDDDEILELAREEGRILLTRDRDLLKRRRVSGG-VILIRSDDPEEQLREV   77 (147)
T ss_pred             CEEEEeCCHHHHHHHHHHCCCcEEEeC--CCChHHHHHHhhhCCeEEEECCHHHHHHhhccCC-EEEEcCCCHHHHHHHH
Confidence            799999999999999999999999876  4689999999999999999999999998775544 7888999999999999


Q ss_pred             HHhcCcCcccCcCCCcccCCCCccccCCCChHHHHHhhhcCcccCccccccCCceeecCCCCeEEecccchhhHHhh
Q 009909          437 IEAFQLKISEDQLMSRCTKCNGRFIQKPLSTEEAVEAAKGFQRIPDCLFDKNLQFWQCMDCNQLYWEVMSAYLFIFL  513 (522)
Q Consensus       437 ~~~f~l~~~~~~~~sRC~~CN~~l~~~~~~~e~~~~~~~~~~~vp~~v~~~~~~F~~C~~CgkvYW~GsH~~r~~~~  513 (522)
                      +++|++.+.+++.||||+.||++|.  +++++++.      +.||++|++.+++||+||+||||||+||||+|+...
T Consensus        78 ~~~~~l~~~~~~~~sRC~~CN~~L~--~v~~~~v~------~~vp~~v~~~~~~f~~C~~C~kiyW~GsH~~~~~~~  146 (147)
T PF01927_consen   78 LERFGLKLRLDPIFSRCPKCNGPLR--PVSKEEVK------DRVPPYVYETYDEFWRCPGCGKIYWEGSHWRRMEER  146 (147)
T ss_pred             HHHcCCccccCCCCCccCCCCcEee--echhhccc------cccCccccccCCeEEECCCCCCEecccccHHHHHhh
Confidence            9999999999999999999999985  68888875      479999999999999999999999999999998753

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
>COG1656 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PF13717 zinc_ribbon_4: zinc-ribbon domain Back     alignment and domain information
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [] Back     alignment and domain information
>PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif Back     alignment and domain information
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
3cym_A440 Crystal Structure Of Protein Bad_0989 From Bifidoba 2e-06
2fbt_A205 Wrn Exonuclease Length = 205 7e-06
2e6l_A208 Structure Of Mouse Wrn Exonuclease Domain Length = 9e-06
3saf_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 9e-05
2hbj_A410 Structure Of The Yeast Nuclear Exosome Component, R 1e-04
3sah_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 9e-04
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 Back     alignment and structure 
Iteration: 1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 163 SLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222
            LA + +  L ++L+KE   +DWS RPL  + +NYAA+D   LIE+    + ++ ++G  
Sbjct: 134 GLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKM 193
Query: 223 CSSISELD 230
             +  E D
Sbjct: 194 EWAQEEFD 201
>pdb|2FBT|A Chain A, Wrn Exonuclease Length = 205 Back     alignment and structure
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain Length = 208 Back     alignment and structure
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 Back     alignment and structure
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 Back     alignment and structure
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 5e-36
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 9e-20
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 1e-19
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 7e-19
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 2e-18
3cym_A440 Uncharacterized protein BAD_0989; structural genom 7e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
 Score =  132 bits (333), Expect = 5e-36
 Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 35/210 (16%)

Query: 8   PLKIHLVTSTESPEFT--HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGP 65
           P  I          F    ++  LS   +VG D EW P         RV+++QL      
Sbjct: 14  PGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIY-KPGKRSRVAVIQLCVSES- 71

Query: 66  RFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCS 125
                         +L  +SS+ +    + LK L  +  I K G   + D   L   F  
Sbjct: 72  ------------KCYLFHISSMSV--FPQGLKMLLENKSIKKAGVGIEGDQWKLLRDF-- 115

Query: 126 QGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISL--SKELQCS 183
                   ++E ++++T + N             ET SL  + K +L   L   K ++CS
Sbjct: 116 -----DV-KLESFVELTDVANEKLK-------CAETWSLNGLVKHVLGKQLLKDKSIRCS 162

