Citrus Sinensis ID: 009914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
Protein Sequence
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccEEccccccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHcHcHEEEEEHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEccccccEEEEEEcccccccccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MKQETVTLVLVNLAGIMeradesllpgvyKEVGaalhtdptglgslTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLvadstddsnrgvAFGWLQLTSNIGSLVGGLFSVVmapmtfmgipgwrISFHIVGLISVVVGTLVRlfandphfpdggtansdqvssksFRSDVKVLIQEAKSVIKIPSFQIIVAQgvtgsfpwsALSFAAMWLELTGFSHEKTAFLMALFVIASSlgglfggrmgdflsarfpnsGRIILAQISSLSAIPLAALLLLvlpddpstpvmhGLVLVVTGLfiswnapatnnpifaeivpeksrtsvyaMDRSFESilssfappvvGILAQhvygfkpipkgssateEIATDRANAASLAKALYTAIGIPMALCCFIYSFlystyprdRERARMEALIESEMQQLessnlpaaveyshvqfsesevlsvknrtviemdydyedgldlddndeKILLYRQLTFSNLGE
Flexible Loop (DISEMBL)
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHfpdggtansdqvsskSFRSDVKVLIQEAksvikipsFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVqfsesevlsvknrTVIEMDYDYEDGLDLDDNDEKILLYRQltfsnlge
Low Complexity Region (SEG)
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRiilaqisslsaiplaallllvlpddpstpVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMdydyedgldlddndeKILLYRQLTFSNLGE
Disordered region (IsUnstruct)
*****VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP********************DVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIP************RANAASLAKALYTAIGIPMALCCFIYSFLYSTYP***************************VEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTF*****
Disordered Region (DISOPRED)
*KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN***********************VKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRE***********************************************************NDEKILLYRQ********
Disordered Region (DISEMBL)
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGG*************SDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Disordered Region (DISPRO)
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLE******************EVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTF*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	522	2.2.26 [Sep-21-2011]
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.568	0.490	0.255	9e-12
B0JZE1	513	Protein spinster homolog	no	no	0.379	0.385	0.237	1e-06
P33449	389	Multidrug resistance prot	yes	no	0.254	0.341	0.281	3e-06
A2SWM2	504	Protein spinster homolog	yes	no	0.304	0.315	0.230	3e-05
Q6GIU7	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001
Q5HHX4	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001
Q6GBD5	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001
P0A0J6	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001
P0A0J7	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001
P0A0J5	388	Quinolone resistance prot	no	no	0.298	0.402	0.222	0.0001

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 72.0 bits (175), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 132/321 (41%), Gaps = 24/321 (7%)

Query: 5   TVT-LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAY 63
           TVT L  VNL   M+R     + GV  +V           G L     I    C PI  Y
Sbjct: 116 TVTVLCFVNLINYMDRFT---IAGVLTDVRNDFDIGNDSAGLLQTVFVISYMVCAPIFGY 172

Query: 64  LAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADST 123
           L  R++R  ++A+G  LW+  T L +F   F      RAL GIG A  +    ++++D  
Sbjct: 173 LGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAFRALVGIGEASYSTIAPTIISDLF 232

Query: 124 DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR 183
               R            +GS +G +     A +       WR +  +  ++ +V   L+ 
Sbjct: 233 VHDMRSKMLALFYFAIPVGSGLGYIVGSKTAHLA----NDWRWALRVTPILGIVAVFLI- 287

Query: 184 LFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSA 243
           L   DP    G +  S  + + +++ D+K L++    ++    F  +    V G+  W  
Sbjct: 288 LLIKDP--VRGHSEGSHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAF--VAGALAWWG 343

Query: 244 LSFAAMWLELT----GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS----ARFPNSGR 295
            SF  + +++         +  AF    F + + L GL G  +G FLS     R+P +  
Sbjct: 344 PSFIYLGMKMQPGNENIVQDDVAF---NFGVITMLAGLLGVPLGSFLSQYLVKRYPTADP 400

Query: 296 IILAQISSLSAIPLAALLLLV 316
           +I A    +SA  L    LLV
Sbjct: 401 VICAFGLLVSAPLLTGACLLV 421

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.
Drosophila melanogaster (taxid: 7227)

>sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 21/219 (9%)

Query: 10  LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQASCYPIAAYLAIRH 68
           ++++  ++   D   + GV  ++        +G G L T+F      +  PI  YL  R 
Sbjct: 68  ILSVGNVLNYLDRYTVAGVLLDIQQHFEVKDSGAGLLQTVFICSFMVAA-PIFGYLGDRF 126

Query: 69  NRAHVIALGAFLWAAATFLVAF--SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDS 126
           NR  +++ G F W+A TF  +F     F  + +SR L GIG A  +    +++ D    +
Sbjct: 127 NRKVILSSGIFFWSAITFSSSFIPKKYFWLLVLSRGLVGIGEASYSTIAPTIIGDLFTKN 186

Query: 127 NR----GVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV 182
            R     V +  + L S +G + G     V           WR +  +  ++ V+ GTL+
Sbjct: 187 TRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGD--------WRWALRVSPVLGVITGTLL 238

Query: 183 RLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSV 221
            +F      P     +++Q+   S+  D++ LI+    V
Sbjct: 239 LIFV-----PTAKRGHAEQLKGSSWIRDMRGLIKNRSYV 272

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Xenopus tropicalis (taxid: 8364)

>sp|P33449|BMR1_BACSU Multidrug resistance protein 1 OS=Bacillus subtilis (strain 168) GN=bmr PE=3 SV=2

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 2   KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIA 61
           K  T+T++L NL   +      L+  V   +   LH   T +G +    +I Q    PIA
Sbjct: 4   KNITLTILLTNL--FIAFLGIGLVIPVTPTIMNELHLSGTAVGYMVACFAITQLIVSPIA 61

Query: 62  AYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVAD 121
                R  R  +I +G   ++ + FL     T   + ISR L GI  A + P + + +AD
Sbjct: 62  GRWVDRFGRKIMIVIGLLFFSVSEFLFGIGKTVEMLFISRMLGGISAAFIMPGVTAFIAD 121

Query: 122 STDDSNRGVAFGWLQ 136
            T    R  A G++ 
Sbjct: 122 ITTIKTRPKALGYMS 136

Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 59  PIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSST--FAQVAISRALNGIGLALVAPAIQ 116
           PI  YL  R NR  +++ G F W+A T L +F +   +  + +SR L GIG +  +    
Sbjct: 109 PIFGYLGDRFNRKIILSCGIFFWSAVTLLSSFITKEYYWLLVLSRCLVGIGESSYSSISP 168

Query: 117 SLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISV 176
           +++ D   ++ R V      L   +GS +G     ++  +       W  +  +  ++ +
Sbjct: 169 TIIGDLFTNNKRTVMLSVFYLAIPLGSGLG----YILGSIAKDAGGHWYWALRVSPMLGL 224

Query: 177 VVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSV 221
             GTL+ +F ++P             +  S+  D+K L +    V
Sbjct: 225 TAGTLILIFVSEPKRGSADQPGGRLKTRTSWVCDMKALAKNRSYV 269

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q6GIU7|NORA_STAAR Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADVSPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSVVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

>sp|Q5HHX4|NORA_STAAC Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain COL) (taxid: 93062)

>sp|Q6GBD5|NORA_STAAS Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

>sp|P0A0J6|NORA_STAAW Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain MW2) (taxid: 196620)

>sp|P0A0J7|NORA_STAAU Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (taxid: 1280)

>sp|P0A0J5|NORA_STAAN Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 24  LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA 83
           +LP   K++G       + LG L    ++ Q    P    LA +  +  +I +G  L++ 
Sbjct: 25  VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80

Query: 84  ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS 143
           + F+ A    F+ + +SR + G+   +V P +  L+AD +    +   FG++    N G 
Sbjct: 81  SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140

Query: 144 LVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
           ++G      MA ++       R+ F+  G + ++   +  +  +DP
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDP 180

Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones.

Staphylococcus aureus (strain N315) (taxid: 158879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	522
255545694	526	carbohydrate transporter, putative [Rici	0.990	0.982	0.795	0.0
449437244	521	PREDICTED: uncharacterized protein LOC10	0.990	0.992	0.796	0.0
449502871	521	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.990	0.992	0.796	0.0
225459330	522	PREDICTED: purine efflux pump PbuE [Viti	1.0	1.0	0.798	0.0
356552876	503	PREDICTED: protein spinster-like [Glycin	0.961	0.998	0.774	0.0
357489577	506	Quinolone resistance protein norA [Medic	0.965	0.996	0.772	0.0
296090607	521	unnamed protein product [Vitis vinifera]	0.998	1.0	0.747	0.0
225439014	526	PREDICTED: uncharacterized protein LOC10	0.998	0.990	0.747	0.0
224099933	520	predicted protein [Populus trichocarpa]	0.996	1.0	0.760	0.0
449451621	520	PREDICTED: protein spinster-like [Cucumi	0.992	0.996	0.726	0.0

>gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis] gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis]

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/522 (79%), Positives = 464/522 (88%), Gaps = 5/522 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MKQET+TL+LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+SCYP+
Sbjct: 1   MKQETLTLLLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA++HNRAHVIA GA LWAAATFLVAFSST+ +VA+SRALNGIGLA+VAPAIQSLVA
Sbjct: 61  AAYLAVKHNRAHVIAFGALLWAAATFLVAFSSTYFEVAVSRALNGIGLAIVAPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDDSNRG AFGWLQLT+NIGS+VGGL SV++AP+TFMGIPGWR+SFH+VG+ISV+VG 
Sbjct: 121 DSTDDSNRGTAFGWLQLTANIGSIVGGLCSVLIAPITFMGIPGWRLSFHLVGIISVMVGV 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LV LFANDPHF D    N +Q  SKSF S+VK L++EAKSVIKIPSFQIIVAQG+TGSFP
Sbjct: 181 LVYLFANDPHFSDASMKNRNQDVSKSFFSEVKDLVREAKSVIKIPSFQIIVAQGITGSFP 240

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSAL+F+AMWLEL GFSHEKTA L+ALFVIA S GGLFGG+MGD LS RFPN+GRIILAQ
Sbjct: 241 WSALTFSAMWLELIGFSHEKTALLIALFVIAGSFGGLFGGKMGDILSTRFPNAGRIILAQ 300

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS SAIPLAA+LLL LPDDPST  MHGLVLVV GLFI+WNAPATNNPIFAEIVPEKSRT
Sbjct: 301 ISSASAIPLAAILLLGLPDDPSTAFMHGLVLVVMGLFITWNAPATNNPIFAEIVPEKSRT 360

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           SVYA+DRSFESILSSFAPP+VG+LAQ+VYG+KP+PKGSS +EEIATDR NAASLAKALYT
Sbjct: 361 SVYALDRSFESILSSFAPPIVGLLAQYVYGYKPLPKGSSESEEIATDRRNAASLAKALYT 420

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AIGIPMALCCFIYSFLY TYPRDRERA MEALIE EM+QL   + P +     V+  E+E
Sbjct: 421 AIGIPMALCCFIYSFLYRTYPRDRERAHMEALIELEMEQLILDDSPTSRGNCQVELVEAE 480

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
                  +VIEM Y+ ED  DLDD++EK++ YRQLTFSNL E
Sbjct: 481 -----EASVIEMVYEGEDCPDLDDDEEKMMPYRQLTFSNLSE 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437244|ref|XP_004136402.1| PREDICTED: uncharacterized protein LOC101220496 [Cucumis sativus]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/521 (79%), Positives = 459/521 (88%), Gaps = 4/521 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ETVTL+LVNLAG+MERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQA+CYP+
Sbjct: 1   MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA+RHNRAHVIALGAFLWA+ATFLVAFSSTF QVAISR LNGIGLALVAPAIQSLVA
Sbjct: 61  AAYLAVRHNRAHVIALGAFLWASATFLVAFSSTFLQVAISRGLNGIGLALVAPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDDSNRG+AFGWLQ T N+GS++GGL S+V+AP+TFMGIPGWRI+FH+VGLISV+VG 
Sbjct: 121 DSTDDSNRGLAFGWLQTTGNLGSIIGGLCSIVIAPITFMGIPGWRIAFHLVGLISVIVGI 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKS-FRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF 239
           LVRLFA DPHF D G    + V  +S F S+VKVL +EAKSV+KIPSFQIIVAQGVTGSF
Sbjct: 181 LVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEVKVLAREAKSVMKIPSFQIIVAQGVTGSF 240

Query: 240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILA 299
           PWSALSFA MWLEL GFSH+KTAFLM +FVI +SLGGLFGG+MGD LS RFPNSGRIILA
Sbjct: 241 PWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPNSGRIILA 300

Query: 300 QISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR 359
           QISS S IPLAA+LLL LPD PST V+HGLVL++ G FISWNAPATNNPIFAEIVPEKSR
Sbjct: 301 QISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIVGFFISWNAPATNNPIFAEIVPEKSR 360

Query: 360 TSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALY 419
           TSVYA+DRSFESILSSFAPPVVGILAQHVYG+KP+ KGSS +EEIATDR NAASLA+ALY
Sbjct: 361 TSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIATDRENAASLARALY 420

Query: 420 TAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSES 479
           TAIGIP+ALCCFIYSFLY TYPRDRERARME LIESEMQQ+ES   P+   YS V  + S
Sbjct: 421 TAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQIESERSPSGAGYSQVHLAGS 480

Query: 480 EVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNL 520
           + L   +RTVI+MDY+ +      D+DEK  LYRQLTFSN 
Sbjct: 481 DDLYTTDRTVIDMDYEDD---LDFDDDEKTALYRQLTFSNF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502871|ref|XP_004161766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101220496 [Cucumis sativus]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/521 (79%), Positives = 460/521 (88%), Gaps = 4/521 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ETVTL+LVNLAG+MERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQA+CYP+
Sbjct: 1   MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA+RHNRAHVIALGAFLWA+ATFLVAFSSTF QVAISR LNGIGLALVAPAIQSLVA
Sbjct: 61  AAYLAVRHNRAHVIALGAFLWASATFLVAFSSTFLQVAISRGLNGIGLALVAPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDDSNRG+AFGWLQ T N+GS++GGL S+V+AP+TFMGIPGWRI+FH+VGLISV+VG 
Sbjct: 121 DSTDDSNRGLAFGWLQTTGNLGSIIGGLCSIVIAPITFMGIPGWRIAFHLVGLISVIVGI 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKS-FRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF 239
           LVRLFA DPHF D G    + V  +S F S+VKVL +EAKSV+KIPSFQIIVAQGVTGSF
Sbjct: 181 LVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEVKVLAREAKSVMKIPSFQIIVAQGVTGSF 240

Query: 240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILA 299
           PWSALSFA MWLEL GFSH+KTAFLM +FVI +SLGGLFGG+MGD LS RFPNSGRIILA
Sbjct: 241 PWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPNSGRIILA 300

Query: 300 QISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR 359
           QISS S IPLAA+LLL LPD PST V+HGLVL++ G+FISWNAPATNNPIFAEIVPEKSR
Sbjct: 301 QISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIXGVFISWNAPATNNPIFAEIVPEKSR 360

Query: 360 TSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALY 419
           TSVYA+DRSFESILSSFAPPVVGILAQHVYG+KP+ KGSS +EEIATDR NAASLA+ALY
Sbjct: 361 TSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIATDRENAASLARALY 420

Query: 420 TAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSES 479
           TAIGIP+ALCCFIYSFLY TYPRDRERARME LIESEMQQ+ES   P+   YS V  + S
Sbjct: 421 TAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQIESERSPSGAGYSQVHLAGS 480

Query: 480 EVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNL 520
           + L   +RTVI+MDY+ +      D+DEK  LYRQLTFSN 
Sbjct: 481 DDLYTTDRTVIDMDYEDD---LDFDDDEKTALYRQLTFSNF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459330|ref|XP_002285800.1| PREDICTED: purine efflux pump PbuE [Vitis vinifera] gi|302141945|emb|CBI19148.3| unnamed protein product [Vitis vinifera]

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/522 (79%), Positives = 462/522 (88%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ET+TLVLVNLAGIMERADESLL GVYKEVGAALHTDPTGLGSLTLFRS+VQAS YP+
Sbjct: 1   MKAETLTLVLVNLAGIMERADESLLSGVYKEVGAALHTDPTGLGSLTLFRSMVQASSYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           A YLA RHNR HVIALGAFLWAAATFLVAFSSTF QVA+SRALNGIGLA+V PAIQSL+A
Sbjct: 61  AVYLAARHNRTHVIALGAFLWAAATFLVAFSSTFFQVAVSRALNGIGLAIVGPAIQSLIA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDD NRG+AFGWLQLT N+GS++GGL ++++A  TFMGI GWRISFH+VGL+SV+VG 
Sbjct: 121 DSTDDHNRGMAFGWLQLTGNLGSILGGLCALLLAQTTFMGIAGWRISFHLVGLVSVIVGI 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LVRLFANDPHFPDG    S+QV SKS  S+VK L+QEAKSVIKI SFQIIVAQGVTGSFP
Sbjct: 181 LVRLFANDPHFPDGAAKASNQVPSKSIWSEVKDLVQEAKSVIKITSFQIIVAQGVTGSFP 240

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLEL GFSH+KTAFL++LFVIA+SLGGLFGGRMGD LS   P+SGRIILAQ
Sbjct: 241 WSALSFAPMWLELIGFSHKKTAFLISLFVIAASLGGLFGGRMGDILSRIRPDSGRIILAQ 300

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISSLSAIPLAALLLLVLPD+PST  MHGLVL + GL ISWNAPATNNPIFAEIVPEKSRT
Sbjct: 301 ISSLSAIPLAALLLLVLPDNPSTAAMHGLVLFIMGLCISWNAPATNNPIFAEIVPEKSRT 360

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           S+YA+DRSFESILSSFAPPVVGILAQHVYG+KP+P+GSS +EEIATDR NAASLAKALYT
Sbjct: 361 SIYALDRSFESILSSFAPPVVGILAQHVYGYKPVPEGSSESEEIATDRGNAASLAKALYT 420

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AIGIPMALCC IYSFLYSTYPRD+ERA+MEALIESEMQQ+ES N+ A  EY   Q  ESE
Sbjct: 421 AIGIPMALCCLIYSFLYSTYPRDKERAQMEALIESEMQQMESDNICAGTEYPRAQLLESE 480

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
              V +R V E+DY+     D ++ND+K+LL+ QLTFSNLGE
Sbjct: 481 DAYVNDRGVTEIDYEGRSSPDFEENDDKMLLHHQLTFSNLGE 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552876|ref|XP_003544788.1| PREDICTED: protein spinster-like [Glycine max]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/519 (77%), Positives = 447/519 (86%), Gaps = 17/519 (3%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ETVTL+LVNLAGIMERADESLLPGVYKEVG ALHTDPTGLG LTLFRSIVQ+SCYP+
Sbjct: 1   MKAETVTLLLVNLAGIMERADESLLPGVYKEVGTALHTDPTGLGYLTLFRSIVQSSCYPV 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA+RHNRAHVIA+GAFLWAAATFLVAFSSTF QVA+SRA NGIGLALV PAIQSLVA
Sbjct: 61  AAYLAVRHNRAHVIAVGAFLWAAATFLVAFSSTFFQVALSRAFNGIGLALVTPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDDSNRG+AFGWLQLT N+GS++GGLFSV++AP+T  GIPGWRISFHIVGLIS++VG 
Sbjct: 121 DSTDDSNRGMAFGWLQLTGNVGSIIGGLFSVLIAPITVFGIPGWRISFHIVGLISIIVGA 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LV LFANDPHF D GT +  Q  +K+F S+VK L+QE+KSV+KI SFQIIVAQGVTGSFP
Sbjct: 181 LVYLFANDPHFSDNGTNSRRQAPNKTFWSEVKDLVQESKSVLKISSFQIIVAQGVTGSFP 240

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLELTGFSHEKTAFLM LFV+ASS+GGLFGG+MGD LS R+PNSGRIILAQ
Sbjct: 241 WSALSFAPMWLELTGFSHEKTAFLMGLFVVASSIGGLFGGKMGDILSKRYPNSGRIILAQ 300

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS SAIPLAALLL+ LPDDPST + HGLVL++ GL ISWN PATNNPIFAEIVPE+SRT
Sbjct: 301 ISSGSAIPLAALLLIGLPDDPSTIISHGLVLIIMGLLISWNGPATNNPIFAEIVPERSRT 360

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           SVYAMDRSFESILSSFAPP VGILAQHVYG+KPIP+GSS ++EI TDR NAASLAK+LYT
Sbjct: 361 SVYAMDRSFESILSSFAPPAVGILAQHVYGYKPIPEGSSESQEILTDRENAASLAKSLYT 420

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AIGIPMALCC IY+FLY TYPRDRERA+MEALIESEMQ +ES  L    E+      ESE
Sbjct: 421 AIGIPMALCCIIYTFLYRTYPRDRERAKMEALIESEMQLIESGGLAMDREF------ESE 474

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSN 519
            LS+ +    ++           D+DE  LLYRQLT S 
Sbjct: 475 ELSIVDYDDGDI-----------DDDENTLLYRQLTLSK 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489577|ref|XP_003615076.1| Quinolone resistance protein norA [Medicago truncatula] gi|355516411|gb|AES98034.1| Quinolone resistance protein norA [Medicago truncatula]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/524 (77%), Positives = 448/524 (85%), Gaps = 20/524 (3%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ET+TLVLVNLAGIME+ADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+SCYPI
Sbjct: 1   MKSETLTLVLVNLAGIMEKADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPI 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA RHNRAHVIALGAFLWAAATFLVAFSSTF QVA+SR LNGIGLALV PAIQSLVA
Sbjct: 61  AAYLATRHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLALVTPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDD+NRG+AFGWLQLT N+GS+VGGLFSV++AP+T  GI GWRISFH+VGLIS++VGT
Sbjct: 121 DSTDDNNRGMAFGWLQLTGNLGSVVGGLFSVLIAPITVFGIAGWRISFHVVGLISIIVGT 180

Query: 181 LVRLFANDPHFPDGGT--ANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS 238
           LV +FA DPHF D GT   +S+QV  ++F S V+ L+QEAKSV +I SFQIIVAQGVTGS
Sbjct: 181 LVFIFAKDPHFEDKGTLAKDSNQVPKETFWSGVRDLLQEAKSVSRISSFQIIVAQGVTGS 240

Query: 239 FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL 298
           FPWSALSFA MWLELTGFSH KTAFL+ALFV+ASS+GGLFGG+MGD LS   PNSGRIIL
Sbjct: 241 FPWSALSFAPMWLELTGFSHAKTAFLVALFVVASSVGGLFGGKMGDILSRHLPNSGRIIL 300

Query: 299 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS 358
           AQISS SAIPLAA+LLL LPDDPST + HGL+LV+ GLFISWN PATNNPIFAEIVPE+S
Sbjct: 301 AQISSGSAIPLAAILLLGLPDDPSTALSHGLMLVILGLFISWNGPATNNPIFAEIVPERS 360

Query: 359 RTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKAL 418
           RTSVYA+DRSFESILSSFAPP VGIL+QHVYG+KPIPKGSSA++EI TDR NA+SLAK+L
Sbjct: 361 RTSVYALDRSFESILSSFAPPAVGILSQHVYGYKPIPKGSSASQEILTDRENASSLAKSL 420

Query: 419 YTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSE 478
           YTAIGIPMALCC IYSFLY TYPRDRERARMEALIESEMQ +ES  L            +
Sbjct: 421 YTAIGIPMALCCLIYSFLYKTYPRDRERARMEALIESEMQHIESDGLVV---------DK 471

Query: 479 SEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
           SE LS+ +      D D E         E ILLYRQLTFSNL +
Sbjct: 472 SEELSIGDYDGDGGDLDDE---------ENILLYRQLTFSNLAD 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090607|emb|CBI40991.3| unnamed protein product [Vitis vinifera]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/522 (74%), Positives = 452/522 (86%), Gaps = 1/522 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           M+ ET+TL+LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+SCYP+
Sbjct: 1   MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA  HNRAHVIALGAFLWAAATFLVA SSTF QVA+SR LNGIGLA+V PAIQSL+A
Sbjct: 61  AAYLATHHNRAHVIALGAFLWAAATFLVAISSTFFQVAVSRGLNGIGLAIVTPAIQSLIA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DST+D NRGVAFGWLQLT N+GS++GGL SV++A  +FMGIPGWR++FH+VG+ISV+VG 
Sbjct: 121 DSTEDHNRGVAFGWLQLTGNLGSIIGGLCSVLIASTSFMGIPGWRVAFHLVGVISVIVGI 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LVRLFA DPHF DG     D++ SK F S+VK L++EAKSVI+IPSFQIIVAQGV+GSFP
Sbjct: 181 LVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEAKSVIRIPSFQIIVAQGVSGSFP 240

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLEL GFSH+KTAFLM LFVI+ S+GGLFGG+MGD L+ R PNSGRIIL+Q
Sbjct: 241 WSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLFGGKMGDVLAKRLPNSGRIILSQ 300

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS S +PLA +LLL+LPDDPST  MHGLVL + GL ISWN  ATNNPIFAEIVPEKSRT
Sbjct: 301 ISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCISWNPAATNNPIFAEIVPEKSRT 360

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           SVYA+DRSFESIL+SFAPPVVGIL+Q VYG+KPIP+GS+ + +I TDR NAASLAKALYT
Sbjct: 361 SVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGSTDSAQIETDRENAASLAKALYT 420

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AI IP  +CC IYSFLY TYPRDRERARM+ALI+SEMQQ++   LP+  EYS + FSE++
Sbjct: 421 AISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQQMDRDELPSGEEYSQLHFSETK 480

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
             + K R+VIE++Y  E+ LD+DDND+K LL  Q  FS+LGE
Sbjct: 481 EPNDKERSVIEIEYGDEN-LDVDDNDKKTLLPNQQKFSHLGE 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439014|ref|XP_002262789.1| PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/522 (74%), Positives = 452/522 (86%), Gaps = 1/522 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           M+ ET+TL+LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+SCYP+
Sbjct: 6   MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 65

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA  HNRAHVIALGAFLWAAATFLVA SSTF QVA+SR LNGIGLA+V PAIQSL+A
Sbjct: 66  AAYLATHHNRAHVIALGAFLWAAATFLVAISSTFFQVAVSRGLNGIGLAIVTPAIQSLIA 125

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DST+D NRGVAFGWLQLT N+GS++GGL SV++A  +FMGIPGWR++FH+VG+ISV+VG 
Sbjct: 126 DSTEDHNRGVAFGWLQLTGNLGSIIGGLCSVLIASTSFMGIPGWRVAFHLVGVISVIVGI 185

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LVRLFA DPHF DG     D++ SK F S+VK L++EAKSVI+IPSFQIIVAQGV+GSFP
Sbjct: 186 LVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEAKSVIRIPSFQIIVAQGVSGSFP 245

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLEL GFSH+KTAFLM LFVI+ S+GGLFGG+MGD L+ R PNSGRIIL+Q
Sbjct: 246 WSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLFGGKMGDVLAKRLPNSGRIILSQ 305

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS S +PLA +LLL+LPDDPST  MHGLVL + GL ISWN  ATNNPIFAEIVPEKSRT
Sbjct: 306 ISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCISWNPAATNNPIFAEIVPEKSRT 365

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           SVYA+DRSFESIL+SFAPPVVGIL+Q VYG+KPIP+GS+ + +I TDR NAASLAKALYT
Sbjct: 366 SVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGSTDSAQIETDRENAASLAKALYT 425

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AI IP  +CC IYSFLY TYPRDRERARM+ALI+SEMQQ++   LP+  EYS + FSE++
Sbjct: 426 AISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQQMDRDELPSGEEYSQLHFSETK 485

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
             + K R+VIE++Y  E+ LD+DDND+K LL  Q  FS+LGE
Sbjct: 486 EPNDKERSVIEIEYGDEN-LDVDDNDKKTLLPNQQKFSHLGE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099933|ref|XP_002334427.1| predicted protein [Populus trichocarpa] gi|222872190|gb|EEF09321.1| predicted protein [Populus trichocarpa]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/522 (76%), Positives = 450/522 (86%), Gaps = 2/522 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MKQET+TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+SCYP+
Sbjct: 1   MKQETLTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA+ HNRAHVIALGAFLWAAATFLVA SSTF +VA+SR LNGIGLA+V PAIQSLVA
Sbjct: 61  AAYLAVHHNRAHVIALGAFLWAAATFLVAISSTFLEVAVSRGLNGIGLAIVTPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTD+SNRG+AFGWLQLT N+GS++GGL SV++A  TFMGIPGWR++FH+VG+ISV+VG 
Sbjct: 121 DSTDESNRGMAFGWLQLTGNLGSIIGGLCSVLIASRTFMGIPGWRVAFHLVGIISVIVGI 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           +VRLFANDP F D  +   DQ S KSF S+VK L++EAKSVIKIPSFQIIVAQGV+GSFP
Sbjct: 181 MVRLFANDPRFSDTNSKAKDQ-SPKSFISEVKYLMKEAKSVIKIPSFQIIVAQGVSGSFP 239

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLEL GFSHEKTAFLM LFV+A SLGGLFGG+MGD L+ RFPNSGRI L+Q
Sbjct: 240 WSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFGGKMGDVLAKRFPNSGRIFLSQ 299

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS SAIPLAA+LLLVLPDDPST  +HGLVL + G  ISWN PATNNPIFAEIVP+KSR 
Sbjct: 300 ISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCISWNGPATNNPIFAEIVPQKSRA 359

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           SVYA+DRSFES+LSSFAPP VGILAQHVYG+K  PK S  + ++ TDR NAASLAKALYT
Sbjct: 360 SVYALDRSFESVLSSFAPPTVGILAQHVYGYK-TPKKSLDSVQVITDRENAASLAKALYT 418

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AIGIPMALCCFIYSFLY TYPRDR+RARM ALIE EMQQLE+ + P   E++ +  SE+ 
Sbjct: 419 AIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQLEADDSPLREEHTRLNVSETN 478

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE 522
            L  + RT I+M     + +D DD+D+K LLYRQLTFSNL +
Sbjct: 479 GLDGEERTEIDMKTGNNESIDFDDDDDKALLYRQLTFSNLAD 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451621|ref|XP_004143560.1| PREDICTED: protein spinster-like [Cucumis sativus] gi|449496531|ref|XP_004160158.1| PREDICTED: protein spinster-like [Cucumis sativus]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/519 (72%), Positives = 435/519 (83%), Gaps = 1/519 (0%)

Query: 1   MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
           MK ETVTL+LVNLA IMER DESLLPGVYKEVGAALH DPTGLGSLTLFRS+VQ+SCYP+
Sbjct: 1   MKSETVTLILVNLAAIMERTDESLLPGVYKEVGAALHIDPTGLGSLTLFRSVVQSSCYPL 60

Query: 61  AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
           AAYLA+ HNRAHVIA+GAFLWAAATFLVA SSTF QVAISR LNGIGLA+V PAIQSLVA
Sbjct: 61  AAYLAVHHNRAHVIAVGAFLWAAATFLVALSSTFFQVAISRGLNGIGLAIVIPAIQSLVA 120

Query: 121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
           DSTDDSNRG+AFGWLQLT N+GS++GGL S++MA  +FMGIPGWRI+FH+VGLISV+VG 
Sbjct: 121 DSTDDSNRGLAFGWLQLTGNLGSIIGGLCSILMASTSFMGIPGWRIAFHLVGLISVIVGL 180

Query: 181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
           LV +FANDPHF +    + D    K F S++  L++E+KSVI I SFQIIV+QGV GSFP
Sbjct: 181 LVWVFANDPHFSEINGRDKDH-PRKPFWSEMMDLVKESKSVIGIQSFQIIVSQGVAGSFP 239

Query: 241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 300
           WSALSFA MWLEL GFSHEKT FL  LF+IASSLGG+FGGR+GD LS RFPNSGRI+L+Q
Sbjct: 240 WSALSFAPMWLELVGFSHEKTGFLWTLFIIASSLGGIFGGRLGDILSKRFPNSGRIVLSQ 299

Query: 301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
           ISS SA+PLAA+LLLVLPD+PST  +HGLVL + G  +SWNAPATNNPIFAEIVP+KSRT
Sbjct: 300 ISSASAVPLAAILLLVLPDNPSTTFLHGLVLFIMGFSMSWNAPATNNPIFAEIVPKKSRT 359

Query: 361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
           S+YA+DRSFESILSSFAPPVVGILAQHVYG+KP  KGS+ + +I TDR NA SLA+ALY 
Sbjct: 360 SIYALDRSFESILSSFAPPVVGILAQHVYGYKPAAKGSTDSSQIETDRENAKSLARALYA 419

Query: 421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 480
           AIG PM+LCCFIYSFLY +YPRDRERARM ALIESEM  LESS  P   + S    SE++
Sbjct: 420 AIGFPMSLCCFIYSFLYCSYPRDRERARMHALIESEMLHLESSTSPLYEQDSQFHISEAK 479

Query: 481 VLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSN 519
               K++T +++ Y+ ED LD  D+DEK LL  QL  S+
Sbjct: 480 DFDDKDQTEVDLTYEIEDSLDFIDSDEKQLLNHQLIDSD 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	522
TAIR|locus:2194749	490	UNE2 "AT1G78130" [Arabidopsis	0.900	0.959	0.751	1.2e-186
TAIR|locus:2184163	488	AT5G10190 "AT5G10190" [Arabido	0.877	0.938	0.678	2.7e-164
TAIR|locus:2115430	489	AT4G36790 "AT4G36790" [Arabido	0.854	0.912	0.416	5.1e-90
TAIR|locus:2046313	473	AT2G18590 "AT2G18590" [Arabido	0.858	0.947	0.362	2.2e-73
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.519	0.447	0.252	4e-12
GENEDB_PFALCIPARUM|PF14_0260	809	PF14_0260 "metabolite/drug tra	0.431	0.278	0.209	2.9e-09
UNIPROTKB|Q8ILI3	809	PF14_0260 "Metabolite/drug tra	0.431	0.278	0.209	2.9e-09
WB|WBGene00008598	483	F09A5.1 [Caenorhabditis elegan	0.521	0.563	0.240	2.8e-08
UNIPROTKB|F1NJ05	484	SPNS3 "Uncharacterized protein	0.340	0.367	0.265	9.3e-07
ZFIN|ZDB-GENE-030131-5843	579	spns2 "spinster homolog 2 (Dro	0.427	0.385	0.215	1.3e-06

TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1810 (642.2 bits), Expect = 1.2e-186, P = 1.2e-186
 Identities = 357/475 (75%), Positives = 403/475 (84%)

Query:     1 MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
             MK ET+TL+LVNLAGIMERADESLLPGVYKEVG ALHTDPTGLGSLTL RS+VQA+CYP+
Sbjct:     1 MKAETMTLLLVNLAGIMERADESLLPGVYKEVGLALHTDPTGLGSLTLLRSMVQAACYPL 60

Query:    61 AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
             AAY+AIRHNRAHVIALGAFLW+AATFLVAFSSTF QVA+SRALNGIGLALVAPAIQSLVA
Sbjct:    61 AAYMAIRHNRAHVIALGAFLWSAATFLVAFSSTFFQVAVSRALNGIGLALVAPAIQSLVA 120

Query:   121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
             DSTDD+NRG AFGWLQLT+NIGS++GGL SV++AP+TFMGIPGWR++FHIVG+ISV+VG 
Sbjct:   121 DSTDDANRGTAFGWLQLTANIGSILGGLCSVLIAPLTFMGIPGWRVAFHIVGVISVIVGV 180

Query:   181 LVRLFANDPHFPDGGTANSDQVSS-KSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF 239
             LVR+FANDPHF   G   S+Q  S K F ++VK L++EA +VIKI SFQIIVAQGVTGSF
Sbjct:   181 LVRVFANDPHFVKDGVDVSNQPGSRKPFCTEVKDLVREADTVIKIRSFQIIVAQGVTGSF 240

Query:   240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRXXXX 299
             PWSALSFA MWLEL GFSH KTAFLM LFV ASSLGGLFGG+MGDFLS R PNSGR    
Sbjct:   241 PWSALSFAPMWLELIGFSHGKTAFLMGLFVAASSLGGLFGGKMGDFLSTRLPNSGRIILA 300

Query:   300 XXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR 359
                                       +HGL+LV+ GLF+SWNAPATNNPIFAEIVPEKSR
Sbjct:   301 QISSASAIPLAAILLLVLPDDPSTAAIHGLILVLLGLFVSWNAPATNNPIFAEIVPEKSR 360

Query:   360 TSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALY 419
             TSVYA+D+SFESILSSFAPP+VGILAQHVYG+KPIP+GSS + EIATDR NAASLAKALY
Sbjct:   361 TSVYALDKSFESILSSFAPPIVGILAQHVYGYKPIPEGSSRSTEIATDRENAASLAKALY 420

Query:   420 TAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQL--ESSNLPAAVEYS 472
             T+IG+PMA CCFIYSFLY +YP DR+RARMEA I+SEM++L  ESSN    +E+S
Sbjct:   421 TSIGLPMAACCFIYSFLYRSYPLDRDRARMEAFIDSEMRELLPESSNRD--IEFS 473

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
 Identities = 312/460 (67%), Positives = 367/460 (79%)

Query:     1 MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPI 60
             MK ET+TLVLV LAGIMERADESLLPGVYKEVG ALH DPT LG+LTLFRSIVQ+SCYP+
Sbjct:     1 MKSETLTLVLVYLAGIMERADESLLPGVYKEVGDALHVDPTALGTLTLFRSIVQSSCYPL 60

Query:    61 AAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVA 120
             AAYL+ RHNRAHVIALGAFLWA ATFLVA S+TF QVA+SR LNGIGLA+V PAIQSLVA
Sbjct:    61 AAYLSSRHNRAHVIALGAFLWATATFLVAVSTTFFQVAVSRGLNGIGLAIVTPAIQSLVA 120

Query:   121 DSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT 180
             DSTDD NRG+AFGWL  TSNIGS++G + S++ A  +F G+ GWRI+F +V ++SV+VG 
Sbjct:   121 DSTDDYNRGMAFGWLGFTSNIGSILGYVCSILFASKSFNGVAGWRIAFLLVAVVSVIVGI 180

Query:   181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP 240
             LVRLFA DPH+ D        V  K F SD++ L++EAK VIKIPSFQI VAQGV+GSFP
Sbjct:   181 LVRLFATDPHYSDRKITK--HVKDKPFWSDIRDLLKEAKMVIKIPSFQIFVAQGVSGSFP 238

Query:   241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRXXXXX 300
             WSAL+FA +WLEL GFSH+ TA L+ LF I+ SLGGLFGG MGD L+ +FPN GR     
Sbjct:   239 WSALAFAPLWLELIGFSHKTTAVLVTLFTISCSLGGLFGGYMGDTLAKKFPNGGRIFLSQ 298

Query:   301 XXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 360
                                       HGLVLV+ GL ISWN  ATN PIFAEIVPE++RT
Sbjct:   299 VSSGSAIPLAAILLIGLPDDPSTAFSHGLVLVIMGLCISWNGAATNGPIFAEIVPERART 358

Query:   361 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 420
             S+YA+DRSFESIL+SFAPP+VG+LAQ++YG+KPIP+GS+++ +I TDRANAASLAKALYT
Sbjct:   359 SIYALDRSFESILASFAPPIVGMLAQNIYGYKPIPEGSTSSVKIDTDRANAASLAKALYT 418

Query:   421 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQL 460
             +IGIPM +CC IYSFLY TYPRDR+RA+M+ALIESEMQQL
Sbjct:   419 SIGIPMVICCTIYSFLYCTYPRDRDRAKMQALIESEMQQL 458

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 189/454 (41%), Positives = 269/454 (59%)

Query:     5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYL 64
             +++L+L+NLA IMERADE+LLP VYKEV  A +  P+ LG LT  R+ VQ    P+A  L
Sbjct:    42 SISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGLASPLAGVL 101

Query:    65 AIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTD 124
              I ++R  V+A+G F WA +T  V  SS F QVA+ RA+NG GLA+V PA+QS +ADS  
Sbjct:   102 VITYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQSFIADSYK 161

Query:   125 DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL 184
             D  RG  FG L L   IG + GG+ + VMA   F GIPGWR +F ++  +S V+G LV L
Sbjct:   162 DGARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALSAVIGLLVFL 221

Query:   185 FANDPHFP-DGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSA 243
             F  DP    +     + +++S S  +D    +  AKSV+K+ +FQIIVAQG+ GSFPW+A
Sbjct:   222 FVVDPRKNIEREELMAHKMNSNSVWNDS---LAAAKSVVKVSTFQIIVAQGIIGSFPWTA 278

Query:   244 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRXXXXXXXX 303
             + F  MW EL GF H +TA L+ +F    ++G L GG + D +S  +PNSGR        
Sbjct:   279 MVFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKMSRIYPNSGRVMCAQFSA 338

Query:   304 XXXXXXXXXXXXXXXXXXXXXVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY 363
                                   +  + L + GL I+W   A N P+FAE+VP + RT +Y
Sbjct:   339 FMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNAPMFAEVVPPRHRTMIY 398

Query:   364 AMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIG 423
             A DR+FE   SSFA P+VGIL++ ++G+    +G    +  +   A+A  L+K L + + 
Sbjct:   399 AFDRAFEGSFSSFAAPLVGILSEKLFGYDS--RGIDPLKGSSVREADA--LSKGLLSMMA 454

Query:   424 IPMALCCFIYSFLYSTYPRDRERARMEALIESEM 457
             +P  LCC  Y+ L+  + +DRE A++ +  E+EM
Sbjct:   455 VPFGLCCLCYTPLHFVFQKDRENAKIASSKETEM 488

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 169/466 (36%), Positives = 242/466 (51%)

Query:     5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYL 64
             +++L+++NLA +M+RADE L+P   KE+  A H   + +G L+  R+IVQ    P+A   
Sbjct:    12 SISLIIINLATMMQRADEKLIPSTAKELKEAFHAKLSDIGLLSFIRNIVQGLASPLAGLF 71

Query:    65 AIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTD 124
             AI ++R  V A G+F W ++T     S  F QV +  A NG+G A+V P +QS++ADS  
Sbjct:    72 AISYDRPTVFAFGSFFWVSSTVATGVSRYFIQVTLGVAFNGVGHAIVYPVLQSIIADSFK 131

Query:   125 DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL 184
             +S+RG  FG   L   +G + G +   VMA   F GI GWR +F +   +S +VG LV  
Sbjct:   132 ESSRGFGFGLWNLIGTVGGIGGTVVPTVMAGHDFFGISGWRCAFILSATLSTIVGILVFF 191

Query:   185 FANDP----------HFPDGGTA--NSDQVSSKSFRSDV-KVLIQEAKSVIKIPSFQIIV 231
             F +DP          H  D      N+     +S  S V K      K V K+ +FQIIV
Sbjct:   192 FVSDPREKKTSSVIVHHDDQHERDENNGGTMMESPSSSVWKESWVAIKDVTKLRTFQIIV 251

Query:   232 AQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP 291
              QG+ GS PW+A+ F  MW EL GF H + A L  +F    ++G L GG + D +S  FP
Sbjct:   252 LQGIVGSVPWNAMLFWTMWFELIGFDHNQAALLNGIFATGQAIGSLVGGIIADKMSRVFP 311

Query:   292 NSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVVTGLFISWNAPATNNPIFA 351
             NSGR                              +  + L + GL I+W  PA N+PI A
Sbjct:   312 NSGRLICAQFSVFMGAMFSIVLLRMIPQSVNSFYIFLVTLFLMGLTITWCGPAINSPILA 371

Query:   352 EIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANA 411
             EIVP K RT VYA DR+ E   SSF  P+VGI+++ ++GF    KG    + +      A
Sbjct:   372 EIVPAKHRTMVYAFDRALEVTFSSFGAPLVGIMSEKLFGFDA--KG---IDHVNDSGREA 426

Query:   412 ASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEM 457
              +L K +   + +P  LCC  Y+ L+  + +DR+  R  +  E EM
Sbjct:   427 EALGKGIMWMMALPFGLCCLCYTPLHFLFRKDRKIDRTTSSREVEM 472

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
 Identities = 72/285 (25%), Positives = 119/285 (41%)

Query:     5 TVT-LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAY 63
             TVT L  VNL   M+R     + GV  +V           G L     I    C PI  Y
Sbjct:   116 TVTVLCFVNLINYMDRFT---IAGVLTDVRNDFDIGNDSAGLLQTVFVISYMVCAPIFGY 172

Query:    64 LAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADST 123
             L  R++R  ++A+G  LW+  T L +F   F      RAL GIG A  +    ++++D  
Sbjct:   173 LGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAFRALVGIGEASYSTIAPTIISDLF 232

Query:   124 DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR 183
                 R            +GS   GL  +V +    +    WR +  +  ++ +V   L+ 
Sbjct:   233 VHDMRSKMLALFYFAIPVGS---GLGYIVGSKTAHLA-NDWRWALRVTPILGIVAVFLI- 287

Query:   184 LFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSA 243
             L   DP    G +  S  + + +++ D+K L++    ++    F  +    V G+  W  
Sbjct:   288 LLIKDP--VRGHSEGSHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAF--VAGALAWWG 343

Query:   244 LSFAAMWLELTGFSHEKTAFLMAL-FVIASSLGGLFGGRMGDFLS 287
              SF  + +++   +       +A  F + + L GL G  +G FLS
Sbjct:   344 PSFIYLGMKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLS 388

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

GENEDB_PFALCIPARUM|PF14_0260 PF14_0260 "metabolite/drug transporter" [Plasmodium falciparum (taxid:5833)]

 Score = 127 (49.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 49/234 (20%), Positives = 92/234 (39%)

Query:   215 IQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSL 274
             + E K V K  SF +++  G+    P   LS    + +    S  K+ F++++  + +SL
Sbjct:   575 LYEIKYVFKNYSFWLMITMGMLNGIPKHVLSLMIYFFQYCNISDFKSGFIISVSWLCASL 634

Query:   275 GGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVVT 334
                F G + D++     +  R                             +   ++ +  
Sbjct:   635 ISPFIGIISDYIYKLNKDINRQRIGMYTHCFRIFLMFTLFYFIPKEATSFIYFVIISLFM 694

Query:   335 GLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG-ILAQHVYG-FK 392
             G+   W    T+ PI  +IV ++    + A+  +FE+I SS    ++G  L  H+   + 
Sbjct:   695 GILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSHLLNKYD 750

Query:   393 PIPKGSSATE-EIATDRANAASLAKALYTAIGIPMALC-CFIYSFLYSTYPRDR 444
              I K    T   +  ++ N   L+  L      P  L  C +Y+  Y TY +D+
Sbjct:   751 YIDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILI3 PF14_0260 "Metabolite/drug transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 127 (49.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 49/234 (20%), Positives = 92/234 (39%)

Query:   215 IQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSL 274
             + E K V K  SF +++  G+    P   LS    + +    S  K+ F++++  + +SL
Sbjct:   575 LYEIKYVFKNYSFWLMITMGMLNGIPKHVLSLMIYFFQYCNISDFKSGFIISVSWLCASL 634

Query:   275 GGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVVT 334
                F G + D++     +  R                             +   ++ +  
Sbjct:   635 ISPFIGIISDYIYKLNKDINRQRIGMYTHCFRIFLMFTLFYFIPKEATSFIYFVIISLFM 694

Query:   335 GLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG-ILAQHVYG-FK 392
             G+   W    T+ PI  +IV ++    + A+  +FE+I SS    ++G  L  H+   + 
Sbjct:   695 GILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSHLLNKYD 750

Query:   393 PIPKGSSATE-EIATDRANAASLAKALYTAIGIPMALC-CFIYSFLYSTYPRDR 444
              I K    T   +  ++ N   L+  L      P  L  C +Y+  Y TY +D+
Sbjct:   751 YIDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00008598 F09A5.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 75/312 (24%), Positives = 139/312 (44%)

Query:     2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSL-TLFR-SIVQASCYP 59
             +++ +++V++ +  ++   D   + GV  +V +  + + +  G + T+F  S +  S  P
Sbjct:     5 RKDYISIVILFVVNLINNVDRYTIAGVLPDVQSYYNINDSMGGMIQTVFLISFMIGS--P 62

Query:    60 IAAYLAIRHNRAHVIALGAFLW----AAATFLVAFSSTFAQVAISRALNGIGLALVAPAI 115
             I  YL  R NR +V+ +G  +W     A+TF+    + F      R+L GIG A      
Sbjct:    63 ICGYLGDRFNRKYVMLVGIVIWLICVCASTFIPR--NLFPLFLFFRSLVGIGEASYVNIC 120

Query:   116 QSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLIS 175
              ++++D      R   +    L   +GS +G + S  ++ +T  G   W+    + G I 
Sbjct:   121 PTMISDMFTSDKRTRVYMLFYLAVPVGSGLGYIISSNVSSLT--G--SWQWGVRVTG-IG 175

Query:   176 VVVGTLVRLFANDPHFPDGGTANS----DQV--SSKSFRSDVKVLIQEAKSVIKIPSFQI 229
              +V  L  LF    H P+ G A      D     S S+  D+KVL++    V+   ++  
Sbjct:   176 GIVALLALLFM--VHEPERGAAEKLEGKDTTVRPSTSYWKDLKVLLKCPTYVVTTLAYTA 233

Query:   230 IVAQGVTGSFPW---SALSFAAMWL-------ELT-GFSHEKTAFLMALFVIASSLGGLF 278
             ++   V+G+  W   + + ++A W        EL   F +E T  +  L   A    G+ 
Sbjct:   234 LIF--VSGTLTWWMPTIIEYSAAWTRGYKSIKELPLSFKNE-TGLIFGLLTTAC---GII 287

Query:   279 GGRMGDFLSARF 290
             G  +G+ L+  F
Sbjct:   288 GTLLGNLLAQCF 299

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NJ05 SPNS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
 Identities = 52/196 (26%), Positives = 91/196 (46%)

Query:     2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQASCYPI 60
             K++ + + ++  A ++   D  ++PG+  ++           G L T+F  I+   CY +
Sbjct:    46 KRDYLIVGVLCYANLINFMDWFIVPGILLDIQKYFDLSDGAAGLLQTVF--IL---CYML 100

Query:    61 AA----YLAIRHNRAHVIALGAFLWAAATFLVAF-SSTFAQVA-ISRALNGIGLALVAPA 114
             AA    YL  R+NR  +I  G F W+A T   +F S ++  +  +SR L GIG A  +  
Sbjct:   101 AAPFFGYLGDRYNRKAIIGAGIFFWSAVTLGTSFISESYYWIFFLSRGLVGIGTASYSTV 160

Query:   115 IQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLI 174
               +++AD  D+  R        +   +GS +G + +  MA +T  G   W  +F +   +
Sbjct:   161 APTIIADRFDEGKRTTMLSVFYICIPMGSGLGYVLASSMAHVT--G--DWHWAFRVTPCM 216

Query:   175 SVVVGTLVRLFANDPH 190
               +   LV L    PH
Sbjct:   217 GGLA--LVLLILLVPH 230

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-030131-5843 spns2 "spinster homolog 2 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 50/232 (21%), Positives = 96/232 (41%)

Query:    10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQASCYPIAAYLAIRH 68
             +++   ++   D   + GV  ++        +  G L T+F      +  PI  YL  R 
Sbjct:    60 ILSFGNVLNYMDRYTVAGVLLDIQKQFKVGDSSAGLLQTVFICSFMVAA-PIFGYLGDRF 118

Query:    69 NRAHVIALGAFLWAAATFLVAFSST--FAQVAISRALNGIGLALVAPAIQSLVADSTDDS 126
             NR  +++ G F W+A T L +F +   +  + +SR L GIG +  +    +++ D   ++
Sbjct:   119 NRKIILSCGIFFWSAVTLLSSFITKEYYWLLVLSRCLVGIGESSYSSISPTIIGDLFTNN 178

Query:   127 NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFA 186
              R V      L   +GS +G +   +       G   W  +  +  ++ +  GTL+ +F 
Sbjct:   179 KRTVMLSVFYLAIPLGSGLGYILGSIAKDAG--G--HWYWALRVSPMLGLTAGTLILIFV 234

Query:   187 NDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIK-IPSFQIIVAQGVTG 237
             ++P             +  S+  D+K L +    V   + S  +  A G  G
Sbjct:   235 SEPKRGSADQPGGRLKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFG 286

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001944 "vasculature development" evidence=IGI

GO:0001569 "patterning of blood vessels" evidence=IDA

GO:0003376 "sphingosine-1-phosphate signaling pathway" evidence=IMP

GO:0061035 "regulation of cartilage development" evidence=IMP

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	522
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-29
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-23
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-14
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-13
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-13
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-09
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	1e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	9e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-05
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	4e-05
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	4e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	6e-04
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	0.001
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.002
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  118 bits (298), Expect = 2e-29
 Identities = 83/367 (22%), Positives = 153/367 (41%), Gaps = 24/367 (6%)

Query: 13  LAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRA 71
           LA  +     SLL       +   L   PT +G L    S+  A   P+A  L+ R  R 
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62

Query: 72  HVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVA 131
            V+ +G  L+A    L+ F+S+   + + R L G+G   + PA  +L+AD      RG A
Sbjct: 63  RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 132 FGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHF 191
            G L     +G+ +G L   ++A      + GWR +F I+ +++++   L  L    P  
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLA-----SLFGWRAAFLILAILALLAAVLAALLLPRPPP 177

Query: 192 PDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWL 251
                        K        L+   K +++ P   +++A  + G   ++ L++  ++ 
Sbjct: 178 ESKR--------PKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ 229

Query: 252 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA 311
           E+ G S      L+ L  +  ++G L  GR+ D L  R      ++L          + A
Sbjct: 230 EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL---------ILA 280

Query: 312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES 371
            L L L     + +   + L++ G       PA N  + +++ P++ R +   +  +  S
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGS 339

Query: 372 ILSSFAP 378
           +  +  P
Sbjct: 340 LGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  101 bits (254), Expect = 2e-23
 Identities = 84/383 (21%), Positives = 148/383 (38%), Gaps = 57/383 (14%)

Query: 8   LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR 67
           L+L+ L   +   D  LL      +   L    +  G +    S+  A    +A YL+ R
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 68  HNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSN 127
             R  V+ LG  L+A  + L+AF+S+   + + R L G+G   + PA  +L+A+      
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 128 RGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN 187
           RG A G       +G+L+G L   ++A        GWR  F I+ ++ +++  L+     
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESL-----GWRWLFLILAILGLLLALLLLFL-- 173

Query: 188 DPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALS-- 245
                                               +    ++       SF +  L   
Sbjct: 174 ------------------------------------LRLLLLLALAFFLLSFGYYGLLTY 197

Query: 246 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS 305
                 E+ G S  +   L++LF +   LG L GG + D L       GR  L  +  L 
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-------GRRRLLLLIGLL 250

Query: 306 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM 365
              L  LLL + P    +  +  + L++ G  + +  PA      +E+ P ++R +   +
Sbjct: 251 LAALGLLLLALAP----SLALLLVALLLLGFGLGFAFPALLTLA-SELAPPEARGTASGL 305

Query: 366 DRSFESILSSFAPPVVGILAQHV 388
             +F S+  +  P + G+L    
Sbjct: 306 FNTFGSLGGALGPLLAGLLLDTG 328

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 67/280 (23%), Positives = 105/280 (37%), Gaps = 31/280 (11%)

Query: 63  YLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADS 122
            LA R  R  V+     L++  T L A ++   Q+ I R L G+GL  + P + +LV++ 
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 123 TDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV 182
                RG A G +     IG+ VGG  +  + P+      GWR  F++ G+  +++  L+
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLLLLLLL 188

Query: 183 RLFANDP------------HFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII 230
             F  +                    A   Q  ++S   + K      +SV K   FQ  
Sbjct: 189 MRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA-LFQGK 247

Query: 231 VAQG-----VTGSFPWSALSFAAMWLEL----TGFSHEKTAFLMALFVIASSLGGLFGGR 281
            A+      +        + F   WL       GFS    A   ALF     +G +  G 
Sbjct: 248 TARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307

Query: 282 MGDFLSAR----FPNSGRIILAQISSLSAIPLAALLLLVL 317
           + D L  R        G +    + S    P   LLL  +
Sbjct: 308 LADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 52  IVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALV 111
           + Q    P++  L  R  R  V+ +G F++  +T + A SS    + I+R L G G A  
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 112 APAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIV 171
             A  +L+AD      RGVA G +     +G L+G     V+A        GWR  F  +
Sbjct: 69  LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----GWRAPFLFL 123

Query: 172 GLISVVVGTLV 182
            ++++    L+
Sbjct: 124 AILALAAFILL 134

Length = 141

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 82/373 (21%), Positives = 138/373 (36%), Gaps = 45/373 (12%)

Query: 41  TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAIS 100
           T LG L    SI       +   ++ R N    + +G  L A       FS++   +A  
Sbjct: 30  TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAAL 89

Query: 101 RALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG 160
            ALNGI   +  P     V      S RG    +   + N+G   G L  +V+  +  + 
Sbjct: 90  WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG--GLLPPLVLFGIAELY 147

Query: 161 IPGWRISFHIVGLISVVVGTLVRLFANDP--------------HFPDGGTANSDQVSSKS 206
              W   F + G+I+++V  +  L   D                 PDG     ++  +K 
Sbjct: 148 --SWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKK 205

Query: 207 FRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMA 266
                 VL+   K +  I    + V    TG   WS L       +  GFS EK ++   
Sbjct: 206 QIFLQYVLLN--KVLWYISLGYVFVYVVRTGILDWSPLYL----TQEKGFSKEKASWAFT 259

Query: 267 LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM 326
           L+ +   +G L  G    +LS +  N  R  LA +  ++ I ++ L+  + P   + P+M
Sbjct: 260 LYELGGLVGTLLAG----WLSDKLFNGRRGPLA-VFFMALIIVSLLVYWLNPA--ANPLM 312

Query: 327 HGLVLVVTGLFISWNAPATNNPIF------AEIVPEKSRTSVYAMDRSFESILSSFAPPV 380
             + L   G  +         P        +E+ P+K+  +       F  +    A   
Sbjct: 313 DLICLFALGFLV-------YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365

Query: 381 VGILAQHVYGFKP 393
           +G LA   +G+  
Sbjct: 366 LGYLADG-FGWAG 377

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 32/298 (10%)

Query: 21  DESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL 80
            E +  G+   + A L       G L    ++  A   P+ A L  R  R  ++     L
Sbjct: 28  TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87

Query: 81  WAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSN 140
           +  +  L A + +FA + ++RAL G+   +      +L A       RG A   L  T  
Sbjct: 88  FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALA-LVFTGL 146

Query: 141 IGSLVGGLFSVVMAPM-TFMG-IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN 198
             + V G       P+ TF+G + GWR +F  + +++++   L+         P    + 
Sbjct: 147 TLATVLG------VPLGTFLGQLFGWRATFLAIAVLALLALLLLWKL-----LPPSEISG 195

Query: 199 SDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWL-ELTGFS 257
           S        R+ +++L         +    +     +TG F  +  ++   +L  + GFS
Sbjct: 196 S---LPGPLRTLLRLL-----RRPGVLLGLLATFLFMTGHF--ALYTYIRPFLESVAGFS 245

Query: 258 HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL 315
               + ++  F IA  +G L GGR+ D    R        L     L A+ L AL   
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADRGPRR-------ALIAALLLLALALLALTFT 296

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 6/153 (3%)

Query: 35  ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFLWAAATFLVAFSST 93
            L       G L     +       +   L+ R   R  ++ +G  L A    L+A + +
Sbjct: 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264

Query: 94  FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM 153
            A + ++  L G GL    PA+ +L ++      RG A G      ++G  +G L + ++
Sbjct: 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324

Query: 154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFA 186
                +   G+   F I+  ++++   L+ L  
Sbjct: 325 -----LDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 41/299 (13%)

Query: 60  IAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLV 119
           +   L+ R N  + +A G  L A    L  FS +    A+   LNG    +  P     +
Sbjct: 83  VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142

Query: 120 ADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVG 179
                   RG  +     + NIG   G L  +V     F    GWR +F+  G+I+++V 
Sbjct: 143 THWFSRKERGTWWSIWNTSHNIG---GALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199

Query: 180 TLV-RLFANDPH---FPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV 235
            ++  L  + P     P              +R D   + +E K    + ++QI V   +
Sbjct: 200 LILLFLLRDRPQSEGLPPIEE----------YRGDPLEIYEEEKENEGLTAWQIFVKYVL 249

Query: 236 TGSFPWSALSFAAM-----------W-----LELTGFSHEKTAFLMALFVIASSLGGLFG 279
                W  L+ A +           W      E+ GFS  K  + ++LF +A   G L  
Sbjct: 250 KNKLIW-LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLA 308

Query: 280 GRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI 338
           G    +LS +     R  +A    +  + + A L+L       + ++  ++L + G  I
Sbjct: 309 G----WLSDKLFKGRRGPMA---LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI 360

Length = 448

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 64/331 (19%), Positives = 120/331 (36%), Gaps = 20/331 (6%)

Query: 73  VIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAF 132
            +A+   +W   T L AF+  +  + I R L G   A   P I  +VA     S R  A 
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAV 120

Query: 133 GWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP 192
                   +G ++GG   V    + F     W+ +F I G++ ++ G L   F  DP   
Sbjct: 121 SIFNSAQGLGGIIGGPL-VGWILIHF----SWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175

Query: 193 DGGTANSDQ-------VSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSA-L 244
                  ++       ++ +  +        + K ++K      +       +      L
Sbjct: 176 AKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235

Query: 245 SFAAMWLELT-GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS 303
           ++   +L    G S  +  F+ +L  I   +G + GGR+ D L  R  +   ++ A+ ++
Sbjct: 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS---LVFARKTA 292

Query: 304 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY 363
           + A  + +LL+     +        L LV  G F           + ++  P        
Sbjct: 293 IIAGLVLSLLMFAT--NYVNIPYAALALVALGFFGLGAGAIG-WALISDNAPGNIAGLTG 349

Query: 364 AMDRSFESILSSFAPPVVGILAQHVYGFKPI 394
            +  S  ++     P V+G +A     F   
Sbjct: 350 GLINSLGNLGGIVGPIVIGAIAATTGSFAGA 380

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 60  IAAYLAIRHNRAHVIALGAFLWAAATFLVAFS--STFAQVAISRALNGIGLALVAPAIQS 117
            A  L  R  R   + +G  L+     L  F+   +F  + + R + G+G+  ++  +  
Sbjct: 65  FAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPM 124

Query: 118 LVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVV 177
            +++      RG      QL    G LV  +  + +    +    GWRI   +  + +++
Sbjct: 125 YISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLN--KYSNSDGWRIPLGLQFVPAIL 182

Query: 178 V 178
           +
Sbjct: 183 L 183

Length = 449

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 58/344 (16%), Positives = 110/344 (31%), Gaps = 44/344 (12%)

Query: 63  YLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAIS--------RALNGIGLALVAPA 114
           +   R  R   + +   +    T L+    ++A + I         R + G  L      
Sbjct: 57  HFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGG 116

Query: 115 IQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGL----FSVVMAPMTFMGIPGWRISFHI 170
               +A+      RG    + Q+ + +G L+  L     S ++     +   GWRI F +
Sbjct: 117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPF-L 174

Query: 171 VGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII 230
           V  + V++G  +R    +   P    A              K         +       +
Sbjct: 175 VSAVLVLIGLYLRRNLEET--PVFEKAQEKH----------KKKRGPIAETLTKHRKPFL 222

Query: 231 VAQGVTGSFPWSALSFAAMWLELT---GFSHEKTAFLMALFVIASSLGGLFGGRM---GD 284
           +  G+         +    +L  T    +  +         ++   L  +          
Sbjct: 223 LGLGLV------IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSG 276

Query: 285 FLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA 344
            LS R    GR  +  I ++ A  LA  LL+ L D  S  +   LVL +  +   +  P 
Sbjct: 277 ALSDRI---GRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 345 TNNPIFAEIVPEKSRTSVYAMDRSFESIL-SSFAPPVVGILAQH 387
                  E+ P + R +  ++  +    +   FAP +   L   
Sbjct: 334 --GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 74/398 (18%), Positives = 132/398 (33%), Gaps = 51/398 (12%)

Query: 13  LAGIMERADESLLPGVYKEVGAALH---TDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN 69
           L  +++  D  L+  V  EV         D   L S  L      A    +      R+ 
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGAL---MFGLWGDRYG 75

Query: 70  RAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRG 129
           R   +     L++A T    F+  +  + I+R + GIG+     +  + V +S     R 
Sbjct: 76  RRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN 135

Query: 130 VAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP 189
            A G L     +G++V      ++ P    G  GWR  F I  ++ ++    +R      
Sbjct: 136 KASGLLISGYAVGAVVAAQVYSLVVP--VWGD-GWRALFFI-SILPIIFALWLRK----- 186

Query: 190 HFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAM 249
           + P+              R+ V +L    +  I      +  A   +    W   +F  +
Sbjct: 187 NIPEAEDWKEKHAGKALVRTMVDILYG-GEHRIANIVMTLAAAMVQSAGKRW--PTFVYL 243

Query: 250 WLELTGF---SHEKTAFL--------------MALFVIASSLGGLFGGRMGDFLSARFPN 292
            + +      SH     L              +A  V+ S++G + GG +  FL      
Sbjct: 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGR 303

Query: 293 S-GRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI--SWNA-PATNNP 348
               +       L  IP+ A+         +   + GL L    + +   W   P     
Sbjct: 304 RKAYVCSLLAGQLLIIPVFAI--------GANVAVLGLGLFFQQMLVQGIWGILPK---- 351

Query: 349 IFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ 386
              E  P   R +         ++  + AP +  +LAQ
Sbjct: 352 HLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 26/225 (11%)

Query: 64  LAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVAD-- 121
           L+ R+ R  V+ LG F++A ++  +A S+    + + R +   G +  +   Q+LV D  
Sbjct: 63  LSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIY 122

Query: 122 STDDSNRGVAF--GWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVG 179
             ++ +R  +     L L   +  L+GG   V +          W   F  + L  +++ 
Sbjct: 123 PGEELSRIYSILMPVLALAPAVAPLLGGYILVWL---------SWHAIFAFLSLAGILLS 173

Query: 180 TLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF 239
            L+     +    +     S             +L+ ++K       + +I      G F
Sbjct: 174 ALIFFILPETLPYEARIQISTYFE-------TFLLLLKSKMFW---GYALIYGASFGGFF 223

Query: 240 PW-SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMG 283
            + S   F  +++++ G S      L AL +IA   GG   GR  
Sbjct: 224 AFFSGAPF--VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFI 266

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 246 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS 305
                 E  G S  +   L+  F +  +L     GR+ D    R     R++L     + 
Sbjct: 19  LPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR-----RVLL-----IG 68

Query: 306 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM 365
            +  A  LLL+L       ++  ++ V+ GL      PA    + A+  P + R     +
Sbjct: 69  LLLFALGLLLLLFASSLWLLL--VLRVLQGLGGGALFPAAAA-LIADWFPPEERGRALGL 125

Query: 366 DRSFESILSSFAPPVVGILAQHV 388
             +   + ++  P + G+LA   
Sbjct: 126 LSAGFGLGAALGPLLGGLLASLF 148

Length = 346

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 58/273 (21%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 72  HVIALGAFLWAAATFLVAFS-STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGV 130
           +   L   L A        +  +++ + + R   GI     A      ++       +G 
Sbjct: 68  YTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASC-MPWISFFFPKKIQGT 126

Query: 131 AFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG--------WRISFHIV-GLISVVVGTL 181
           A G   L +  G++ GG+   VM P+    I G        W  +F IV   I ++   L
Sbjct: 127 ALG---LAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALL 183

Query: 182 VRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGVT-GSF 239
           +     D   P G  A        +  S     + +   V +     I+ +   VT GSF
Sbjct: 184 IFFVGAD--TPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSF 241

Query: 240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILA 299
              +  FA  + +  G S        +L  +  SL    GG + D L       G     
Sbjct: 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-------GGARKL 294

Query: 300 QISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 332
            +S L     A L++L L    S  V   L + 
Sbjct: 295 LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVA 327

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 18/156 (11%)

Query: 29  YKEVGAALHTDPTGLGSLTLFRSIVQASCY---PIAAYLAIRH-NRAHVIALGAFLWAAA 84
           Y ++G  L  D T   +  LF S   +  Y    I  +LA R       I LGA L A  
Sbjct: 49  YYQLGDGLGFDETH--ATGLF-SAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIG 105

Query: 85  TFLVAFSSTFAQ--VAISRALNGIGLALVAPAIQSLVAD--STDDSNRGVAFGWLQLTSN 140
             ++A SS      + I  AL  +G  L  P I SL+ +    DD  R   F    +  N
Sbjct: 106 HLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN 165

Query: 141 IGSLVGGLFSVVMAPMTFMGIPGWRISFHI--VGLI 174
           IGS    L + ++         GW + F +  VG+I
Sbjct: 166 IGS----LIAPIITG-LLAINYGWHVGFGLAAVGMI 196

Length = 498

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 7   TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI 66
           T+VL+ L   M   D +++      +   L +  + +  +     +  A   P+  +LA 
Sbjct: 4   TIVLM-LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62

Query: 67  RHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDS 126
           R     +  +  F +   + L   +     + I R + G G   + P   S + +     
Sbjct: 63  RFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE 122

Query: 127 NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHI---VGLISVVV 178
            RG A     LT  +   +G      +     +    WR  F I   +G+I VVV
Sbjct: 123 KRGRAMAIWGLTVLVAPALGPTLGGWI-----IENYHWRWIFLINVPIGIIVVVV 172

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 55/269 (20%), Positives = 96/269 (35%), Gaps = 43/269 (15%)

Query: 64  LAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADST 123
           LA R  R  ++ +   L+   +   A +  F  + ++R L G+GL    P + +L +++ 
Sbjct: 73  LADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV 132

Query: 124 DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLIS-VVVGTLV 182
               RG A   +      G  +  +  V+ A     G   WR  F++ G+   ++V  L+
Sbjct: 133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAA-----GDAAWRHIFYVGGVGPLLLVPLLM 187

Query: 183 RLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS--FP 240
           R       F                               + P  + +  +G   +    
Sbjct: 188 RWLPESRAFAQ----------------------AAGAGKQRAPVLRALFGEGRATATLLL 225

Query: 241 WSALSFAAM-------WLEL----TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSAR 289
           W +  F  +       WL       G S  +   +   F I  +LG L  G + D L  R
Sbjct: 226 WISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285

Query: 290 FPNSGRI--ILAQISSLSAIPLAALLLLV 316
                    ILA +++L+A P  A +LL 
Sbjct: 286 RVVLLIYAGILASLAALAAAPSFAGMLLA 314

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	522
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK12382	392	putative transporter; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.98
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.98
PRK11010	491	ampG muropeptide transporter; Validated	99.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.98
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.98
KOG2532	466	consensus Permease of the major facilitator superf	99.98
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
PRK10429	473	melibiose:sodium symporter; Provisional	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
PRK09669	444	putative symporter YagG; Provisional	99.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
PTZ00207	591	hypothetical protein; Provisional	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
COG2211	467	MelB Na+/melibiose symporter and related transport	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
PRK11462	460	putative transporter; Provisional	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.93
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.92
PF13347	428	MFS_2: MFS/sugar transport protein	99.92
PRK09848	448	glucuronide transporter; Provisional	99.92
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
KOG2563	480	consensus Permease of the major facilitator superf	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.9
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.85
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.81
KOG3626	735	consensus Organic anion transporter [Secondary met	99.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.77
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.76
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.68
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.62
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.59
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.55
PRK15011	393	sugar efflux transporter B; Provisional	99.55
PRK09528	420	lacY galactoside permease; Reviewed	99.54
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.53
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
PRK03545	390	putative arabinose transporter; Provisional	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.49
PRK12382	392	putative transporter; Provisional	99.49
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.49
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
PRK03699	394	putative transporter; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.4
PRK10504	471	putative transporter; Provisional	99.39
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.37
PRK09952	438	shikimate transporter; Provisional	99.36
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
PRK11663	434	regulatory protein UhpC; Provisional	99.34
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.34
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.33
PRK12307	426	putative sialic acid transporter; Provisional	99.32
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.29
TIGR00895	398	2A0115 benzoate transport.	99.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.28
KOG3762	618	consensus Predicted transporter [General function	99.28
PRK10054	395	putative transporter; Provisional	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.27
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.25
PRK11902	402	ampG muropeptide transporter; Reviewed	99.24
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.22
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.21
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.21
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.21
TIGR00898	505	2A0119 cation transport protein.	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.2
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.2
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.2
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.19
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.16
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.15
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.15
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.14
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.13
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.12
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.11
TIGR00901	356	2A0125 AmpG-related permease.	99.11
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.09
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.08
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.08
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.06
PRK10133	438	L-fucose transporter; Provisional	99.05
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.03
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.02
PRK09848	448	glucuronide transporter; Provisional	99.02
KOG0637	498	consensus Sucrose transporter and related proteins	99.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
KOG0569	485	consensus Permease of the major facilitator superf	99.0
PRK11043	401	putative transporter; Provisional	99.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.98
PF13347	428	MFS_2: MFS/sugar transport protein	98.97
COG0477	338	ProP Permeases of the major facilitator superfamil	98.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.95
PTZ00207	591	hypothetical protein; Provisional	98.93
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.92
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.91
PRK09669	444	putative symporter YagG; Provisional	98.9
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.89
KOG3762	618	consensus Predicted transporter [General function	98.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.83
PRK10429	473	melibiose:sodium symporter; Provisional	98.83
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.79
KOG2615	451	consensus Permease of the major facilitator superf	98.76
KOG2532	466	consensus Permease of the major facilitator superf	98.75
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.71
TIGR00805	633	oat sodium-independent organic anion transporter.	98.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.69
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.65
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.63
COG2211	467	MelB Na+/melibiose symporter and related transport	98.61
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.59
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.56
PRK11462	460	putative transporter; Provisional	98.56
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.54
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.53
PF12832	77	MFS_1_like: MFS_1 like family	98.5
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.46
KOG3810	433	consensus Micronutrient transporters (folate trans	98.46
COG3202	509	ATP/ADP translocase [Energy production and convers	98.45
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.44
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.44
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.43
KOG2533	495	consensus Permease of the major facilitator superf	98.37
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.31
KOG0254	513	consensus Predicted transporter (major facilitator	98.29
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.28
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.05
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.99
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.96
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.86
KOG2563	480	consensus Permease of the major facilitator superf	97.76
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.76
PF12832	77	MFS_1_like: MFS_1 like family	97.73
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	97.57
PRK03612	521	spermidine synthase; Provisional	97.5
KOG3880	409	consensus Predicted small molecule transporter inv	97.43
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.3
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.08
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.92
PRK03612	521	spermidine synthase; Provisional	96.91
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.81
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.8
KOG3097	390	consensus Predicted membrane protein [Function unk	96.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.47
COG0477	338	ProP Permeases of the major facilitator superfamil	96.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.1
KOG3626	735	consensus Organic anion transporter [Secondary met	96.04
KOG0637	498	consensus Sucrose transporter and related proteins	96.02
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.93
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.37
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.14
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.98
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.81
COG4262	508	Predicted spermidine synthase with an N-terminal m	93.75
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.94
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.64
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.33
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	90.49
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	89.68
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	87.49
KOG3880	409	consensus Predicted small molecule transporter inv	86.92
COG3202	509	ATP/ADP translocase [Energy production and convers	86.09
KOG2568	518	consensus Predicted membrane protein [Function unk	83.2
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	82.62
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	81.89

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5e-40  Score=299.47  Aligned_cols=399  Identities=18%  Similarity=0.214  Sum_probs=319.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      .|+.+++.+++++...++.+..++...|.+.++.++|.+|+|++.+++.+.+.++.++.|.++||.+.|+.+..++++.+
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH--HhhhcccccC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS--VVMAPMTFMG  160 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~--~~l~~~~~~~  160 (522)
                      +..++++++++.+.+.+..++.|..+|..+|++...+..|++++|||+..++.+...++|..+.|++.  +++..+    
T Consensus       106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~----  181 (448)
T COG2271         106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----  181 (448)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc----
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  888777    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC-----Cccc--ccchhhhhhHHHHHHhhhhhcchhHHHHHHH
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN-----SDQV--SSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ  233 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (522)
                       .+||..|++.++++++..++.++..+|.++...-.+.     +..+  ++++..+.......-.+.+++||.+|.+.+.
T Consensus       182 -~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a  260 (448)
T COG2271         182 -GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALA  260 (448)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHH
Confidence             7999999999999999999988876654332111100     0000  0000000011222334678999999988777


Q ss_pred             hhhccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          234 GVTGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       234 ~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      .++... =+++..|.|.|+. ..|+|..++++..+.+-++++.|.+++||++||+-+.++    .....+ ..+.+.+..
T Consensus       261 ~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR----~p~~~i-~~~~i~~~~  335 (448)
T COG2271         261 NVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR----GPMALI-FMLLITASL  335 (448)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc----chHHHH-HHHHHHHHH
Confidence            666655 4889999999996 599999999999999999999999999999999753321    112211 122222222


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHH-HhchhhHHHHHHHHHhhC
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~~~g  390 (522)
                      +.+..  ....+.++..++++.+|+......- ..-....|..|++-.|++.|+...+.++ |.+.+....|++.|. +|
T Consensus       336 ~~~w~--~~~~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~g  411 (448)
T COG2271         336 VLYWL--APNGSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WG  411 (448)
T ss_pred             HHHHc--CCCccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-CC
Confidence            22222  2233566778888899988777666 6777889999999999999999999999 888899999999998 78


Q ss_pred             cccCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914          391 FKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYST  439 (522)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (522)
                      |.                        +.+....+.++++.+++....+.
T Consensus       412 W~------------------------g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         412 WD------------------------GGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             Cc------------------------chHHHHHHHHHHHHHHHHHHHhh
Confidence            74                        44666666666666666555544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-37  Score=289.27  Aligned_cols=353  Identities=19%  Similarity=0.265  Sum_probs=288.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ..+..++.+.++.|..+....+...++|++.+++|+|..+.|++.++|.++..+++|+...+.||+.||++++..+.++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.     .
T Consensus        90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-----~  164 (394)
T COG2814          90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-----F  164 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-----h
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998     9


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc-cchh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG-SFPW  241 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  241 (522)
                      |||.+|++.++++++..+..+...+ |+...++.               ....++..+.+|+|..+......++. ...|
T Consensus       165 GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~---------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F  228 (394)
T COG2814         165 GWRATFLAIAVLALLALLLLWKLLP-PSEISGSL---------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHF  228 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCC---------------CcchhHHHHHhcCchHHHHHHHHHHHHcchh
Confidence            9999999999999999888877554 22211111               11112334567777777665544444 4467


Q ss_pred             HHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          242 SALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       242 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      ..++|+..+++ ..|++....+++...+++++++|+.+.|++.|| +.++     .+... ..+.......  +   ...
T Consensus       229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-----~l~~~-~~l~a~~~l~--l---~~~  296 (394)
T COG2814         229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-----ALIAA-LLLLALALLA--L---TFT  296 (394)
T ss_pred             hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-----HHHHH-HHHHHHHHHH--H---HHh
Confidence            88888877776 589999999999999999999999999999999 5552     22221 1122111111  1   112


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .++.+......++.|+....... .......+.. ++.+..+.+++....++|..+|..++|.++|+ +|+
T Consensus       297 ~~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~  364 (394)
T COG2814         297 GASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGY  364 (394)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hch
Confidence            34445455566667777665555 4555555533 47899999999999999999999999999999 786

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4e-40  Score=302.92  Aligned_cols=385  Identities=38%  Similarity=0.588  Sum_probs=313.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH
Q 009914            1 MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL   80 (522)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~   80 (522)
                      ++..++.+.++++.+.++..+.+.+....+.+++.+|++++..|++.+.+.+.+.+++|+.|+++||++||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009914           81 WAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG  160 (522)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~  160 (522)
                      +.++.++.+++..+|++.++|.+.|+|.+.+.|.++++++|.+|+++|++.+++++.+..+|..+|.+.+..+....   
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---  184 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888773   


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcc-----hhHHHHHHHhh
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKI-----PSFQIIVAQGV  235 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  235 (522)
                       ..||+.|+..+++++++.++..++.+||++...++.+.+.+..++.    ...+++.+.+.++     +.+......+.
T Consensus       185 -~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~----ts~~kDl~~l~~~~v~v~~sl~~~a~~fv  259 (493)
T KOG1330|consen  185 -FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPF----TSVWKDLKVLAKIKVFVLSSLGIIAAQFV  259 (493)
T ss_pred             -cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCc----cchHHHHHHHHccCceeeehHHHHHHHHh
Confidence             3499999999999999999999999888764332221211111111    2233334444443     34444444444


Q ss_pred             hccchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009914          236 TGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL  315 (522)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (522)
                      .+...|-...+.+...+-.|++..+..++..+...++.+|.+++|.++||+.++.++..+.........++......++.
T Consensus       260 ~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~  339 (493)
T KOG1330|consen  260 IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLF  339 (493)
T ss_pred             ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHH
Confidence            44444444444444444467777778888888999999999999999999888777666777777777777666666666


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhH-HHHHHHHHhhCccc
Q 009914          316 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP-VVGILAQHVYGFKP  393 (522)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~-~~g~l~~~~~g~~~  393 (522)
                      ..+..........+.++++|....+...+...-+..+++|++.|.+++++...+..+.+..+++ +.|.+.|+..||++
T Consensus       340 ~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~  418 (493)
T KOG1330|consen  340 LFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKP  418 (493)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCc
Confidence            6665555666677788888888887777677788899999999999999999998877766555 99999999999875

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=4.6e-36  Score=293.42  Aligned_cols=351  Identities=17%  Similarity=0.201  Sum_probs=270.7

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++|..++.+.++.+..........+++|.+.+++|.|+++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34545666666666655555556677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.     .
T Consensus        86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-----~  160 (390)
T PRK03545         86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-----L  160 (390)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-----h
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhh-hccchh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV-TGSFPW  241 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  241 (522)
                      |||++|++.++++++..+..+...++++.+  ++                +..++.++.++++.++......+ .....+
T Consensus       161 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (390)
T PRK03545        161 GWRTTFLAIGGGALITLLLLIKLLPLLPSE--HS----------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHF  222 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--Cc----------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            999999999988877766655543332111  00                00123345667777655433332 222334


Q ss_pred             HHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          242 SALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       242 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      ...++.+.++++ .|++..+.+.+.....++.++++++.+++.||+++|.     . .... .....  ....+...   
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~-~~~~-~~~~~--~~~~l~~~---  290 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-----L-LIAI-ALLLV--CLLLLLPA---  290 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----H-HHHH-HHHHH--HHHHHHHH---
Confidence            455677777764 7999999999999999999999999999999998762     2 2111 11111  11111111   


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .++.+......++.|++.+...+ .....+.+..| +.+++++|+.+...++|..+||.+.|++.|. .|+
T Consensus       291 ~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~  358 (390)
T PRK03545        291 ANSEWHLSVLSIFWGIAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGL  358 (390)
T ss_pred             hchHHHHHHHHHHHHHHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh
Confidence            12334455667777887766656 56677778776 6889999999999999999999999999998 676

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.5e-36  Score=300.65  Aligned_cols=369  Identities=18%  Similarity=0.171  Sum_probs=270.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      .+..+.++++++++.++++..+++..|.+.+++|++.++.|++.+++.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            34567788888888999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHh-----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009914           84 ATFLVAF-----SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        84 ~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~  158 (522)
                      ..+++++     +++++.+++.|+++|++.+...|...+++.+|+|+++|++++++...+.++|.++++++..++.....
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            7776665     58999999999999999999999999999999999999999999999999999999998877655310


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhccC-CCCCCCCCCCCC---cc---cccchhhhhhHHHHHH-hhhhhcchhHHHH
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFAN-DPHFPDGGTANS---DQ---VSSKSFRSDVKVLIQE-AKSVIKIPSFQII  230 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  230 (522)
                        ..+||..|.+.+++.++..++.+++.+ +|+.....+.++   +.   +++....++.. ..+. .+..++++.++..
T Consensus       187 --~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  263 (467)
T PRK09556        187 --DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMT-KWQIFVEYVLKNPVIWLL  263 (467)
T ss_pred             --cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCc-HHHHHHHHHHcChHHHHH
Confidence              026999999988888777766665543 333211111000   00   00000000000 0111 2236788888877


Q ss_pred             HHHhhhccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 VAQGVTGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      .+..++... .++...|.|.|++ ++|++..+++.......++.+++.++.|+++||+++|+     .......... ..
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~-----~~~~~~~~~~-~~  337 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR-----ALVACIALAL-II  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-----hHHHHHHHHH-HH
Confidence            665554444 3456678999996 58999999999999999999999999999999999884     2222111111 11


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHH-HhchhhHHHHHHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQ  386 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~  386 (522)
                       ......  .. ..+.+...+..++.|++...... .......|.+|++.+|++.|+.+...++ +.+++|.+.|++.|
T Consensus       338 -~~~~~~--~~-~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        338 -FTLGVY--QH-ATSEYMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             -HHHHHH--Hh-cCcHHHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence             111111  11 12233344455556654322222 2235677999999999999999999997 66999999999999

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.2e-35  Score=289.57  Aligned_cols=378  Identities=16%  Similarity=0.127  Sum_probs=274.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      |.+|+.+..+++.+++++++....+...|.+.+++|++.+++|++.+++.+++.+++++.|++.||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            34688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccC
Q 009914           82 AAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-FMG  160 (522)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~~~  160 (522)
                      +++.+++++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++++++++.... ..+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886421 011


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCC-CCCCCCCCCCCcc--------------cccchhhhhhHHHHHHhhhhhcch
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQ--------------VSSKSFRSDVKVLIQEAKSVIKIP  225 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  225 (522)
                      ..|||+.|++.+++.++..++.+++.+| |+..+.-.+++++              ..+.....+.......++.++ ++
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  242 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TP  242 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-Ch
Confidence            2699999999988887776666554444 4321100000000              000000000000011233333 45


Q ss_pred             hHHHHHHHhhhccc-hhHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHH
Q 009914          226 SFQIIVAQGVTGSF-PWSALSFAAMWLELT--GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  302 (522)
Q Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  302 (522)
                      .++......++... .+...+|+|.+++++  |++..+++.+.....++.+++.++.|+++||+++|+     .......
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-----~~~~~~~  317 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-----HHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-----HHHHHHH
Confidence            55555444433333 456678999999874  678888999999999999999999999999998763     2111111


Q ss_pred             HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHH
Q 009914          303 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  382 (522)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g  382 (522)
                      ....+  . ..+... . ..... ....+.+.+++.....+ .......+.+|++.|++++|+.+...+++++++|.+.|
T Consensus       318 ~~~~~--~-~~~~~~-~-~~~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       318 LFAAA--G-WLLASA-T-DHNLI-QLLGIIMASMGSFSAMA-IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HHHHH--H-HHHHHh-c-CCHHH-HHHHHHHHHHHhhhhhh-HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            11111  1 111111 1 12111 22222223333322223 33455567789999999999999999999999999999


Q ss_pred             HHHHHhhCcc
Q 009914          383 ILAQHVYGFK  392 (522)
Q Consensus       383 ~l~~~~~g~~  392 (522)
                      .+.|...+|.
T Consensus       391 ~i~~~~g~~~  400 (412)
T TIGR02332       391 ILKDATGSFN  400 (412)
T ss_pred             cccccCCCCc
Confidence            9999844564

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.4e-35  Score=294.12  Aligned_cols=369  Identities=14%  Similarity=0.193  Sum_probs=254.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhh----hHH--HHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTG----LGS--LTLFRSIVQASCYPIAAYLAIRHNRAHVIALGA   78 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~--~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~   78 (522)
                      ++.+....++.++++++..+++...|.+.++++.+..+    ++.  +.++..+++.++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45677788999999999999999999999998644322    222  257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009914           79 FLWAAATFLVAFSSTFAQ--------VAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS  150 (522)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~  150 (522)
                      ++++++++++++++|++.        ++++|+++|++.|..++...+++.|++|+++|+++.++...+..+|.++|+.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999874        789999999999999999999999999999999999999998888988888776