Query: 184 DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213
           +WSN PLTE+QK YAA DA+  + I+    
Sbjct: 163 NWSNFPLTEDQKLYAATDAYAGLIIYQKLG 192
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 99.94
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 99.94
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 99.94
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 99.91
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 99.91
3cym_A440 Uncharacterized protein BAD_0989; structural genom 99.84
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 99.68
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 99.6
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 99.32
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 98.8
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 98.18
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 97.86
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 97.25
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 97.23
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 96.26
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 95.18
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 94.84
2qxf_A482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 94.83
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 93.94
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 93.71
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 91.03
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 90.07
3j20_Y50 30S ribosomal protein S27AE; archaea, archaeal, KI 88.61
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 87.66
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 83.8
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 83.15
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 83.13
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 82.76
2pk7_A69 Uncharacterized protein; NESG, PLR1, putative tetr 81.26
2jr6_A68 UPF0434 protein NMA0874; solution, structural geno 80.96
2hf1_A68 Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A 80.93
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 80.73
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 80.26
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
Probab=99.94  E-value=3.5e-26  Score=220.01  Aligned_cols=184  Identities=30%  Similarity=0.409  Sum_probs=149.0

Q ss_pred             CCCccEEEEcCCChHHHH----HHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEE
Q 009909            6 RKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFL   81 (522)
Q Consensus         6 ~~~~~i~~I~t~~~~el~----~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~l   81 (522)
                      ..+.+|++|++  .+++.    .+...+...++||||+||.+.+.. +..++++++|+|+.             ++.+|+
T Consensus        12 ~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~~~   75 (208)
T 2e6m_A           12 EFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKCYL   75 (208)
T ss_dssp             CCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEEEE
T ss_pred             ccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeEEE
Confidence            44577999998  78887    555677788899999999986311 14678999999984             368899


Q ss_pred             EeCCCCCchhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCC
Q 009909           82 LDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET  161 (522)
Q Consensus        82 iDl~~l~~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~  161 (522)
                      ||+..+.  .+.+.|+++|+|++|.|||||+|+|+..|.+.+|+        .+.++||++++|+|++++.       .+
T Consensus        76 i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi--------~~~~~fDlt~lAayll~~~-------~~  138 (208)
T 2e6m_A           76 FHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV--------KLESFVELTDVANEKLKCA-------ET  138 (208)
T ss_dssp             ECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC--------CCCSEEEHHHHHHHHTTCC-------CC
T ss_pred             EECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC--------CCCCEEEHHHHHHHHccCC-------CC
Confidence            9876543  24568999999999999999999999999887765        2356999999999999863       57


Q ss_pred             ccHHHHHHHHcCCcCcc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909          162 KSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS  222 (522)
Q Consensus       162 ~sL~~L~~~~Lg~~l~K--~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l  222 (522)
                      +||+.|++++||..+.|  ..+++||+.|||+++|+.|||.||+++++||+.|.++|++.+.+
T Consensus       139 ~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~  201 (208)
T 2e6m_A          139 WSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF  201 (208)
T ss_dssp             CCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             hhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            99999999999998844  67899999999999999999999999999999999998887654
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Back     alignment and structure
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} Back     alignment and structure
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 1e-20
d2hbka2292 c.55.3.5 (A:129-420) Exosome complex exonuclease R 2e-10
d1yt3a3193 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai 1e-07
d1kfsa1195 c.55.3.5 (A:324-518) Exonuclease domain of prokary 1e-05
d2hhva1171 c.55.3.5 (A:298-468) Exonuclease domain of prokary 1e-04
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.8 bits (217), Expect = 1e-20
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 28  ALSQSSLVGLDAEWKP-----QRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLL 82
            L+ +  V  D  W       +   +++   +S ++L+ +              ++   L
Sbjct: 42  ILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFL 87