Q ss_pred             Hhhhccc---ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc-ccc--cchhhhhhHHHHHHhhhhhcc
Q 009914          151 VVMAPMT---FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD-QVS--SKSFRSDVKVLIQEAKSVIKI  224 (522)
Q Consensus       151 ~~l~~~~---~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~  224 (522)
                      ..+....   ....+|||++|++.+++.++..++....+|+|++...+++.++ .++  .+....+.++.++..     .
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  249 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH-----W  249 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh-----H
Confidence            5543210   0112799999999876666544444445555543211110000 000  000000112221110     0


Q ss_pred             hhHHHHH-HHhhhccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHH
Q 009914          225 PSFQIIV-AQGVTGSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  302 (522)
Q Consensus       225 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  302 (522)
                      +.+.... ...+.....+....|+|.|++ .+|++..+.+.......++.+++.++.|+++||+|||+     .+.....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-----~~~~~~~  324 (490)
T PRK10642        250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-----FVILGSV  324 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHH
Confidence            1111111 222222334566778999996 57999888888888888889999999999999999984     2222211


Q ss_pred             HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHH
Q 009914          303 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  382 (522)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g  382 (522)
                      ......  ...+....  ..+...+....++.+++.+.... ....+..+.+|++.|+++.|+.+.+..+++.++|.+.|
T Consensus       325 ~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g  399 (490)
T PRK10642        325 ALFVLA--IPAFILIN--SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA  399 (490)
T ss_pred             HHHHHH--HHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111  11111111  12223334445555555544444 56677889999999999999877777888899999999


Q ss_pred             HHHHHh
Q 009914          383 ILAQHV  388 (522)
Q Consensus       383 ~l~~~~  388 (522)
                      ++.+..
T Consensus       400 ~l~~~~  405 (490)
T PRK10642        400 WLVEST  405 (490)
T ss_pred             HHHHHh
Confidence            998863

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=4.8e-35  Score=289.62  Aligned_cols=372  Identities=16%  Similarity=0.152  Sum_probs=271.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++..+....++++...++...++..+|.+.+++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            34566667788888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.++++++++++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+.++|.++++.+++++.+.     .|
T Consensus       101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g  175 (434)
T PRK11663        101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-----YG  175 (434)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887     89


Q ss_pred             chHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCC--C--CCcc---cccchhhhhhHHHHHHhhhhhcchhHHHHHHHhh
Q 009914          164 WRISFHIVGLISVVVGTLVRL-FANDPHFPDGGT--A--NSDQ---VSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV  235 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~--~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (522)
                      ||+.|++.+++.++..++..+ ++++|+......  +  .+..   ++.+....+.++..+  +..++++.++.+....+
T Consensus       176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  253 (434)
T PRK11663        176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILT--KYVLLNPYIWLLSFSYV  253 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHH--HHHhcChHHHHHHHHHH
Confidence            999999988877666554444 444433211000  0  0000   000000001111111  12566777776655444


Q ss_pred             hccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          236 TGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      .... .....+|+|.|++ ++|++..+++...+...+++++++++.|++.||+.++++   +............  ....
T Consensus       254 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r---~~~~~~~~~~~~~--~~~~  328 (434)
T PRK11663        254 LVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNR---GPMNLIFAAGILL--SVGS  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCc---cHHHHHHHHHHHH--HHHH
Confidence            4333 3455678999995 589999999999999999999999999999999843321   1111111111111  1111


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +...+. .+ ........+.+|++...... .......|..|++.++++.|+.++..++|++++|.+.|++.|. .||
T Consensus       329 ~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~  402 (434)
T PRK11663        329 LWLMPF-AS-YVMQAACFFTIGFFVFGPQM-LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHW  402 (434)
T ss_pred             HHHccc-cc-HHHHHHHHHHHHHHHhhHHH-HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-ccc
Confidence            112222 12 22222333444443322222 2345668889999999999999999999999999999999998 666

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.7e-35  Score=287.79  Aligned_cols=358  Identities=18%  Similarity=0.193  Sum_probs=273.4

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++|..+...++..+.++++....+...|.+.+++|.|+.+.|++.+.+.++..++.++.|+++||+|||+++..+.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            45677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.     .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~  166 (406)
T PRK11551         92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-----A  166 (406)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888776     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHH-HHHhhhccch
Q 009914          163 GWRISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGVTGSFP  240 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  240 (522)
                      +||+.|++.+++.++..++... +++.|+...++.+   .+.++...   +...+.    .+.+..+.+ ....+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~  236 (406)
T PRK11551        167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---GKQRAPVL---RALFGE----GRATATLLLWISYFFTLIVL  236 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc---chhhhhhH---HHHhhh----hhhhHHHHHHHHHHHHHHHH
Confidence            9999999988776666555544 3443332211110   00000000   111111    011111122 1111222223


Q ss_pred             hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      +....|.|.++++.|++..+.+.+.+...++.++++++.|++.||+++|+     .+.... .....  ....+. .  .
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~-~~~~~--~~~~~~-~--~  305 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----VVLLIY-AGILA--SLAALA-A--A  305 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHH-HHHHH--HHHHHH-h--c
Confidence            45567889999889999999999999999999999999999999999873     322211 11111  111111 1  1


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      + ..+...+..++.|++.+...+ ...++..|.+|+++|+++.|+.+....++..++|.+.|.+.+..
T Consensus       306 ~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        306 P-SFAGMLLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             C-cHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence            2 223344555667776665566 67889999999999999999999999999999999999999873

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=3.7e-34  Score=287.55  Aligned_cols=373  Identities=19%  Similarity=0.165  Sum_probs=287.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH
Q 009914            1 MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL   80 (522)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~   80 (522)
                      |.++|..+..++++.++..++..+.+..+|.+.+++|.+.++.+|+.+.+.++..++.+++|+++||+|||++++.+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009914           81 WAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADST-DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM  159 (522)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~  159 (522)
                      .+++.+++++++|++.++++|+++|++.+...+.....+.+++ |+++|++++++......+|..+||.+++++.+.   
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---  157 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---  157 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence            9999999999999999999999999999999998888887776 678999999999999999999999999999988   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcc----------------cccchhhhhh------------
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQ----------------VSSKSFRSDV------------  211 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~------------  211 (522)
                        .+||+.|++...+.++..++..+..++++..+.++.+...                ......+...            
T Consensus       158 --~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (495)
T PRK14995        158 --FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL  235 (495)
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence              8999999998887777766665544332211111100000                0000000000            


Q ss_pred             --HHHHHHh--------hhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhh
Q 009914          212 --KVLIQEA--------KSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFG  279 (522)
Q Consensus       212 --~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  279 (522)
                        .....+.        .+++++|.+.......+.... .++...+.|.|++. +|+++.++|.......++..++.++.
T Consensus       236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000111        245677777665554444443 34555678999874 89999999999999999999999999


Q ss_pred             hhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchh
Q 009914          280 GRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR  359 (522)
Q Consensus       280 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  359 (522)
                      |++.||+++|+     .+... ..+..+.  ...+.......+ .+......++.|++.+...+ .....+.+.+|++++
T Consensus       316 g~l~~r~g~~~-----~~~~g-~~~~~~~--~~~l~~~~~~~~-~~~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~  385 (495)
T PRK14995        316 GILVSRLGLRL-----VATGG-MALSALS--FYGLAMTDFSTQ-QWQAWGLMALLGFSAASALL-ASTSAIMAAAPPEKA  385 (495)
T ss_pred             HHHHHHcCchH-----HHHHH-HHHHHHH--HHHHHHhcCCCc-hHHHHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHhc
Confidence            99999999873     22221 1111111  111111122222 23345567788888888777 677888889999999


Q ss_pred             HHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          360 TSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       360 ~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      +.+.++.++..++|+.+|+.+.|.+.+..
T Consensus       386 g~~~~~~~~~~~lG~~~G~ai~g~i~~~~  414 (495)
T PRK14995        386 AAAGAIETMAYELGAGLGIAIFGLLLSRS  414 (495)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998863

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.7e-34  Score=286.30  Aligned_cols=367  Identities=16%  Similarity=0.142  Sum_probs=267.1

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      .+++.+..+.++++..+++.....+..|.+.+++|+|+.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.     .
T Consensus        95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-----~  169 (426)
T PRK12307         95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-----Y  169 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-----C
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888877     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc---
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF---  239 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  239 (522)
                      +||+.|++..+..++...+....+++++..+++.+ ++.++....+   +......+..++++.++...........   
T Consensus       170 ~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (426)
T PRK12307        170 GWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS-GKGKHSQSAW---SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG  245 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-ccccccccch---hhhhHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            99999998654433322222122222211111100 0000011111   1111234556666665543322221111   


Q ss_pred             -hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          240 -PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       240 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                       .+....++|.|+++.|+++.+.+.+.+...++.++++++.+++.||+++|+     ....... ....  ....+....
T Consensus       246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~~~~~~~-~~~~--~~~~~~~~~  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-----TFSIGLL-MSFL--FIFPLFRIP  317 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHH-HHHH--HHHHHHHHc
Confidence             223456789999888999999999999999999999999999999999873     3222211 1111  111111111


Q ss_pred             CCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          319 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                        ...........+..+++.....+ ....++.|.+|++.|++++|+.+.+..+++.++|.+.|++.+. .|
T Consensus       318 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-~g  385 (426)
T PRK12307        318 --QDNYLLLGACLFGLMATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-MG  385 (426)
T ss_pred             --cccHHHHHHHHHHHHHhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-cc
Confidence              11112121222222222222223 4567789999999999999999999999999999999999988 45

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.4e-34  Score=279.78  Aligned_cols=358  Identities=14%  Similarity=0.119  Sum_probs=268.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|+.+....+..+..+ ....+++..|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         2 WWYVLVGTVIMCFTSG-YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             eEEEeHHHHHHHHHhh-HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            3444444444444444 356788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.++++++++++.+++.|++.|++.+...+.....+.+++| ++|++++++...+.++|.++++++.+.+.+.     .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~  154 (377)
T TIGR00890        81 GFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-----EG  154 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-----cc
Confidence            99999999999999999999999999988888889999986 5799999999999999998877777776665     79


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccch-hH
Q 009914          164 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP-WS  242 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  242 (522)
                      ||+.|++.+++.++..+..+++.++|+.++.+++ ++.+          +..+..++.++++.++......+..... ..
T Consensus       155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (377)
T TIGR00890       155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN-IEVS----------VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL  223 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheecCchhccccC-cccc----------hhhhhHHHHHcCccHHHHHHHHHHHhHHHHH
Confidence            9999999999888887777666555433221111 0000          0011234456777766655444433332 23


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 009914          243 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  322 (522)
Q Consensus       243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (522)
                      ...+.+.|.+++|.+..+.+.+.+...++.++++++.|++.||+++|+     .+.... .....  ........ .. .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~-~~~~~--~~~~~~~~-~~-~  293 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----TMSIVF-GISAV--GMAAMLFI-PM-L  293 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhHHH-HHHHH--HHHHHHHc-cc-c
Confidence            345567777888999988999999999999999999999999999884     222211 11111  11111111 11 1


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .........++.+++.+...+ ....++.|.+|+++|+++.|+.+....++..++|.+.|.+.+. .||
T Consensus       294 ~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~  360 (377)
T TIGR00890       294 NDVLFLATVALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGF  360 (377)
T ss_pred             hhHHHHHHHHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hch
Confidence            222233445566777776666 6778899999999999999999999999999999999999988 565

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.1e-33  Score=271.47  Aligned_cols=336  Identities=13%  Similarity=0.018  Sum_probs=244.5

Q ss_pred             HHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009914           18 ERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQV   97 (522)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l   97 (522)
                      +......+++.+|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....++++.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44556778999999999999999999999999999999999999999999999988766655554544333334799999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHH
Q 009914           98 AISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVV  177 (522)
Q Consensus        98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i  177 (522)
                      ++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.+.     .|||+.|++.++++++
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~gWr~~f~~~~~l~~~  156 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----GGLQLLIIPIAAVAAA  156 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHH
Confidence            9999999999986 456666779999999999999999999999999999999999887     8999999998888877


Q ss_pred             HHHhhhhc-cCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHHhC
Q 009914          178 VGTLVRLF-ANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLELTG  255 (522)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g  255 (522)
                      ..++.++. |++|++..+ .  .   +.       ++..+++++++++|.++.+....++... .++..+|+|.|+++.|
T Consensus       157 ~~~~~~~~lp~~p~~~~~-~--~---~~-------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g  223 (368)
T TIGR00903       157 GIILVLAALPALPFQAAE-G--F---GF-------KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAG  223 (368)
T ss_pred             HHHHHHHHcCCCCCCCCC-C--c---ch-------HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77666654 443432211 0  0   00       1112345678888888877665555544 5677889999998888


Q ss_pred             CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 009914          256 FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTG  335 (522)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  335 (522)
                      ++.. .+....+..+.+.++   .++++||..|++..  +............  ... .....  .+ ......+..+.+
T Consensus       224 ~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r--~~~~~~~~~~~a~--~~~-~~~~~--~~-~~~~~~~~~l~~  291 (368)
T TIGR00903       224 LEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLR--SIYIRAAALLIAA--FFL-ALAFE--LN-RLALFAFIGIAG  291 (368)
T ss_pred             CChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH--HHHHHHHHHHHHH--HHH-HHHHc--cc-cHHHHHHHHHHH
Confidence            8865 566666666655554   47788887654211  1111111111111  111 11111  11 222334445556


Q ss_pred             HHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          336 LFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      ++.....+ ..+++.+|.+|++.|+++.|+.+..+++++.++|++.+.+.
T Consensus       292 ~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       292 LLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            65555555 57789999999999999999999999999999999988877

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.5e-33  Score=273.33  Aligned_cols=351  Identities=14%  Similarity=0.131  Sum_probs=267.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +.|+.+..+.++.+............+|.+.+++|.++++.|+..+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~   96 (394)
T PRK10213         17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT   96 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence            34555556666655555555566677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.++||++++.+.+.     .
T Consensus        97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-----~  171 (394)
T PRK10213         97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-----I  171 (394)
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PW  241 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (522)
                      |||+.|++.+++.++..+......++++.  +++     + .       .   +..++.+++|.++......+.... .+
T Consensus       172 gw~~~f~~~~~l~~~~~l~~~~~~p~~~~--~~~-----~-~-------~---~~~~~~l~~~~~~~~~~~~~~~~~~~~  233 (394)
T PRK10213        172 GWRNVFNAAAVMGVLCIFWIIKSLPSLPG--EPS-----H-Q-------K---QNTFRLLQRPGVMAGMIAIFMSFAGQF  233 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCc--ccc-----c-c-------h---hHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999887776655544432222111  000     0 0       0   112345677777665443333222 33


Q ss_pred             HHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          242 SALSFA-AMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       242 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      ...++. |.|.+++|+++.+.+......+++.+++.++.+++.||.+++      ............  . ..+...   
T Consensus       234 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~------~l~~~~~~~~~~--~-~~l~~~---  301 (394)
T PRK10213        234 AFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL------ALAGAPLVLAVS--A-LVLTLW---  301 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHH--H-HHHHHH---
Confidence            444564 677778899999999999999999999999999999985433      222211111111  1 111111   


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .+..+......++.|++.+...+ ...+.+++..| +++++..+......+++..+||.++|++.|. .|+
T Consensus       302 ~~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-~g~  369 (394)
T PRK10213        302 GSDKIVATGVAIIWGLTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-IGL  369 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh
Confidence            12233455667778888887777 77778888887 5577888888888899999999999999997 564

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=4.2e-34  Score=281.94  Aligned_cols=371  Identities=17%  Similarity=0.186  Sum_probs=272.4

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++|+.+..++++++...++....++..|.+.+++|.|+.+.|++.+++.++..+++++.|.++||+|||+++..+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+.     .
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~-----~  163 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV-----W  163 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998775     4


Q ss_pred             C--chHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc--------chhhhhhHHHHHHhhhhh-cch-hHHHH
Q 009914          163 G--WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSS--------KSFRSDVKVLIQEAKSVI-KIP-SFQII  230 (522)
Q Consensus       163 g--w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~-~~~~~  230 (522)
                      +  ||+.|++.++..++..+.....+++++..+.+++.+...+.        ...+...++.....+... +++ .+...
T Consensus       164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (405)
T TIGR00891       164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYL  243 (405)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHH
Confidence            4  99999987766555544444454433222111110000000        000000000001111111 111 11111


Q ss_pred             H-HHhhhccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 V-AQGVTGSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      . ...+..........+.|.|++ ++|++..+.+.+.+...++.++++++.+++.||+++|+     .+..... .... 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-----~~~~~~~-~~~~-  316 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-----AYVCSLL-AGQL-  316 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-----hhHHHHH-HHHH-
Confidence            1 111122222344567888885 58999999999999999999999999999999999884     2222211 1111 


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                       ........   ....+...+..++.++......+ ....++.|.+|++.|++++|+.+.+.++++.++|++.|.+.|. 
T Consensus       317 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-  390 (405)
T TIGR00891       317 -LIIPVFAI---GANVAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-  390 (405)
T ss_pred             -HHHHHHHh---CCchHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence             11111111   12223334444555665555555 6778899999999999999999999999999999999999998 


Q ss_pred             hC-c
Q 009914          389 YG-F  391 (522)
Q Consensus       389 ~g-~  391 (522)
                      .| |
T Consensus       391 ~g~~  394 (405)
T TIGR00891       391 LDEY  394 (405)
T ss_pred             cccc
Confidence            45 5

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=6e-34  Score=282.68  Aligned_cols=373  Identities=16%  Similarity=0.120  Sum_probs=271.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|.++..+.+...........++...|.+.+++|.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            46666666666665555556678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHH-HHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           84 ATFLVAFSSTFAQVAI-SRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      +.++++++++++.+++ .|++.|++.+...+...+++.++++ ++|++++++.+.+..+|..++|++++.+.+.     .
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-----~  170 (455)
T TIGR00892        97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-----F  170 (455)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----h
Confidence            9999999999988865 5799999998877777888899995 7899999999999999999999999999887     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCC---CCCCCCC-cccccc-h--hhhhhHHHHHH-hhhhhcchhHHHHHHHh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFP---DGGTANS-DQVSSK-S--FRSDVKVLIQE-AKSVIKIPSFQIIVAQG  234 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  234 (522)
                      |||++|++.+++.++..+..++..+.++..   +.+.++. +..... +  .....++..+. ..+.+++|.++..+...
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGN  250 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHH
Confidence            999999999988776665544443322111   0000000 000000 0  00000111110 01356778777665544


Q ss_pred             hhccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          235 VTGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       235 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      +.... .+....++|.|+++.|++..+++.+.++.+++.++++++.+++.||...++.   +.........+.. +..+ 
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~~~-l~~l-  325 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH---VQYLFSFALLFNG-LTHL-  325 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH---HHHHHHHHHHHHH-HHHH-
Confidence            43333 3455578899998899999999999999999999999999999997422110   1111111111111 1111 


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +..  . .++.+.+.+..++.|++.+...+ ...+++.|.+|++++++.+|+.+...+++.+++|.++|.+.+...+|
T Consensus       326 l~~--~-~~~~~~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  399 (455)
T TIGR00892       326 LCA--L-AGDYTGLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY  399 (455)
T ss_pred             HHH--H-hchHHHHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence            111  1 12334455677788888877777 77889999999999999999999999999999999999999984455

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.4e-33  Score=275.48  Aligned_cols=332  Identities=14%  Similarity=0.124  Sum_probs=249.0

Q ss_pred             hhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009914           23 SLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRA  102 (522)
Q Consensus        23 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  102 (522)
                      ...++.+|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+..+++++.++++++++++.+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhh
Q 009914          103 LNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~  182 (522)
                      ++|++.+...+...+++.+++| ++|++++++...+..+|..+|+.+++++.++.    .+||..+.+.++..++..+..
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----~~w~~~~~~~~~~~~~~~~~~  180 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----ETWYQTLAWWALPAVVALFAW  180 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997 77999999999999999999999999888751    389999887766655443333


Q ss_pred             hhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc-chhHHHHHHHHHHHHhCCChhHH
Q 009914          183 RLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS-FPWSALSFAAMWLELTGFSHEKT  261 (522)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~  261 (522)
                      +...++.+..++ +    ++ .            ..++.++++..+.......... ..+...+|.|.|++++|.+..++
T Consensus       181 ~~~~~~~~~~~~-~----~~-~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~a  242 (393)
T PRK09705        181 WWQSAREVASSH-K----TT-T------------TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYS  242 (393)
T ss_pred             HHHhcCCCcccc-C----CC-c------------CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Confidence            322222111000 0    00 0            0112234454444433333233 34466678999998899999999


Q ss_pred             HHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhcc
Q 009914          262 AFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWN  341 (522)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  341 (522)
                      +...++..++.++++++.+++.||+++|+     ...... .+...  ....+...+.  .... .  ..++.|++.+..
T Consensus       243 g~~~~~~~i~~i~g~~~~g~l~~r~~~~~-----~~~~~~-~l~~~--~~~~~~~~~~--~~~~-~--~~~l~g~g~g~~  309 (393)
T PRK09705        243 GSLLALMTLGQAAGALLMPAMARHQDRRK-----LLMLAL-VLQLV--GFCGFIWLPL--QLPV-L--WAMVCGLGLGGA  309 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccchH-----HHHHHH-HHHHH--HHHHHHHccc--hHHH-H--HHHHHHHhccch
Confidence            99999999999999999999999998873     322221 11111  1111111121  1111 1  233456666666


Q ss_pred             CCCcchhhhhhhcC-cchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          342 APATNNPIFAEIVP-EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       342 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .+ .......+..+ ++.+++..|+.+.+.++++.++|.+.|++.|...+|
T Consensus       310 ~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~  359 (393)
T PRK09705        310 FP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY  359 (393)
T ss_pred             HH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            66 45555566664 678999999999999999999999999999994334

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=3.2e-34  Score=282.05  Aligned_cols=364  Identities=18%  Similarity=0.190  Sum_probs=271.9

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhH
Q 009914           15 GIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTF   94 (522)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~   94 (522)
                      +++..++...++...|.+.+++|.|+.+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            45667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHH
Q 009914           95 AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLI  174 (522)
Q Consensus        95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~  174 (522)
                      +.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|.++++.+++.+.+.     .+||+.|++.+++
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~  157 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSWQWAFIIEGVL  157 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998877     8999999999888


Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCccc-ccch------hhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHH
Q 009914          175 SVVVGTLVRLFANDPHFPDGGTANSDQV-SSKS------FRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSF  246 (522)
Q Consensus       175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  246 (522)
                      .++..++.++..++++..+...++++++ ..+.      ..++.+......++.+++|.++......+.... ......+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
T TIGR00893       158 GIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW  237 (399)
T ss_pred             HHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            8777776665544432221111000000 0000      000001111234456677777766555554444 3455678


Q ss_pred             HHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          247 AAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       247 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      .|.|++ .+|.+..+.+.+.+...++.+++.++.+++.||+++|+..   ........................ ....+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  313 (399)
T TIGR00893       238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS---LVFARKTAIIAGLVLSLLMFATNY-VNIPY  313 (399)
T ss_pred             HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHhcc-chhHH
Confidence            898886 5899999999999999999999999999999999998521   111111111111111111111111 12222


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      .......+.+++.+ ..+ ...++..|..|++.|+++.|+.+.+.+++..++|.+.|.+.|. .|
T Consensus       314 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g  375 (399)
T TIGR00893       314 AALALVALGFFGLG-AGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TG  375 (399)
T ss_pred             HHHHHHHHHHhchh-hhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CC
Confidence            22222333333333 455 7889999999999999999999999999999999999999998 44

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7.2e-34  Score=289.89  Aligned_cols=371  Identities=14%  Similarity=0.126  Sum_probs=270.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|..+++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++.++
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i  244 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF  244 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            46677778888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF-----  158 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~-----  158 (522)
                      +.++++++++++.++++|++.|++.+...+...+++.|++|+++|++.+++..++..+|.++++.++..+.....     
T Consensus       245 ~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~  324 (742)
T TIGR01299       245 FAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM  324 (742)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999988877654210     


Q ss_pred             ---cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc--------------cc--ccch-------------
Q 009914          159 ---MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD--------------QV--SSKS-------------  206 (522)
Q Consensus       159 ---~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~-------------  206 (522)
                         ....+||+.+++.++..++..++.+++|++|++...+.+.++              ..  +...             
T Consensus       325 g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~  404 (742)
T TIGR01299       325 GSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQED  404 (742)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhh
Confidence               112479999999888877777777778888876432211000              00  0000             


Q ss_pred             -------hhh------------hhHHHHHHhhhhhcch----hHHHHHHHhhhccchhHHHHHHHHHHHHh---------
Q 009914          207 -------FRS------------DVKVLIQEAKSVIKIP----SFQIIVAQGVTGSFPWSALSFAAMWLELT---------  254 (522)
Q Consensus       207 -------~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  254 (522)
                             ...            .....+...+.+++.+    .+.+.++.++.....|+...|+|.++++.         
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~  484 (742)
T TIGR01299       405 ELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALT  484 (742)
T ss_pred             hhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                   000            0000111233333332    23344444444555678888999876431         


Q ss_pred             ---------------------------------CC-----C---------------------------------------
Q 009914          255 ---------------------------------GF-----S---------------------------------------  257 (522)
Q Consensus       255 ---------------------------------g~-----~---------------------------------------  257 (522)
                                                       |+     +                                       
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~  564 (742)
T TIGR01299       485 KNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEY  564 (742)
T ss_pred             ccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhh
Confidence                                             00     0                                       


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          258 -----------------------------HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       258 -----------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                                                   .........+..++.+++.++.++++||+|||+     .+... ..+.++.
T Consensus       565 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-----~l~~~-~~lsai~  638 (742)
T TIGR01299       565 KFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR-----MLAGS-MVLSCIS  638 (742)
T ss_pred             hhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHH-HHHHHHH
Confidence                                         001233355667889999999999999999984     32221 1111111


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ...+.   .  .++... +++..++.+++.+...+ ....+++|.+|++.|++++|+.+....+|.+++|+++|.+.+.
T Consensus       639 ~ll~~---~--~~s~~~-ll~~~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       639 CFFLS---F--GNSESA-MIALLCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHH---H--HccHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111   1  122222 33444566666665566 6889999999999999999999999999999999999988875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.9e-33  Score=278.42  Aligned_cols=371  Identities=16%  Similarity=0.134  Sum_probs=257.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|..+..+++.......++..+++..|.+.++ |.|+.+.|++.+.+.+++.+++++.|+++||+|||++++++.++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence            34445555566666666666678888999888 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q 009914           84 ATFLVAFSS----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSL-VGGLFSVVMAPMTF  158 (522)
Q Consensus        84 ~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~-~g~~l~~~l~~~~~  158 (522)
                      +.+++++.+    +++.+++.|++.|++.+...+.....+.+++|+++|++++++.+.+.++|.. .+++++..+...  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--  183 (452)
T PRK11273        106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF--  183 (452)
T ss_pred             HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence            998888763    6888899999999999999888888999999999999999999999999874 555554444333  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhc-cCCCCCCCCCCCCC--c--cc---ccchhhhhhHHHHHHhhhhhcchhHHHH
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLF-ANDPHFPDGGTANS--D--QV---SSKSFRSDVKVLIQEAKSVIKIPSFQII  230 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (522)
                         .+||+.|++.+++.++..++..++ +++|+....+++.+  .  .+   .++....+.++..  .+.+++++.++..
T Consensus       184 ---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  258 (452)
T PRK11273        184 ---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIF--MQYVLPNKLLWYI  258 (452)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHH--HHHHHcChHHHHH
Confidence               599999999988877766655554 44333211100000  0  00   0000000111111  1246678888776


Q ss_pred             HHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 VAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      .+..++... .+....++|.|+++ .|++..+++.......++.+++.++.|+++||+++++.   +........+..+ 
T Consensus       259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~---~~~~~~~~~l~~~-  334 (452)
T PRK11273        259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---GATGVFFMTLVTI-  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---chHHHHHHHHHHH-
Confidence            555444433 45667899999975 79999999999888899999999999999999954321   1111111111111 


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhch-hhHHHHHHHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF-APPVVGILAQH  387 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i-~~~~~g~l~~~  387 (522)
                       ....+.. ... ...+...+..+..|.+...... ....+..|.+|++.+|+++|+.+...++++.+ +|.+.|.+.|+
T Consensus       335 -~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~  410 (452)
T PRK11273        335 -ATIVYWL-NPA-GNPTVDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  410 (452)
T ss_pred             -HHHHHHH-hcc-cChHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence             1111111 111 1222233344445544332222 23456779999999999999999999988765 79999999999


Q ss_pred             hhCc
Q 009914          388 VYGF  391 (522)
Q Consensus       388 ~~g~  391 (522)
                       .||
T Consensus       411 -~g~  413 (452)
T PRK11273        411 -FGW  413 (452)
T ss_pred             -hcc
Confidence             566

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.3e-33  Score=281.69  Aligned_cols=363  Identities=15%  Similarity=0.092  Sum_probs=250.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +++.+...+...+...+......+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44566666677777777777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccc
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM----TFM  159 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~----~~~  159 (522)
                      +.++++++++++.+++.|++.|++.+... ....++.+++|+++|++++++.....++|..+++.+.+.+...    ...
T Consensus       114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999987654 4567899999999999999999888888887777666544321    001


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF  239 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (522)
                      +..|||+.|++.+++.++..++.++++++++....++..++.+.++      ....+..++.++++.+|.+.+..+....
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPK------DSFSKVLRYGVTNYRTWILALTYGYSFG  266 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCcccc------ccHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            1258999999999998888777777665433211000000000000      0111234455677776655444333322


Q ss_pred             -hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 009914          240 -PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  317 (522)
Q Consensus       240 -~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (522)
                       .+...++.|.|+. ++|++..+++.+.++..++.++++++.|+++||+++|+..+.|.........+...  ....  .
T Consensus       267 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i--~~~~--~  342 (476)
T PLN00028        267 VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGV--FCIW--L  342 (476)
T ss_pred             HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHH--HHHH--h
Confidence             3445667888885 57999999999999999999999999999999999875433333332222221111  1111  1


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHH
Q 009914          318 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  380 (522)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~  380 (522)
                      ....+ .......+++.+++.+.... ..+++..+..| +.+|+..|+.+..+.+++.++|.+
T Consensus       343 ~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        343 GRANS-LGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             cccch-HHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHH
Confidence            21222 22233444555555544444 45555666554 688999998866554554444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=7.7e-33  Score=273.86  Aligned_cols=358  Identities=15%  Similarity=0.138  Sum_probs=244.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC---CChhhhHH---HHHHHHHHHHhhhhhHHHHHHHhchhHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALH---TDPTGLGS---LTLFRSIVQASCYPIAAYLAIRHNRAHVIALG   77 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~---~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~   77 (522)
                      +++.+...+++.++++++...++...|.+.++++   .+..+.+.   +.+...++..++++++|+++||+|||+++..+
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3445666778899999999999999999999985   55554444   44555555669999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009914           78 AFLWAAATFLVAFSSTFA--------QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLF  149 (522)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l  149 (522)
                      .++++++++++++++++.        .++++|+++|++.|..++...+++.|++|+++|+++.++...+...|.++++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988764        588999999999999999999999999999999999999998888888888877


Q ss_pred             HHhhhccc---ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh
Q 009914          150 SVVMAPMT---FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS  226 (522)
Q Consensus       150 ~~~l~~~~---~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (522)
                      ...+....   ....+|||++|++.+++.++...+....+|+++.+.++      .++          ....+++++++.
T Consensus       180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------~~~----------~~~~~~l~~~~~  243 (432)
T PRK10406        180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------LKE----------AGSLKGLWRNRR  243 (432)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------hcc----------cccHHHHHhhHH
Confidence            65543210   00127999999998887766544333333332211100      000          012233455555


Q ss_pred             HHHHHHHhh-h-ccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHH
Q 009914          227 FQIIVAQGV-T-GSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  303 (522)
Q Consensus       227 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  303 (522)
                      .+....... . ....+...+|+|.|++ ++|++..+.+....+..+..+++..+.|+++||++||+     ....... 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-----~~~~~~~-  317 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-----SMLCFGS-  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHHHHHH-
Confidence            554433322 2 2334567789999986 58999988888888888888888999999999999884     3222211 


Q ss_pred             HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHH-HhchhhHHHH
Q 009914          304 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVG  382 (522)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~~g  382 (522)
                      +..+......... ..... .........+..+..+...+ ....+..|.+|++.|+++.|+.+.+.++ .+...|.+.+
T Consensus       318 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~  394 (432)
T PRK10406        318 LAALFTVPILSAL-QNVSS-PYAAFGLVMCALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL  394 (432)
T ss_pred             HHHHHHHHHHHHH-HcCCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence            1111111111111 11112 22122222222222222233 4577889999999999999999988775 3555777777


Q ss_pred             HHHHH
Q 009914          383 ILAQH  387 (522)
Q Consensus       383 ~l~~~  387 (522)
                      .+ +.
T Consensus       395 ~l-~~  398 (432)
T PRK10406        395 SL-KS  398 (432)
T ss_pred             HH-HH
Confidence            54 54

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.2e-33  Score=283.95  Aligned_cols=372  Identities=16%  Similarity=0.193  Sum_probs=263.5

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++|+.+..++++.+++.++.....+.+|.+.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++++.++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.     .
T Consensus        97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~  171 (496)
T PRK03893         97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-----W  171 (496)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchh-hhhhHHHHH-------------Hhhhh-------
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSF-RSDVKVLIQ-------------EAKSV-------  221 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~-------  221 (522)
                      +||+.|++.++..++..+.....++.++...++++..+.++..+. ....++...             .....       
T Consensus       172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
T PRK03893        172 GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV  251 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence            999999875554433332222334332211111110000000000 000000000             00000       


Q ss_pred             --------------------hcchhHHHHHHHhhhcc-chhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhh
Q 009914          222 --------------------IKIPSFQIIVAQGVTGS-FPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFG  279 (522)
Q Consensus       222 --------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  279 (522)
                                          .+.+....+....+... ..+....++|.|++ ++|++..+.+.+.+...++.+++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~  331 (496)
T PRK03893        252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG  331 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00000000111111111 11234567899996 799999999999999999999999999


Q ss_pred             hhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchh
Q 009914          280 GRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR  359 (522)
Q Consensus       280 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  359 (522)
                      |++.||+++|+     .+.... .+...  ..+.... . .....+......++.++......+ ....++.+.+|++.|
T Consensus       332 g~l~dr~g~~~-----~~~~~~-~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  400 (496)
T PRK03893        332 GFLGDWLGTRK-----AYVCSL-LISQL--LIIPVFA-I-GGANVWVLGLLLFFQQMLGQGISG-LLPKLIGGYFDTEQR  400 (496)
T ss_pred             HHHHHHhcchH-----HHHHHH-HHHHH--HHHHHhh-c-cccHHHHHHHHHHHHHHHhcccch-hhHHHHHhhCCHHHh
Confidence            99999999883     322221 11111  1111111 1 122222232333333333323334 567788999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          360 TSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       360 ~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ++++|+.+....+++.++|.+.|.+.|. .|+
T Consensus       401 g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~  431 (496)
T PRK03893        401 AAGLGFTYNVGALGGALAPILGALIAQR-LDL  431 (496)
T ss_pred             hcccchhhhhhhHHHHHHHHHHHHHhcc-CCh
Confidence            9999999999999999999999999998 565

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=7.2e-33  Score=270.96  Aligned_cols=354  Identities=13%  Similarity=0.104  Sum_probs=268.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      .+|++..+..+++.++.+.....+++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            46777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           82 AAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      +++.++++++++++.+++.|+++|++.+...+...+++.+++|+++|++.++..+....+|..++|.+.+.+....    
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----  158 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS----  158 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988776421    


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-h
Q 009914          162 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-P  240 (522)
Q Consensus       162 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (522)
                      .+||++|.+.+++.++..++.++ .+.|+.++++.  ++.+ +     .       .+..+ ++.++.+....+.... .
T Consensus       159 ~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~--~~~~-~-----~-------~~~~~-~~~~~~~~~~~~~~~~~~  221 (394)
T PRK03699        159 IEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAP--KADK-P-----V-------AKEKW-GIGVLFLAIAALLYILAQ  221 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCc--cccC-c-----c-------ccccC-ChHHHHHHHHHHHHHHHH
Confidence            69999999988877766554433 22232111111  0000 0     0       01111 2333333333333322 3


Q ss_pred             hHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 009914          241 WSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       241 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (522)
                      +....|.|.|++ ++|+++.+.+.+.+...++.++++++.++++||+++|+     ....... .. .. . ...+... 
T Consensus       222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~l~~~~~-~~-~~-~-~~~~~~~-  291 (394)
T PRK03699        222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-----ILTVLAG-LA-LV-L-MYLFVNT-  291 (394)
T ss_pred             HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-----HHHHHHH-HH-HH-H-HHHHHHc-
Confidence            466689999996 58999999999999999999999999999999999884     3222211 11 11 1 1111111 


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          320 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                       ++ ........+..|++.+...+ ...+...+..| +.+++..|.......+|..++|.+.|++.+. .|+
T Consensus       292 -~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~  358 (394)
T PRK03699        292 -DD-PSHLLYAILGLGFFSSAIYT-TIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGL  358 (394)
T ss_pred             -CC-chHHHHHHHHHHHHHHHHHH-HHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCc
Confidence             12 22244456677777766666 56667777766 4467788899999999999999999999998 565

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=2.8e-33  Score=272.09  Aligned_cols=353  Identities=16%  Similarity=0.152  Sum_probs=277.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   89 (522)
                      .+..+.++..+......+.+|.+..+++.++.++|++.+++.++..++++++|+++||+|||+++..+.++.+++.++..
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            35677788888888889999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             hhh-----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           90 FSS-----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        90 ~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      +.+     +++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|.++||.+++.+.+.     .+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~  157 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----LGI  157 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhH
Confidence            887     9999999999999999999999999999999999999999999999999999999999999887     899


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccch-hHH
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP-WSA  243 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  243 (522)
                      |+.|++.++..++..+..+....+ +..+.+++ +   .++   +..++..+..+..+++|.++......+..... ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (365)
T TIGR00900       158 KWAIWVDAVGFAISALLIVSVRIP-ELAASEIQ-A---LSN---AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPA  229 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-cCCCcccc-c---cch---hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            999999887766665554443221 11111110 0   000   11123334556677888877666555444443 334


Q ss_pred             H-HHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009914          244 L-SFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  321 (522)
Q Consensus       244 ~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (522)
                      . .+.|.|.++ +|.+..+.+.+.....++.+++.++.+++.||+++++     ..... ....++..  .. ....  +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~~--~~-~~~~--~  298 (365)
T TIGR00900       230 IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-----LMTGA-IFVIGLAI--LV-VGLT--P  298 (365)
T ss_pred             HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-----HHHHH-HHHHHHHH--HH-HHhh--c
Confidence            4 678888875 8999999999999999999999999999999998873     22221 11111111  11 1111  1


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          322 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ++.+...+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+...+++..++|.+.|.+.|.
T Consensus       299 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       299 PNFPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1244466677888888888877 7889999999999999999999999999999999999999987

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=3.9e-32  Score=266.41  Aligned_cols=362  Identities=16%  Similarity=0.175  Sum_probs=261.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      ++.+....++.++...........++.+.+++|.|+++.|++.+.+.++..+++++.|++.||+|||+++..+..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~   91 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG   91 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            56677778888887777776666777778899999999999999999999999999999999999999999999998888


Q ss_pred             HHHHH---h-hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhhccccc
Q 009914           85 TFLVA---F-SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGS-LVGGLFSVVMAPMTFM  159 (522)
Q Consensus        85 ~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~-~~g~~l~~~l~~~~~~  159 (522)
                      .+++.   . .++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+...++|. ++++++++.+.+.   
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---  168 (402)
T TIGR00897        92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---  168 (402)
T ss_pred             HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---
Confidence            76553   3 25788889999999999988888888899999999999999999999999997 6899999988876   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF  239 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (522)
                        .||+..++......++..++..++.++++.++.++  +  +.   ..   ++..+..+.++++|.++......++...
T Consensus       169 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (402)
T TIGR00897       169 --FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ--T--RE---KF---SELGKAATILFTNPNVLLGGMVRIINTI  236 (402)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc--C--Cc---ch---hhHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence              78666655544433333333344333322111110  0  00   01   2223345567788888766554444333


Q ss_pred             -hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          240 -PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       240 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                       .+...++.|.|++++|++..+.+.+.....++.+++.++.|+++||+++|+     ...........+....+......
T Consensus       237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~~~~~~l~~~~~~~~l~~~~~~  311 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TVRWFGGVGCGIFTLALYYIPQH  311 (402)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHc
Confidence             456667899999889999999999999999999999999999999999874     22111111111111111111111


Q ss_pred             CCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          319 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      . .+..+...+..++.|++.+...+  ......+.. +++|+++.|+.+....+++.++|.+.|.+.+. .|+
T Consensus       312 ~-~~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~  379 (402)
T TIGR00897       312 F-GHSFAVALIIAIALGIFLAGYVP--LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGA  379 (402)
T ss_pred             c-CCcHHHHHHHHHHHHHHHHHHHH--HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cch
Confidence            1 12233344566677777665544  345566654 46899999999999999999999999999998 564

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=8.2e-33  Score=269.40  Aligned_cols=351  Identities=14%  Similarity=0.167  Sum_probs=255.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      +.+..+.+..+..........+.+|.+.+++|.|.++.|++.+++.+++.++++++|+++||+|||+++..+..+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            45667777888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCch
Q 009914           86 FLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWR  165 (522)
Q Consensus        86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~  165 (522)
                      ++++++++++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..+++++++.+.+.     .+||
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~gwr  157 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-----FSWR  157 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-----ccHH
Confidence            99999999999999999999999998888889999999999999999999999999999999999999877     8999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc-chhHHH
Q 009914          166 ISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS-FPWSAL  244 (522)
Q Consensus       166 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  244 (522)
                      ++|++.+++.++..+..++..++++++  ++   .   +      .++.    .+.++++..+.......... ..+...
T Consensus       158 ~~f~~~~~~~~~~~~~~~~~lp~~~~~--~~---~---~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (382)
T PRK10091        158 YTFLLIAVFNIAVLASIYFWVPDIRDE--AK---G---G------LREQ----FHFLRSPAPWLIFAATMFGNAGVFAWF  219 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcc--cc---c---C------HHHH----HHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999888777666554433332111  00   0   0      0111    12345555554433332222 223334


Q ss_pred             HHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          245 SFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       245 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      ++.+.+++ ..|+++.+.+.+.....++.++++++.+++.||+++++     ...... .+..+.  .+.+....  +. 
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-----~~~~~~-~~~~i~--~~~~~~~~--~~-  288 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-----IAAVTD-FIIVLA--LLMLFFFG--GM-  288 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-----HHHHHH-HHHHHH--HHHHHHHH--hh-
Confidence            56666665 58999999999999999999999999999999998874     222211 111111  11111111  11 


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .+...+..++.+++.....++.......+..|++.++.+  ..+....+|.++||.+.|++.|...+|.
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~  355 (382)
T PRK10091        289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYN  355 (382)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcc
Confidence            222333344444444333331222344444455555544  3466788999999999999999756663

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.8e-33  Score=276.35  Aligned_cols=353  Identities=13%  Similarity=0.072  Sum_probs=269.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      +..+.+..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~   98 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG   98 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence            44555667777788888899999999999999999999999999999999999999999999999988888877776665


Q ss_pred             HHh-----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           88 VAF-----SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        88 ~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      .+.     .++++.+++.|++.|++.+...++..+++.+++|+++|+++.++.....++|..+||.+++.+.+.     .
T Consensus        99 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-----~  173 (417)
T PRK10489         99 LALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-----G  173 (417)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-----H
Confidence            442     467888999999999999998999999999999999999999999999999999999999999887     7


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhH
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWS  242 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (522)
                      +|++.|++.++..++..++.+.+++.++..++     +++    .   .++..+..+..+++|.++......+.......
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (417)
T PRK10489        174 GVAWNYGLAAAGTFITLLPLLRLPALPPPPQP-----REH----P---LRSLLAGFRFLLASPVVGGIALLGGLLTMASA  241 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-----ccc----c---hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence            99999999888777666665555543321110     000    0   12233344556677776555444333333345


Q ss_pred             HHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009914          243 ALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  321 (522)
Q Consensus       243 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (522)
                      ...+.|.|+++ +|.++.+.+++.+...++.+++.++.+++.||.++++     .+.... .+..+  ..+ .+..   .
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-----~l~~~~-~~~~~--~~~-~~~~---~  309 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-----LMLLST-LGSFL--AVG-LFGL---M  309 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-----HHHHHH-HHHHH--HHH-HHHc---c
Confidence            55678999986 8999999999999999999999999999998855442     222211 11111  111 1111   1


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          322 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ++.+...+..++.|++.+...+ ...+++.+..|++.||+++|+.+...+++..++|.+.|++.+. .|+
T Consensus       310 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~  377 (417)
T PRK10489        310 PMWILAVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTP  377 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hch
Confidence            2334455667777887776666 5678889999999999999999999999999999999999998 554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=6.7e-32  Score=260.17  Aligned_cols=383  Identities=12%  Similarity=0.063  Sum_probs=280.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++.+.+..++.++......+++++.+.+.+ ++|+|++|.+++.+++.+++.+..++.|++.||+|.|+++.++.++.++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            478888889999999999999999999876 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-----hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 009914           84 ATFLVAFS-----STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP---  155 (522)
Q Consensus        84 ~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~---  155 (522)
                      .++.++++     ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+..   
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999987     8999999999999998 77889999999999999999999999987777777766666554331   


Q ss_pred             --cc--------ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcch
Q 009914          156 --MT--------FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIP  225 (522)
Q Consensus       156 --~~--------~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (522)
                        ..        ..+..+||.++++..++.++..++.+++.++++..                   +...++.+..+|+|
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------------~~~~~~~~~vlk~~  252 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------------RASIADQLPVLQRL  252 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------------ccCHHHHHHHhCCC
Confidence              10        00124588888888888888777777765443221                   11123445678888


Q ss_pred             hHHHHHHHhhhccchhH-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHH
Q 009914          226 SFQIIVAQGVTGSFPWS-ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL  304 (522)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  304 (522)
                      ..|.+....++.+..+. ...++|.|.++ .++.........+..+...+.++++|+++||+|+++     .+.......
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-----vl~~~~i~~  326 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-----VTLINFIFM  326 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-----HHHHHHHHH
Confidence            88887766666665554 44589999875 334333333344556788889999999999999984     333322212


Q ss_pred             HHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCc---------------------chhHHH
Q 009914          305 SAIPLAALLLLVLPDD-PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE---------------------KSRTSV  362 (522)
Q Consensus       305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~  362 (522)
                      ...  ....+...+.. ..+.+.....++.+.++.+..+. ..+-++.+.+|+                     ++.|.+
T Consensus       327 ~i~--~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v  403 (462)
T PRK15034        327 AIF--SALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAA  403 (462)
T ss_pred             HHH--HHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHH
Confidence            111  11112222221 12334444444454555555555 566677777763                     257889


Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHhhCcccCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009914          363 YAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTY  440 (522)
Q Consensus       363 ~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (522)
                      .|+....+.+|+++.|.+.|...+...++                        ...+..+.+..++|.++.+..+.|.
T Consensus       404 ~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~------------------------~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        404 LGFISAIGAVGGFFIPQAFGMSLNMTGSP------------------------VGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             HHHHHHHHHcccchhhHHHHHHHHHcCCc------------------------HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999886555                        3345666666676777766665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=6.9e-32  Score=265.57  Aligned_cols=357  Identities=13%  Similarity=0.038  Sum_probs=270.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      +.....+.+..+...+....+.+.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   91 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT   91 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34455566666777778888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           85 TFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      .+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..+||.+++.+.+.     .+|
T Consensus        92 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~~w  166 (406)
T PRK15402         92 CLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-----LPW  166 (406)
T ss_pred             HHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCc
Confidence            999999999999999999999999998899999999999999999999999998999999999999999887     799


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHH
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSA  243 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  243 (522)
                      |+.|++.+++.++..+..++..++++...++    + .       +.++..++.+..+++|.++........... ....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGE----K-L-------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAW  234 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCccccc----c-c-------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            9999998888877766555433332211100    0 0       012334455677888887776554433333 2333


Q ss_pred             HHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 009914          244 LSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  322 (522)
Q Consensus       244 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (522)
                      ..+.|.+++ ++|+++.+.+.......++.+++.++.+++.||+++|+     ...... ....+........... ...
T Consensus       235 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-----~~~~~~-~~~~~g~~~~~~~~~~-~~~  307 (406)
T PRK15402        235 IALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-----LIRMGL-WPMVAGLLLAALATVI-SSH  307 (406)
T ss_pred             HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH-HHHHHHHHHHHHHHHc-ccc
Confidence            455787775 58999999998888888888999999999999998873     322221 1111111111111111 122


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ..+......++.|++.+...+ ......... +++++|++.++.+....++..+|+.+.+.+.+.
T Consensus       308 ~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        308 AYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            333355667778888877666 444444433 458899999999999999999999999999877

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.7e-32  Score=275.43  Aligned_cols=372  Identities=16%  Similarity=0.198  Sum_probs=281.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      ++.++.++++.++..++...+.+.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            44677788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           85 TFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      .+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+.+.     .+|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-----~gw  163 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-----ASW  163 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----ccH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987     899


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc---------------ccccchhhhh--h----------------
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD---------------QVSSKSFRSD--V----------------  211 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~----------------  211 (522)
                      |+.|++......+..+......++.+....+.+...               ...+...+..  .                
T Consensus       164 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (471)
T PRK10504        164 HWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL  243 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence            999999887776666665554333221111110000               0000000000  0                


Q ss_pred             HHHH----HHhhhhhcchhHHHHHHHhhhccchhH-HHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhH
Q 009914          212 KVLI----QEAKSVIKIPSFQIIVAQGVTGSFPWS-ALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF  285 (522)
Q Consensus       212 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  285 (522)
                      ++..    ....+++++|.+...+...++....+. ...+.|.|++ ..|.++.+.++......++.+++.++.+++.||
T Consensus       244 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r  323 (471)
T PRK10504        244 HARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR  323 (471)
T ss_pred             HHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000    001236788888777666555554443 3356888887 489999999999998888888898999999999


Q ss_pred             hhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHH
Q 009914          286 LSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM  365 (522)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  365 (522)
                      +++|+     .+..... +..+  ....+..... ..+.+......++.|++.+...+ ....+..+.+|++.+++++|+
T Consensus       324 ~g~~~-----~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~  393 (471)
T PRK10504        324 FGYRR-----VLVATTL-GLAL--VSLLFMLVAL-LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSL  393 (471)
T ss_pred             cCchH-----HHHHHHH-HHHH--HHHHHHhccc-cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHH
Confidence            99883     3322211 1111  1111112221 22233233455666777776666 677888899999999999999


Q ss_pred             HHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          366 DRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       366 ~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .++...++..+|+.+.|.+.+. .|+.
T Consensus       394 ~~~~~~~g~~ig~~i~g~ll~~-~g~~  419 (471)
T PRK10504        394 LSMIMQLSMSIGVTIAGLLLGL-FGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hhhh
Confidence            9999999999999999999998 5663

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=3.8e-34  Score=286.54  Aligned_cols=377  Identities=14%  Similarity=0.114  Sum_probs=274.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHH----------------------hcCCChhhhHHHHHHHHHHHHhhhh
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGA----------------------ALHTDPTGLGSLTLFRSIVQASCYP   59 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~~~s~~~~~~~i~~~   59 (522)
                      +.|+....+++++..+++.++..++...+.+.+                      +++++..+.|++.+.+.+++.++++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~   94 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI   94 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence            356778888889999999999999988888876                      7899999999999999999999999


Q ss_pred             hHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHH
Q 009914           60 IAAYLAIRHNRAHVIALGAFLWAAATFLVAFS--STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQL  137 (522)
Q Consensus        60 ~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  137 (522)
                      +.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.+++|+++|++++++...
T Consensus        95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  174 (465)
T TIGR00894        95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS  174 (465)
T ss_pred             chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999988887554  5688899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccccCCC-CchHHHHHHHHHHHHHHHhhhhccCC-CCCCCCCCCCCccc---ccchhhhhhH
Q 009914          138 TSNIGSLVGGLFSVVMAPMTFMGIP-GWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQV---SSKSFRSDVK  212 (522)
Q Consensus       138 ~~~lg~~~g~~l~~~l~~~~~~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~  212 (522)
                      +..+|.++++++++.+.+.     . +||++|++.+++.++..++.+.++++ |+..+..++.+++.   ..+....+ .
T Consensus       175 ~~~~g~~i~~~l~~~l~~~-----~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~-~  248 (465)
T TIGR00894       175 GFQLGTFIFLPISGWLCES-----WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGS-T  248 (465)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCC-C
Confidence            9999999999999998875     4 99999999999888877777665544 33222111100000   00000000 0


Q ss_pred             HHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcC
Q 009914          213 VLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  290 (522)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  290 (522)
                      +....++++++++.++......+.... .+...+|+|.|++ .+|++..+.++..++..++.+++.++.|+++||+++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            001124567788887777665555444 4566689999996 58999999999999999999999999999999988765


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHH
Q 009914          291 PNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE  370 (522)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  370 (522)
                      ....+..................+.. .......+....++.+.+.+.+...+ .......+..| +.+|.+.|+.+..+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~  405 (465)
T TIGR00894       329 TLSLTAARKIFNGIGGLGPGIFAYAL-PYLSAAFYLTIIILTLANAVSSGPLA-GVLINSLDLAP-RFLGFIKGITGLPG  405 (465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHHhhhhhh-hhhhchhhcCh-hHHHHHHHHHHHHH
Confidence            43222111111111111111111111 11112222233344444444444444 44555667776 48999999999999


Q ss_pred             HHHhchhhHHHHHHHHH
Q 009914          371 SILSSFAPPVVGILAQH  387 (522)
Q Consensus       371 ~~~~~i~~~~~g~l~~~  387 (522)
                      .+++.++|.+.|.+.+.
T Consensus       406 ~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       406 FIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHHHHhhheeeCC
Confidence            99999999999988765

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.5e-32  Score=269.39  Aligned_cols=365  Identities=15%  Similarity=0.174  Sum_probs=248.8

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHH-HHH-----HHHHHhhhhhHHHHHHHhchhHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLT-LFR-----SIVQASCYPIAAYLAIRHNRAHVIAL   76 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-s~~-----~~~~~i~~~~~G~l~Dr~grr~~l~~   76 (522)
                      .|++....++++.+++++++..+++..|.+.++++.++.+.+.+. +..     .+...+++++.|+++||+|||+.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            466778889999999999999999999999999999888765443 222     22334678999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914           77 GAFLWAAATFLVAFSSTFA--------QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGL  148 (522)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~  148 (522)
                      +.++++++.++++++++++        .++++|+++|++.+...+....++.|++|+++|++++++...+.++|..+++.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999877        46889999999999999999999999999999999999999999998888888


Q ss_pred             HHHhhhcccc---cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcch
Q 009914          149 FSVVMAPMTF---MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIP  225 (522)
Q Consensus       149 l~~~l~~~~~---~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (522)
                      +++.+.....   ....|||++|++..+...+. ......++|.+....+   ++ +   ...   ++..   +...+++
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~---~~-~---~~~---~~~~---~~~~~~~  237 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLAR---KH-R---PSM---REIF---RSLAANW  237 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHh---hh-c---ccc---ccHH---HHHHHhH
Confidence            8877642100   01279999999754432221 1111112111000000   00 0   000   1111   1122232


Q ss_pred             hHHHH-HHHh-hhccchhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHH
Q 009914          226 SFQII-VAQG-VTGSFPWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  302 (522)
Q Consensus       226 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  302 (522)
                      ..+.. +... +.....+....|.|.|+++ +|++..+.++......++.+++.++.|+++||+++|+     .......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~~~~~  312 (434)
T PRK15075        238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-----VLIAFTV  312 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHH
Confidence            22222 2222 2222234566789999975 8999999998888889999999999999999999884     3322211


Q ss_pred             HHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHH-HhchhhHHH
Q 009914          303 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVV  381 (522)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~~  381 (522)
                      . ... .....+......+ ..........+.+++.+...+ ....+..|.+|++.|+++.|+.+.+... ++.++|.+.
T Consensus       313 ~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~  388 (434)
T PRK15075        313 L-AIL-TAYPALSWLVAAP-SFARMLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS  388 (434)
T ss_pred             H-HHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence            1 111 1111111111112 222222333444555555555 5667889999999999999997666654 588899999


Q ss_pred             HHHHHHhhCc
Q 009914          382 GILAQHVYGF  391 (522)
Q Consensus       382 g~l~~~~~g~  391 (522)
                      |++.|. .|+
T Consensus       389 g~i~~~-~g~  397 (434)
T PRK15075        389 TWLIHV-TGD  397 (434)
T ss_pred             HHHHHh-cCC
Confidence            999998 454

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.4e-32  Score=275.26  Aligned_cols=373  Identities=14%  Similarity=0.148  Sum_probs=254.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc--------CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAAL--------HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIAL   76 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~   76 (522)
                      .+..++..++.+..+++....++..|.+.+.+        +.++.+.+++.+++.++..++++++|+++||+|||+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45667777888999999999999999998887        8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHH
Q 009914           77 GAFLWAAATFLVAFS------------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSL  144 (522)
Q Consensus        77 ~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~  144 (522)
                      +.++.+++.+++++.            +.++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+|.+
T Consensus        91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            999999888877763            23567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccc---ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccc----------ccchhhhhh
Q 009914          145 VGGLFSVVMAPMT---FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQV----------SSKSFRSDV  211 (522)
Q Consensus       145 ~g~~l~~~l~~~~---~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  211 (522)
                      +++.++..+....   .....+||++|++.++..++..+..++++++|++...+++.++.+          ..+...++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI  250 (479)
T ss_pred             HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHH
Confidence            9988877654211   012369999999988888777766666776664321111111100          000001111


Q ss_pred             HHHHHHhh----hhhcchhHHHHH--HH-hhhccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhh
Q 009914          212 KVLIQEAK----SVIKIPSFQIIV--AQ-GVTGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMG  283 (522)
Q Consensus       212 ~~~~~~~~----~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  283 (522)
                      ++..+..+    ..+.........  .. .+.... .+....+.|.+.++.|++....+......++..+++.++.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~  330 (479)
T PRK10077        251 KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTV  330 (479)
T ss_pred             HHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111000    001000000000  00 000011 12233456888788899887777777788889999999999999


Q ss_pred             hHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHH
Q 009914          284 DFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY  363 (522)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (522)
                      ||+++|+     ...... .+..+....+....... ... .......++.+++.+....+..+.++.|.+|++.|+++.
T Consensus       331 dr~g~r~-----~~i~~~-~~~~v~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  402 (479)
T PRK10077        331 DKFGRKP-----LQIIGA-LGMAIGMFSLGTAFYTQ-APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL  402 (479)
T ss_pred             HHhcChH-----HHHHhH-HHHHHHHHHHHHHHhcC-ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHH
Confidence            9999883     332222 22222111111111111 111 122233444444444332226789999999999999999


Q ss_pred             HHHHHHHHHHhchhhHHHHHHH
Q 009914          364 AMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       364 g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      |+.+...+++..+++.+.+.+.
T Consensus       403 g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        403 AIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999987776554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=260.97  Aligned_cols=349  Identities=17%  Similarity=0.150  Sum_probs=259.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH
Q 009914            1 MKQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL   80 (522)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~   80 (522)
                      |++..+.+..+.++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~   80 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI   80 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            66777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009914           81 WAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG  160 (522)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~  160 (522)
                      .+++.++++++++++.+++.|+++|++.+...+...+.+.+..++++|++++++...+.++|..+|+.+++.+.+.    
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  156 (381)
T PRK03633         81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE----  156 (381)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence            9999999999999999999999999999999998888888889999999999999999999999999999998764    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-  239 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (522)
                       ..|...+. .+........+ .+...+++. .++   +   +.    .       +.++.+++|.++......+.... 
T Consensus       157 -~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~~---~---~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~  215 (381)
T PRK03633        157 -LMSVLPWV-TGLVLAAILPL-LFTRILNQQ-AEN---H---DS----T-------SIWPMLKLRQARLGVNGCIISGIV  215 (381)
T ss_pred             -ccchHHHH-HHHHHHHHHHH-HHhcccCCC-CCC---C---CC----C-------CHHHHHHhcchHHHHHHHHHHHHH
Confidence             33333332 22222211111 121111111 100   0   00    0       01223455555544332222222 


Q ss_pred             hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 009914          240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (522)
                      .....+++|.|+++.|.++.+.+.+.+...++.+++++..+++.||+++|+     .+..... ...+  ......    
T Consensus       216 ~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-----~l~~~~~-~~~~--~~~~~~----  283 (381)
T PRK03633        216 LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-----VLRVQVF-VVIL--GSIAML----  283 (381)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-----HHHHHHH-HHHH--HHHHHh----
Confidence            234456789999888999999999999999999999999999999999883     2222111 1111  111111    


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          320 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                       ....  ......+.|++.....| ...+.+.|..|+++++...+..+...++|..++|.+.|++.|+ .|+
T Consensus       284 -~~~~--~~~~~~l~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~  350 (381)
T PRK03633        284 -SQAA--MAPALFILGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSD  350 (381)
T ss_pred             -hhHH--HHHHHHHHHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCc
Confidence             1111  22344455655555556 6778888999888888888888888899999999999999998 564

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=5.4e-32  Score=267.77  Aligned_cols=366  Identities=14%  Similarity=0.119  Sum_probs=251.7

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhc--CCChhhhHHHH-----HHHHHHHHhhhhhHHHHHHHhchhHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKE-VGAAL--HTDPTGLGSLT-----LFRSIVQASCYPIAAYLAIRHNRAHVI   74 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~g~~~-----s~~~~~~~i~~~~~G~l~Dr~grr~~l   74 (522)
                      ++++.+....++.++++++...++.+.|. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            35667788888999999999999988875 45555  67766 45553     345566778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHH
Q 009914           75 ALGAFLWAAATFLVAFSSTFA--------QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVG  146 (522)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g  146 (522)
                      .++.+++++++++++++++++        .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccc---cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhc
Q 009914          147 GLFSVVMAPMTF---MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIK  223 (522)
Q Consensus       147 ~~l~~~l~~~~~---~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (522)
                      ..+...+.....   ...+|||++|++.+++.++...+....+|+|++.+.+.+.++.+++.          ...+.+++
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~----------~~~~~l~~  247 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRI----------PVIEALLR  247 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccC----------CHHHHHHH
Confidence            877776543100   01279999999988776554333223344333211111100000000          00112334


Q ss_pred             chhHHHHHH-Hhh-hccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHH
Q 009914          224 IPSFQIIVA-QGV-TGSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ  300 (522)
Q Consensus       224 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  300 (522)
                      ++..+.... ..+ .....+...+|.|.|++ ++|++......+....++..+++.++.|+++||++||+     .....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-----~~~~~  322 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-----VYITG  322 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHH
Confidence            444443322 222 22234566678898885 58888876666666667778888899999999999884     33322


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHH-HHhchhhH
Q 009914          301 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES-ILSSFAPP  379 (522)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~i~~~  379 (522)
                      ..  +............. ..+..+.+....++.+++.+...+ ..++++.|.+|++.|+++.|+.+.... +++.++|.
T Consensus       323 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~  398 (438)
T PRK09952        323 AL--IGTLSAFPFFMALE-AQSIFWIVFFSIMLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPF  398 (438)
T ss_pred             HH--HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHH
Confidence            11  11111111111111 122233333444555666666555 678899999999999999999776655 88999999


Q ss_pred             HHHHHHHHh
Q 009914          380 VVGILAQHV  388 (522)
Q Consensus       380 ~~g~l~~~~  388 (522)
                      +.|++.+..
T Consensus       399 i~g~l~~~~  407 (438)
T PRK09952        399 IAAALVTYF  407 (438)
T ss_pred             HHHHHHHhc
Confidence            999999863

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=5.2e-33  Score=271.62  Aligned_cols=366  Identities=20%  Similarity=0.214  Sum_probs=271.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhh
Q 009914           13 LAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSS   92 (522)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~   92 (522)
                      ++++...++...+.+..|.+.+++|.|+.+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            35667788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHH-HHHHhhhcccccCCCCchHHHHHH
Q 009914           93 TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGG-LFSVVMAPMTFMGIPGWRISFHIV  171 (522)
Q Consensus        93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~-~l~~~l~~~~~~~~~gw~~~f~~~  171 (522)
                      +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++ .++..+...     .+||+.|++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~  156 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWHWVFIVP  156 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 566666665     7999999998


Q ss_pred             HHHHHHHHHhhhhccCC-CCCCCCCCCCC---cc--cccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHH
Q 009914          172 GLISVVVGTLVRLFAND-PHFPDGGTANS---DQ--VSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSAL  244 (522)
Q Consensus       172 ~~~~~i~~~~~~~~~~~-~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  244 (522)
                      +++.++..++.++..++ |+....+..++   ++  +..+...++.+......+..+++|.++.+....+.... .....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (379)
T TIGR00881       157 GIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL  236 (379)
T ss_pred             HHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            88877766666554433 32211110000   00  00000000001111233456677777766554444433 34566


Q ss_pred             HHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          245 SFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       245 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      .+.|.|++ .+|++..+.+.......++.+++.++.+++.||..+++.    ....... ..... .......... ...
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----~~~~~~~-~~~~~-~~~~~~~~~~-~~~  309 (379)
T TIGR00881       237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR----GPLAVFF-MALII-VSLLVYWLNP-AAN  309 (379)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc----hHHHHHH-HHHHH-HHHHHHhcCc-chh
Confidence            78899886 589999999999999999999999999999998654431    1111111 11111 1111111111 122


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .+......++.|+......+ ....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.|. .||.
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~  376 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWA  376 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hccc
Confidence            33344455556655444444 4567889999999999999999999999999999999999998 6764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=5.7e-33  Score=268.45  Aligned_cols=346  Identities=27%  Similarity=0.382  Sum_probs=263.8

Q ss_pred             HHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   89 (522)
                      ++++.++..+......+.+| .+.+++|.|+.+++++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            35677888888888999999 89999999999999999999999999999999999999999999999999999966666


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHH
Q 009914           90 FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFH  169 (522)
Q Consensus        90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~  169 (522)
                      ++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.....++|.++++.+++.+.+.     .+||+.|+
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~~~~~~~~  155 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----FGWRWAFL  155 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----CHHCCHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-----cccccccc
Confidence            6688889999999999999999999999999999999999999999999999999999999999877     89999999


Q ss_pred             HHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHH-HhhhhhcchhHHHHHHHhhhcc-chhHHHHH
Q 009914          170 IVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQ-EAKSVIKIPSFQIIVAQGVTGS-FPWSALSF  246 (522)
Q Consensus       170 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  246 (522)
                      +.+++.++..++... ++++++..+.+++.+++++.       ++... ..+..++++.++..+...+... .......+
T Consensus       156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF07690_consen  156 ISAILSLIAAILFILFLPEPPPPRERESPKESESKK-------PKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF  228 (352)
T ss_dssp             HHHHHHHHHHHHHHCCC---STTTT--SSTTTT--H-------HHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhHhhhhhhccccccccccccccccc-------ccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence            999998888775434 33333222222111110001       11111 2445556665553333333333 34456678


Q ss_pred             HHHHH-HHhCCC-hhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          247 AAMWL-ELTGFS-HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       247 ~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      .|.|+ +++|++ ..+.+.+..+..+..+++.++.+++.||+++++     .......... +  ....+. ......+.
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~-~--~~~~~~-~~~~~~~~  299 (352)
T PF07690_consen  229 LPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----RLLIAILLLI-L--GALGLL-LLPFSSSP  299 (352)
T ss_dssp             HHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHH-H--HHHHHC-CSHHHCHH
T ss_pred             cchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHH-H--HHHHHH-HHHHhhhH
Confidence            89985 578999 789999999999999999999999999998763     2222111111 1  111111 11111233


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhh
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  378 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~  378 (522)
                      .......++.|++.+...+ ...+++.+.+|++++|++.|+.+...++++.++|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4455677788888888888 8899999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=9.2e-32  Score=264.26  Aligned_cols=347  Identities=17%  Similarity=0.185  Sum_probs=253.1

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      +.++.+..+.+..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            45677888899999999999998888886 57889999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhh--------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           82 AAATFLVAFS--------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        82 ~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      +++.+.+.++        .+++.+++.|+++|++.+...+...+++.+++|+++|++++++......+|.++|+.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8776665543        25678899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHH
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ  233 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (522)
                      .+.     .||+..+++.+++.++..+.....   |+..+.+    +  ++.    +.++..   +..++..     ...
T Consensus       172 ~~~-----~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~--~~~----~~~~~~---~~~~~~~-----~~~  225 (399)
T PRK05122        172 YHW-----GGLAGLGLLIMLLALLGLLLARPR---PAVPPVK----G--ERL----PFRRVL---GRVWPYG-----MGL  225 (399)
T ss_pred             HHc-----ccHHHHHHHHHHHHHHHHHHHhcC---CCCCCCC----c--cch----hHHHHH---HHHHHHH-----HHH
Confidence            887     899999888766554433332211   2111110    0  000    111111   1111111     111


Q ss_pred             hhhccchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          234 GVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      .+..........+.|.|+++.|.+  ..+.......++.+++.++.+++.||+++|+     ...... .+.....  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~~~~-~~~~~~~--~~  295 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-----VAIVSL-LVEILGL--LL  295 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHH-HHHHHHH--HH
Confidence            111111223446778888776663  4566677788888999999999999998873     322221 1111111  11


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +. .  . ++.+...+..++.|++.+...+ .......+..|++.|+++.|+.+....++..++|++.|.+.+. .||
T Consensus       296 ~~-~--~-~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~  367 (399)
T PRK05122        296 LW-L--A-PSPWMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGY  367 (399)
T ss_pred             HH-H--h-ccHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCH
Confidence            11 1  1 2233355667788888877766 5667778889999999999999999999999999999999988 565

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1e-31  Score=263.03  Aligned_cols=355  Identities=16%  Similarity=0.153  Sum_probs=270.5

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++++.+..+....+..........+..|.+.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   81 (385)
T TIGR00710         2 SAKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA   81 (385)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            45555556666667777788888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+.     .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~  156 (385)
T TIGR00710        82 LSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----L  156 (385)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PW  241 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (522)
                      +||+.|++.+++.++..+..++..++++..+++      +       +.++..+..+..++++.++........... .+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
T TIGR00710       157 SWHAIFAFLSLAGILLSALIFFILPETLPYEAR------I-------QISTYFETFLLLLKSKMFWGYALIYGASFGGFF  223 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc------C-------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            999999998888777776665544333221110      0       002223445566777777665544333332 34


Q ss_pred             HHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          242 SALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       242 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      ....+.|.+++ ++|.++.+.+.+.....++.+++.++.+++.||+++|+     ...... ................ .
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~-~  296 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-----LLRMGL-ILFAVSAVLLEITAIL-G  296 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH-HHHHHHHHHHHHHHHh-c
Confidence            44556788776 68999999999999999999999999999999999884     222221 1111111111111111 1


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      ...........++.|++.+...+ .......|..| +.++++.++.+.....++.+.+++.+.+
T Consensus       297 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       297 LGSWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            12233344556667777777777 66777778776 6799999999999887777777776643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=2.5e-31  Score=261.27  Aligned_cols=352  Identities=16%  Similarity=0.094  Sum_probs=265.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      ...+..+.+...+..+...++.+.+|.+.+++|.++++.|++.+++.++..++++++|+++||+|||+++..+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   84 (401)
T PRK11043          5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG   84 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence            33444444445556667778888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           85 TFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      .+++.++++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.     .+|
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~  159 (401)
T PRK11043         85 SLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-----FGW  159 (401)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCh
Confidence            999999999999999999999998888888889999999999999999999999999999999999999887     899


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhh-ccchhHH
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT-GSFPWSA  243 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  243 (522)
                      |+.|++.+++.++..+..++++++++..++                 ++.....++.++++.++........ ....+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (401)
T PRK11043        160 QAIFATLFAITLLLILPTLRLKPSKKARKQ-----------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAW  222 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcccc-----------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            999999988888777666655544321110                 0011234455666666543332222 2223445


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          244 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      ..+.|.++++.|++..+.+.......++.++++++.+++.||+++|+     ....... ...+............ ...
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~-~~~  295 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ-----LLPWLLV-LFAVSVIAIWLASLLS-HPS  295 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHHHHHH-HHHHHHHHHHHHHHhc-cCc
Confidence            56788888889999999999888888888999999999999998773     2221111 1111111111111111 122


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .+.......+.+++.+...+ ...+...+..| ++++++.|+.+.++..++..++.+.|.+.+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            33344555667777777777 66666667666 5799999999999998999999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=5.2e-32  Score=273.37  Aligned_cols=368  Identities=14%  Similarity=0.158  Sum_probs=281.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      +.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCch
Q 009914           86 FLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWR  165 (522)
Q Consensus        86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~  165 (522)
                      ++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++.+.     .+||
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~w~  156 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-----YHWR  156 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-----cCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887     8999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc----------------ccccchhhhhhHH---------------H
Q 009914          166 ISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD----------------QVSSKSFRSDVKV---------------L  214 (522)
Q Consensus       166 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------------~  214 (522)
                      +.|++.+.+.++..++..+..+++++...++.+..                .+.++..+.+...               .
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (485)
T TIGR00711       157 WIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV  236 (485)
T ss_pred             ehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99999888877776666554433222111110000                0000000000000               0


Q ss_pred             HHH--------hhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhh
Q 009914          215 IQE--------AKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGD  284 (522)
Q Consensus       215 ~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  284 (522)
                      .++        ..+.++++.++......+.... .+....++|.|+++ +|+++.+++.......++.+++.++.|++.|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~  316 (485)
T TIGR00711       237 VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD  316 (485)
T ss_pred             HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000        1235667766665444443333 45556778999975 8999999999999999999999999999999


Q ss_pred             HhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHH
Q 009914          285 FLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYA  364 (522)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (522)
                      |+++|+     ...... .+.  .+....+..........+......++.|++.+...+ .......+..|+++++++.|
T Consensus       317 r~~~~~-----~~~~g~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~-~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       317 KIDPRK-----LVTIGL-ILY--AVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFM-PLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             hcCcHH-----HHHHHH-HHH--HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHhHHHH
Confidence            999883     222211 111  111111111111222333344557778888877665 46677778889999999999


Q ss_pred             HHHHHHHHHhchhhHHHHHHHHH
Q 009914          365 MDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       365 ~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.+....+|+.+|+.+.|.+.++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=4.2e-31  Score=258.80  Aligned_cols=345  Identities=16%  Similarity=0.173  Sum_probs=247.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      .+.+..+.++.++..+...+..+.+|. +.+++|.|++++|++.+++.+++.++++++|+++||+|||++++.+.+...+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL   93 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence            345666777777888877888888886 5789999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHh--------hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914           84 ATFLVAF--------SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus        84 ~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      +.+.+..        .++++.+++.|+++|++.+...+...+++.+++|+++|++++++.+.+..+|.++||++++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382         94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            5543321        35788999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhh
Q 009914          156 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV  235 (522)
Q Consensus       156 ~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (522)
                      .     .||+..+.+..+..++........++++   +++    ++  +.    +.++..   +..++ +.+...+    
T Consensus       174 ~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~--~~----~~~~~~---~~~~~-~~~~~~l----  227 (392)
T PRK12382        174 H-----FGFAALALTTMVLPLLAWAFNGTVRKVP---AHA----GE--RP----SLWSVV---GLIWK-PGLGLAL----  227 (392)
T ss_pred             c-----cChHHHHHHHHHHHHHHHHHHHhccCCC---CCc----cc--Cc----hHHHHH---HHHHH-hHHHHHH----
Confidence            7     8999887766554433332222122111   110    00  00    111111   11111 1111111    


Q ss_pred             hccchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009914          236 TGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL  315 (522)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (522)
                      ..........+.|.|+++.|++.  .+.......++.++++++.|++.||+++|+     ....... +....  .....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~~-~~~~~--~~~~~  297 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-----VAIVSLL-VETVG--LLLLW  297 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-----ehHHHHH-HHHHH--HHHHH
Confidence            11112334567788887777654  456666677888899999999999999875     2222211 11111  11111


Q ss_pred             hCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          316 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                       .  .+ +.+......++.|++.+...+ ...+.+.+..|+++||++.|+.+....++..++|.+.|++.|. .||
T Consensus       298 -~--~~-~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~  367 (392)
T PRK12382        298 -L--AP-TAWVALAGAALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGY  367 (392)
T ss_pred             -H--cc-cHHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCc
Confidence             1  12 233345566777888777666 6677888999999999999999999999999999999999998 676

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-32  Score=247.78  Aligned_cols=359  Identities=18%  Similarity=0.142  Sum_probs=286.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      +.+++.+.+..++..+.+....+++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34567888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009914           82 AAATFLVAFSS---TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        82 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~  158 (522)
                      .+-++..+++.   +++++++.+++.|++ |..+....++++.++||+++|.++|+.. ..++|..+..+++..+...  
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~--  165 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA--  165 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH--
Confidence            99999988875   456999999999998 6677788899999999999999999999 9999999999999988877  


Q ss_pred             cCCCC---chHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHH-HHhhhhhcchhHHHHHHHh
Q 009914          159 MGIPG---WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLI-QEAKSVIKIPSFQIIVAQG  234 (522)
Q Consensus       159 ~~~~g---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  234 (522)
                         .+   |+.+..+..+..++..++.++..+|.+..+...               ++.. .+.+.+++++..|.+.+..
T Consensus       166 ---~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~---------------~~~~~~~~~~v~~~~~~W~lsllY  227 (417)
T COG2223         166 ---FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV---------------KPQLPAQLKAVFSNKDTWLLSLLY  227 (417)
T ss_pred             ---HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc---------------cccchhHHHHHhcCcchHHHHHHH
Confidence               67   999999999988888888888766643321111               1111 4455667777777776666


Q ss_pred             hhccch-hHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 009914          235 VTGSFP-WSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  312 (522)
Q Consensus       235 ~~~~~~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (522)
                      +..+.. -+...++|.|++ ++|.+..++|.+.+...+.+.+.+.++|+++||+|.++     .+.......... ....
T Consensus       228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----v~~~~f~~~~~~-~~~l  301 (417)
T COG2223         228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----VTLAVFVGMALA-AALL  301 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-----HHHHHHHHHHHH-HHHH
Confidence            555554 455678999997 69999999999999999999999999999999999884     333322222211 1111


Q ss_pred             HHHhCCCC--CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          313 LLLVLPDD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       313 ~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      . ...+..  ..+.+.....++..+++.+..+. ..+.++..++| ++.|.+.|+...++.+|+..-|...|...+.+..
T Consensus       302 ~-~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         302 S-LFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             H-ccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            1 111111  13344455556666777777666 67788888886 5789999999999999999999999999999543


Q ss_pred             c
Q 009914          391 F  391 (522)
Q Consensus       391 ~  391 (522)
                      +
T Consensus       379 ~  379 (417)
T COG2223         379 Y  379 (417)
T ss_pred             H
Confidence            3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.1e-30  Score=256.23  Aligned_cols=348  Identities=13%  Similarity=0.081  Sum_probs=256.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS   91 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   91 (522)
                      .+..+...+......+.+|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            44445566677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHH
Q 009914           92 STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIV  171 (522)
Q Consensus        92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~  171 (522)
                      ++++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..+||++++.+.+.     .|||+.|++.
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----~gw~~~f~~~  176 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----VHWKVLFAII  176 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHH
Confidence            99999999999999998877777788999999999999999999999999999999999999876     7999999999


Q ss_pred             HHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHH
Q 009914          172 GLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAM  249 (522)
Q Consensus       172 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  249 (522)
                      +++.++..+..++ +|++++. ++     +..       +.+...++++..+++|.++........... .+....+.|.
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~~-~~-----~~~-------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~  243 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVKR-GA-----VPF-------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPV  243 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCccc-cC-----CCC-------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            9888777665444 4433221 10     000       013344566778899998876665444443 3444566788


Q ss_pred             HHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHH-HHHHHHHHHHHHHHHhCCCCCchhHHH
Q 009914          250 WLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ-ISSLSAIPLAALLLLVLPDDPSTPVMH  327 (522)
Q Consensus       250 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (522)
                      ++++ +|+++.+.++.......+.+++..+.+++.++..+++     ..... .....+..+........   .+.++..
T Consensus       244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~~~ig~~l~~~~~~~~---~~~~~~~  315 (413)
T PRK15403        244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR-----FIWRAVPIQLVGLALLIVGNLLW---PHVWLWS  315 (413)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-----HHHHHHHHHHHHHHHHHHHHHHc---cccHHHH
Confidence            8875 6999999999988888888887777777654433321     21111 11111111111111111   2223324


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          328 GLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ....++.+++.+...+ ....... .-.+..+|++.|+.+.....+..+++...|++.+.
T Consensus       316 ~~~~~l~~~G~~~~~p-~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        316 VLGTSLYAFGIGLIFP-TLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHHhH-HHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566667777776666 4443222 11233579999999999999999999999988776

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1.1e-30  Score=255.24  Aligned_cols=347  Identities=12%  Similarity=0.070  Sum_probs=254.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      .++....++.........+.++ ++.+++|+|+.++|++.+...+...+.+++.|+++||+|||+++..+.++.+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            4455666666666666555555 567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      +.+.++++.+++.|+++|++.+...+...+++.+++|+++|++++++.....++|..+||.+++.+. .     .+||+.
T Consensus        93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-----~g~~~~  166 (400)
T PRK11646         93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-----YDFRLV  166 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 4     799999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHH
Q 009914          168 FHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSF  246 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  246 (522)
                      |++.++..++..++..+..++++..  +.       +       ++..+..+..+++|.++......+.... ......+
T Consensus       167 f~~~~~~~~~~~i~~~~~~~~~~~~--~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (400)
T PRK11646        167 CATGAVLFVLAAAFNAWLLPAYKLS--TV-------R-------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLM  230 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccc--cc-------c-------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887776655544433322110  00       0       0111234456677776654433322222 2233457


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhH-hhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      .|.|+++.+.++.+.+.+.+...+....+....+++.|| ++.++     ..... ..+.++  .... ...  .++ .+
T Consensus       231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~-~~~~~~--~~~~-l~~--~~~-~~  298 (400)
T PRK11646        231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-----RLMAG-LLIMSL--SMFP-IGM--VSN-LQ  298 (400)
T ss_pred             hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----HHHHH-HHHHHH--HHHH-HHH--hhh-HH
Confidence            899988766677888888888777666555555555554 43331     22111 111111  1111 111  122 23


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      .......+.+++.+...+ ...+++.+..|++++|+++|+.+....++..+||.+.|++.|...+
T Consensus       299 ~~~~~~~l~~~g~~~~~p-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~  362 (400)
T PRK11646        299 QLFTLICLFYIGSIIAEP-ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA  362 (400)
T ss_pred             HHHHHHHHHHHHHHHHHc-cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence            233445566677666666 6789999999999999999999999999999999999999998543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.7e-31  Score=264.87  Aligned_cols=371  Identities=16%  Similarity=0.147  Sum_probs=260.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++..+..+.+.+...+.....+....|.+.+ +|.++++.|++.+++.++..++.++.|+++||+|||+++..+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3555666667777777777777788888876 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh----hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-ccc
Q 009914           84 ATFLVAFS----STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP-MTF  158 (522)
Q Consensus        84 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~-~~~  158 (522)
                      +.+++++.    ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+.... .  
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~--  181 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF--  181 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh--
Confidence            88887764    4677788999999999999999899999999999999999999999999999999887765443 3  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhccCC-CCCCCCCC----CCCc-cc--ccchhhhhhHHHHHHhhhhhcchhHHHH
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGT----ANSD-QV--SSKSFRSDVKVLIQEAKSVIKIPSFQII  230 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (522)
                         .+||..|++.++++++..++.+++.++ |+....++    +.+. .+  ++.+...+.++..  .+..++++.++..
T Consensus       182 ---~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  256 (438)
T TIGR00712       182 ---NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIF--MQYVLPNKLLWYI  256 (438)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHH--HHHHccCchHHHH
Confidence               689999999988888776655554433 32211000    0000 00  0000000111111  1246788877776


Q ss_pred             HHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 VAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      ....++... .++..++.|.|+++ .|+++.++++...+..+++++++++.|++.||+++++.    .......... ..
T Consensus       257 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----~~~~~~~~~~-~~  331 (438)
T TIGR00712       257 AIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR----GATGVFFMTL-VT  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----cHHHHHHHHH-HH
Confidence            554444333 45667889999975 79999999999999999999999999999999965432    2211111111 11


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHh-chhhHHHHHHHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQH  387 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~i~~~~~g~l~~~  387 (522)
                      .....+. .....+ .+......+..|++...... .......|.+|++.|+++.|+.+...++++ +++|.+.|.+.|+
T Consensus       332 ~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~  408 (438)
T TIGR00712       332 IAVIVYW-MNPAGN-PLVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  408 (438)
T ss_pred             HHHHHHH-hcCCCc-hHHHHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence            1111111 111112 22223334444543322212 123457789999999999999999988875 6899999999998


Q ss_pred             hhCc
Q 009914          388 VYGF  391 (522)
Q Consensus       388 ~~g~  391 (522)
                       .||
T Consensus       409 -~g~  411 (438)
T TIGR00712       409 -FGW  411 (438)
T ss_pred             -ccc
Confidence             565

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=4e-32  Score=267.18  Aligned_cols=363  Identities=21%  Similarity=0.231  Sum_probs=268.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +++.+....+..+..+++.....+..|.+.+++|.++.+.|++.+...++..++.++.|+++||+|||+.+..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            44566666777778888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.+++.+.++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.     .+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g  169 (398)
T TIGR00895        95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-----FG  169 (398)
T ss_pred             HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-----cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887     89


Q ss_pred             chHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCC------------------cccccchhhhhhHHHHHHhhhhhcc
Q 009914          164 WRISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANS------------------DQVSSKSFRSDVKVLIQEAKSVIKI  224 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (522)
                      |+..|++.+++.++..++.+. +++.++....+++++                  ...+.+...+..++..+..+...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
T TIGR00895       170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA  249 (398)
T ss_pred             ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhH
Confidence            999999987666665555544 443332111110000                  0000000000111111111111112


Q ss_pred             hhHHHHHHHhhhc-cchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHH
Q 009914          225 PSFQIIVAQGVTG-SFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  303 (522)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  303 (522)
                      +..+.+....+.. ...+....+.|.+.++.|++..+.+.......++.+++.++.+++.||+++|+     ......  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~--  322 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-----TALLLL--  322 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-----HHHHHH--
Confidence            2222222222222 22344556788777789999999999999999999999999999999998872     222211  


Q ss_pred             HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHH
Q 009914          304 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  383 (522)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~  383 (522)
                      +..+. ...... .   ..+........++.|++.+...+ ...+++.|.+|++.|+++.|+.+.+..++..++|.+.|+
T Consensus       323 ~~~~~-~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       323 LGAVF-AVLVGS-T---LFSPTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHH-HHHHHH-H---hhCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            11111 111111 1   12233355667778888887777 788999999999999999999999999999999999987


Q ss_pred             H
Q 009914          384 L  384 (522)
Q Consensus       384 l  384 (522)
                      +
T Consensus       397 l  397 (398)
T TIGR00895       397 L  397 (398)
T ss_pred             c
Confidence            5

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1e-31  Score=271.08  Aligned_cols=370  Identities=15%  Similarity=0.142  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCC--------hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTD--------PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      ++.++.+...++.....+..|.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~  111 (481)
T TIGR00879        32 IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLF  111 (481)
T ss_pred             HHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHH
Confidence            334445566677778888889888888877        899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH---Hhhhc
Q 009914           82 AAATFLVAFSS---TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS---VVMAP  155 (522)
Q Consensus        82 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~---~~l~~  155 (522)
                      .++.+++.+..   +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++   .....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  191 (481)
T TIGR00879       112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN  191 (481)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99988886543   4568999999999999999999999999999999999999999999999999999998   55545


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc-----------ccccchhhh---hhHH--------
Q 009914          156 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD-----------QVSSKSFRS---DVKV--------  213 (522)
Q Consensus       156 ~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~--------  213 (522)
                      .     .+||+.|++.++..++..+..++++++|+....+++.++           ........+   ....        
T Consensus       192 ~-----~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (481)
T TIGR00879       192 T-----LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRS  266 (481)
T ss_pred             C-----ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            5     799999999777666666555566655432111111000           000000000   0000        


Q ss_pred             ---HHHHhhhhhc---chhHHHHHHHhhhccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHh
Q 009914          214 ---LIQEAKSVIK---IPSFQIIVAQGVTGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL  286 (522)
Q Consensus       214 ---~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~  286 (522)
                         .........+   .+.++......+.... ......+.|.++++.|++..+.+.......++.+++.++.+++.||+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  346 (481)
T TIGR00879       267 VQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF  346 (481)
T ss_pred             ccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               0011111111   2223333333222222 23344567888888999998889999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc-----hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHH
Q 009914          287 SARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS-----TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTS  361 (522)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (522)
                      ++|+     ..... ..+.......+..........     ... ......+.+.+.+....+....+..|.+|++.|++
T Consensus       347 ~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  419 (481)
T TIGR00879       347 GRRP-----LLLIG-AAGMAICLFVLGILGASFVTGSSKSSGNV-AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK  419 (481)
T ss_pred             cchH-----HHHHH-HHHHHHHHHHHHHHhhcccCCcccchhHH-HHHHHHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence            9884     32222 111111111111111111111     222 22222233333333222256778899999999999


Q ss_pred             HHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          362 VYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       362 ~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      +.|+.+...+++++++|.+.|.+.+. .++.
T Consensus       420 ~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~  449 (481)
T TIGR00879       420 GISIAVAANWLANFIVGFLFPTMLES-IGVG  449 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence            99999999999999999999999988 5653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=2.4e-30  Score=252.22  Aligned_cols=347  Identities=14%  Similarity=0.111  Sum_probs=255.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      +..++++.++..++........+.+.++++.++.+.+++.+.+.+++.+..+++|+++||+|||++++++.++.+++.++
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            44567888888887777777777788999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      +.+..+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+.      .|+..
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~------~~~~~  155 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP------HAEAA  155 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence            7776664   77899999999999999999999999999999999999999999999999999999875      48888


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHH
Q 009914          168 FHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSF  246 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  246 (522)
                      +.+.+...++..+....+++++++.+..+     .+..   ...++..+..+.++++|.+............ .......
T Consensus       156 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (393)
T PRK11195        156 LAVCALIYLLAALFNLFIPRLGARRPGQS-----WNPI---ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFL  227 (393)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccccccC-----CCHH---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            87776655544444444444332111100     0000   1112333445566777776554433322222 2233345


Q ss_pred             HHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          247 AAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       247 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      .|.|++ .+|.++.+.|.+....+++.++++++.+++.||.++++     .....  ..++..  ...+ ..   .++.+
T Consensus       228 ~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-----~~~~g--~~~~~~--~~~~-~~---~~~~~  294 (393)
T PRK11195        228 VLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-----VLPAG--ILMGLV--VLLM-AL---QHSLL  294 (393)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-----hHHHH--HHHHHH--HHHH-HH---HhHHH
Confidence            667776 48999999999999999999999999999999877663     22221  111111  1111 11   12333


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcch-hHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS-RTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      ......++.|++.+...+ ...+.+++..|++. +|++.|+.+...+++..++..+.+.+.
T Consensus       295 ~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        295 PAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            345566678888877776 67788888766554 799999999999999999999988664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=4.1e-31  Score=266.44  Aligned_cols=375  Identities=12%  Similarity=0.051  Sum_probs=253.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc-----CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAAL-----HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGA   78 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~   78 (522)
                      +++.+.++.++.+..+++....+...|.+..++     +.+..+.+++.+...++..++++++|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            456677888899999999999999999887652     345667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh------HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009914           79 FLWAAATFLVAFSST------FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVV  152 (522)
Q Consensus        79 ~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~  152 (522)
                      ++..++.++++++++      ++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.++..
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888765      78899999999999999999999999999999999999999999999999999998876


Q ss_pred             hhcccc------------------cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc-------------c
Q 009914          153 MAPMTF------------------MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD-------------Q  201 (522)
Q Consensus       153 l~~~~~------------------~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~  201 (522)
                      +.....                  ....+||++|.+.++..++..+..+++||+|++...++++++             .
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~  253 (502)
T TIGR00887       174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI  253 (502)
T ss_pred             HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccc
Confidence            542100                  011479999999888888777777778888876322111100             0


Q ss_pred             cccchhhh----hhHHHHHHhhhhhc----chhHHH---HH-HHhhhccchhHHHHHHHHHHHHhCCChhHHHH------
Q 009914          202 VSSKSFRS----DVKVLIQEAKSVIK----IPSFQI---IV-AQGVTGSFPWSALSFAAMWLELTGFSHEKTAF------  263 (522)
Q Consensus       202 ~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  263 (522)
                      +++....+    +.++....++++++    ++....   +. .........++...+.|.++++.|++....+.      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~  333 (502)
T TIGR00887       254 EAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEEL  333 (502)
T ss_pred             ccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHH
Confidence            00000000    00000012223322    111111   11 11111122345556788888888886542211      


Q ss_pred             ------HHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 009914          264 ------LMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLF  337 (522)
Q Consensus       264 ------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  337 (522)
                            ...+..++.+++.++.+++.||+|||+     .++... .+..+....+...... ...... .....+...++
T Consensus       334 ~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-----~l~~~~-~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~  405 (502)
T TIGR00887       334 YKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-----IQLMGF-FILTVLFFVLGFAYNH-LSTHGF-LAIYVLAQFFA  405 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-----HHHHHH-HHHHHHHHHHHHHHHh-cchhHH-HHHHHHHHHHH
Confidence                  223344566778889999999999984     332221 1111111111111100 011111 11111112222


Q ss_pred             HhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          338 ISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .....+ ..+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+.
T Consensus       406 ~~~~~~-~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       406 NFGPNA-TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             hcCCCc-hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            222333 5677889999999999999999999999999999999999885

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=2.1e-30  Score=255.68  Aligned_cols=353  Identities=17%  Similarity=0.197  Sum_probs=260.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhh-----hHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTG-----LGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAF   79 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~   79 (522)
                      .+.+..++++.++..+......+.+|.+.+++|.+..+     .|++.+++.++..++++++|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            34566777888888888888999999999999998654     4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009914           80 LWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM  159 (522)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~  159 (522)
                      +.+++.+++.+.++++.+++.|++.|++.+ ..+...+++.+++|+++|++++++......+|.+++|.+++.+.+.   
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---  168 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---  168 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999899999999999999999855 5677788999999999999999999999999999999999999887   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHH-HHHhhhcc
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGVTGS  238 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  238 (522)
                        .+||+.|++.+++.++..+..+++.++++.+.+++       +.      . ..++..+.++++.++.. ....+...
T Consensus       169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (408)
T PRK09874        169 --YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-------EM------L-HMREVVTSLKNPKLVLSLFVTTLIIQ  232 (408)
T ss_pred             --hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-------hh------h-HHHHHHHhCcCCchHHHHHHHHHHHH
Confidence              79999999999887777766666554432211110       00      0 01112233455554432 22222222


Q ss_pred             c-hhHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          239 F-PWSALSFAAMWLELTGFSHE----KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       239 ~-~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      . ......+.+.|..+.+.+..    ..+.+..+.+++.+++.+..|++.||+++|+     .+..... ....  ..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----~~~~~~~-~~~~--~~~~  304 (408)
T PRK09874        233 VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----ILITALI-FSVL--LLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hHHHHHH-HHHH--HHHH
Confidence            2 22334567777765433322    2455566677888888999999999999884     3222211 1111  1111


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                       ....   +..+...+..++.|++.+...+ ...+.+.+..|++.+|+.+++.+....++..++|.+.|.+.+. .||
T Consensus       305 -~~~~---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~  376 (408)
T PRK09874        305 -MSFV---QTPLQLGILRFLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGF  376 (408)
T ss_pred             -HHHh---ccHHHHHHHHHHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cch
Confidence             1111   2233355566777888887777 6778888889999999999999999999999999999999988 565

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=4.1e-30  Score=252.04  Aligned_cols=354  Identities=14%  Similarity=0.131  Sum_probs=266.3

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +.++.+....+..++..+......+.+|.+.+++|.|+.+.+++.+++.++..++++++|+++||+|||+++.++..+..
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~   84 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI   84 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            34566666677777777777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ++.+++.+.++++.+++.|++.|++.+...+....+..|.++++++++++++...+..+|..++|.+++.+.+.     .
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~  159 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-----F  159 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence            99999999999999999999999999988888889999999999999999999999999999999999999877     7


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hh
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PW  241 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (522)
                      +||+.|++.++..++..++..+..++++..+++        +       .+..+..+..+++|.++..+...+.... ..
T Consensus       160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (394)
T PRK11652        160 GWRACYLFLLLLGAGVTFSMARWMPETRPADAR--------R-------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIA  224 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCccccc--------h-------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            999999998887776655544433332111100        0       1123445556777776654443332222 22


Q ss_pred             HHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          242 SALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       242 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      ....+.+.++++ +|++..+.+++.....++.+++..+.+++.||++++      ..............  ........ 
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~-  295 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL------MWQSVICCLLAGLL--MWIPGWFG-  295 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--HHHHHHhc-
Confidence            233456677765 899999999998888888888999999999988743      22221111111111  11111111 


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ....+......++.+++.+...+ ...+...+..| +++++..++.+....+++.+++.+.|.+.+.
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        296 VMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            12233345566777888887777 77888888887 5789999999999999999999988877554

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=1.5e-30  Score=253.83  Aligned_cols=351  Identities=11%  Similarity=0.104  Sum_probs=258.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++.+..+.+..++.........+.+| ++.+++|+|..++|++.+++.++..+++++.|+++||+|||+++.++.++.++
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~   85 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS   85 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence            44566666777777777777666655 56678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.++++++++++.++++|++.|.+.+...+...++..|..|+++|++++++.....++|.++||++++++..      .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~------~g  159 (395)
T PRK10054         86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM------QS  159 (395)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc
Confidence            999999999999999999999988888888899999999999999999999999999999999999998874      58


Q ss_pred             chHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchh-
Q 009914          164 WRISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW-  241 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  241 (522)
                      |+.+|++.+++.++..++..+ ++++++.++ ++   +    +       +. .+.++.+++|.++......++....+ 
T Consensus       160 ~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~---~----~-------~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        160 INLPFWLAAICSAFPLVFIQIWVQRSEKAIA-TE---T----G-------SV-WSPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhccccccc-cc---h----h-------hh-hhhhhhccCceehHHHHHHHHHHHHHH
Confidence            999999988877776555544 333322111 00   0    0       00 11245677777766554444433322 


Q ss_pred             HHHHHHHHHHH---HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          242 SALSFAAMWLE---LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       242 ~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                      ....+.+.|+.   +.+.+....+.+.....+..+......+++.||.++|+     .+.... .+...  ....+ ...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~l~~~~-~~~~~--~~~~~-~~~  294 (395)
T PRK10054        224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-----LMTAGT-LCFVI--GLVGF-IFS  294 (395)
T ss_pred             HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-----HHHHHH-HHHHH--HHHHH-HHc
Confidence            23345565553   34566677788888887777777888899999988773     222111 11111  11111 111


Q ss_pred             CCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          319 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                        .++.+...+...+.+++.+...| ...+.+.+..|++.++++.+..+ ...+|..+||.++|.+.|+ .|+
T Consensus       295 --~~~~~~~~~~~~~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-~g~  362 (395)
T PRK10054        295 --GNSLLLWGMSAAVFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-LPP  362 (395)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-cCh
Confidence              12333344566777888777667 67788999999999999998765 6678999999999999999 564

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.3e-29  Score=248.33  Aligned_cols=347  Identities=16%  Similarity=0.102  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      .+....+..+..........+.+|.+.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence            34445555566666666777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchH
Q 009914           87 LVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRI  166 (522)
Q Consensus        87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~  166 (522)
                      ++.++++++.+++.|+++|++.+...+...+++.|++|+++|++.+++.+....+|..++|.+++.+.+.     .+|++
T Consensus        84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----~g~~~  158 (392)
T PRK10473         84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----FPWQS  158 (392)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cChHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988776     79999


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc-cchhHHHH
Q 009914          167 SFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG-SFPWSALS  245 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  245 (522)
                      .|++.+++.++..++..+..++++..+++   ++    .       ...+..++.++++.++......... ........
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (392)
T PRK10473        159 LFYTMAAMGILVLLLSLFILKETRPARAP---AA----S-------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVN  224 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccC---Cc----c-------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888877776665544433211110   00    0       0112223445666655433332222 22233445


Q ss_pred             HHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          246 FAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       246 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      +.|.+++ ++|++..+.+.+.+..+++.+++.++.+++.||+++|+     ....... +....  ...+... . ... 
T Consensus       225 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-----~~~~~~~-~~~~~--~~~~~~~-~-~~~-  293 (392)
T PRK10473        225 TSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-----LMLTSQV-LFLAA--GITLALS-P-SHA-  293 (392)
T ss_pred             hCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHH-HHHHH--HHHHHHH-H-HHH-
Confidence            5677765 68999999999999999999999999999999999883     3222211 11111  1111111 1 111 


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                       .......+.+.+.+...+   .....+..|.++++   |..+....++..+++.+.+++.+. .|+
T Consensus       294 -~~~~~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~-~g~  352 (392)
T PRK10473        294 -VSLFGITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAV-LGI  352 (392)
T ss_pred             -HHHHHHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence             122333333333333333   23334455544443   444455567778888888888887 564

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=9.6e-30  Score=250.68  Aligned_cols=357  Identities=13%  Similarity=0.101  Sum_probs=259.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ....+..+.+.+++.++......+..|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            34556778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-c-
Q 009914           84 ATFLV---AFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-F-  158 (522)
Q Consensus        84 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~-  158 (522)
                      +.+++   .++++++.++++|+++|++.+...+..++++.++.++++|.+.+++.+....+|..+|+.+++.+.... . 
T Consensus       104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~  183 (438)
T PRK10133        104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            99875   467899999999999999999999999999999877777777899999999999999999987654110 0 


Q ss_pred             -----------cC--------CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhh
Q 009914          159 -----------MG--------IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAK  219 (522)
Q Consensus       159 -----------~~--------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (522)
                                 ..        ..+||++|+....+..+..++..+ .+.|+.+.++.+   +++.       .+..+..+
T Consensus       184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~-~~~p~~~~~~~~---~~~~-------~~~~~~~~  252 (438)
T PRK10133        184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML-TKFPALQSDNHS---DAKQ-------GSFSASLS  252 (438)
T ss_pred             cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccccc---cccc-------cchhhhHH
Confidence                       00        025677776544333322222222 111211111100   0000       11223345


Q ss_pred             hhhcchhHHHHHHHhhhccc-hhHHHHHHHHHH-H-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhH
Q 009914          220 SVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWL-E-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRI  296 (522)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  296 (522)
                      +++++|.++...+..++... .+....|.+.|+ + .+|+++.++++......++.++++++.+++.||+++|+     .
T Consensus       253 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-----~  327 (438)
T PRK10133        253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-----V  327 (438)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----H
Confidence            66778876655443333333 344556788775 4 47999999999999999999999999999999999884     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhch
Q 009914          297 ILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF  376 (522)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  376 (522)
                      +.......  .....+. ...+   .. . ....+.+.|++.+...| ..++...+..|+ +.+++.++.. +..+++.+
T Consensus       328 l~~~~~~~--~~~~~~~-~~~~---~~-~-~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~  396 (438)
T PRK10133        328 LAAYALIA--MALCLIS-AFAG---GH-V-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGI  396 (438)
T ss_pred             HHHHHHHH--HHHHHHH-HHcC---Ch-H-HHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccchhHHh-HHhccchH
Confidence            32221111  1111111 1111   11 1 24566778999999999 888888888774 4677888876 45578899


Q ss_pred             hhHHHHHHHHH
Q 009914          377 APPVVGILAQH  387 (522)
Q Consensus       377 ~~~~~g~l~~~  387 (522)
                      +|++.|.+.|.
T Consensus       397 ~~~i~G~l~~~  407 (438)
T PRK10133        397 VTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHh
Confidence            99999999987

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=8.2e-30  Score=248.61  Aligned_cols=343  Identities=14%  Similarity=0.143  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHH-HHHHHHHHHHHHHH
Q 009914           12 NLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIA-LGAFLWAAATFLVA   89 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~-~~~~~~~~~~~~~~   89 (522)
                      .+.+++..+......+.+|. +.+++|.|+.++|++.+++.+...+.+++.|+++||+||||.++ .+..+.+++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            34567777777888888886 56789999999999999999999999999999999999988755 45666667778888


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHH--HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           90 FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVA--FGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      ++++++.+++.|++.|.+.+...|...+++.|+.|+++|++.  .+....+.++|.++|+.+++.+.+.     .+||+.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~  157 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----FGFTVM  157 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----cccHHH
Confidence            999999999999999988888888888999998887777654  6888888999999999999999887     899999


Q ss_pred             HHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHH
Q 009914          168 FHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALS  245 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  245 (522)
                      |++.+++.++..++.++ +++.|+..+++.    .  +       .    +.+..++++.++......+.... ......
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPGAL----T--R-------L----EVRGLLASRDTRLLFVACTLMWGCNILYII  220 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCccccc----C--c-------c----hhhhhhcCcchHHHHHHHHHHHHHHHHHHh
Confidence            99999887777766655 444332211100    0  0       0    11123445555444333322222 223345


Q ss_pred             HHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          246 FAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       246 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      +.|.|++ ++|.++.+.+.+.....+..+++.++.|++.||+++|+     ......  ....... .... .   .++.
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~--~~~~~~~-~~~~-~---~~~~  288 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----LMLLAA--LAGVAFY-TGLA-A---DNSL  288 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----HHHHHH--HHHHHHH-HHHH-H---HHHH
Confidence            6788875 68999999998888877778888899999999999884     322211  1111111 1111 1   1223


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +.......+.|++.+...+ ....+..|..|+ +++++.|+.+...+++..++|.+.|.+.+. .||
T Consensus       289 ~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~  352 (375)
T TIGR00899       289 WALLMLQLLNAIFIGILAG-IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-WSY  352 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence            3344455666777666666 667788888875 567999999999999999999999999998 565

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=3.5e-29  Score=243.80  Aligned_cols=345  Identities=14%  Similarity=0.023  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHH----HHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVI----ALGAFLWAAA   84 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l----~~~~~~~~~~   84 (522)
                      ..+.+.++..+....+..|.+|.+.+++|.|.+++|++.+++.+...++++++|+++||+||+...    ..+..+..+ 
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            446677888888888899999999999999999999999999999999999999999999985433    222222222 


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           85 TFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                       ..+..+++++.+++.|+++|.+.+...|...++..++  +++|++.++......++|.+++|++++.+.+.     .||
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-----~g~  157 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-----FDE  157 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-----cCh
Confidence             2344678899999999999999888899988887664  46789999999999999999999999999988     899


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHH
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSA  243 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  243 (522)
                      |..|++.++..+ ..++...+++++++.++++  ++   +.       ...+..++.+|+|.++.+....++... ....
T Consensus       158 ~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~---~~-------~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~  224 (382)
T TIGR00902       158 QNILAILTAGLA-FMLIGFLIKPTIPPKDAIP--ED---ES-------QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY  224 (382)
T ss_pred             hHHHHHHHHHHH-HHHHHHHcCCCCCCCcccc--cc---cc-------ccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            999988766533 3333333443322111110  00   00       011234466788888777665555444 3456


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          244 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      .++.|.|+++.|.++.+.|.+.....++.+++..+.+++.||++.|+     .+... .....+.     +..... .++
T Consensus       225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-----~l~~~-~~~~~~~-----~~~~~~-~~~  292 (382)
T TIGR00902       225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-----LLLIS-AIACVGR-----WAIIGA-IEA  292 (382)
T ss_pred             HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-----HHHHH-HHHHHHH-----HHHHHh-Hhh
Confidence            67889999999999999999999999999999999999999999883     22211 1111111     111111 244


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHH-HHHHHhchhhHHHHHHHHHhhC
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRS-FESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      .+.+.....+.|+..+...+ ....++.+. |++++++.+++++. ...++..++|.++|++.|. .|
T Consensus       293 ~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g  357 (382)
T TIGR00902       293 FPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            45566778899999998888 778888888 98999999999874 5668999999999999998 45

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.98  E-value=2.4e-29  Score=243.04  Aligned_cols=326  Identities=24%  Similarity=0.393  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   89 (522)
                      .+.+..+...+......+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            45667788888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHH
Q 009914           90 FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFH  169 (522)
Q Consensus        90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~  169 (522)
                      +.++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.....++|..+++.+++.+.+.     .+||+.|+
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~  157 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGWRWLFL  157 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999887     78999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHh-hhccchhHHHHHHH
Q 009914          170 IVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG-VTGSFPWSALSFAA  248 (522)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  248 (522)
                      +.+++.++..+...+.+                                      |.++...... +..........+.|
T Consensus       158 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  199 (352)
T cd06174         158 ILAILGLLLALLLLFLL--------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP  199 (352)
T ss_pred             HHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99888887776665543                                      1222333322 22333445566788


Q ss_pred             HHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 009914          249 MWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMH  327 (522)
Q Consensus       249 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (522)
                      .+.++ .|.+..+.+.......++.+++.++.+++.||+++|+.    .+... .......  ......    .++.+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~-~~~~~i~--~~~~~~----~~~~~~~  268 (352)
T cd06174         200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----LLLIG-LLLAALG--LLLLAL----APSLALL  268 (352)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHH-HHHHHHH--HHHHHH----hccHHHH
Confidence            88876 49999999999999999999999999999999998831    12111 1111111  111111    1224456


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          328 GLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ....++.|++.+...+ ...+++.|..|+++|++.+|+.+...+++..++|.+.|.+.+. .++
T Consensus       269 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~  330 (352)
T cd06174         269 LVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGY  330 (352)
T ss_pred             HHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCc
Confidence            6788888999998888 8999999999999999999999999999999999999999986 565

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.98  E-value=1.4e-29  Score=250.34  Aligned_cols=357  Identities=18%  Similarity=0.199  Sum_probs=278.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      |.+.+..++++.++..++..+....++.+..++.-|+..++++..+..+...+.++++|.++||++||++++.+.++.++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~   87 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRAL   87 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            44667788999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             HHHHHHhh-----hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009914           84 ATFLVAFS-----STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        84 ~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~  158 (522)
                      ..++.++.     .+.+.+++..++.|++.++..|+.++++.+..|+++...++++.+...++..++||.++|.+...  
T Consensus        88 ~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~--  165 (524)
T PF05977_consen   88 VALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF--  165 (524)
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH--
Confidence            65554432     37888999999999999999999999999999999999999999999999999999999999887  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS  238 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (522)
                         .|-.++|.+.++..++........+++++.  ++.      +++...   ++.....+.+.++|.+...+...+...
T Consensus       166 ---~G~~~~f~inalsfl~~i~~l~~~~~~~~~--~~~------~~e~~~---~~l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  166 ---FGAAAAFLINALSFLISILALLRWKPPPPP--SSL------PRERFF---SALREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHccccccc--ccc------chhhhh---hhHHHHHHHHhcchHHHHHHHHHHHHH
Confidence               788999999888766655444443322111  100      111122   334445555666776665544333333


Q ss_pred             c-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009914          239 F-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  316 (522)
Q Consensus       239 ~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (522)
                      . .......+|.+.+ .+|.++...|++.+..+++.++|.++.+++.+|+++++     ++... ..+.+.     .+..
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-----lv~~~-~~~~a~-----~~~~  300 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-----LVLLA-SLLFAL-----ALLL  300 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-----hhHHH-HHHHHH-----HHHH
Confidence            3 2344456888886 58999999999999999999999999999988877663     22211 111111     1111


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          317 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ... ..+.+...+.+++.|++...... ...+.+++..|++.||+++|+++++...+..+|..+.|.+.+. .|
T Consensus       301 lal-~~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g  371 (524)
T PF05977_consen  301 LAL-SPSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FG  371 (524)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence            122 23445566778888988888777 7889999999999999999999999999999999999999998 45

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.98  E-value=6.1e-29  Score=242.80  Aligned_cols=352  Identities=13%  Similarity=0.104  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      ..+..++..++..++..+...+++|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.
T Consensus         3 ~~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         3 IPFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34667788888899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHh---hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc---
Q 009914           86 FLVAF---SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM---  159 (522)
Q Consensus        86 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~---  159 (522)
                      +++..   .++++.+++.|++.|+|.+...+...+++.+..|+++|++.+++.+...++|..+|+.+++.+......   
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88654   358999999999999999999999999999999999999999999999999999999999888532100   


Q ss_pred             ------------------CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhh
Q 009914          160 ------------------GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSV  221 (522)
Q Consensus       160 ------------------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (522)
                                        +..+||++|++.+++.++..++..+. +.|+.++.++  +  +  .       ...+..+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~~--~--~--~-------~~~~~~~~~  228 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSDA--K--Q--I-------SFSASLSRL  228 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcccc--c--c--c-------cchhhHHHH
Confidence                              11369999999988777665554332 2232111100  0  0  0       001123345


Q ss_pred             hcchhHHHHHHHhhhccch-hHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHH
Q 009914          222 IKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELT--GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  298 (522)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  298 (522)
                      +++|.++..+...+++... ....++++.|.++.  +.+....+...+.......+|+++++++.||+++|+     .+.
T Consensus       229 ~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-----~l~  303 (410)
T TIGR00885       229 ARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-----VLM  303 (410)
T ss_pred             HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHH
Confidence            6777777765555555443 35567888888754  445555566666667888899999999999998883     322


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhh
Q 009914          299 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  378 (522)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~  378 (522)
                      .. ..+..+. ..+...    .++.  .....+.+.|++.+..+| ..++...+..+++.+....++....  +|+++.|
T Consensus       304 i~-~~~~~~~-~ll~~~----~~~~--~~~~~l~~~glf~s~~fp-~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p  372 (410)
T TIGR00885       304 AY-AIIGMAL-CLGSIF----AGGH--VGLYCLTLCSAFMSLMFP-TIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVP  372 (410)
T ss_pred             HH-HHHHHHH-HHHHHH----cCCh--HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhHHHHHHHH--hccchHH
Confidence            22 1121111 111111    1121  134667777888887777 8899999999877654455555543  9999999


Q ss_pred             HHHHHHHHH
Q 009914          379 PVVGILAQH  387 (522)
Q Consensus       379 ~~~g~l~~~  387 (522)
                      ++.|++.|.
T Consensus       373 ~l~G~~~d~  381 (410)
T TIGR00885       373 PLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHH
Confidence            999999996

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.98  E-value=8.1e-29  Score=247.59  Aligned_cols=358  Identities=14%  Similarity=0.144  Sum_probs=254.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-----chhHH-HHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-----NRAHV-IALGA   78 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----grr~~-l~~~~   78 (522)
                      ++....+.+..+..+.........+|.+.++.|.+..++|.+ +.....+ ++.+++|+++||+     |||+. ++.+.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~   88 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQ   88 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHH
Confidence            344556677777888888899999999999999999999997 4444444 5899999999999     98885 77888


Q ss_pred             HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914           79 FLWAAATFLVAFS---STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus        79 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      +..+++...+++.   .+++.+.+.+++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+
T Consensus        89 i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010         89 LLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8787887777765   4688899999999999999999999999999999999999999999999999999999999987


Q ss_pred             -ccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHh
Q 009914          156 -MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG  234 (522)
Q Consensus       156 -~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (522)
                       .     .|||.+|++.+++.++..+..++. ++|+...++   ++ ..+       +...+..++.++++..+......
T Consensus       169 ~~-----~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~---~~-~~~-------~~~~~~l~~~~~~~~~~~~ll~~  231 (491)
T PRK11010        169 RY-----LGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPV---PK-TLE-------QAVVAPLRDFFGRNNAWLILLLI  231 (491)
T ss_pred             cc-----cCHHHHHHHHHHHHHHHHHHHHhc-CCCcccccc---cc-chh-------hhHHHHHHHHHcCcCHHHHHHHH
Confidence             4     699999999998877776655554 333221110   00 000       11122344455555554443333


Q ss_pred             hhccc-hhHHHHHHHHHH-HHhCCChhHHHHHHH-HHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          235 VTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMA-LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       235 ~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      +.... ......+.+.|+ +++|++..+.+.+.. ...++.+++.++.|+++||+++|+     .+.... .+..+....
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----~l~i~~-~l~~l~~l~  305 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----ALMIFG-ILQGVSNAG  305 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHH-HHHHHHHHH
Confidence            33322 234455667776 469999999999875 556799999999999999999873     322211 111111111


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .......  .++.+.+....++..+..+...+ ...++..+..+++.+++.+|+.+....++..+++++.|++.|. .||
T Consensus       306 ~~~l~~~--~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~  381 (491)
T PRK11010        306 YWLLSIT--DKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGW  381 (491)
T ss_pred             HHHHHhc--cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCh
Confidence            1111111  12222233334443333333334 5678888999999999999999999999999999999999998 576

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.98  E-value=4e-29  Score=243.83  Aligned_cols=333  Identities=13%  Similarity=0.089  Sum_probs=239.9

Q ss_pred             HhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009914           21 DESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAIS  100 (522)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (522)
                      ...+..+.+|.+.+++|.|+.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.++++.+++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHH
Q 009914          101 RALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT  180 (522)
Q Consensus       101 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~  180 (522)
                      |++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.     .+||+.|++.+++.++..+
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----FSWHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887     8999999998888777766


Q ss_pred             hhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHH-HhCCCh
Q 009914          181 LVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLE-LTGFSH  258 (522)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~  258 (522)
                      +..+..++++..++++     +.      +.++..+..++.++++.++........... .+....+.|.++. .+|+++
T Consensus       161 ~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  229 (377)
T PRK11102        161 LVFFFIPETLPKERRQ-----PF------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSP  229 (377)
T ss_pred             HHHHhCCccCcccccC-----CC------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCH
Confidence            6555433322111100     00      012223445566777776655443333222 2334455566664 589999


Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Q 009914          259 EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI  338 (522)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  338 (522)
                      .+.+.+.....++.+++.++.+++.||+++|+     .............+..... ...  +...+...+...+.+.+.
T Consensus       230 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~  301 (377)
T PRK11102        230 QNFGYYFALNIVFLFVMTIINSRFVRRVGALN-----MLRFGLWIQFIMGIWLVVS-ALL--DLGFWALVVGVAAFVGCV  301 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHH-HHH--hhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999884     3332222111111111111 111  111222223333333333


Q ss_pred             hccCCCcchhhhhhhcCcchhHHHHHHHHHHHH-HHhchhhH
Q 009914          339 SWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES-ILSSFAPP  379 (522)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~i~~~  379 (522)
                      +.... .....+.|..| +.++++.++.+.... ++..+++.
T Consensus       302 ~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~  341 (377)
T PRK11102        302 SMISS-NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL  341 (377)
T ss_pred             HHhhH-HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            33333 34566677766 789999998876654 33344443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.98  E-value=2e-29  Score=245.05  Aligned_cols=352  Identities=14%  Similarity=0.096  Sum_probs=246.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      ++..+++++..........+..|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            445777778888888889999995 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-----ccC
Q 009914           87 LVAFSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-----FMG  160 (522)
Q Consensus        87 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-----~~~  160 (522)
                      ++++++ +++.+++.|+++|++.+. .+...+++.+++|+++|++++++.....++|..+++.+++.+....     ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999 999999999999998654 5667899999999999999999999888888888887777665420     001


Q ss_pred             CCCchHHH-HHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc
Q 009914          161 IPGWRISF-HIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS  238 (522)
Q Consensus       161 ~~gw~~~f-~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (522)
                      ..+||+.| ++.+++.++..++.+. .+++|+..+++++.+......   ...++..+..++.+++|.++......+...
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARW---SVGTGALGDQLKVFRDRHTWILALLYSVTF  238 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccc---cccchhHHHHHHHHhccchhhHHHHHHHHH
Confidence            24899999 4445555444444444 344443221111100000000   000111223445566777666555444433


Q ss_pred             c-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 009914          239 F-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  316 (522)
Q Consensus       239 ~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (522)
                      . .+....+.|.|++ .+|+++.+++.+.....+..++++++.|++.||+++|+     .......... .  ....+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~~~~~-~--~~~~~~~  310 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-----KLLMSFLGVA-M--GAFLVVL  310 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-----hHHHHHHHHH-H--HHHHHHh
Confidence            3 3455678898986 47999999999999999999999999999999999874     2222211111 1  1111111


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHH
Q 009914          317 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESIL  373 (522)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  373 (522)
                      ................+.+++.+.... ..++...+..| +++|+++|+.+.+.++|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       311 GLVSPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cCCCcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            111111333344445555556665555 66777888887 68999999999887765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=7.4e-31  Score=254.90  Aligned_cols=346  Identities=19%  Similarity=0.216  Sum_probs=258.0

Q ss_pred             HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhh
Q 009914           34 AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSS--TFAQVAISRALNGIGLALV  111 (522)
Q Consensus        34 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~  111 (522)
                      .++++|..+.|++.+.+..|+.+++++.|++.||+|.|+++..+.++.++++++..++.  +++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46889999999999999999999999999999999999999999999999999999875  4567899999999999999


Q ss_pred             HHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCC-CC
Q 009914          112 APAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAND-PH  190 (522)
Q Consensus       112 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~-~~  190 (522)
                      +|+...+..+|.|++||++..++...+..+|.+++.+++|++.+..    .||+.+|++.++++++..++.+++..| |.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----~GW~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----LGWPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----CCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999999999998753    799999999999999999888776654 43


Q ss_pred             CCCCCCCCCcccccchhh--hhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHH
Q 009914          191 FPDGGTANSDQVSSKSFR--SDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMA  266 (522)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~  266 (522)
                      ..+.-.++|.+.-.+...  ...+...-.++++++++.+|.+.+..+.... .+....+.|.|+++ +|++..+.|++.+
T Consensus       222 ~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sa  301 (466)
T KOG2532|consen  222 KHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSA  301 (466)
T ss_pred             cCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHH
Confidence            322211111100000000  0000012356788999999988877777666 46777899999975 9999999999999


Q ss_pred             HHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcc
Q 009914          267 LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATN  346 (522)
Q Consensus       267 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  346 (522)
                      +..+...+..+++|.++||+.+|...........-.+........+..+.+....+.+  ..+.++.++.+......+..
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~--~a~~~l~~~~~~~g~~~~Gf  379 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRL--LAVILLTIAIGLSGFNISGF  379 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcch--HHHHHHHHHHHHcccchhhh
Confidence            9999999999999999999987522222222222222332222222222222222221  22333333333333333123


Q ss_pred             hhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          347 NPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      +.-..+.. +++.+..+|+.+.+..+.+.++|.+.|.+..
T Consensus       380 ~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  380 YKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             Hhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            33333434 5889999999999999999999999999884

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=6.1e-28  Score=235.99  Aligned_cols=349  Identities=11%  Similarity=0.124  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHH-HHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVI-ALGAFLWAA   83 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l-~~~~~~~~~   83 (522)
                      .....+.+..++..+......+.+|. +.+++|.|++++|++.+...+...+.+++.|.++||+||||.+ ..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~   94 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVL   94 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            34455666788888887777777665 5788999999999998776665454555555559999998874 556666667


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNR--GVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      +..+.+++++++.+++.+.+.+...+...|...+++.++.++++|  +...++.+.+.++|.++||++++.+.+.     
T Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-----  169 (393)
T PRK15011         95 ACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-----  169 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----
Confidence            777888889998887666555555567788888888888776655  3456889999999999999999999887     


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh-HHHHHHHhhhccch
Q 009914          162 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS-FQIIVAQGVTGSFP  240 (522)
Q Consensus       162 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  240 (522)
                      .|||..|++.++..++..++.++..++++.++++.+  ++  .       +.    .++  +++. ++.+..........
T Consensus       170 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-------~~----~~~--~~~~~~~~~~~~~~~~~~~  232 (393)
T PRK15011        170 FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT--GT--L-------EA----PRR--NRRDTLLLFVICTLMWGTN  232 (393)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc--cc--c-------cc----ccc--ccccHHHHHHHHHHHHHHH
Confidence            899999999988887777666554433321111110  00  0       00    000  1111 22222222222222


Q ss_pred             hHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 009914          241 WSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       241 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (522)
                      +....+.|.|++ ++|++..+.+.+.....++.+++.++.|+++||+++|+     ......  ...... .... ... 
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-----~~~~~~--~~~~~~-~~~~-~~~-  302 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-----LMRVAA--VAGVCF-YAGM-LMA-  302 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHH--HHHHHH-HHHH-HHH-
Confidence            334457888886 58999999998888877888889999999999999883     322211  111111 1111 111 


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          320 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                        ++.+......++.++..+...+ ....+..|..|+ +++++.++.+...++|..++|.+.|.+.|. .||
T Consensus       303 --~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~  369 (393)
T PRK15011        303 --HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNY  369 (393)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Confidence              1222233344444444444444 445677888885 599999999999999999999999999997 565

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=1.3e-28  Score=237.80  Aligned_cols=335  Identities=18%  Similarity=0.180  Sum_probs=244.7

Q ss_pred             hhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009914           22 ESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISR  101 (522)
Q Consensus        22 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  101 (522)
                      ....++.+|.+.+++|.|+++.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+.+ ..++++.+++.|
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~   94 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT   94 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999998888888777 778899999999


Q ss_pred             HHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHh
Q 009914          102 ALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTL  181 (522)
Q Consensus       102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~  181 (522)
                      ++.|++.+...+....++.++++ ++|++++++.+....+|..+++.+++.+.+..   ..+||+.|.+.++..++... 
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---~~~w~~~f~~~~~~~~~~~~-  169 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS---GGHWQQALAWWALPALLALL-  169 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHH-
Confidence            99999999988888889999886 67999999999999999999999998887641   02499999887765444332 


Q ss_pred             hhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc-chhHHHHHHHHHHHHhCCChhH
Q 009914          182 VRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS-FPWSALSFAAMWLELTGFSHEK  260 (522)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~  260 (522)
                       .+.++.+++++++++    ...           ...++.+|+|.++.......... ..+....++|.|+++.|++..+
T Consensus       170 -~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~  233 (355)
T TIGR00896       170 -AWIPQVRRRVAANQT----TTR-----------LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAAT  233 (355)
T ss_pred             -HHhhhhccccCCCCC----CCC-----------CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence             223322211111000    000           11233456666665544333333 3455667899999889999999


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhc
Q 009914          261 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISW  340 (522)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  340 (522)
                      .+.+.+...++.++++++.|++.||+++|+    +..... ..+.....  +.+...   ..... . ....+.|++.+.
T Consensus       234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~-~~~~~~~~--~~~~~~---~~~~~-~-~~~~l~g~~~g~  301 (355)
T TIGR00896       234 AGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVL-AVLQLVGL--CGLLFA---PMHGL-W-AWALVLGLGQGG  301 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHH-HHHHHHHH--HHHHHh---hhhHH-H-HHHHHHHHhhhh
Confidence            999999999999999999999999996553    122211 11111111  111111   11111 1 234567888877


Q ss_pred             cCCCcchhhhhhhc-CcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          341 NAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       341 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ..+ ...+.+.+.. +++.++...++.+.+.+++..++|.+.|++.|+..+|
T Consensus       302 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       302 AFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             HhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            777 5556555444 4567789999999999999999999999999995444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=2.1e-27  Score=233.12  Aligned_cols=349  Identities=17%  Similarity=0.149  Sum_probs=239.7

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-----chhH-HHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-----NRAH-VIALGAFLWAAA   84 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----grr~-~l~~~~~~~~~~   84 (522)
                      +...++.+++........+|.+.++.|.|.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            455677788888889999999999999999999999777665  58899999999999     7765 688888888888


Q ss_pred             HHHHHhh---hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           85 TFLVAFS---STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        85 ~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      ..++++.   .+++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.+++.+.+..    
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~----  157 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV----  157 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc----
Confidence            8887776   357778888888888899999999999999999999999999999999999999999999888741    


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccch-
Q 009914          162 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP-  240 (522)
Q Consensus       162 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (522)
                      .|||..|++.+++.++..+...+. ++|+..++++  +  +    ..   ++..+..++++++|.++.++...+..... 
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~~~~~-~e~~~~~~~~--~--~----~~---~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~  225 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALTTLWA-PEPEVPARPP--R--S----LG---EAVVGPLRDFFSRRGAWALLLLIVLYKLGD  225 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccc--c--h----hH---HHHHHHHHHHHhCcCHHHHHHHHHHHHhHH
Confidence            499999999988777665544334 3332211110  0  0    00   12334556678888877655544333322 


Q ss_pred             hHHHHHHHHHH-HHhCCChhHHHHHHHHHH-HHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          241 WSALSFAAMWL-ELTGFSHEKTAFLMALFV-IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       241 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                      .....+.+.++ +++|+++.+.+++....+ ++.+++.++.+++.||+++|+     ....... ...+...........
T Consensus       226 ~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-----~l~~~~~-~~~l~~l~~~~~~~~  299 (402)
T PRK11902        226 AFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-----SLMLFGV-LQAVSNLGYWVLAVT  299 (402)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHH-HHHHHHHHHHHHHhc
Confidence            22223434444 568999999999886655 468899999999999999873     3222111 111111111111111


Q ss_pred             CCCchhHHHHHHH----HHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          319 DDPSTPVMHGLVL----VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       319 ~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                        +++.+.+....    +..|++.+.... ....++.+..|    ++..++.+....++..++++++|.+.|. .||
T Consensus       300 --~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~-~G~  368 (402)
T PRK11902        300 --PKHLWTMALAIGIENLCGGMGTAAFVA-LLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEA-YGW  368 (402)
T ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCh
Confidence              12223233333    234444444444 44555555555    4445666666677777777899999999 676

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=1.5e-28  Score=241.44  Aligned_cols=351  Identities=15%  Similarity=0.203  Sum_probs=245.2

Q ss_pred             HHHHHHhhhhhhHHHHHHHhcC--CChhhhHHHHHH-----HHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 009914           16 IMERADESLLPGVYKEVGAALH--TDPTGLGSLTLF-----RSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~s~-----~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   88 (522)
                      +.+.+++..+++..+.+.+++.  .++++.+.+.+.     ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888764  445666665543     333445688999999999999999999999999999999


Q ss_pred             HhhhhHH--------HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc---
Q 009914           89 AFSSTFA--------QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT---  157 (522)
Q Consensus        89 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~---  157 (522)
                      +++++++        .+++.|+++|++.+...+...+++.|++++++|++..++...+..+|.++++.++..+....   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9998875        47889999999999999999999999999999999999999999999999998887664210   


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh--HHHHHHHhh
Q 009914          158 FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS--FQIIVAQGV  235 (522)
Q Consensus       158 ~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  235 (522)
                      .....+||++|++.+++.++...+....+++++.+.++++.+   +.   ..+.++       .++++.  ++......+
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~-------~~~~~~~~~~~~~~~~~  229 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK---KK---RGPIRE-------TLTKHRKPFLLGLGLVI  229 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc---cc---cCCHHH-------HHHhchHHHHHHHHHHH
Confidence            011269999999887776665544444444432221111100   00   011121       222222  333333333


Q ss_pred             hcc-chhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          236 TGS-FPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       236 ~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      ... ..+....+.|.|++ ++|.+..+.+.......++.+++.++.+++.||+++|+     ..................
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~~~  304 (394)
T TIGR00883       230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLIIFTVLAALLAVPLLM  304 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHHHHHHH
Confidence            322 23455678899985 68999999999999999999999999999999999883     222221111111111111


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHH-HHHHHHhchhhHHHHHHHHHh
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR-SFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~  388 (522)
                        .... ..+.+......++.+++.+...+ ...+++.|.+|++.|+++.|+.. ....++..++|.+.|++.++.
T Consensus       305 --~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       305 --ALLD-SGSFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             --HHhc-CCchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence              1111 12333344556677777777777 78899999999999999999854 445678889999999999983

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=1.2e-27  Score=233.18  Aligned_cols=342  Identities=14%  Similarity=0.060  Sum_probs=244.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchh----HHHHHHHHHHHHHHHH
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRA----HVIALGAFLWAAATFL   87 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr----~~l~~~~~~~~~~~~~   87 (522)
                      ...++..........+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.+...+.  ....
T Consensus        10 ~~~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~   87 (382)
T PRK11128         10 ALSYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF   87 (382)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence            334555666678889999999999999999999999999999999999999999999984    3333222222  2233


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      ....++++.+++.|++.|++.+...|...+++.++  +++|++.++......++|.++||++++++.+.     .|||..
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-----~g~~~~  160 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-----FGEQAI  160 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-----cChhHH
Confidence            34457899999999999999999999888888876  35678889999999999999999999999988     899999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHH
Q 009914          168 FHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSF  246 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  246 (522)
                      |++.++..++..+...+. +++++..++   ++.  .       ++..+..++.+|+|.++......+.... .....++
T Consensus       161 f~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~--~-------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        161 LWILTAGVASMLLGQLLR-PTIMPQGES---RQQ--E-------SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             HHHHHHHHHHHHHHHHcc-CCCCCcccc---ccc--c-------ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence            998876555444333322 222111110   000  0       0011234567788888776554444333 3345567


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHH
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  326 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (522)
                      .|.|+++.|.+..+.|.+.+...++.++..++.+++.||+++++     .+... .....+  .. ....  . .++.+.
T Consensus       228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~l~~~-~~~~~~--~~-~~~~--~-~~~~~~  295 (382)
T PRK11128        228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-----LLLLS-AICGVV--RW-GLMG--S-TTALPW  295 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----HHHHH-HHHHHH--HH-HHHH--h-hhhHHH
Confidence            88898889999999999999888999999999999999999883     32221 111111  11 1111  1 233444


Q ss_pred             HHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHH-HHHHhchhhHHHHHHHHHhhC
Q 009914          327 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF-ESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ..+..++.|++.+...+ ....+..+. +++++++..++.+.. ..++..++|.++|.+.|. .|
T Consensus       296 ~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g  357 (382)
T PRK11128        296 LIVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            56677788888887777 667777776 556678999988744 456678999999999998 44

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.7e-28  Score=239.95  Aligned_cols=358  Identities=11%  Similarity=0.070  Sum_probs=230.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++.++.+.+.+++..+......+.+|. +.+++|+|+.++|++.+++.++..++++++|+++||+|||++++++..+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            345555666777777766666666665 4556999999999999999999999999999999999999998887666554


Q ss_pred             HHHHHHh---hhh-----HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914           84 ATFLVAF---SST-----FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus        84 ~~~~~~~---~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      +......   .+.     +...++.+++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  166 (420)
T PRK09528         89 LFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN  166 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence            4332211   111     1112233333443333333333343332 2 2456778899999999999999999998875


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhh
Q 009914          156 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV  235 (522)
Q Consensus       156 ~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (522)
                            .+|+.+|++.+++.++..++.++..++++++...+++++.+++       +...++.+..+|+|.++.+.+..+
T Consensus       167 ------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~l~~~  233 (420)
T PRK09528        167 ------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS-------AVSLKDALALLKLPKFWFLVLYVI  233 (420)
T ss_pred             ------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccc-------cccHHHHHHHccCCCeEeehHHHH
Confidence                  5899999998888777766666554443322111110000000       111233445667777655444333


Q ss_pred             hccchh-HHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHH
Q 009914          236 TGSFPW-SALSFAAMWLEL----TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  310 (522)
Q Consensus       236 ~~~~~~-~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (522)
                      .....+ ....+.|.|+.+    .+.+..+.+.+.++..+..+++.++.|++.||+++|+     ..... ..+.+.  .
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~-~~l~~~--~  305 (420)
T PRK09528        234 GVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----ALLLA-GTIMAV--R  305 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----hhHHH-HHHHHH--H
Confidence            332222 233456666643    3566678899999999999999999999999999984     22221 111111  1


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHH-HHHHHHHHhchhhHHHHHHHHHhh
Q 009914          311 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHVY  389 (522)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~g~l~~~~~  389 (522)
                       ......  .++ .+.+.....+.+++.+...+ ....++.+..|++.+++..+. .++...+|..++|.+.|++.|. .
T Consensus       306 -~~l~~~--~~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~  379 (420)
T PRK09528        306 -IIGSGF--ATG-PLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-I  379 (420)
T ss_pred             -HHHHHh--ccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-h
Confidence             111111  122 33344556666766665555 456788899999999888766 6777889999999999999998 6


Q ss_pred             Cc
Q 009914          390 GF  391 (522)
Q Consensus       390 g~  391 (522)
                      ||
T Consensus       380 G~  381 (420)
T PRK09528        380 GF  381 (420)
T ss_pred             Cc
Confidence            76

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=2.9e-29  Score=254.21  Aligned_cols=337  Identities=16%  Similarity=0.126  Sum_probs=240.3

Q ss_pred             hHHHHHHHhcCCC---hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009914           27 GVYKEVGAALHTD---PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRAL  103 (522)
Q Consensus        27 ~~~~~~~~~~g~s---~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  103 (522)
                      +..|.+.++++++   +.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5667888999999   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          104 NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+        .+||+.|++.++..++..+..+
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------~~wr~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI--------PDWRWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988765        4599999999998888877777


Q ss_pred             hccCCCCCCCCCCCCCcccc-------------cchh-----hhhhHHH--HHHhhhhhcchhHHHHHHHhhhccchhHH
Q 009914          184 LFANDPHFPDGGTANSDQVS-------------SKSF-----RSDVKVL--IQEAKSVIKIPSFQIIVAQGVTGSFPWSA  243 (522)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~-------------~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (522)
                      +++|+|++...+++.++..+             ....     .++..+.  ....+.++++|.++...+...........
T Consensus       262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  341 (505)
T TIGR00898       262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF  341 (505)
T ss_pred             hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            77777754322221110000             0000     0000000  01334567777766554443333322222


Q ss_pred             HHH-HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 009914          244 LSF-AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  322 (522)
Q Consensus       244 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (522)
                      ..+ .+.+....+.+..   ....+.++..+++.++.+++.||+|||+     .+... ..+.++..  +.+...+.  .
T Consensus       342 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~-----~~~~~-~~~~~~~~--l~~~~~~~--~  408 (505)
T TIGR00898       342 SYYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRY-----TMAAS-LLLAGVAL--LLLLFVPV--D  408 (505)
T ss_pred             HHHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHH-HHHHHHHH--HHHHHcCC--C
Confidence            222 3334445555543   3334556777888999999999999883     22221 11211111  11111221  1


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      ..+......++.+++.+...+ ..+.+..|.+|++.|+++.|+.++...+|+.++|.+.+ +.+
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~  470 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE  470 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH
Confidence            122233444455555555555 67889999999999999999999999999999999988 443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.9e-27  Score=213.71  Aligned_cols=356  Identities=16%  Similarity=0.127  Sum_probs=278.5

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +.+..+..+...+++.++......+++|.+++.++++..|.+++..+++.++.+.+++.|++.+|+|+|+.++.|+.+++
T Consensus        10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a   89 (422)
T COG0738          10 SVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA   89 (422)
T ss_pred             CceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence            34456777788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc--
Q 009914           83 AATFLVA---FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT--  157 (522)
Q Consensus        83 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~--  157 (522)
                      +++.++.   ...++..++++.++.|.|.+...++.+.++....++++..+.+++.+.+.++|.++||++++.+....  
T Consensus        90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~  169 (422)
T COG0738          90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA  169 (422)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence            9999985   45688899999999999999999999999999999988899999999999999999999999987621  


Q ss_pred             ------------ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcch
Q 009914          158 ------------FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIP  225 (522)
Q Consensus       158 ------------~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (522)
                                  ......|+.+|...+...+++.+..... +.|+.+..+.+..+.          ++.  ...+++++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~-k~p~~~~~~~~~~~~----------~~~--~~~~l~~~~  236 (422)
T COG0738         170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS-KLPDLQVAAPSLGAS----------GSA--GLSSLFQNK  236 (422)
T ss_pred             hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-cCCcCCccccccccc----------ccc--hHHHHHhCh
Confidence                        0111358889998888776666655442 223222211110100          000  334567888


Q ss_pred             hHHHHHHHhhhccch-hHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHH
Q 009914          226 SFQIIVAQGVTGSFP-WSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  303 (522)
Q Consensus       226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  303 (522)
                      .++...+..+++... ....+|++.|+.+ .|.+..+++...+....+.++|++++.++.+|+...|     .+....  
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-----~Laf~a--  309 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-----YLAFYA--  309 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHHH--
Confidence            888888887777775 4666899999987 8999999999999999999999999999999988773     322222  


Q ss_pred             HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHH
Q 009914          304 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  383 (522)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~  383 (522)
                      ++.+.+.....+.    ++  .+.....++.|++.+..+| ...+...+..| ++ ....|..-.+..+|+++.|++.|+
T Consensus       310 ~~~ill~~~~~l~----~g--~v~~~~l~~ig~F~simfP-TIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~  380 (422)
T COG0738         310 LIAILLLLAVALI----GG--VVALYALFLIGLFNSIMFP-TIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGV  380 (422)
T ss_pred             HHHHHHHHHHHHh----cC--hHHHHHHHHHHHHhHHHHH-HHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHH
Confidence            1111111111111    12  3355678889999999999 88999999998 33 344444455677899999999999


Q ss_pred             HHHH
Q 009914          384 LAQH  387 (522)
Q Consensus       384 l~~~  387 (522)
                      +.|.
T Consensus       381 i~d~  384 (422)
T COG0738         381 IADM  384 (422)
T ss_pred             HHHh
Confidence            9999

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.3e-27  Score=264.60  Aligned_cols=328  Identities=11%  Similarity=0.011  Sum_probs=239.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Q 009914           41 TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIAL---GAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQS  117 (522)
Q Consensus        41 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  117 (522)
                      ...++..+++.++++++++++|+++||+|||+++..   ..++.++..+.....++++.++++|+++|++.++..|+..+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457888899999999999999999999999997533   22222233333334489999999999999999999999999


Q ss_pred             HHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 009914          118 LVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA  197 (522)
Q Consensus       118 ~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  197 (522)
                      ++.+++++++|++++|+.+++.++|.++||++++++...     .+|++.|+..++..++..++.+++++.++.....+ 
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-----GNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLK-  205 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCe-
Confidence            999999999999999999999999999999999999987     89999995555555554444444544332111100 


Q ss_pred             CCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhcc
Q 009914          198 NSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLG  275 (522)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  275 (522)
                        .   ...   ..++....++.+.+++.++...+..+.... ......++|.|+++ +|.+....+++.+..+++.+++
T Consensus       206 --~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig  277 (1140)
T PRK06814        206 --I---DRN---IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVG  277 (1140)
T ss_pred             --e---ccc---hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence              0   001   112334456677788888877665554444 34556789999975 8999999999999999999999


Q ss_pred             chhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH---------------hCCCCCchhHHHHHHHHHHHHHHhc
Q 009914          276 GLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL---------------VLPDDPSTPVMHGLVLVVTGLFISW  340 (522)
Q Consensus       276 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~g~~~~~  340 (522)
                      .++.+++.++..+++.     ..... ++.++....+.+.               .+.. ....+.+.+..+++|++.+.
T Consensus       278 ~~~~g~l~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~  350 (1140)
T PRK06814        278 SFLASKLSEGRITLLY-----VPIGA-LLMGLFGLDLAFASSSVPAEPAQLKSILVFLS-KRHGWRILIDLFGLAAAGGL  350 (1140)
T ss_pred             HHHHHHHhCCceeeee-----ehHHH-HHHHHHHHHHHhcccccccccccccchhhhhc-ccccHHHHHHHHHHHHHHHH
Confidence            9999999987665532     11111 1111111111110               0000 12234455677778888888


Q ss_pred             cCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          341 NAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ..+ ...+++++.+|++.+|+++|+.+++..++..+++.+.|.+.+...+
T Consensus       351 ~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~  399 (1140)
T PRK06814        351 YIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFS  399 (1140)
T ss_pred             hHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            887 7899999999999999999999999999999999999999865333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=2.4e-27  Score=232.65  Aligned_cols=346  Identities=13%  Similarity=0.042  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHHhhhh-hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhch-hHHHHHHHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLL-PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNR-AHVIALGAFLWAAATFLV   88 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~gr-r~~l~~~~~~~~~~~~~~   88 (522)
                      +++.++..+....+. +++.+.+.+++|.+..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            455556666666665 666667778899999999999999999999999999999999965 778888888888888888


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhc--------cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009914           89 AFSSTFAQVAISRALNGIGLALVAPAIQSLVADS--------TDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG  160 (522)
Q Consensus        89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~  160 (522)
                      .+.++++.+++.|++.|++.+...+...++...+        .....|.+.+|      .+|.++|+.+++.+...    
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~----  156 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE----  156 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc----
Confidence            8888999999999999998877777766654322        22223444444      47889999998877332    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccch
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP  240 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (522)
                       ..|+ +|++.+++.++..++.++++|+|+.++++   +  . +  ..   +......+..+|+|.++.+....++....
T Consensus       157 -~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~---~--~-~--~~---~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  223 (418)
T TIGR00889       157 -LSNI-QLYITAGSSALLGVFALTLPDIPVAKSTA---K--M-S--IK---VMLGLDAFILFKNKRMAIFFFFSMLLGAP  223 (418)
T ss_pred             -chhH-HHHHHHHHHHHHHHHHhcCCCCCCCcccc---c--c-C--HH---HHhhhhHHHHhcCCCeeeHHHHHHHHHhH
Confidence             3344 46666666666655544454433211110   0  0 0  00   11111233467777766655554444332


Q ss_pred             -hHHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          241 -WSALSFAAMWLELTGFSH--------EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       241 -~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                       .....+.+.++++.|.++        ...+...++..+..+++.++.+++.||+++|+     .+.... .+.++  ..
T Consensus       224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-----~l~~~~-~~~~v--~~  295 (418)
T TIGR00889       224 LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-----VMLLSL-VAWAL--RF  295 (418)
T ss_pred             HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHH-HHHHH--HH
Confidence             234456788887766553        56688999999999999999999999999984     322221 11111  11


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHH-HHHHHHhchhhHHHHHHHHHh
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR-SFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      ..+..........+.+.+..++.|++.+...+ ....++.|.+|++.|++++|+.+ ....++..++|.+.|++.|+.
T Consensus       296 ~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~  372 (418)
T TIGR00889       296 GFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM  372 (418)
T ss_pred             HHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            11111111111233455567778888777666 67788999999999999999997 567899999999999999984

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.3e-27  Score=224.87  Aligned_cols=400  Identities=14%  Similarity=0.133  Sum_probs=278.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHH--------HHhcC--CChh----hhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHH
Q 009914           13 LAGIMERADESLLPGVYKEV--------GAALH--TDPT----GLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGA   78 (522)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~--------~~~~g--~s~~----~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~   78 (522)
                      ++.+-.++....+++..+.+        .+.+|  .++.    ..+.+.+++.+|.+++++..|.++||+|||..+.+..
T Consensus        18 ~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~   97 (485)
T KOG0569|consen   18 LGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSN   97 (485)
T ss_pred             HhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            33344555555555444333        34455  3333    3577889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHh-hh
Q 009914           79 FLWAAATFLVAFS---STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVV-MA  154 (522)
Q Consensus        79 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~-l~  154 (522)
                      ++..++.+++.++   ++++.++++|++.|+..+.......-++.|..|++.||......+.+..+|.+++..++.. +.
T Consensus        98 ~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il  177 (485)
T KOG0569|consen   98 LLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL  177 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence            8888887777664   6889999999999999999999999999999999999999999999999999999776643 22


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCC-CCCCCcccc-------c---chhh----hhhHHH-----
Q 009914          155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG-GTANSDQVS-------S---KSFR----SDVKVL-----  214 (522)
Q Consensus       155 ~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~---~~~~----~~~~~~-----  214 (522)
                      ..    ...|++.+.+..+++++..+...++||+|++.-. +++.++.++       .   +...    ++.++.     
T Consensus       178 Gt----~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~  253 (485)
T KOG0569|consen  178 GT----EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKK  253 (485)
T ss_pred             CC----CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccc
Confidence            22    1579999999999999999999999999998654 222111100       0   0000    000000     


Q ss_pred             -HHHhhhhhcchhHHH-----HHHHhhhcc-chhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhh
Q 009914          215 -IQEAKSVIKIPSFQI-----IVAQGVTGS-FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS  287 (522)
Q Consensus       215 -~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  287 (522)
                       ....+++++++..+.     +.+...... ..+....|...++++.|++..++.+.....++..++.++++.++.||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             011234555543332     222222222 2345566777888899999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh--HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHH
Q 009914          288 ARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP--VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM  365 (522)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  365 (522)
                      ||+     +++..........+..............+  +..+.+.++..++.+....|+.+-+.+|++|++.|..+.++
T Consensus       334 RRp-----Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~  408 (485)
T KOG0569|consen  334 RRP-----LLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV  408 (485)
T ss_pred             CcH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence            984     44433322222222222211111111111  22234555555555555444789999999999999999999


Q ss_pred             HHHHHHHHhchhhHHHHHHHHHhhCcccCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHH
Q 009914          366 DRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRE  445 (522)
Q Consensus       366 ~~~~~~~~~~i~~~~~g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (522)
                      ...++.+..++.....-.+.+..++|                          .   +.+..+.+++...+.+++.|++|+
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~~--------------------------~---filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGPY--------------------------V---FILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcch--------------------------h---hHHHHHHHHHHHHHHHHhCcccCC
Confidence            99999999999988888888884222                          1   334444566667778888999987


Q ss_pred             HHHHH
Q 009914          446 RARME  450 (522)
Q Consensus       446 ~~~~~  450 (522)
                      +...+
T Consensus       460 r~~~e  464 (485)
T KOG0569|consen  460 RTPYE  464 (485)
T ss_pred             CCHHH
Confidence            76544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.3e-28  Score=237.86  Aligned_cols=277  Identities=19%  Similarity=0.246  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHhhhh-hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLL-PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      ..++..++....+...+ ...+..+.++.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+++++..++
T Consensus        48 ~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~  127 (495)
T KOG2533|consen   48 PFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFL  127 (495)
T ss_pred             HHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            33444444444444332 22233355888999999999999999999999999999999999999999999999888888


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccCCCCchH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-FMGIPGWRI  166 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~~~~~gw~~  166 (522)
                      .....|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|.+++..+.... .....||||
T Consensus       128 ~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~  207 (495)
T KOG2533|consen  128 TAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRW  207 (495)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCcee
Confidence            8889999999999999999999999999999999999999999999999999999999999999865422 123489999


Q ss_pred             HHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCC--------cccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc
Q 009914          167 SFHIVGLISVVVGTLVRL-FANDPHFPDGGTANS--------DQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG  237 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (522)
                      .|++.|+++++..++.++ +|.+|....-.++++        ++.......+  +......++.+++|..|.+.+..++.
T Consensus       208 ~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~dp~vw~~~l~~~~~  285 (495)
T KOG2533|consen  208 LFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIEN--KFKWKGFKEALKDPGVWPFSLCYFFL  285 (495)
T ss_pred             ehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCccc--ccCHHHHHHHHhchhHHHHHHHHHHH
Confidence            999999999999988877 566665322111111        0000000000  13345667788899998887776666


Q ss_pred             cc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhh
Q 009914          238 SF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS  287 (522)
Q Consensus       238 ~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  287 (522)
                      .. .++..+|+|.|+++ .|++..+++.+.....++++++.+++|+++||.+
T Consensus       286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            66 46788999999987 6799999999999999999999999999999953

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=3.2e-27  Score=228.34  Aligned_cols=325  Identities=15%  Similarity=0.147  Sum_probs=233.5

Q ss_pred             hhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-----chhHH-HHHHHHHHHHHHHHHHhh---h
Q 009914           22 ESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-----NRAHV-IALGAFLWAAATFLVAFS---S   92 (522)
Q Consensus        22 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----grr~~-l~~~~~~~~~~~~~~~~~---~   92 (522)
                      .....+.+|.+.+++|+|.+++|++... .+...+ .+++|+++||+     ||||. ++.+.++.++..+.+++.   .
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            3456788999999999999999999755 555555 99999999998     88886 567777777777777776   4


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC--------c
Q 009914           93 TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG--------W  164 (522)
Q Consensus        93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g--------w  164 (522)
                      +++.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+...     .+        |
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-----~g~~~~~~~~w  156 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-----EFANTGLITLW  156 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccccccccccc
Confidence            5666777888889998999999999999999999999999999999999999999999988876     45        9


Q ss_pred             hHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh---HHHHHHHhhhccc-h
Q 009914          165 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS---FQIIVAQGVTGSF-P  240 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~  240 (522)
                      |.+|++.++..++..+..++..+|++..+++    ++    +..   ++..+..+.+++++.   ++......+.... .
T Consensus       157 r~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~----~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTLFLAKEPQEDASV----PK----PLT---QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGD  225 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCccccc----ch----hHH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            9999999988777666555544444321110    00    001   112233445555553   4444433333333 4


Q ss_pred             hHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 009914          241 WSALSFAAMWLELTGFSHEKTAFLMALFV-IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (522)
                      +...++.|.|++++|++..+.+.+....+ ++.+++.++++++.||+++|+     .+... ..+..+......+.....
T Consensus       226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~~~-~~~~~~~~~~~~~~~~~~  299 (356)
T TIGR00901       226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-----ALLLF-GIVQALTNAGFVWLASNG  299 (356)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHH-HHHHHHHHHHHHHHHhcC
Confidence            45667899999889999999998888766 577899999999999999874     22221 122222111111111010


Q ss_pred             C-----CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHH
Q 009914          320 D-----PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  371 (522)
Q Consensus       320 ~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (522)
                      .     .+..+....+.++.+++.+...+ ...+++.|.+|+++||+.+|+.++..+
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       300 HHDGITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cccccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            0     02334455566677888887778 889999999999999999999987654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=2.9e-26  Score=228.00  Aligned_cols=378  Identities=12%  Similarity=0.058  Sum_probs=253.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHH-Hh--cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVG-AA--LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAF   79 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~   79 (522)
                      ..+.+..+.+..+...+..+...+.+|.+. ++  +|.+..+.|++.+.+.++..++++++|+++|| +|||+++.++.+
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~   87 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI   87 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence            446677777888888888877777777665 44  89999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           80 LWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSN---RGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      +.+++.++++++++++.+++.|++.|++.|...+...+++++++|+++   |++++++.+.+.++|.++||.+++++.+.
T Consensus        88 ~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~  167 (475)
T TIGR00924        88 VLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN  167 (475)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999888899999999999999999999999999998754   88899999999999999999999999887


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC-Ccccccchhhh-------------------hhH----
Q 009914          157 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN-SDQVSSKSFRS-------------------DVK----  212 (522)
Q Consensus       157 ~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~----  212 (522)
                           .||++.|.+.++..++..+...+..+..+..+.+++. ++++.+.....                   ...    
T Consensus       168 -----~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (475)
T TIGR00924       168 -----YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANIL  242 (475)
T ss_pred             -----cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence                 7999999998865555443333333221111100000 00000000000                   000    


Q ss_pred             --------------HHHH-Hhhhhhcch--hHHHHHHHhhhccchhH-HHHHHHHHHHH-hCCCh----hHHHHHHHHHH
Q 009914          213 --------------VLIQ-EAKSVIKIP--SFQIIVAQGVTGSFPWS-ALSFAAMWLEL-TGFSH----EKTAFLMALFV  269 (522)
Q Consensus       213 --------------~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~----~~~~~~~~~~~  269 (522)
                                    ...+ .....-+++  .+..+.+........+. ..+.++.+.++ .+.+.    ...+++.++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~  322 (475)
T TIGR00924       243 LMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNP  322 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhH
Confidence                          0000 000011111  22222332223333332 23345666643 33221    12668888888


Q ss_pred             HHHhccchhhhhhhhHhhhcCCCchhHH---HHHHHHHHHHHHHHHHH-HhCCCCCchhHHHHHHHHHHHHHHhccCCCc
Q 009914          270 IASSLGGLFGGRMGDFLSARFPNSGRII---LAQISSLSAIPLAALLL-LVLPDDPSTPVMHGLVLVVTGLFISWNAPAT  345 (522)
Q Consensus       270 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (522)
                      +..++..++..++..|.++|........   ...+...+++....+.. ........+.++.....++.+++.....| .
T Consensus       323 ~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p-~  401 (475)
T TIGR00924       323 FWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISP-L  401 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-H
Confidence            8888877776666566655421111122   22222111211111110 11111134556677889999999999999 9


Q ss_pred             chhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          346 NNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ..+++.+..|++.||+++|+......+|..+++.+.....+.
T Consensus       402 ~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       402 GLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999988888888888887766554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=2.8e-27  Score=235.52  Aligned_cols=342  Identities=16%  Similarity=0.170  Sum_probs=241.9

Q ss_pred             hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH----hchhH-HHHHHHHHHHHHHHHHHhhhh------H
Q 009914           26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR----HNRAH-VIALGAFLWAAATFLVAFSST------F   94 (522)
Q Consensus        26 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~grr~-~l~~~~~~~~~~~~~~~~~~~------~   94 (522)
                      ..+.+++.+++|+++.++|++.++..+..++.+|+.|+++||    +|||| .++.+....+++.+++.+.++      .
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            446667888999999999999999999999999999999998    67744 577888888888888777653      4


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cCCCCchHHHHHH
Q 009914           95 AQVAISRALNGIGLALVAPAIQSLVADST-DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF--MGIPGWRISFHIV  171 (522)
Q Consensus        95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~--~~~~gw~~~f~~~  171 (522)
                      ..+++.+++.+++.+...++..++..+.. ++++|++..++.+.+..+|.++++.+.+.+.....  ....+||+.+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56677888899998888888889999987 46889999999999999998888777666553210  1236899999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHH-HHHHHHH
Q 009914          172 GLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSA-LSFAAMW  250 (522)
Q Consensus       172 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  250 (522)
                      +++.++..++.++..+|++...+++    ++++       .+..+..+.++++|.++..+...++....+.. ..+.+.|
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~~~~~----~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSEIPKN----IEKK-------LSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY  248 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCCCCcc----cccC-------CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence            9888888776665444432111100    0001       01223455677888887766555544443322 2344455


Q ss_pred             HHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHH
Q 009914          251 LEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGL  329 (522)
Q Consensus       251 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (522)
                      .+. ++ +....+.+..+..++.+++.++.+++.||+++|+     ...... .+..+.  ...+....   +..+...+
T Consensus       249 ~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----~~~~~~-~~~~~~--~~~~~~~~---~~~~~~~~  316 (437)
T TIGR00792       249 FTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----LFAGGI-LLMVLG--YLIFFFAG---SNLPLILV  316 (437)
T ss_pred             EeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHH-HHHHHH--HHHHHHcc---hhHHHHHH
Confidence            543 44 5566777777888999999999999999999873     332221 111111  11111111   22333455


Q ss_pred             HHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          330 VLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      ..++.|++.+...+ ..++++.|..|       ++.+|+++|+.+....++..+++.+.|.+.+. .||.
T Consensus       317 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~  384 (437)
T TIGR00792       317 LIILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence            66677777777666 67888888765       56689999999999999999999999999998 7875

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=1.9e-26  Score=226.07  Aligned_cols=356  Identities=9%  Similarity=0.021  Sum_probs=240.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      .++.+...+++.......+.+.+|.+ .+++|.++.+.|++.+++.++..++++++|+++||+|||+.++.+....+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34556667777777777777777755 56799999999999999999999999999999999999999988776665544


Q ss_pred             HHHH---hhh-----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009914           86 FLVA---FSS-----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT  157 (522)
Q Consensus        86 ~~~~---~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~  157 (522)
                      ....   +.+     .+..+++.+++.|++.+...+...++..+..+  +++..++......++|.++||++++.+.+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--  158 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS--  158 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc--
Confidence            3221   111     23345667888899888888888888777532  34567788888899999999999998865  


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc
Q 009914          158 FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG  237 (522)
Q Consensus       158 ~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (522)
                          .+|+.+|++.+++.++..++.+...++++.++.+++..+.+.++       +..++.++.+|+|.++.++...+..
T Consensus       159 ----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~l~~~~~  227 (396)
T TIGR00882       159 ----IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASA-------FSLKLALELFRQRKFWMFVLYVVGV  227 (396)
T ss_pred             ----cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCC-------CCHHHHHHHHcCCcHHHHHHHHHHH
Confidence                59999999998888877766655444432211111000000000       1112345667788776554444333


Q ss_pred             cchh-HHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 009914          238 SFPW-SALSFAAMWLELT----GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  312 (522)
Q Consensus       238 ~~~~-~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (522)
                      ...+ ....+.+.|+++.    +.+....+...+...+...++.+..+++.||+++|+     .+.... .+.++  ...
T Consensus       228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----~l~~~~-~l~~l--~~~  299 (396)
T TIGR00882       228 ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----ALLIAG-TIMSV--RII  299 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hHHHHH-HHHHH--HHH
Confidence            3322 3334677777653    455667888888888899999999999999999984     222211 11111  111


Q ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHH-HHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          313 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      . ...  .. +.+.+....++.|++...... ....+..+..|++.+++..+. .+....+++.++|.+.|++.|. .||
T Consensus       300 ~-~~~--~~-~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~  373 (396)
T TIGR00882       300 G-SSF--AT-TALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGF  373 (396)
T ss_pred             H-HHh--cC-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-ccc
Confidence            1 111  12 233344556666766554443 345566777788888887766 6778899999999999999998 576

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.6e-27  Score=234.69  Aligned_cols=373  Identities=17%  Similarity=0.202  Sum_probs=286.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      |.+.+..++......-....++.+.+.+.++++.+..+++|+.++......+..|+.+.+.||+|.|.+.++|.++.+++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            44555555666666556667788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHH-HHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           85 TFLVAFSSTFAQVAI-SRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      .++..+++++|.+++ .-++.|+|.++.+.+...++..+| +++|+.++|+...+.++|.++-|.+...+.+.     +|
T Consensus       125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-----~G  198 (509)
T KOG2504|consen  125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK-----YG  198 (509)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH-----hC
Confidence            999999999988876 568899999999999999999888 46799999999999999999999999999998     99


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccCCCCCC-CC--------------------CCCC--Ccccc------------cchhh
Q 009914          164 WRISFHIVGLISVVVGTLVRLFANDPHFP-DG--------------------GTAN--SDQVS------------SKSFR  208 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~--------------------~~~~--~~~~~------------~~~~~  208 (522)
                      ||+.+++.+.+.+-..+......+.+... +.                    ....  +....            .++.+
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKW  278 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccc
Confidence            99999999988877666665544311110 00                    0000  00000            00000


Q ss_pred             h--hhHHHH-HHhhhhhcchhHHHHHHHhhhccch-hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhh
Q 009914          209 S--DVKVLI-QEAKSVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGD  284 (522)
Q Consensus       209 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  284 (522)
                      .  ..+... .....+++++.++.+.....+.... +....++|.|.+..|++..+++.+.++.++..++++++.|++.|
T Consensus       279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD  358 (509)
T KOG2504|consen  279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD  358 (509)
T ss_pred             cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC
Confidence            0  011111 1124678889998887777776664 44556799999999999999999999999999999999999999


Q ss_pred             HhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHH
Q 009914          285 FLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYA  364 (522)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (522)
                      +...++     .....++++....    .....+.. ...+.+.....++|+..+.... ....++.|+++.++-..++|
T Consensus       359 ~~~~~~-----~~~~~~~ll~~gl----~~~~~p~~-~~~~~l~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  359 KPGIRA-----LVLFLLTLLIAGL----ARLFLPFA-TTYVGLIVFSILFGFCVGSFSS-LTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             ccccch-----HHHHHHHHHHHHH----HHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcchHHH
Confidence            988542     2222222222211    11222222 3335577788888998888777 66679999999999999999


Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHhhCcccC
Q 009914          365 MDRSFESILSSFAPPVVGILAQHVYGFKPI  394 (522)
Q Consensus       365 ~~~~~~~~~~~i~~~~~g~l~~~~~g~~~~  394 (522)
                      +...++.++..+||++.|++.|....|...
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHA  457 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence            999999999999999999999996557543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=4.6e-27  Score=239.89  Aligned_cols=282  Identities=18%  Similarity=0.251  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      ++.+.+..+...+.....+..++.+.++++++.++.|++.+.+.++++++.++.|++.||+|||+++.++.++++++.++
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            34555567777777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh---------------------------------------------------hHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           88 VAFSS---------------------------------------------------TFAQVAISRALNGIGLALVAPAIQ  116 (522)
Q Consensus        88 ~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~  116 (522)
                      +++.+                                                   .+..++++|+++|+|.+..++...
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            88763                                                   245678899999999999999999


Q ss_pred             HHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc----------------CC-CCchHHHHHHHHHHHHHH
Q 009914          117 SLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM----------------GI-PGWRISFHIVGLISVVVG  179 (522)
Q Consensus       117 ~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~----------------~~-~gw~~~f~~~~~~~~i~~  179 (522)
                      +++.|++|+++|++++++......+|.++|+++++++.+....                .. .+|+..|++.+++.++..
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998754200                00 137888999998888877


Q ss_pred             HhhhhccCCCCCCCC-CC-C-CCcc---c-cc---chhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHH
Q 009914          180 TLVRLFANDPHFPDG-GT-A-NSDQ---V-SS---KSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAA  248 (522)
Q Consensus       180 ~~~~~~~~~~~~~~~-~~-~-~~~~---~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  248 (522)
                      +..++++++.+.... .+ + .+++   + .+   .......++..+..+.++++|.++...+..+.... .++..+|+|
T Consensus       275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP  354 (633)
T TIGR00805       275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP  354 (633)
T ss_pred             HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776677765332211 00 0 0000   0 00   00111234455667789999999888766665555 466778999


Q ss_pred             HHHH-HhCCChhHHHHHHHHHHH-HHhccchhhhhhhhHhhhc
Q 009914          249 MWLE-LTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSAR  289 (522)
Q Consensus       249 ~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~~~~~  289 (522)
                      .|++ ++|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus       355 ~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       355 KYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9997 599999999999988776 5688999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=1.4e-25  Score=219.38  Aligned_cols=356  Identities=12%  Similarity=0.031  Sum_probs=246.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHH--HHHHHHHHHhhhhhHHH-HHHHhchhHHHHHHHHH-HHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSL--TLFRSIVQASCYPIAAY-LAIRHNRAHVIALGAFL-WAA   83 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~s~~~~~~~i~~~~~G~-l~Dr~grr~~l~~~~~~-~~~   83 (522)
                      +..+...++.+++..+...+.+|.+.++.|.|.+++|++  .++..+...+.+|+++. ..||+||||..++...+ .++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            566777889999999999999999999999999999997  46678888888888854 78999998886555433 222


Q ss_pred             HHHHHH-h--hhh-HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009914           84 ATFLVA-F--SST-FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM  159 (522)
Q Consensus        84 ~~~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~  159 (522)
                      .....+ +  ..+ ...++...++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++.+.   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---  159 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---  159 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            222222 1  222 333444556666777888888888999998888888899999999999999999999998887   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF  239 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (522)
                        .|||.+|++.+++.++..+..++++++++.+++ +    +          +...+..++.+|+|.++..+...+....
T Consensus       160 --~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~----~----------~~~~~~~~~~l~~~~~~~~~~~~~l~~~  222 (390)
T TIGR02718       160 --FGQRPAFLLVACVPLASLVCVLWLKDRAVASPE-A----P----------LARRASLFRFFRRPLAWSLLALALLSAM  222 (390)
T ss_pred             --hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-c----c----------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence              899999999998887777666555543321110 0    0          0111234556777776655544444443


Q ss_pred             -hhHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 009914          240 -PWSALSFAAMWLELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  317 (522)
Q Consensus       240 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (522)
                       ......+.+.|+++.|+++++.|.+....++ ..+++.++.|++.||+++++     .+...........+........
T Consensus       223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~~~~~~~~~~~~~~~~~~~~  297 (390)
T TIGR02718       223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-----TFILGVGLAGSLALLWFAQAAF  297 (390)
T ss_pred             HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHc
Confidence             3455667888998899999999999888764 66677899999999999883     3332221111111111111111


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCc-chhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          318 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE-KSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .. ............+.++..+...+ ...+...+..++ +.+++.+++.+...+++..++|.+.|.+.|. .||
T Consensus       298 ~~-~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~  369 (390)
T TIGR02718       298 WL-APGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGY  369 (390)
T ss_pred             cc-CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc
Confidence            11 11122222333344445555555 566666677665 8899999999999999999999999999998 565

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.8e-25  Score=200.31  Aligned_cols=338  Identities=16%  Similarity=0.169  Sum_probs=265.3

Q ss_pred             HHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           19 RADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVA   98 (522)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~   98 (522)
                      --.....+++++.+.+++|+|.+..|++.++..+...+.+++..++..|+|.++.+..++++.+++.++-... +.+.++
T Consensus        25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~  103 (395)
T COG2807          25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLF  103 (395)
T ss_pred             chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence            3344668899999999999999999999999999999999999999999999999999999999999998877 788899


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHH
Q 009914           99 ISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVV  178 (522)
Q Consensus        99 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~  178 (522)
                      .+-.+.|.+.+...+...+++.+.+|+ +-+..++++....++|..+++.+...+.++.    .+||....+.+.++++.
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW~~aL~~WAl~allA  178 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGWRGALGFWALLALLA  178 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999975 4799999999999999999999999998872    48999999999988887


Q ss_pred             HHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc-cchhHHHHHHHHHHHHhCCC
Q 009914          179 GTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG-SFPWSALSFAAMWLELTGFS  257 (522)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~  257 (522)
                      .+.++.-...++....+.                 .......++|+|.-|.+.+.+-.. ..+|..+.|+|.++.+.|+|
T Consensus       179 l~~WlPq~~r~~~~~~~~-----------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s  241 (395)
T COG2807         179 LLIWLPQALREQAASIAT-----------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS  241 (395)
T ss_pred             HHHHhhhccccccccccc-----------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence            776543221111111100                 001123467888766665554444 44788899999999999999


Q ss_pred             hhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Q 009914          258 HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLF  337 (522)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  337 (522)
                      +.++|.+.++..+.++..++....+.+|.+.++     .+..............+.  ..+.   ..++..  .+++|++
T Consensus       242 a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r-----~~~~~~~~~~l~G~~G~~--~~P~---~~~~lw--~~llG~G  309 (395)
T COG2807         242 AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR-----PLVVLALLLMLVGLVGLL--LAPG---QLPILW--ALLLGLG  309 (395)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHH--Hhhh---hHHHHH--HHHHhCc
Confidence            999999999999999999999999999876664     233322222222222222  2222   222122  5788998


Q ss_pred             HhccCCCcchhhhhhhc-CcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          338 ISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       338 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .+..++ .....+.+.. .++..++-.|+.+.++++..++||.+.|++.|...+|.
T Consensus       310 ~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~  364 (395)
T COG2807         310 QGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS  364 (395)
T ss_pred             cchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence            888888 6666665554 55777888999999999999999999999999976663

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=6.1e-26  Score=252.52  Aligned_cols=361  Identities=14%  Similarity=0.088  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHHHHh-hhhhhHHHHHHHhcCCCh--hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADE-SLLPGVYKEVGAALHTDP--TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +.+..++++.++..+.. .....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~   88 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHH
Confidence            34444555555544443 444555566666677654  447999999999999999999999999999999998887766


Q ss_pred             HHHHHHH---hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc--
Q 009914           83 AATFLVA---FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT--  157 (522)
Q Consensus        83 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~--  157 (522)
                      +..++..   ..++++.++++|+++|++.+...++..+++.|++|+++|++++++...+.++|.++|+++++++....  
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~  168 (1146)
T PRK08633         89 GLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNG  168 (1146)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5555443   34689999999999999999999999999999999999999999999999999999999999987530  


Q ss_pred             --ccCCCCchHHHHHHHHHHHHHH-HhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHh
Q 009914          158 --FMGIPGWRISFHIVGLISVVVG-TLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG  234 (522)
Q Consensus       158 --~~~~~gw~~~f~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (522)
                        .....+|++.+.+..+...+.. ++.+.+++.++......+  +  ..   ....+...+.++.+++++.++..++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~  241 (1146)
T PRK08633        169 NTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--K--KK---YLFPKLLWRNLKLLRSDRVLWLAIIGL  241 (1146)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--c--cc---cccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence              0001244454444443333333 333334443332211110  0  00   011133344566677888777665544


Q ss_pred             hhccc-hhHHHHHHHHHHH-HhCCChh-HHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          235 VTGSF-PWSALSFAAMWLE-LTGFSHE-KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       235 ~~~~~-~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      ++... .+....++|.|++ .+|++.. ..+++.+...++.+++.++.+++.||+++++.     +... .++.++  ..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~-----~~~~-~~~~~~--~~  313 (1146)
T PRK08633        242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL-----VPLG-ALGLAL--SL  313 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc-----hhHH-HHHHHH--HH
Confidence            44333 3445567888886 5899988 99999999999999999999999999887742     2111 111111  11


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      +.+. .   ..+.+...+..++.|++.+...+ ...+++.+..|++.||+++|+.+++..++..+++.+++.+..
T Consensus       314 ~~~~-~---~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        314 FLLP-T---APSLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHH-H---hhhHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 1   12344455677788888887777 678999999999999999999999999998888777766554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=1.1e-25  Score=223.73  Aligned_cols=375  Identities=13%  Similarity=0.059  Sum_probs=247.9

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLP-GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFL   80 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~~   80 (522)
                      +.++.++.+++..+...+..+... .+..++.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++++.++
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            456777777778888777776554 45556678899999999999999998888899999999999 9999999999999


Q ss_pred             HHHHHHHHHhhhhHHH-HHHHHHHHHHHhhhhHHHHHHHHhhccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009914           81 WAAATFLVAFSSTFAQ-VAISRALNGIGLALVAPAIQSLVADSTDDS--NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT  157 (522)
Q Consensus        81 ~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~  157 (522)
                      ++++.++++++++... ++++|+++|+|.|...|...+++.|.+|++  +|+++++++..+.++|..+||.+++++.+. 
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-  169 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-  169 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9999999998876444 558999999999999999999999999876  457799999999999999999999999988 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchh----------------hh--hhHH-----
Q 009914          158 FMGIPGWRISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSF----------------RS--DVKV-----  213 (522)
Q Consensus       158 ~~~~~gw~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~-----  213 (522)
                          .|||+.|++.++. ++..++.+. ..+..+....+.++++.+.....                .+  ....     
T Consensus       170 ----~gw~~~F~i~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (489)
T PRK10207        170 ----FGYSVTYNLCGAG-LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIV  244 (489)
T ss_pred             ----hChHHHHHHHHHH-HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence                8999999997553 333333333 22111111000000000000000                00  0000     


Q ss_pred             ---------HH--HHhhhhhcchhHHHHHHH--hhhccchhHH-HHHHHHHHHH-hCCCh----hHHHHHHHHHHHHHhc
Q 009914          214 ---------LI--QEAKSVIKIPSFQIIVAQ--GVTGSFPWSA-LSFAAMWLEL-TGFSH----EKTAFLMALFVIASSL  274 (522)
Q Consensus       214 ---------~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~g~~~----~~~~~~~~~~~~~~~~  274 (522)
                               ..  ...++.+|+|.+....+.  .......+.. .+.++.+.++ .+.+.    .....+..+..+..++
T Consensus       245 ~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii  324 (489)
T PRK10207        245 LSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVV  324 (489)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHH
Confidence                     00  011234555555443322  2222222322 2456677653 22211    1234455555566767


Q ss_pred             cchhhhhhhhHhhhcCCCchhHHHHHHHHHH-HHHHHHH--H--HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhh
Q 009914          275 GGLFGGRMGDFLSARFPNSGRIILAQISSLS-AIPLAAL--L--LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPI  349 (522)
Q Consensus       275 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  349 (522)
                      .+++.+++.||+++|+..........++.++ ++.....  .  .........+.++.....++.|++.....+ ...+.
T Consensus       325 ~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~-~g~~~  403 (489)
T PRK10207        325 ASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISA-LGLAM  403 (489)
T ss_pred             HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence            7888899999999885311111122221111 1111111  0  111111122344466788899999999999 88999


Q ss_pred             hhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          350 FAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       350 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      +.+..|++.++.++|+.+...++|+.++..+.+..
T Consensus       404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888887776654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-27  Score=215.22  Aligned_cols=327  Identities=19%  Similarity=0.216  Sum_probs=243.5

Q ss_pred             HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHH
Q 009914           34 AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAP  113 (522)
Q Consensus        34 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  113 (522)
                      ++++.+.+++|++++...+.+.+.+++.|.+.||+|+|..+++|+..+.++++++++..+++.++++|.+||+|.++...
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 009914          114 AIQSLVADSTDDS-NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP  192 (522)
Q Consensus       114 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  192 (522)
                      +..++++|.+|++ +|++++|+...+.++|.++||++||.+++.     .|.+.+|++.+++.++-..+.++..+..+..
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-----AGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-----cCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            9999999999875 589999999999999999999999999998     8999999999999999888887766432222


Q ss_pred             CCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHH-HHHHHHH-HHhCCChhHHHHHHHHHHH
Q 009914          193 DGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVI  270 (522)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~~~~  270 (522)
                      ....   ++             ...+++++++|.++.............++. ..++.+. +.+..+..+.|..+....+
T Consensus       254 ~~~~---~~-------------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~  317 (464)
T KOG3764|consen  254 PDST---EQ-------------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASL  317 (464)
T ss_pred             cccc---cc-------------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccccc
Confidence            2111   00             023445677887777665554444433332 3456655 4566556688999999999


Q ss_pred             HHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCC--Ccchh
Q 009914          271 ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAP--ATNNP  348 (522)
Q Consensus       271 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~  348 (522)
                      ...++..+.|.+.||++..+     ......+..+    ..+.....+.... +.-+++..+..+++.+....  .....
T Consensus       318 ~y~ig~~lfg~la~k~~~~~-----wl~~~~gl~~----~G~~~~~iP~~~~-~~~L~vp~~~l~~~i~~~dasl~P~l~  387 (464)
T KOG3764|consen  318 SYAIGTNLFGKLADKYPHLR-----WLLSLGGLAT----VGVSSGPIPFATS-IAQLWVPNFGLGFGIGLADASLIPTLG  387 (464)
T ss_pred             chhccCchHHHHHHhcCchh-----HHHHHHHHHH----HHHHhchhHhhhh-HHHHhhhhHHHHHHHHHHHHHHhhhhH
Confidence            99999999999999999652     2222222221    1122222222222 22133333333333332222  01344


Q ss_pred             hhhhhcCcc---hhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          349 IFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       349 ~~~~~~~~~---~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      +..|....+   ..|.++++......++.++||.++|.+.+. .|+.
T Consensus       388 ~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~  433 (464)
T KOG3764|consen  388 YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFE  433 (464)
T ss_pred             HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHH
Confidence            444444444   678999999999999999999999999998 6763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.95  E-value=9.4e-25  Score=218.22  Aligned_cols=373  Identities=13%  Similarity=0.110  Sum_probs=245.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHH----Hhch-hHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPG-VYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI----RHNR-AHVIA   75 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~gr-r~~l~   75 (522)
                      +-..+..+...++.+...+......+ +..++.+.+|+++.++|.+..+..+..++..|+.|+++|    |+|| |+.++
T Consensus         2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429          2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            33344444555666665555555554 455677788999999999999999999999999999999    5698 55677


Q ss_pred             HHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHhhhhHHHHHHHHhhcc-CCCchhHHHHHHHHHHHHHHHHHHH
Q 009914           76 LGAFLWAAATFLVAFSST------FAQVAISRALNGIGLALVAPAIQSLVADST-DDSNRGVAFGWLQLTSNIGSLVGGL  148 (522)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lg~~~g~~  148 (522)
                      ++.+..+++.+++...++      +..+++..++.+++.+...++..++..|.. ++++|.+..++...+.++|..+.+.
T Consensus        82 ~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429         82 IGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887666654331      345566677888888999999999999998 5789999999988888888766665


Q ss_pred             HHHhhhcccc--cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh
Q 009914          149 FSVVMAPMTF--MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS  226 (522)
Q Consensus       149 l~~~l~~~~~--~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (522)
                      +...+.....  ....+|+....+.+++.++..+..++..+|+......+.  +++++       ....+..+.+++||.
T Consensus       162 ~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~-------~~~~~~~~~~~~n~~  232 (473)
T PRK10429        162 FTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVS--AEGSH-------LTLKDIVALIYKNDQ  232 (473)
T ss_pred             HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccc--ccccC-------CCHHHHHHHHhcCHH
Confidence            5544332110  111367888777777777666665553333211111000  00001       112233445668888


Q ss_pred             HHHHHHHhhhccchhHH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHH
Q 009914          227 FQIIVAQGVTGSFPWSA-LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS  305 (522)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  305 (522)
                      ++.++...+........ ..+.+.|.+....+....+.+.....++.+++.++.+++.||+|+|+     .+.......+
T Consensus       233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----~~~~~~~~~~  307 (473)
T PRK10429        233 LSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----LWAGASIFPV  307 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHH
Confidence            77776655555443333 33444444543335566677777777888999999999999999984     3332221111


Q ss_pred             HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhh
Q 009914          306 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAP  378 (522)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~  378 (522)
                       +........... .+...+.+.+..++.|++.+.... ...++++|..+       .+..|..+|..+....++.++++
T Consensus       308 -~~~~~~~~~~~~-~~~~~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        308 -LSCGVLLLMGLA-APHNALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             -HHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence             111111111111 123334445556667777776666 67888888865       45567799999999999999999


Q ss_pred             HHHHHHHHHhhCcc
Q 009914          379 PVVGILAQHVYGFK  392 (522)
Q Consensus       379 ~~~g~l~~~~~g~~  392 (522)
                      .+.|++.+. .||.
T Consensus       385 ~i~g~~l~~-~Gy~  397 (473)
T PRK10429        385 FFIGVVLGL-IGYV  397 (473)
T ss_pred             HHHHHHHHH-cCCC
Confidence            999999998 7885

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.95  E-value=2.2e-25  Score=210.36  Aligned_cols=341  Identities=9%  Similarity=0.036  Sum_probs=237.9

Q ss_pred             HhhhhhhHHHHHHHhcCCChhh-hHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009914           21 DESLLPGVYKEVGAALHTDPTG-LGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAI   99 (522)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~s~~~-~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~   99 (522)
                      .+...+...|++.+++|+|.++ .|.+.+++..+++++.+++|.++||+|.|+++.++.+.+++.++++++++++..+.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHH---HHHHHH
Q 009914          100 SRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHI---VGLISV  176 (522)
Q Consensus       100 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~---~~~~~~  176 (522)
                      .|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++++. .     .|||.-+.+   ......
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-----~gWr~y~~Ln~Isl~s~~  193 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-----LGWISYSTLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----cCchhHHHHHHHHHHHHH
Confidence            9999999999999 99999999999999999999999999999999999999944 4     688765443   333334


Q ss_pred             HHHHhhhhccCCCCCC---CCC--------C-CCCccccc--c------hhhhhhHHHHHHhhhhhcchhHHHHHHHhhh
Q 009914          177 VVGTLVRLFANDPHFP---DGG--------T-ANSDQVSS--K------SFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT  236 (522)
Q Consensus       177 i~~~~~~~~~~~~~~~---~~~--------~-~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (522)
                      +..++.+++|..++..   +.+        + +....++.  .      ......+..+.+.+...+++.++...+.-.+
T Consensus       194 ~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~  273 (511)
T TIGR00806       194 FSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF  273 (511)
T ss_pred             HHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            4445555565322210   000        0 00000000  0      0112234566677777788776655444444


Q ss_pred             ccch-hHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914          237 GSFP-WSALSFAAMWLELTGF-SHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL  314 (522)
Q Consensus       237 ~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (522)
                      .... +-+.+|....-++..- .+...|..-++..+.+.+..+..|++-.++.+..    .+.+..++.+.    +.+  
T Consensus       274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~----~l~l~v~s~~~----~gl--  343 (511)
T TIGR00806       274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS----KLLIAVVSAIQ----AGL--  343 (511)
T ss_pred             HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH----HHHHHHHHHHH----HHH--
Confidence            3332 3344454444443222 1225667777777888888888888755443221    11221111111    111  


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhH
Q 009914          315 LVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP  379 (522)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~  379 (522)
                      +......++.|+.++..++++..+.+..+ +...-+++....+..|...|+.+++.-+...+-..
T Consensus       344 l~~m~~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~  407 (511)
T TIGR00806       344 VFWMSQSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITA  407 (511)
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence            11222345666677888888888888877 66777777777777899999998877666555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=3.1e-26  Score=205.50  Aligned_cols=342  Identities=17%  Similarity=0.150  Sum_probs=225.7

Q ss_pred             CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           37 HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQ  116 (522)
Q Consensus        37 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  116 (522)
                      +.+....|.+.+.+.+.+.+.++.+|.++||+|||++++++.+..++..++.+++.|+..++++|++.|+..|-.. ...
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHH
Confidence            3455678999999999999999999999999999999999999999999999999999777777999999977665 667


Q ss_pred             HHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccCCCCchHHHHHHHHHHHH-HHHhhhhccCCCCCCCC
Q 009914          117 SLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-FMGIPGWRISFHIVGLISVV-VGTLVRLFANDPHFPDG  194 (522)
Q Consensus       117 ~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~~~~~gw~~~f~~~~~~~~i-~~~~~~~~~~~~~~~~~  194 (522)
                      ++++|.+++|+|+++++.+...+++|.++||.+|+++.... ..+.+-+-.+-++..++... ..++.++++|.-+.+++
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~  222 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR  222 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence            99999999999999999999999999999999999998721 11222222222222222222 33444555554221111


Q ss_pred             CCCCCcccccchhhhhh-HHHHHHhhhhhcchhHHH-------HHHHhhhccchhHHHHHHHHHH--HHhCCChhHHHHH
Q 009914          195 GTANSDQVSSKSFRSDV-KVLIQEAKSVIKIPSFQI-------IVAQGVTGSFPWSALSFAAMWL--ELTGFSHEKTAFL  264 (522)
Q Consensus       195 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~  264 (522)
                      ++++....+......+. +.........+|++....       +....+.+...+....+.+..+  ..+|+++.+.|.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~v  302 (451)
T KOG2615|consen  223 NDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKV  302 (451)
T ss_pred             cccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheee
Confidence            11000000000000000 001111112233332222       2222222222333334445555  3589999999999


Q ss_pred             HHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCC
Q 009914          265 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA  344 (522)
Q Consensus       265 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (522)
                      .+..++.+.+......+..+|.+...     .......+.+.++..  .++...   .....+.....+..+..+...+ 
T Consensus       303 l~~tGl~m~~~ql~~~~~l~~~~~~~-----~a~l~~~l~~~vP~~--llls~~---~~~~~l~~~s~l~sf~~A~~vt-  371 (451)
T KOG2615|consen  303 LSTTGLLMLVIQLALVPILPRYKGNI-----KAVLLFSLLLIVPAF--LLLSLA---RTPVVLYLGSTLKSFSTASVVT-  371 (451)
T ss_pred             eehhhHHHHHHHHhccccccccccch-----hhHHHHHHHHHHHHH--HHHhcc---ccchhhhHHHHHHHHHHHHhhH-
Confidence            99999988887777776666655221     111112222222222  222211   2223456677777888887778 


Q ss_pred             cchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          345 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ....++....|++.||+.+|+..+.+.++.++||.+.|.+..+.-+
T Consensus       372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~  417 (451)
T KOG2615|consen  372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG  417 (451)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence            8889999999999999999999999999999999999998877433

>PRK09669 putative symporter YagG; Provisional

Probab=99.94  E-value=2e-24  Score=214.67  Aligned_cols=359  Identities=13%  Similarity=0.142  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHHhhh-hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH----hchh-HHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESL-LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR----HNRA-HVIALGAFLW   81 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~grr-~~l~~~~~~~   81 (522)
                      .+...++.+........ ...+..++.+.+|+|+.++|.+.++..+..++..|+.|+++||    +||| +.++.+.+..
T Consensus        11 ~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~   90 (444)
T PRK09669         11 KIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPF   90 (444)
T ss_pred             HHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHH
Confidence            33344444443333333 3455667888999999999999999999999999999999998    6764 5577787777


Q ss_pred             HHHHHHHHhhhh------HHHHHHHHHHHHHHhhhhHHHHHHHHhhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009914           82 AAATFLVAFSST------FAQVAISRALNGIGLALVAPAIQSLVADST-DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        82 ~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      +++.++....|+      +..+++..++.+++.+....+..++.+|+. ++++|.+..++...+..+|..+++.+...+.
T Consensus        91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669         91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766555543      455666777778777788888889999988 5578999999999999998888877655544


Q ss_pred             cccc--cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHH
Q 009914          155 PMTF--MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA  232 (522)
Q Consensus       155 ~~~~--~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (522)
                      ....  ....+|+..+.+.+++.++..+..++..+|+..++++       ++       .+..+..+..+++|.++.++.
T Consensus       171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~-------~~-------~~~~~~~~~~~~n~~~~~l~~  236 (444)
T PRK09669        171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD-------NS-------SSVWKDLKLLLGNSQWRIMFI  236 (444)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc-------CC-------CCHHHHHHHHhCCchHHHHHH
Confidence            3211  1125899999988888777766665544432211110       00       112345566788998887766


Q ss_pred             HhhhccchhHHHH-HHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          233 QGVTGSFPWSALS-FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       233 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      ..++......... ..+.|.+..-.++...+.+.....+..+++.++++++.||+++|+     ....... +...  ..
T Consensus       237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-----~~~~~~~-~~~~--~~  308 (444)
T PRK09669        237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-----AFKWTIV-AFVI--LS  308 (444)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHHH-HHHH--HH
Confidence            5554444333222 233333332223334445555666778888899999999999884     3322211 1111  11


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      ..+...+  +++.+.+.+..++.|++.+...+ ..++++.|..+       ++..|..+|..+....++.++++.+.|.+
T Consensus       309 ~~~~~~~--~~~~~~~~~~~~i~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        309 ALIFFIP--PSNVWLIFALNILFNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HHHHHhC--cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222  23344455666778888888777 78899988875       34467789999999999999999999999


Q ss_pred             HHHhhCcc
Q 009914          385 AQHVYGFK  392 (522)
Q Consensus       385 ~~~~~g~~  392 (522)
                      .+. .||.
T Consensus       386 l~~-~Gy~  392 (444)
T PRK09669        386 LAW-VDYV  392 (444)
T ss_pred             HHH-cCCC
Confidence            998 7985

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=2e-23  Score=200.90  Aligned_cols=353  Identities=19%  Similarity=0.238  Sum_probs=251.0

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc-hhHHHHHHHHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN-RAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g-rr~~l~~~~~~~~~~~~~~~   89 (522)
                      ++.-+++.++....+.|.++.+.++.|.|.+|+|.+.++..+...++++++|.++||.+ +|+.+.+..++.++..+...
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666677888889999999999999999999999999999999999999986 67778777777777777777


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH-HhhhcccccCCCCchHHH
Q 009914           90 FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS-VVMAPMTFMGIPGWRISF  168 (522)
Q Consensus        90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~-~~l~~~~~~~~~gw~~~f  168 (522)
                      ..++++.+++..++..+......|...++..+...  +++.-.|......++|.+++.... ..+....  +..+....+
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~--~~~~~~~~~  162 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL--GISGTSLIF  162 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh--ccccccHHH
Confidence            78899988888888888888889999999988875  356678888888888888886542 2333220  112334566


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchh-HHHHHH
Q 009914          169 HIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW-SALSFA  247 (522)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  247 (522)
                      ++.+...++.....+.+|+.|+.+..+++.+            +...++..+++|+|.+..+++..+...... ...++.
T Consensus       163 ~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~  230 (400)
T PF03825_consen  163 YIAAILSLLLAGFALFLPKTPPKRSAKESVK------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF  230 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccccccCCCcc------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666655566665552211111100            111122345788888877766666555544 455788


Q ss_pred             HHHHHHhC-CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHH
Q 009914          248 AMWLELTG-FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  326 (522)
Q Consensus       248 ~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (522)
                      +.|+++.| .+....+.+.++..+..++.-...+++.+|++.++     .+....  ..  ...=..+..... ++.+..
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-----ll~~a~--~~--~~vR~~l~a~~~-~~~~~~  300 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-----LLLLAL--VA--YAVRWLLYAYFS-DPWPFI  300 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH--HH--HHHHHHHHHHhc-CCcHHH
Confidence            99999988 77888888888989999999999999999999883     222111  11  111111111111 122211


Q ss_pred             ---HHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHH-HHHhchhhHHHHHHHHHhhCc
Q 009914          327 ---HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE-SILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       327 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~i~~~~~g~l~~~~~g~  391 (522)
                         ......+.|+..+.... ....++.+.+|++.|++++++++.+. .+|..+|..++|+++|+ .|.
T Consensus       301 ~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~-~g~  367 (400)
T PF03825_consen  301 VALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA-FGA  367 (400)
T ss_pred             HHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hcc
Confidence               12223568888888888 78899999999999999999998864 68999999999999999 554

>PTZ00207 hypothetical protein; Provisional

Probab=99.94  E-value=4.7e-23  Score=204.51  Aligned_cols=369  Identities=15%  Similarity=0.126  Sum_probs=250.7

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +||..+..........+ ..+.++...|.+.+++|+|..+++++.++. ....+++++.|++.||+|+|+++.++.++++
T Consensus        25 ~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         25 RRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            34554444444443333 334677888999999999999999998874 4455678889999999999999999999999


Q ss_pred             HHHHHHHhh------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           83 AATFLVAFS------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        83 ~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++.++++++      ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.. 
T Consensus       103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-  180 (591)
T PTZ00207        103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-  180 (591)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            999999987      689999999999999999999999999999996 678999999999999999865544444443 


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCC---CCC-CCcccc------------cch--hh----------
Q 009914          157 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG---GTA-NSDQVS------------SKS--FR----------  208 (522)
Q Consensus       157 ~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~~~~------------~~~--~~----------  208 (522)
                           .+|+..|++.+++.++..++.+.+.++|+....   ++. +++++.            +.+  ..          
T Consensus       181 -----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l  255 (591)
T PTZ00207        181 -----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL  255 (591)
T ss_pred             -----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHH
Confidence                 368888999898888888887776666543221   100 000000            000  00          


Q ss_pred             ----------h---h-------------h-----------------------------------------------HHHH
Q 009914          209 ----------S---D-------------V-----------------------------------------------KVLI  215 (522)
Q Consensus       209 ----------~---~-------------~-----------------------------------------------~~~~  215 (522)
                                .   +             +                                               ....
T Consensus       256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (591)
T PTZ00207        256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDV  335 (591)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccc
Confidence                      0   0             0                                               0000


Q ss_pred             --------HHhhhhhcchhHHHHHHHhhhccch-hHHHHHHHHHHHHh-CCChhH--HHHHHHHHHHHHhccchhhhhhh
Q 009914          216 --------QEAKSVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELT-GFSHEK--TAFLMALFVIASSLGGLFGGRMG  283 (522)
Q Consensus       216 --------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~  283 (522)
                              +...+.+++..+|++....++.... ..+.+.+..+.+.+ |.+...  ...+.++.++++.+|++..|.+.
T Consensus       336 ~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~  415 (591)
T PTZ00207        336 DYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE  415 (591)
T ss_pred             cCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence                    0222334455677766666655553 33444566666666 663322  23378889999999999999988


Q ss_pred             hHhhhcCCC--chhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHH
Q 009914          284 DFLSARFPN--SGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTS  361 (522)
Q Consensus       284 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (522)
                      ....+|+..  ..+.+...+..++ .....++.+..+.     -.+.+..++.|++.|...+ +....++|++. ++-|+
T Consensus       416 ~~~~~~~~~~r~prt~~l~~~~~~-~~~~lll~~~~p~-----~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~  487 (591)
T PTZ00207        416 IWSQKRRAEDRVPITIALFIPSVC-IITMLTLFLTLPK-----AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAK  487 (591)
T ss_pred             HHHHhhccccccchhHHHHHHHHH-HHHHHHHHHHCCc-----cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHH
Confidence            444333310  1122222222222 1112222222221     1266888899999999988 89999999999 88999


Q ss_pred             HHHHHHHHHHHHhchh-hHHHHHHHHHh
Q 009914          362 VYAMDRSFESILSSFA-PPVVGILAQHV  388 (522)
Q Consensus       362 ~~g~~~~~~~~~~~i~-~~~~g~l~~~~  388 (522)
                      -+-+.....-+|..+- ..+.|.++|.-
T Consensus       488 ~yN~~~~a~pigs~~~n~~l~G~~Yd~e  515 (591)
T PTZ00207        488 HYNFCFLGSVLSAIFLNRLLYGEWYTQQ  515 (591)
T ss_pred             HhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887665 66788898873

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=2.3e-23  Score=208.53  Aligned_cols=370  Identities=15%  Similarity=0.085  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFLWAA   83 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~   83 (522)
                      +.+..+++..+...+..+.....++ ++.+++|.+.++.+++.+.+........+++|+++|| +|||+.++++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i  100 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI  100 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4456666777777777666555555 5568999999999998888777766667899999999 5999999999999999


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009914           84 ATFLVAFSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSN--RGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG  160 (522)
Q Consensus        84 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~  160 (522)
                      +.+++++++ +.+.+++.|+++|++.|...+...+++.+++|+++  |..++++.+.+.++|..+||.+++++.+.    
T Consensus       101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~----  176 (500)
T PRK09584        101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK----  176 (500)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            999888874 56667788999999999999999999999998653  45688999999999999999999999887    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhh---ccCCCCCCCCCCCCCcccc-------------------cchhhhhh-------
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRL---FANDPHFPDGGTANSDQVS-------------------SKSFRSDV-------  211 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~-------  211 (522)
                       .|||+.|++.++..++..+...+   ..++....+..++.+....                   ........       
T Consensus       177 -~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (500)
T PRK09584        177 -YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALG  255 (500)
T ss_pred             -hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence             89999999987654444332222   2222111110000000000                   00000000       


Q ss_pred             --HHHHH---HhhhhhcchhHHHHHHHhhhccchhHHHHHHHHHHHH---hCCCh------hHHHHHHHHHHHHHhccch
Q 009914          212 --KVLIQ---EAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLEL---TGFSH------EKTAFLMALFVIASSLGGL  277 (522)
Q Consensus       212 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~------~~~~~~~~~~~~~~~~~~~  277 (522)
                        ....+   ..++.-++|.+ ..+...+.....|......+.++..   ...+.      ...+++.++..+..++..+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p  334 (500)
T PRK09584        256 IVVIFGKEAFAMKGAARRKMI-VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSP  334 (500)
T ss_pred             HHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHH
Confidence              00000   01111222222 2222222223334444444444321   11111      1256677777777777777


Q ss_pred             hhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC
Q 009914          278 FGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP--DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP  355 (522)
Q Consensus       278 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  355 (522)
                      +.+++-+|.++|.+...+..+..+....+........ ...  ...-+.++.....++.+++.....| ...+++.+..|
T Consensus       335 ~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~-~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p-~g~s~~~~~aP  412 (500)
T PRK09584        335 ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGA-KFANDAGIVSVNWLIASYGLQSIGELMISG-LGLAMVAQLVP  412 (500)
T ss_pred             HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCc
Confidence            7777777777664432233332222222222211111 110  1112233577888999999999999 89999999999


Q ss_pred             cchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          356 EKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       356 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ++.||+++|+......    +++.+.|.+.+.
T Consensus       413 ~~~rg~~~g~~~l~~a----~g~~~~g~~~~~  440 (500)
T PRK09584        413 QRLMGFIMGSWFLTTA----GAALIAGYVANL  440 (500)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            9999999997665444    445555555543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.4e-22  Score=192.59  Aligned_cols=409  Identities=15%  Similarity=0.172  Sum_probs=287.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH----hchhH-HHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLP-GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR----HNRAH-VIALGAF   79 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~grr~-~l~~~~~   79 (522)
                      +..+...++.+.......... .++-++.+.+|+++..+|.+..+.-+-.++..|+.|.++||    +||+| .++.+.+
T Consensus        12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            334444555555544444444 44456788899999999999999999999999999999996    67655 5888888


Q ss_pred             HHHHHHHHHHhhhh------HHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009914           80 LWAAATFLVAFSST------FAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSNIGSLVGGLFSVV  152 (522)
Q Consensus        80 ~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lg~~~g~~l~~~  152 (522)
                      ..++.+.++..+++      ....++..++.+++.+....+..++.++..+ ++||.+..++.+.+..+|..+...+...
T Consensus        92 p~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p  171 (467)
T COG2211          92 PFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP  171 (467)
T ss_pred             HHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887763      4566788899999999999999999999984 5889999999999999998887777766


Q ss_pred             hhcccccC--CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHH
Q 009914          153 MAPMTFMG--IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII  230 (522)
Q Consensus       153 l~~~~~~~--~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (522)
                      +......+  ..||+..-.+.+++..+..+.+++-.+|+..+....+.   ..+       ++..+.....++|+.+...
T Consensus       172 lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~---~~~-------~~~~~~~~~~~~Nrp~~~~  241 (467)
T COG2211         172 LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT---GVK-------LKLKDSFLLIFKNRPLLLL  241 (467)
T ss_pred             HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc---ccc-------ccHHHHHHHHHccchHHHH
Confidence            66543222  46899999999999888888888866554432221110   000       2233445567789988888


Q ss_pred             HHHhhhccchhHH-HHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 VAQGVTGSFPWSA-LSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      +...++....+.+ .+....|.+ .+|.+.............+.+++.++..++.+|+|+|+     ....... +..  
T Consensus       242 l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-----~~~~~~~-~~~--  313 (467)
T COG2211         242 LLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-----LFLIGLL-LLA--  313 (467)
T ss_pred             HHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-----HHHHHHH-HHH--
Confidence            7766666554433 344556665 47888888888888888888888999999999999994     3333321 111  


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhhHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVV  381 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~~~~  381 (522)
                      +....++..+  .++.++.++..++.+++.+...+ ..++++.|..+       .+..|..+|...++.-+|.+++..+.
T Consensus       314 i~~~~~~f~~--~~~~~l~~~~~~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         314 VGYLLLYFTP--AGSVVLIVVALIIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHhhc--CcchHHHHHHHHHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            1222222222  34455566666788888888888 88999998765       55668899999999999999999999


Q ss_pred             HHHHHHhhCcccCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHH
Q 009914          382 GILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERAR  448 (522)
Q Consensus       382 g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (522)
                      |++.+. .||.+.-           ..|...++..-......+++++..+.+ +..+.++.++++.+
T Consensus       391 g~~L~~-~Gyv~~~-----------~~Q~~~al~gI~~~~~~~Pa~l~l~~~-i~~~~y~L~~~~~~  444 (467)
T COG2211         391 GWILGA-IGYVPNV-----------SAQSASALFGIRFLFIILPALLLLLAA-IIIFFYKLNEKMHK  444 (467)
T ss_pred             HHHHHH-cCCCCCc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCHHHHH
Confidence            999999 8997541           123333333333333444444433333 33346665555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=2.2e-22  Score=198.27  Aligned_cols=358  Identities=15%  Similarity=0.130  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS   91 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   91 (522)
                      ++......+........++.+..++|-+ ....|+.+...++.++..++.|+++|.+|||..++.+.++..+|.++++.+
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            3333444555556677889999999965 678899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHH
Q 009914           92 STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIV  171 (522)
Q Consensus        92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~  171 (522)
                      +|...++.+..+.|+|.|... .....++|..|.|.|....++.....-.....++.++..+...     .+|||.|++.
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-----~~WRw~~~~~  202 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-----SGWRWIFYIF  202 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-----CCcchHHHHH
Confidence            999999999999999977766 4556689999999998887777766655566777777776655     7999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCCCCCCC--Cccc---------------------------ccchhhhhh-----------
Q 009914          172 GLISVVVGTLVRLFANDPHFPDGGTAN--SDQV---------------------------SSKSFRSDV-----------  211 (522)
Q Consensus       172 ~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~---------------------------~~~~~~~~~-----------  211 (522)
                      ++...+..++.+++...|++.+.+.++  .++.                           .....|++.           
T Consensus       203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~  282 (599)
T PF06609_consen  203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV  282 (599)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence            888777766655543333322111110  0000                           000011110           


Q ss_pred             -------HHHHHH------hhhhhcc-hhHHHHHHHhhhcc-chhHHHHHHHHHHH-HhCCCh---hHHHHHHHHHHHHH
Q 009914          212 -------KVLIQE------AKSVIKI-PSFQIIVAQGVTGS-FPWSALSFAAMWLE-LTGFSH---EKTAFLMALFVIAS  272 (522)
Q Consensus       212 -------~~~~~~------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~---~~~~~~~~~~~~~~  272 (522)
                             -|.+..      ..+++++ |.+...++..+... .++....+.|.... .++-++   ...++.....+++.
T Consensus       283 ~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~  362 (599)
T PF06609_consen  283 LLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGS  362 (599)
T ss_pred             HHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHH
Confidence                   011100      1245665 44555444433333 34555556666554 355544   25677778888888


Q ss_pred             hccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhh
Q 009914          273 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAE  352 (522)
Q Consensus       273 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  352 (522)
                      .++.++.+.+..++++.|     ..+......+. .+...+...-+. ....  .....++.|++.++... ......+-
T Consensus       363 ~~g~~i~g~l~~~ir~~K-----w~li~~~~~~t-a~~Gama~~~~~-n~~~--~i~~~~l~g~giG~~~~-~~~~~~ql  432 (599)
T PF06609_consen  363 CAGAVILGLLFSKIRHIK-----WQLIFGSVLMT-AFCGAMAAVRPD-NKNA--AIAFLVLAGFGIGGILV-PAIVIAQL  432 (599)
T ss_pred             HHHHHHHHHHHHHccchh-----HHHHHHHHHHH-HHHHHHHHccCC-Ccch--HHHHHHHHHHhHHHHHH-HHHHeeEe
Confidence            889999999998887553     33322222222 222222222222 2222  33556677777777666 56777777


Q ss_pred             hcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          353 IVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       353 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      .+|++.-|++.|+..+++.+|+++|..+...+..
T Consensus       433 ~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  433 IVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             eeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8899999999999999999999999998876664

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11462 putative transporter; Provisional

Probab=99.93  E-value=2.9e-22  Score=198.81  Aligned_cols=358  Identities=10%  Similarity=0.118  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHHHhhhhh-hHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH----hchhH-HHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLP-GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR----HNRAH-VIALGAFLWA   82 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~grr~-~l~~~~~~~~   82 (522)
                      +...++.+.......... .+..++.+.+|+++..+|.+..+..+..++..|+.|+++||    +|||| .++++.+..+
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            344445544444444444 45567788899999999999999999999999999999996    68765 4777878888


Q ss_pred             HHHHHHHhhhh------HHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914           83 AATFLVAFSST------FAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus        83 ~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      ++.+++...|+      +..+++..++..++..+...+..++.+|..+ ++||++..++...+..+|..+++.+...+..
T Consensus        92 i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~  171 (460)
T PRK11462         92 IVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777665553      4456677778889999999999999999986 6889999999999999998888877665554


Q ss_pred             ccc--cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHH
Q 009914          156 MTF--MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ  233 (522)
Q Consensus       156 ~~~--~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (522)
                      ...  ....+|+....+.+++.+++..+.+...+|+...+.      +  +       ....+..+..++|+.++.++..
T Consensus       172 ~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~------~--~-------~~~~~~l~~~~~Nk~~~~l~~~  236 (460)
T PRK11462        172 LIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP------T--T-------TSMREDLRDIWQNDQWRIVGLL  236 (460)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc------c--C-------CCHHHHHHHHhCChHHHHHHHH
Confidence            311  111468888888887777776665554443221110      0  0       0122345667788888776655


Q ss_pred             hhhccchhHHH-HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 009914          234 GVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  312 (522)
Q Consensus       234 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (522)
                      .+......... .....|.+...-++...+.+.....++.+++.++++++.||+++|+     ....... ....  ..+
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-----~~~~~~~-~~~~--~~~  308 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-----IFWWTNA-LLAV--ISL  308 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHHH-HHHH--HHH
Confidence            44444432222 2233333332223344556677778888999999999999998873     3222111 1111  111


Q ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          313 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      .+...+  ....+...+..++.|++.+...+ ..++++.|..+       .+..|..++..++...++.++++.+.|.+.
T Consensus       309 ~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        309 AMFFVP--MQASITMFVFIFVIGVLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             HHHHhc--hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222  12222233344556666655555 55777777765       455577778888999999999999999999


Q ss_pred             HHhhCccc
Q 009914          386 QHVYGFKP  393 (522)
Q Consensus       386 ~~~~g~~~  393 (522)
                      +. .||..
T Consensus       386 ~~-~Gy~~  392 (460)
T PRK11462        386 AY-GGYDA  392 (460)
T ss_pred             HH-cCCCC
Confidence            98 68863

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=210.22  Aligned_cols=365  Identities=15%  Similarity=0.178  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHH--hhhhhhHHHHHHHhcC-----CCh--hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914           11 VNLAGIMERAD--ESLLPGVYKEVGAALH-----TDP--TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus        11 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g-----~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      ..++.+..+.+  .....+....+.+...     .+.  .+.+++.+...++..+++++.|+++|++|||+.++++.+.+
T Consensus        50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444444543  3455666666666322     222  34599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           82 AAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      .++.+++++++|++.++++|++.|+|.|........+++|..|++.|+...+..+....+|..++..++....+.   . 
T Consensus       130 ~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~---~-  205 (513)
T KOG0254|consen  130 LIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV---Y-  205 (513)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC---C-
Confidence            999999999999999999999999999999999999999999999999999999999999999996555554332   0 


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccc------------ccchhhhhhH-HHHH---------Hhh
Q 009914          162 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQV------------SSKSFRSDVK-VLIQ---------EAK  219 (522)
Q Consensus       162 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~---------~~~  219 (522)
                      .+||..+.+..+.+++..+..++.|++|++..++.+.++.+            +........+ +...         .++
T Consensus       206 ~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (513)
T KOG0254|consen  206 AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWG  285 (513)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHH
Confidence            48999999999999998888777888887765533221110            0000110111 0000         011


Q ss_pred             hhh----cchhHHHHHHHhhhccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCch
Q 009914          220 SVI----KIPSFQIIVAQGVTGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSG  294 (522)
Q Consensus       220 ~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  294 (522)
                      .++    +++.+..+.+..+.... .+....|.+.+++..|.+... .....+.++..+++.++..++.||+|||+    
T Consensus       286 ~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~----  360 (513)
T KOG0254|consen  286 ELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK----  360 (513)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH----
Confidence            112    22223233333333322 234446778888887776543 45555667777788888899999999984    


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHhCCC----C--CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHH
Q 009914          295 RIILAQ-ISSLSAIPLAALLLLVLPD----D--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR  367 (522)
Q Consensus       295 ~~~~~~-~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  367 (522)
                       +++.. ..+..+..+..........    .  .....+...+.+...+..+. .+ +.+.+..|.+|.+.|+++.++..
T Consensus       361 -lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~-g~-v~w~~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  361 -LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW-GP-VPWVIVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             -HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc-cc-chhhhhhccCcHhHHhhhHHHHH
Confidence             33322 2222222222222222111    1  11222222233333333333 33 56789999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHHHH
Q 009914          368 SFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       368 ~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .+..+...+-....-.+.+.
T Consensus       438 ~~n~~~~~~v~~~~~~~~~~  457 (513)
T KOG0254|consen  438 AVNWLWNFLISFFFPFITEA  457 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99988777665555555444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.93  E-value=2.6e-23  Score=206.27  Aligned_cols=371  Identities=15%  Similarity=0.049  Sum_probs=244.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc-----hhHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN-----RAHVIALGAF   79 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g-----rr~~l~~~~~   79 (522)
                      ...+.++...++..++.........|.+.+++|+|+++++...++..++..+ .+++|.++||++     ||+.++++.+
T Consensus        25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHH
Confidence            3455666777888888844455666677778999999999999999999997 556999999997     6777777776


Q ss_pred             HHH-HHHHHHHhhhhHHHH-HHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHH---HHHHHHHHHHHHHHHHHHHHhhh
Q 009914           80 LWA-AATFLVAFSSTFAQV-AISRALNGIGLALVAPAIQSLVADSTDDSNRGVA---FGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        80 ~~~-~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      +.+ ++...++..++.... .+..++.+++.+...++..++..|..+ +++...   .++......+|.++|+.+++.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            663 443444444554444 448899999999999999999999998 544443   34444455689999999999999


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc----ccccchhhhhhHHHHHHhhhhhcchhHHHH
Q 009914          155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD----QVSSKSFRSDVKVLIQEAKSVIKIPSFQII  230 (522)
Q Consensus       155 ~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (522)
                      +.     .+|+..|++.+++.++..+...+++|+++....+..++.    ...........++..++.+..+++|.++..
T Consensus       183 ~~-----~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~  257 (468)
T TIGR00788       183 DK-----TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKP  257 (468)
T ss_pred             Hh-----cCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHH
Confidence            87     899999999988887775544555543211111100000    000000011123334445556777777664


Q ss_pred             HHHhhh-ccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          231 VAQGVT-GSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       231 ~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      ++..++ +.. ......+.-...+.+|+++...|.+....+++.+++..+.+++.+|++.|+     .+.... .+....
T Consensus       258 l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-----~l~~~~-~l~~~~  331 (468)
T TIGR00788       258 LIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-----LFGVTT-LLYTLS  331 (468)
T ss_pred             HHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-----HHHHHH-HHHHHH
Confidence            443333 211 111111100111358999999999999999999999999999988888773     222111 111111


Q ss_pred             HHHHHHH--hCC--CCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          309 LAALLLL--VLP--DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       309 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      .......  .+.  ...+..+......++.+++.+.... ....++++.+|++.+|+.+++.+++.+++..+++.++|.+
T Consensus       332 ~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       332 SLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             HhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000  000  0001122344555667777777777 6799999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 009914          385 AQHVYG  390 (522)
Q Consensus       385 ~~~~~g  390 (522)
                      .+. .|
T Consensus       411 ~~~-~g  415 (468)
T TIGR00788       411 MET-IG  415 (468)
T ss_pred             HHH-cC
Confidence            998 56

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.3e-24  Score=198.27  Aligned_cols=373  Identities=13%  Similarity=0.116  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC--------CChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALH--------TDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALG   77 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~   77 (522)
                      +.+.+..++.+.+.++...++.+.|.+...+.        .++...+.+..+..++.+++++++|++.||+|||+++...
T Consensus        41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~  120 (538)
T KOG0252|consen   41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE  120 (538)
T ss_pred             HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Confidence            45666777889999999999999888776542        3455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 009914           78 AFLWAAATFLVAFSS-------TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS  150 (522)
Q Consensus        78 ~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~  150 (522)
                      ++++.++++++++..       -.+++...|++.|+|.|.-+|...+..+|...+++||...+.+.+..++|.+.|.+++
T Consensus       121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt  200 (538)
T KOG0252|consen  121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA  200 (538)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence            999999999887752       2577889999999999999999999999999999999999999988888888888777


Q ss_pred             Hhhhccc---cc-------CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC----------Cc------cccc
Q 009914          151 VVMAPMT---FM-------GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN----------SD------QVSS  204 (522)
Q Consensus       151 ~~l~~~~---~~-------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~------~~~~  204 (522)
                      ..+....   ..       -+.-||..|.+.++..++.....+..+++++...-..++          ..      +...
T Consensus       201 ~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~  280 (538)
T KOG0252|consen  201 LIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTA  280 (538)
T ss_pred             HHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcc
Confidence            6655321   00       113499999999888888877777777765554110000          00      0000


Q ss_pred             chhhhhhHHHHHHhhhhhcch----hHHHHHHHhhhccchhHHHHHHHHHHHHhCCChhHHHH--------HHHHHHH-H
Q 009914          205 KSFRSDVKVLIQEAKSVIKIP----SFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAF--------LMALFVI-A  271 (522)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~-~  271 (522)
                      .......+.....+...+..+    .+......+..-...|....+...+++..|+.+.....        ...+... +
T Consensus       281 ~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~  360 (538)
T KOG0252|consen  281 ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCS  360 (538)
T ss_pred             ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHc
Confidence            000000011111111111111    11122223333333455555666777766665443322        2223333 3


Q ss_pred             HhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC-CchhHHHHHHHHHHHHHHhccCCCcchhhh
Q 009914          272 SSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD-PSTPVMHGLVLVVTGLFISWNAPATNNPIF  350 (522)
Q Consensus       272 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  350 (522)
                      .+.|..+...++|++||++     ..+..+ .++.   ...+.+..+.. ........++..+..++..+........+.
T Consensus       361 ~vPGyw~tv~~id~iGRk~-----iq~~GF-~~~~---i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivp  431 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKY-----IQLMGF-FIMT---IFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVP  431 (538)
T ss_pred             cCCceeEEEEEeehhhhHH-----HHHhhH-HHHH---HHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEee
Confidence            3447778888999999994     222111 1111   11111122221 111122334444445444444444677888


Q ss_pred             hhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          351 AEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       351 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +|.+|.+.|++..|+....+.+|+.++....+++.++
T Consensus       432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~  468 (538)
T KOG0252|consen  432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH  468 (538)
T ss_pred             hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence            9999999999999999999999999999999999885

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=6.1e-21  Score=187.20  Aligned_cols=340  Identities=19%  Similarity=0.186  Sum_probs=245.5

Q ss_pred             hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH-HHHHHHHHHHHHHHHHhh-h-hHHHHHHHHHHHHHHhhhhHHHHHH
Q 009914           41 TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV-IALGAFLWAAATFLVAFS-S-TFAQVAISRALNGIGLALVAPAIQS  117 (522)
Q Consensus        41 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~-l~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~  117 (522)
                      +..++..++..+..++..|+.|.++|+-++||. +.+...+..+++.++.+. + +++...+..++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778899999999999999999999987766 445555555666666664 3 4555556666667788888999999


Q ss_pred             HHhhccCCCch--------------------------hHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CCCCchHHH
Q 009914          118 LVADSTDDSNR--------------------------GVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM---GIPGWRISF  168 (522)
Q Consensus       118 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~---~~~gw~~~f  168 (522)
                      ++.+..+++++                          ++..+.-.....+|.++..++.-.+......   +..+.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999999999999998888777665433211   124568999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHH
Q 009914          169 HIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFA  247 (522)
Q Consensus       169 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  247 (522)
                      .+.++..++..+..++..++++..+...     ..........++..+..|+..+.|....+++..+++.- ..++..+.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~-----~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~  304 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLP-----SGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFA  304 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCC-----cchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888887777555433321111     01111222335555566666677777776666555444 45666778


Q ss_pred             HHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH-HHhCCCCCchhH
Q 009914          248 AMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL-LLVLPDDPSTPV  325 (522)
Q Consensus       248 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  325 (522)
                      ..|.+ ++|++..+...+..+..+.+++|+++.+++.||+|.|..   +.+...+.....+++..+. +..........+
T Consensus       305 ~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~  381 (477)
T PF11700_consen  305 GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---RTLLISLILWIIIPLYGLFGFWPSFFGLKSPW  381 (477)
T ss_pred             HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHHHHHHHHHHhhhcccCcccHH
Confidence            88886 799999999999999999999999999999999998831   1333222222222222211 111111233444


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhh
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVY  389 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~  389 (522)
                      .+.+..++.|++.+..++ ...++.+++.|+++.+..+|++.......+.+||.+.|.+.+.+.
T Consensus       382 ~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            577788889999999998 899999999999999999999999999999999999999999953

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=6.3e-23  Score=183.02  Aligned_cols=358  Identities=15%  Similarity=0.094  Sum_probs=249.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|........+.....+.....+.+.|.+...+|.+.-|..++......+..+++..+|.++|++|||+...+.....++
T Consensus        76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v  155 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGV  155 (528)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHH
Confidence            45566666677777777777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      ...+.+.++|+..+++.|.+.|+|.|. .|...++-.|..|..+|..-+-.. ..+.+|.+....+.-.....     .|
T Consensus       156 ~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-----~g  228 (528)
T KOG0253|consen  156 FGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-----FG  228 (528)
T ss_pred             HHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----hh
Confidence            999999999999999999999999999 888888889999988888777666 99999999999999888888     89


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc----------------------------ccccchhhh-----h
Q 009914          164 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD----------------------------QVSSKSFRS-----D  210 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~-----~  210 (522)
                      |||..........+.+.+..+++|+|+....+.++++                            ++++.....     .
T Consensus       229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a  308 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSA  308 (528)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcc
Confidence            9999999998888888888889999887544332111                            000000000     0


Q ss_pred             hHHHHHHhhhh----hcchhHHHHHHHhhhccchhHHHHH-----------------HHHHHHH-h--CCChhHHHHHHH
Q 009914          211 VKVLIQEAKSV----IKIPSFQIIVAQGVTGSFPWSALSF-----------------AAMWLEL-T--GFSHEKTAFLMA  266 (522)
Q Consensus       211 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~--g~~~~~~~~~~~  266 (522)
                      -++.......+    ++...+.+....+.-...+|+....                 .|.+++. .  ..+...--.=..
T Consensus       309 ~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdll  388 (528)
T KOG0253|consen  309 AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLL  388 (528)
T ss_pred             ccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHH
Confidence            01111111111    2223332222222211222332222                 2222221 0  111111112233


Q ss_pred             HHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcc
Q 009914          267 LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATN  346 (522)
Q Consensus       267 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  346 (522)
                      +..+..+.|.++.+++.||+|||+.     +..... ++++ +....+.   ....+.  +.+..+..-++....+. +.
T Consensus       389 itslaefPGlLIt~~iverlGRKkT-----Mal~l~-~f~i-flfll~~---c~~rn~--~tvllf~arafisg~fq-va  455 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKT-----MALSLI-LFGI-FLFLLTT---CKTRNA--YTVLLFTARAFISGAFQ-VA  455 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhH-----HHHHHH-HHHH-HHHHHHH---hcCcch--hHHHHHHHHHHHhchhe-EE
Confidence            5578889999999999999999952     221111 1111 1111111   112221  33444555556666666 78


Q ss_pred             hhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHH
Q 009914          347 NPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  381 (522)
Q Consensus       347 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~  381 (522)
                      +.+..|++|+..|+++.|..+.+..+|+++.|.++
T Consensus       456 YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  456 YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            99999999999999999999999999999999988

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.92  E-value=7.3e-23  Score=202.48  Aligned_cols=344  Identities=18%  Similarity=0.260  Sum_probs=256.9

Q ss_pred             hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHH----HhchhHH-HHHHHHHHHHHHHHHHhh-h-------
Q 009914           26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI----RHNRAHV-IALGAFLWAAATFLVAFS-S-------   92 (522)
Q Consensus        26 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~grr~~-l~~~~~~~~~~~~~~~~~-~-------   92 (522)
                      ....+++.+.+|+++..+|++..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... |       
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            45567788889999999999999999999999999999999    7997766 778888888888888766 4       


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC--CCchHHHH
Q 009914           93 TFAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI--PGWRISFH  169 (522)
Q Consensus        93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~--~gw~~~f~  169 (522)
                      ....+++..++..++......+..++..|..+ +++|.+..++...+..+|.++...+.+.+......+.  .+|++..+
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            23345777788899999999999999999997 4789999999999999999877777777664432222  27999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhH-HHHHHH
Q 009914          170 IVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWS-ALSFAA  248 (522)
Q Consensus       170 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  248 (522)
                      +.+++.++..++..+..+|++.+.+++     +++       .+..+..+.++++|.++.++...++....+. .....+
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~~~~~~-----~~~-------~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSVEVTEQ-----EKK-------ISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHHhhhhhheeeecccccccc-----ccc-------cccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            999999888888877666511111110     001       2233455677888888877777666655443 334566


Q ss_pred             HHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 009914          249 MWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMH  327 (522)
Q Consensus       249 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (522)
                      .|.+. .|.+ ...+.+.....++.+++.++.++++||+|+|+.     ......... .......+  .+  ..+.+..
T Consensus       250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-----~~~~~~~~~-~~~~~~~~--~~--~~~~~~~  318 (428)
T PF13347_consen  250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-----YIIGLLLAA-LGFLLLFF--LG--PGSPWLV  318 (428)
T ss_pred             HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-----hhhhHHHHH-HHHHHHHH--HH--hhhHHHH
Confidence            67764 5555 567788888899999999999999999999952     222211111 11111111  11  1445567


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhcC-------cchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcccC
Q 009914          328 GLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  394 (522)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~~~  394 (522)
                      .+...+.|++.+.... ..+++..|..+       ++..|..+|+.+....++..+++.+.|.+.+. .||...
T Consensus       319 ~i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~-~Gy~~~  390 (428)
T PF13347_consen  319 LILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL-VGYDAN  390 (428)
T ss_pred             HHHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH-hCcCCC
Confidence            7888889999988888 88899998886       34579999999999999999999999999988 788644

>PRK09848 glucuronide transporter; Provisional

Probab=99.92  E-value=9.7e-22  Score=195.77  Aligned_cols=357  Identities=9%  Similarity=0.022  Sum_probs=220.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh----chhHH-HHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLL-PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH----NRAHV-IALGAF   79 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~----grr~~-l~~~~~   79 (522)
                      +..+...++.+......... ..+.+++.+.+|+++.++|.+.++..+..++..++.|+++||.    ||||. +.++.+
T Consensus         8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848          8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            33444445555555555444 4455677788899999999999999999999999999999996    76764 466655


Q ss_pred             HHHHHHHHHHhhh-------hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHH-----HHHHHH
Q 009914           80 LWAAATFLVAFSS-------TFAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSN-----IGSLVG  146 (522)
Q Consensus        80 ~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----lg~~~g  146 (522)
                      ...+..++....+       ....+++..++.+++.+...++..++..+..+ +++|.+..++...+.+     ++..++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~  167 (448)
T PRK09848         88 PLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIG  167 (448)
T ss_pred             HHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444432211       22334556677888888888888888777764 4678888777665434     445555


Q ss_pred             HHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchh
Q 009914          147 GLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS  226 (522)
Q Consensus       147 ~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (522)
                      |.++.......   ..+|.....+.+++.++..++.....+|+...+  .  +    +       ....+.++.++++|.
T Consensus       168 p~i~~~~g~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~--~----~-------~~~~~~~~~l~~n~~  229 (448)
T PRK09848        168 PSIKNSSPEEM---VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--V--A----Q-------PSLKISLQTLKRNRP  229 (448)
T ss_pred             HHHHHhCCCch---hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--c--c----C-------CCHHHHHHHHhCCch
Confidence            55554321110   012222222333333333333333222221111  0  0    0       112234566789998


Q ss_pred             HHHHHHHhhhccchh-HHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHH
Q 009914          227 FQIIVAQGVTGSFPW-SALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL  304 (522)
Q Consensus       227 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  304 (522)
                      ++......++....+ ......|.|++ .+|.+....++......++.+++.++.+++.||+++|+     .+..... +
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-----~~~~g~~-~  303 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-----TFLIGAL-L  303 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHHH-H
Confidence            887766655555433 33345666666 47776665555555556677888999999999999873     3332221 1


Q ss_pred             HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc-------hhHHHHHHHHHHHHHHhchh
Q 009914          305 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK-------SRTSVYAMDRSFESILSSFA  377 (522)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~i~  377 (522)
                      ..+  ..+.+.. .. ....+......++.|++.+...+ ...++..|..|.+       .+|..+|+.+....++.+++
T Consensus       304 ~~i--~~~~~~~-~~-~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        304 GTC--GYLLFFW-VS-VWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHH--HHHHHHH-cC-chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            111  1111111 11 22333345556677888877777 7788888887643       46999999999999999999


Q ss_pred             hHHHHHHHHHhhCcc
Q 009914          378 PPVVGILAQHVYGFK  392 (522)
Q Consensus       378 ~~~~g~l~~~~~g~~  392 (522)
                      +.+.|.+.+. .||+
T Consensus       379 ~~i~g~~l~~-~G~~  392 (448)
T PRK09848        379 GSIPAFILGL-SGYI  392 (448)
T ss_pred             HHHHHHHHHH-cCCC
Confidence            9999999998 7886

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.91  E-value=1.1e-21  Score=184.92  Aligned_cols=359  Identities=13%  Similarity=0.151  Sum_probs=236.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      .+++..+.+...++...+...+..+..+...+ ..|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++......
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l   83 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL   83 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence            34556777777888888888887777776665 58999999999999999999999999999999999666544333222


Q ss_pred             --HHHH-HHHHhhh----hH-HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           82 --AAAT-FLVAFSS----TF-AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        82 --~~~~-~~~~~~~----~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                        ..+. +...+.|    |. ...+++-+..|+......|...+++.++.  ++.+.-.|-..++.++|.+++..++|.+
T Consensus        84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L  161 (412)
T PF01306_consen   84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGIL  161 (412)
T ss_dssp             HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhhee
Confidence              2222 2222222    22 22333344455556666777777777765  3446678889999999999999999999


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhccCC-CCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHH
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA  232 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (522)
                      .+.      +-+..|++..+.+++..++.++..++ ++.....+. ++.+++       +...++..+++|+|.+|.+++
T Consensus       162 ~~i------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~l~k~~~fw~~~l  227 (412)
T PF01306_consen  162 FNI------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-LGAKKD-------KVSLKDVLSLFKMRNFWFFVL  227 (412)
T ss_dssp             HHH------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-SSS-------------HHHHHHHTTSHHHHHHHH
T ss_pred             eee------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-cccCCC-------CCcHHHHHHHhcchhHHHHHH
Confidence            874      55788887766666555554444322 221111111 111111       223455677889999998877


Q ss_pred             Hhhhccchh-HHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHH
Q 009914          233 QGVTGSFPW-SALSFAAMWLELT----GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  307 (522)
Q Consensus       233 ~~~~~~~~~-~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  307 (522)
                      ........| ......+.|...+    +.+....|++.+...+..++...+.+++.+|+|.|+     .++.... +.  
T Consensus       228 ~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-----~Lllag~-i~--  299 (412)
T PF01306_consen  228 FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-----LLLLAGV-IM--  299 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHH-HH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-----HHHHHHH-HH--
Confidence            665554444 3334567777543    344567889999999999999999999999999994     2222211 11  


Q ss_pred             HHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHH-HHHHHHHhchhhHHHHHHHH
Q 009914          308 PLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD-RSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~g~l~~  386 (522)
                         .+=...... .++++.+...-.+.++....... ...-++.+.+|++..++.+.+. +...+++..+.++++|.++|
T Consensus       300 ---~iRi~~~~~-~~~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd  374 (412)
T PF01306_consen  300 ---AIRIIGSGF-ATNPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD  374 (412)
T ss_dssp             ---HHHHHHHHT---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHhh-hcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence               111111111 23444577778888888887777 7889999999999999999885 56778999999999999999


Q ss_pred             HhhCc
Q 009914          387 HVYGF  391 (522)
Q Consensus       387 ~~~g~  391 (522)
                      + .|+
T Consensus       375 ~-~G~  378 (412)
T PF01306_consen  375 R-IGF  378 (412)
T ss_dssp             H-HHH
T ss_pred             h-cCc
Confidence            9 565

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.91  E-value=8.9e-21  Score=184.66  Aligned_cols=374  Identities=14%  Similarity=0.095  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHH----HhchhHHHHH-HHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI----RHNRAHVIAL-GAFLWA   82 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~grr~~l~~-~~~~~~   82 (522)
                      ++.++...+-..+.+....+.++.+.+++|.+..+.+++..+..+...+.+|+.|+++|    |+||||.+++ +....+
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            44445555555666677777777788999999999999999999999999999999999    5999998766 466677


Q ss_pred             HHHHHHHhhhhHH-----------------HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHH
Q 009914           83 AATFLVAFSSTFA-----------------QVAISRALNGIGLALVAPAIQSLVADSTDDSNR--GVAFGWLQLTSNIGS  143 (522)
Q Consensus        83 ~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lg~  143 (522)
                      ++.++++++++..                 .++++-.+..++.....++..++++|.+|+++|  +.++++.+...++|.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            7777777766542                 223344455567888888999999999998765  579999999999999


Q ss_pred             HHHHHHHHhhh--cccc------cC--CCCchHHHHHHHHHHHHHHHhhhhccCCCCC-CCCCCC-CC-cccccchhhhh
Q 009914          144 LVGGLFSVVMA--PMTF------MG--IPGWRISFHIVGLISVVVGTLVRLFANDPHF-PDGGTA-NS-DQVSSKSFRSD  210 (522)
Q Consensus       144 ~~g~~l~~~l~--~~~~------~~--~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~  210 (522)
                      ++|+.++++..  ....      .+  -.+.|..|++.+++.++..++..+..+|.+. .+++.+ ++ ++.++......
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~  245 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAF  245 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhh
Confidence            99999998752  1100      00  1267999999988888888777775555322 111110 00 01111111122


Q ss_pred             hHHHHHHhhhhhcchhHHHHHHHhhhccch-hHHHHHHHHHHH-H-hCCChh------H----HHHHHHHHHHHHhccch
Q 009914          211 VKVLIQEAKSVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLE-L-TGFSHE------K----TAFLMALFVIASSLGGL  277 (522)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~g~~~~------~----~~~~~~~~~~~~~~~~~  277 (522)
                      +++.++..+.+  .+.++.++...++.+.. +.+..|.+.|+. + ++.++.      +    ..+......+...+.++
T Consensus       246 ~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~  323 (477)
T TIGR01301       246 FGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSI  323 (477)
T ss_pred             HHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444432  34555565555555553 455566666663 2 443321      1    12333445555566777


Q ss_pred             hhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC---------------CCCchhHHHHHHHHHHHHHHhccC
Q 009914          278 FGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP---------------DDPSTPVMHGLVLVVTGLFISWNA  342 (522)
Q Consensus       278 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~  342 (522)
                      +..++.+|+|+|+    +...... .+.++.+....+....               ......+...+.+...|+..+...
T Consensus       324 ~l~~l~~~~g~~k----~~~~~s~-~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~  398 (477)
T TIGR01301       324 GMEKLCRGWGAGK----RLWGIVN-IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY  398 (477)
T ss_pred             HHHHHHHHhccch----hHHHHHH-HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH
Confidence            7888888887542    1212221 1111122222212110               000112456677788888888777


Q ss_pred             CCcchhhhhhhcCc--chhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          343 PATNNPIFAEIVPE--KSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       343 ~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      . .-++++++..++  +..|..+|+.|.+..+.+.+.....|.+.+. .|
T Consensus       399 s-iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~-~g  446 (477)
T TIGR01301       399 S-IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL-FG  446 (477)
T ss_pred             H-HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            7 779999999984  5569999999999999999999998986666 44

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=3.3e-20  Score=181.49  Aligned_cols=374  Identities=14%  Similarity=0.071  Sum_probs=231.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-chhHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-NRAHVIALGAFLW   81 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~   81 (522)
                      +++.+..++...+...+..+.....+|.+ .+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            34566666777777777777666666654 567899999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009914           82 AAATFLVAFSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDS--NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        82 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~  158 (522)
                      +++.++++..+ +...+++...+.++|.|...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+.  
T Consensus        87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--  164 (493)
T PRK15462         87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE--  164 (493)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            99987776543 2233444445555677777787889999999875  689999999999999999999999999887  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCC-CCCCCCCcccccchh--------------h--hhhHHHH------
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP-DGGTANSDQVSSKSF--------------R--SDVKVLI------  215 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~--~~~~~~~------  215 (522)
                         .||++.|.+.++..++..+......+..... ..+++..++++....              .  ....+..      
T Consensus       165 ---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (493)
T PRK15462        165 ---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALI  241 (493)
T ss_pred             ---hChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               8999999987664443333332222111110 000000000000000              0  0000000      


Q ss_pred             -----------H-Hhhhh--hcchhHHHHHHHhhhccchhHHH----HHHHHHHHH------hCCChhHHHHHHHHHHHH
Q 009914          216 -----------Q-EAKSV--IKIPSFQIIVAQGVTGSFPWSAL----SFAAMWLEL------TGFSHEKTAFLMALFVIA  271 (522)
Q Consensus       216 -----------~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~g~~~~~~~~~~~~~~~~  271 (522)
                                 . ..+..  -.+++...++...+....+|...    +-+..|.++      +|++ -..+++.++..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~  320 (493)
T PRK15462        242 VATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFA  320 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHH
Confidence                       0 00000  01222323322222222233222    234445543      2332 2255777788887


Q ss_pred             HhccchhhhhhhhHhhhc--CC-CchhHHHHHHHHHHHHHHHHHHHHhCCC-CCchhHHHHHHHHHHHHHHhccCCCcch
Q 009914          272 SSLGGLFGGRMGDFLSAR--FP-NSGRIILAQISSLSAIPLAALLLLVLPD-DPSTPVMHGLVLVVTGLFISWNAPATNN  347 (522)
Q Consensus       272 ~~~~~~~~g~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~  347 (522)
                      .++.+++.+++-.|..+|  .+ ...|..+..+...++..+..+....... ...+.++++...++.+++.-...| +..
T Consensus       321 ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sP-vgl  399 (493)
T PRK15462        321 VMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDP-VAM  399 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHCh-HHH
Confidence            777777777776666332  22 2223333333333332222221111111 113445577888889999999999 999


Q ss_pred             hhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          348 PIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       348 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.++++.|++.+|+.+|+....   .+++++.++|.+.+.
T Consensus       400 s~~~~laP~~~~g~~mg~w~l~---~~~~~~~~~g~~~~~  436 (493)
T PRK15462        400 SQITRIEIPGVTGVLTGIYMLL---SGAIANYLAGVIADQ  436 (493)
T ss_pred             HHHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            9999999999999999998432   335666666766665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.90  E-value=2.8e-22  Score=184.94  Aligned_cols=370  Identities=16%  Similarity=0.142  Sum_probs=277.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      ++||.+++.+++..+.+.+.+..++++..+....+| +....-|+..+|++.+....+++-|+.||+|-|...+++..+.
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            578999999999999999999899999888888899 7778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh------hhHH--HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           82 AAATFLVAFS------STFA--QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        82 ~~~~~~~~~~------~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      +++..+-..+      +.++  ....+..+.+.++-+.......+..-|+++++|+.+..+-.++..+|.++|.++...+
T Consensus       120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence            9999887665      2344  6678888888888888877778889999999999999999999999999999999998


Q ss_pred             hccc-ccCCCCchH--HHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHH
Q 009914          154 APMT-FMGIPGWRI--SFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQI  229 (522)
Q Consensus       154 ~~~~-~~~~~gw~~--~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (522)
                      .... ..+...|..  .|+..+++..+..++..+ ..+.|+.++.......+  +       .+..+..++.++++.+.+
T Consensus       200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~--~-------~~f~~si~~~~~n~~F~i  270 (480)
T KOG2563|consen  200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ--D-------ASFPKSIKSCFKNRQFII  270 (480)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh--c-------CcHHHHHHHHHcCccHHH
Confidence            8764 223345654  455455544444444444 33334433332211111  0       235567778899999888


Q ss_pred             HHHHhhhccch-hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHH
Q 009914          230 IVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      ........... ++..+.+..-+...|++...+|++.....+++++++++.|.+.||.++.+     ......... ...
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-----~~~~v~~~~-~~v  344 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-----LTTLVLYLF-ALV  344 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHH-HHH
Confidence            77666555543 34444444444456888888999999999999999999999999987764     222211111 111


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                       ..+.+..........+++.....++|++.....| +...+..|..-|...++..|+.+..+++.+.+-..+.+...+..
T Consensus       345 -~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~P-ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  345 -GTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLP-IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             -HHHHHHHhhccCCceEehhhhHHHHHHhhcCCCC-cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence             1122333333334445567778888888888888 89999999988888999999999999999999999999888873


Q ss_pred             h
Q 009914          389 Y  389 (522)
Q Consensus       389 ~  389 (522)
                      .
T Consensus       423 ~  423 (480)
T KOG2563|consen  423 G  423 (480)
T ss_pred             C
Confidence            3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=198.18  Aligned_cols=332  Identities=17%  Similarity=0.100  Sum_probs=221.0

Q ss_pred             HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHH
Q 009914           34 AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAP  113 (522)
Q Consensus        34 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  113 (522)
                      +.+..+.....+..+++.+|..++++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 009914          114 AIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPD  193 (522)
Q Consensus       114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  193 (522)
                      ....++.|++++++|+.+..+ ......+..+++++++++.       .+||+.+++..+..++..++.++.+|+|++..
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~  262 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------RDWRWLFWIISIPSGLFLLLWFLPPESPRWLL  262 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHccCcChHHHH
Confidence            999999999999999999999 7777778888888888876       48999999999998888777444557787765


Q ss_pred             CCCCCCccccc-----------chhhhhhHHH--HH-----------HhhhhhcchhHHHHHHHhhhccchhHHHHH-HH
Q 009914          194 GGTANSDQVSS-----------KSFRSDVKVL--IQ-----------EAKSVIKIPSFQIIVAQGVTGSFPWSALSF-AA  248 (522)
Q Consensus       194 ~~~~~~~~~~~-----------~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  248 (522)
                      .+++.++..+.           ..........  .+           ....+++.+.+........+....+....+ ++
T Consensus       263 ~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~  342 (521)
T KOG0255|consen  263 SKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS  342 (521)
T ss_pred             HcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            54432211100           0000000000  00           012233443222222222222211122222 22


Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 009914          249 MWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHG  328 (522)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (522)
                      .....+|.+..   ......+.....+....+...|+.|||.      ..........+.+....  ........ ++..
T Consensus       343 ~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~------~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~  410 (521)
T KOG0255|consen  343 LNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRP------PLFLSLFLAGIGLLLFG--WLPDDLGG-WLHW  410 (521)
T ss_pred             hhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHH------HHHHHHHHHHHHHHHHH--Hhhccchh-HHHH
Confidence            22334554443   3334444466677777789999998873      22222222222222222  12211121 1122


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          329 LVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       329 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      ....+..++.+.... ....+..|+.|+..|+.+.+..+....++++++|.+.-....
T Consensus       411 ~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  411 ILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            233333333333334 458899999999999999999999999999999988755544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.90  E-value=3e-28  Score=243.38  Aligned_cols=365  Identities=18%  Similarity=0.155  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHH--HhcCCC---------hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVG--AALHTD---------PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAF   79 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~g~s---------~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~   79 (522)
                      ..++.+..+++....+...+...  ..++.+         ..+.+++.+...++..++++++|.++||+|||+.+.++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            34555778888777766665554  222222         2357899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           80 LWAAATFLVAFSS---TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        80 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      +..++.++.++++   +++.+.++|++.|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999998887665433


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccc----------hhhhhhHH-HH------HHhh
Q 009914          157 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSK----------SFRSDVKV-LI------QEAK  219 (522)
Q Consensus       157 ~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~------~~~~  219 (522)
                        .+..+||..+++.++++++..+...++||+|++...+++.++.++..          ...++..+ ..      ..++
T Consensus       165 --~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (451)
T PF00083_consen  165 --SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR  242 (451)
T ss_pred             --cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence              11246999999999998888888888999998875544332211100          00000000 00      1123


Q ss_pred             hhhcchh----HHH-HHHHhhhccch-hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCc
Q 009914          220 SVIKIPS----FQI-IVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNS  293 (522)
Q Consensus       220 ~~~~~~~----~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  293 (522)
                      .+++++.    +.. +.+..+..... +....+.+.+++..+.+..  -.......+...++.++..++.||+|||+.  
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~--  318 (451)
T PF00083_consen  243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL--  318 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccc--
Confidence            3444422    111 22222221112 2333456666666676665  233334556677788888899999999953  


Q ss_pred             hhHHHHHHHHHHHHHHHHHH--HHhCCCCC--chhHHHHHHHHHHHHHHh-ccCCCcchhhhhhhcCcchhHHHHHHHHH
Q 009914          294 GRIILAQISSLSAIPLAALL--LLVLPDDP--STPVMHGLVLVVTGLFIS-WNAPATNNPIFAEIVPEKSRTSVYAMDRS  368 (522)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  368 (522)
                         .+... ...++....+.  .......+  .... ......+...+.+ ...+ ..+.+..|.+|++.|+++.|+...
T Consensus       319 ---~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~l~~~~~~~g~~~-~~~~~~~ElfPt~~R~~~~~~~~~  392 (451)
T PF00083_consen  319 ---LIIGL-LLMAICSLILGIIFFLGVSSSSWWSIL-SIVFLALFFAFFSLGWGP-LPWIYTAELFPTKVRSTGIGLSYA  392 (451)
T ss_pred             ---ccccc-ccccccccccccccccccccccccccc-cceeeeeccccccccccc-cccccccccccccccccccccccc
Confidence               22211 11111111111  11111111  0111 1122222222222 2223 567888999999999999999999


Q ss_pred             HHHHHhchhhHHHHHHHHH
Q 009914          369 FESILSSFAPPVVGILAQH  387 (522)
Q Consensus       369 ~~~~~~~i~~~~~g~l~~~  387 (522)
                      ++.+++.++|.+...+.+.
T Consensus       393 ~~~i~~~i~~~~~~~~~~~  411 (451)
T PF00083_consen  393 VGRIGGFIIPFLFPYLFNN  411 (451)
T ss_pred             ccccccccccccccccccc
Confidence            9999999999988888777

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-23  Score=180.46  Aligned_cols=365  Identities=15%  Similarity=0.089  Sum_probs=244.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFLWA   82 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~   82 (522)
                      |...+...++..|-+++.+.....+..++..+.+++.++..++.+++.....+..+++|++.|| +|-|..-++-++...
T Consensus        42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            3445566666667778888888888889999999999999999999999999999999999997 677766555555566


Q ss_pred             HHHHHHHh---hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 009914           83 AATFLVAF---SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF-  158 (522)
Q Consensus        83 ~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~-  158 (522)
                      ++.++++.   .+.+|.+..+|++.|+|.-..-++-++++.-|+..|+.+.++|+......+|..+--.+.+++.+... 
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            67666654   57899999999999999888888889999999999999999999999999999877777777665310 


Q ss_pred             -cCCCCc--hHHHHHHHHHHHHHHHhhhh---ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHH
Q 009914          159 -MGIPGW--RISFHIVGLISVVVGTLVRL---FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA  232 (522)
Q Consensus       159 -~~~~gw--~~~f~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (522)
                       .+..|-  -...+..+.......+....   ..++ +.++.-+.++....+.+...       +. .-++ |.+|.+..
T Consensus       202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~-rAerilh~e~g~~Ge~pkLt-------dv-~~f~-ppfw~~~i  271 (459)
T KOG4686|consen  202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDD-RAERILHLEEGFLGEEPKLT-------DV-NTFY-PPFWVLVI  271 (459)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHhhhcCcccCCcccc-------cc-cccC-ccHHHHHH
Confidence             000111  01112222222222222211   1111 11100000000000011110       11 1133 34444444


Q ss_pred             Hhhhcc-chhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHH
Q 009914          233 QGVTGS-FPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  310 (522)
Q Consensus       233 ~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (522)
                      ..+.+. ..+.....-|.+++ ++|+|+..++.+.+.......+.+++.|.++||+|++.      +........  .+.
T Consensus       272 icv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~------~wv~~a~~~--tl~  343 (459)
T KOG4686|consen  272 ICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL------WWVASACIL--TLL  343 (459)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee------hhHHHHHHH--HHH
Confidence            433333 34455566777775 69999999999999999999999999999999999983      222111111  111


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          311 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      .=..+.+..  .+   -...+.++|+......- ..+..+..++|+++.|+++|.++.++++|-++.|.++|.+.|...+
T Consensus       344 ~H~~l~Ft~--ls---Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  344 GHSGLFFTF--LS---PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HhhhHHhhh--cc---HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            111111111  11   23566677777665555 5788889999999999999999999999999999999999998655


Q ss_pred             cc
Q 009914          391 FK  392 (522)
Q Consensus       391 ~~  392 (522)
                      |.
T Consensus       418 y~  419 (459)
T KOG4686|consen  418 YD  419 (459)
T ss_pred             hh
Confidence            64

>TIGR01272 gluP glucose/galactose transporter

Probab=99.85  E-value=4.5e-19  Score=166.28  Aligned_cols=273  Identities=14%  Similarity=0.111  Sum_probs=192.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc----------
Q 009914           90 FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM----------  159 (522)
Q Consensus        90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~----------  159 (522)
                      ...+++.++++-++.|.|.+...+..+.++++..++|++++.+++.+.++++|.+++|.+++.+......          
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999999999999999999999999999999999999999999999988743110          


Q ss_pred             -CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc
Q 009914          160 -GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS  238 (522)
Q Consensus       160 -~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (522)
                       ....|+++|++.+.+.++..++..+.+ -|+.++++.+  +...++.         .+.+..+++|.++...+..+++.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~-~p~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~l~~~~~f~yv  153 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLP-LPELQEADVA--RVSSGDT---------TQKTSAFQFTHLVLGALGIFVYV  153 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCccccc--ccccccc---------cchhhHHhhHHHHHHHHHHHHHH
Confidence             014799999987776666655544432 2221111110  0000000         01123456666776666666665


Q ss_pred             c-hhHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914          239 F-PWSALSFAAMWLEL---TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL  314 (522)
Q Consensus       239 ~-~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (522)
                      . -.+...|.+.|+++   +|+++.+.+...+....+.++|+++.+++.||+++++     .+....  .+..... +..
T Consensus       154 g~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-----~l~~~~--~l~~~~~-~l~  225 (310)
T TIGR01272       154 GAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-----YLAFNA--FLAVLLS-IGA  225 (310)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHHH--HHHHHHH-HHH
Confidence            4 35667899999964   5899999999999999999999999999999999873     332221  1111111 111


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          315 LVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ...   +.. . .....++.|++.+..+| ...+...+..|+ +.+++.++. .+..+|+++.|++.|.+.|. .|.
T Consensus       226 ~~~---~~~-~-~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~  293 (310)
T TIGR01272       226 ALT---HGY-V-AMWFVLALGLFNSIMFP-TIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGI  293 (310)
T ss_pred             HHc---CCH-H-HHHHHHHHHHHHHHHHH-HHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccc
Confidence            111   111 1 23455678899988888 778888887774 466777775 57789999999999999998 454

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.84  E-value=2.4e-18  Score=158.45  Aligned_cols=329  Identities=14%  Similarity=0.140  Sum_probs=245.1

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH-HHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHhhhhHHHH
Q 009914           40 PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV-IALGAFLWAAATFLVAFSST---FAQVAISRALNGIGLALVAPAI  115 (522)
Q Consensus        40 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~-l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~  115 (522)
                      .+..|...++..+..++.+|+.|.++|+.|+||. +-+...+..++.+++.++++   ++..++..++..++.....+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3457888899999999999999999999996554 66666666777777777754   4455667888889999999999


Q ss_pred             HHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh--c-----------ccccCCCCchHHHHHHHHHHHHHHHhh
Q 009914          116 QSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA--P-----------MTFMGIPGWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       116 ~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~--~-----------~~~~~~~gw~~~f~~~~~~~~i~~~~~  182 (522)
                      .+++.+..++++-++..++-.....+|..+.-+..-...  .           .+..+...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            999999999988888877777777777766554432111  1           011123567899999999988888888


Q ss_pred             hhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHH-HhCCChhH
Q 009914          183 RLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLE-LTGFSHEK  260 (522)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~  260 (522)
                      ++..++++...       ....+......++.....++..+++.+..+++..+++.- ..+...+...|.. ++|++..+
T Consensus       217 ~~~v~~~~~~~-------~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~  289 (438)
T COG2270         217 ILNVHDAEKIS-------SPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE  289 (438)
T ss_pred             Hhccccccccc-------ccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH
Confidence            87766654321       111233344557777778888888877777666555544 5677778888887 79999999


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhc
Q 009914          261 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISW  340 (522)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  340 (522)
                      ...+.....+.+++|+++.|++.||++.|+     .+...+......++..  +.  .   .....+.++..+.|++.+.
T Consensus       290 lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~-----vl~~~lvi~~~~~~~~--~~--~---~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         290 LLLIGIALSVVAALGAIIAGFLDERFGSKP-----VLMIGLVILSIAALYL--IF--L---EGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCce-----eehHHHHHHHHHHHHH--HH--c---cccHHHHHHHHHHHHhcch
Confidence            999999999999999999999999999984     2232222222221111  11  1   1123355666788888888


Q ss_pred             cCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          341 NAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      .+. ...++..+.+|+++.++.+|+++..+...+.+||.+.+.+.+.+
T Consensus       358 ~qA-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         358 AQA-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             HHH-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence            888 88999999999999999999999999999999999999999984

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.83  E-value=2e-17  Score=153.07  Aligned_cols=333  Identities=15%  Similarity=0.108  Sum_probs=230.8

Q ss_pred             HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc-----hhHH-HHHHHHHHHHHHHHHHhh-----h-------
Q 009914           31 EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN-----RAHV-IALGAFLWAAATFLVAFS-----S-------   92 (522)
Q Consensus        31 ~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g-----rr~~-l~~~~~~~~~~~~~~~~~-----~-------   92 (522)
                      .+..|++++..-.+.+.+...+..- ..+.+|+.+|+.+     ||.. +..|.++.+.+..+.+++     .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            4667899999999999999888766 6999999999988     7765 555666666665555443     2       


Q ss_pred             hH--H--HHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCch---
Q 009914           93 TF--A--QVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWR---  165 (522)
Q Consensus        93 ~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~---  165 (522)
                      +.  +  ...+.-.+.|+|.+....+..+++.|..|+|+|+++.++.....-+|.+++..+.+.+.+.     +.-.   
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-----~s~~rL~  158 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-----FSPERLI  158 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-----cCHHHHH
Confidence            11  1  2345677889999999999999999999999999999999999999999999999988865     3322   


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHH-
Q 009914          166 ISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-  244 (522)
Q Consensus       166 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  244 (522)
                      .++...+++.++..++..+-. |++..+...  ..++++       ....+.+++++.+|....+....+.....+... 
T Consensus       159 ~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~--~~~~~~-------~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD  228 (403)
T PF03209_consen  159 QVIQGVALIALLLNLIALWGQ-EPRRSRRAA--AAERPR-------PPFREAWRQVWASPQARRFFVFLFLGTLAFFMQD  228 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-ccCCccccc--CCCCCC-------ccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhH
Confidence            233333333333333333333 333222221  111111       222234455556666666665555555544433 


Q ss_pred             HHHHHHH-HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          245 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       245 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      ..+-.|- +.+|++..+...+....+.+.+++..+.|++..|...++    +.... .+..+...+..+.+..   ...+
T Consensus       229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~----~~a~~-G~~~~~~~f~lii~a~---~~~~  300 (403)
T PF03209_consen  229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK----RTAAL-GCLLGALAFALIILAG---PLGS  300 (403)
T ss_pred             HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch----HHHHH-HHHHHHHHHHHHHHHH---hccc
Confidence            3455555 459999999999999999999999999998877432221    22221 1222222222222222   1233


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      .+.+....+++|++.+.... ...+.+.+..++++.|..+|.....+.+...++..++|.+.|..
T Consensus       301 ~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  301 PWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             chHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55577888999999998888 78889999999999999999999999999999999999999984

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.81  E-value=8.6e-17  Score=151.74  Aligned_cols=372  Identities=17%  Similarity=0.117  Sum_probs=246.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHhcC----CChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLL-PGVYKEVGAALH----TDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALG   77 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g----~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~   77 (522)
                      +.+.+..+...-+...+.++.. .++.-++..+++    .++++..-+.+++....-+...++|+++|| +|+|+.+..|
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG   98 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG   98 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            3466777888888888877654 455556667777    999999888888888888899999999999 5999999999


Q ss_pred             HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           78 AFLWAAATFLVAFSS--TFAQVAISRALNGIGLALVAPAIQSLVADSTDDS--NRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        78 ~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      .+++.+|.++.+...  +...++++..+.++|.|..-+...+++.|.+|++  +|...++++.++.++|+.++|.+.+++
T Consensus        99 ail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~  178 (498)
T COG3104          99 AILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL  178 (498)
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence            999999999999884  7889999999999999999999999999999764  478899999999999999999999999


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC--cccccchhh------------------hhhH-
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANS--DQVSSKSFR------------------SDVK-  212 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~-  212 (522)
                      .+.     +||...|-+.++-..+..+..+..++.-......++..  ........+                  +... 
T Consensus       179 ~~~-----~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  253 (498)
T COG3104         179 AIN-----YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSG  253 (498)
T ss_pred             HHh-----hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998     99999999998877766666555543211111111000  000000000                  0000 


Q ss_pred             ---------------HHHHHhhhhhcchhHHHHHHHhhhccchhHHH----HHHHHHHHH------hCCChhHHHHHHHH
Q 009914          213 ---------------VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL----SFAAMWLEL------TGFSHEKTAFLMAL  267 (522)
Q Consensus       213 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~g~~~~~~~~~~~~  267 (522)
                                     +..+..+..-.+++.+..+..++....+|...    +-+..|.++      +|++ -..+++.++
T Consensus       254 ~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQsl  332 (498)
T COG3104         254 VLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSL  332 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhh
Confidence                           00000000011122222322222222233222    233444422      2222 234577778


Q ss_pred             HHHHHhccchhhhhhhhHhhhcC--C-CchhHHHHHHHHHHHHHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHHhccC
Q 009914          268 FVIASSLGGLFGGRMGDFLSARF--P-NSGRIILAQISSLSAIPLAALLLLVLP--DDPSTPVMHGLVLVVTGLFISWNA  342 (522)
Q Consensus       268 ~~~~~~~~~~~~g~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~  342 (522)
                      ..+.-++.+++..++..|.++++  + ...+.-+......++..+.........  ....+.++.+...++.+++.-+..
T Consensus       333 Np~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iS  412 (498)
T COG3104         333 NPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFIS  412 (498)
T ss_pred             CHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhC
Confidence            78888888888888887754442  2 222333333322332222222211122  333455667888999999999999


Q ss_pred             CCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHH
Q 009914          343 PATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  382 (522)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g  382 (522)
                      | +..+++.+..|+...+..+|+.......+..++..+.+
T Consensus       413 p-vGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         413 P-VGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             H-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            9 99999999999998888888887776666666665555

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=8.2e-18  Score=166.93  Aligned_cols=284  Identities=19%  Similarity=0.278  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      ..+.++++..+...+....+...+..+.+.++++.++.|++.+.+-++..+...+..++.-|..|-+++-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45666777788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh--------------------h--------------------------------hHHHHHHHHHHHHHHhhhhHH
Q 009914           86 FLVAFS--------------------S--------------------------------TFAQVAISRALNGIGLALVAP  113 (522)
Q Consensus        86 ~~~~~~--------------------~--------------------------------~~~~l~~~r~l~G~~~~~~~~  113 (522)
                      +++++-                    +                                -+..++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            998762                    0                                022567789999999999999


Q ss_pred             HHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC--------------CCCchHHHHHHHHHHHHHH
Q 009914          114 AIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG--------------IPGWRISFHIVGLISVVVG  179 (522)
Q Consensus       114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~--------------~~gw~~~f~~~~~~~~i~~  179 (522)
                      ...+++-|...+++-...+|++.....+|.++|-++++++......-              ...|..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987532100              1248888999999999999


Q ss_pred             HhhhhccCCCCCCCC-----CCC--CCc---ccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccch-hHHHHHHH
Q 009914          180 TLVRLFANDPHFPDG-----GTA--NSD---QVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP-WSALSFAA  248 (522)
Q Consensus       180 ~~~~~~~~~~~~~~~-----~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  248 (522)
                      +..+++|++.+...+     +.+  +++   .+......+++++..+..+++++||.+...++..++.... .++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            999999987543321     000  011   1223334456778888899999999999888877777764 57778999


Q ss_pred             HHHH-HhCCChhHHHHHHHHHHH-HHhccchhhhhhhhHhhhc
Q 009914          249 MWLE-LTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSAR  289 (522)
Q Consensus       249 ~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~~~~~  289 (522)
                      -|++ ++|.++..+..+.....+ +..+|.+++|++.+|+..+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            9997 699999999999977666 5557888999999998665

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.77  E-value=1.8e-20  Score=186.51  Aligned_cols=377  Identities=19%  Similarity=0.278  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      +..+++..+............+..+.+.|+++.++.|++.+.+-++..+..++..++.+|..|-|++-+|.++.+++.++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            34455556666777778888999999999999999999999999999999999999999988889999999999999998


Q ss_pred             HHhhh--------------------------------------------------hHHHHHHHHHHHHHHhhhhHHHHHH
Q 009914           88 VAFSS--------------------------------------------------TFAQVAISRALNGIGLALVAPAIQS  117 (522)
Q Consensus        88 ~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~  117 (522)
                      +++-+                                                  -+..++++.++.|+|.+..++...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            76520                                                  0244678999999999999999999


Q ss_pred             HHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc----ccC-------------CCCchHHHHHHHHHHHHHHH
Q 009914          118 LVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT----FMG-------------IPGWRISFHIVGLISVVVGT  180 (522)
Q Consensus       118 ~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~----~~~-------------~~gw~~~f~~~~~~~~i~~~  180 (522)
                      ++-|..++++-+.++|+..+...+|.++|-++++.+....    ..+             ...|..-|++.+++.++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877431    000             12488889999999999988


Q ss_pred             hhhhccCCCCCCC-C--CC-----CCCcc--c--cc----chhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHH
Q 009914          181 LVRLFANDPHFPD-G--GT-----ANSDQ--V--SS----KSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSA  243 (522)
Q Consensus       181 ~~~~~~~~~~~~~-~--~~-----~~~~~--~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  243 (522)
                      ..+.+|++-+... .  .+     +.++.  +  .+    +......++..+..+++++||.+....+....... ..+.
T Consensus       245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~  324 (539)
T PF03137_consen  245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF  324 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            8888887633220 0  00     00000  0  00    11123456777888899999999888777776666 4577


Q ss_pred             HHHHHHHHH-HhCCChhHHHHHHHHHHH-HHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHH-HHHHHHhCC--
Q 009914          244 LSFAAMWLE-LTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL-AALLLLVLP--  318 (522)
Q Consensus       244 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  318 (522)
                      .+|.|-|++ +++.++.+++.+.....+ +.++|.+++|++.+|++-+.....+....  ..++.+.. ...+++.-+  
T Consensus       325 ~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v--~~~v~~~~~~~~~~~~C~~~  402 (539)
T PF03137_consen  325 ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV--VSIVSVILYSPLFFLGCPNP  402 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH--HHHHHHHHHHHHHeecCCCC
Confidence            789999997 699999999988877655 67789999999999987653221111111  11111111 111111100  


Q ss_pred             --------C-------C----------------------------CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcC
Q 009914          319 --------D-------D----------------------------PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP  355 (522)
Q Consensus       319 --------~-------~----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  355 (522)
                              .       .                            ....+.+.+..++..+..+.... .......+.+|
T Consensus       403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~-p~~~i~LR~V~  481 (539)
T PF03137_consen  403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV-PSTLITLRCVP  481 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc-chheeeeccCC
Confidence                    0       0                            00112233333333344444444 45667778999


Q ss_pred             cchhHHHHHHHHHHHHHH-hchhhHHHHHHHHH
Q 009914          356 EKSRTSVYAMDRSFESIL-SSFAPPVVGILAQH  387 (522)
Q Consensus       356 ~~~~~~~~g~~~~~~~~~-~~i~~~~~g~l~~~  387 (522)
                      +++|+.+.|+...+..+. ..-+