Query: 83  DLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDIT 142
            L   P     + L   F S  +  +G + ++DL  L               +   +++ 
Sbjct: 88  RLPK-PFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLV--------IRNAINVG 138

Query: 143 SIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAID 201
            +        +      E      +   +L   L + +   + W  +   EEQ   AAI+
Sbjct: 139 KLAAEARGTLV-----LEFLGTRELAHRVLWSDLGQLDSIEAKWE-KAGPEEQLEAAAIE 192

Query: 202 AHCLIEIFNIF 212
              ++ +++  
Sbjct: 193 GWLIVNVWDQL 203
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 99.97
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 99.97
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 99.92
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.86
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.7
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 97.86
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 96.74
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 95.77
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 94.92
d2guia1174 N-terminal exonuclease domain of the epsilon subun 94.31
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 93.79
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 89.91
d1sp1a_29 Transcription factor sp1 {Human (Homo sapiens) [Ta 84.34
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 83.39
d1qtma1130 Exonuclease domain of prokaryotic DNA polymerase { 83.15
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 82.97
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease D, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.5e-31  Score=249.77  Aligned_cols=176  Identities=27%  Similarity=0.413  Sum_probs=158.5

Q ss_pred             ccEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 009909            9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP   88 (522)
Q Consensus         9 ~~i~~I~t~~~~el~~ll~~l~~~~~Vg~D~E~~~~~~~~~~~~~vaLiQla~~~~~~~~~~~~~~~~~~v~liDl~~l~   88 (522)
                      ++|++|++  .++++++++.+...++||||+||.+..+   +.+++++||||+.              +.+|+||.....
T Consensus         1 ~~y~~I~t--~~~l~~~~~~l~~~~~i~~DtE~~~~~~---~~~~l~liQi~~~--------------~~~~~id~~~~~   61 (193)
T d1yt3a3           1 MNYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT   61 (193)
T ss_dssp             CCCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS
T ss_pred             CeEEEECC--HHHHHHHHHHHhcCCeEEEECcccCCCc---CCCcEEEEEEecC--------------Ccceeehhcchh
Confidence            47899998  8999999999999999999999998875   6789999999995              578999987654


Q ss_pred             chhhHHHHHHhhCCCCceEEEEechhhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhccccCCCCCcCCccHHHHH
Q 009909           89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC  168 (522)
Q Consensus        89 ~~~~~~~L~~lL~d~~I~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~~Dlt~La~yLl~~~~~~~~~~~~~sL~~L~  168 (522)
                         ....++++|+|++|.|||||+++|+.+|.+.+|+        ...+++| |++++++++..       .++||+.|+
T Consensus        62 ---~~~~l~~ll~~~~i~Kv~hn~~~D~~~L~~~~g~--------~~~~~~D-t~~~~~~l~~~-------~~~~L~~l~  122 (193)
T d1yt3a3          62 ---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE--------LPQPLID-TQILAAFCGRP-------MSWGFASMV  122 (193)
T ss_dssp             ---CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS--------CCSSEEE-HHHHHHHTTCC-------TTCCHHHHH
T ss_pred             ---hhHHHHHHhcCCCceEEEecchhhhhhhhhhcCc--------cccccch-hhHHHhhhccc-------cccchhhHH
Confidence               2356789999999999999999999999887765        3589999 89999988753       478999999


Q ss_pred             HHHcCCcCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009909          169 KELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS  222 (522)
Q Consensus       169 ~~~Lg~~l~K~~q~sdW~~RPL~~~Qi~YAA~DA~~ll~L~~~L~~~L~~~g~l  222 (522)
                      +++||++++|.+|.|||..|||+++|+.|||.||+++++||+.|.+++++.|.+
T Consensus       123 ~~~lg~~ldK~~q~sdW~~rPL~~~qi~YAA~Dv~~ll~L~~~L~~~l~~~~~l  176 (193)
T d1yt3a3         123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL  176 (193)
T ss_dssp             HHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred             hhhccccccchhhccccccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcH
Confidence            999999999999999999999999999999999999999999999999988764
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure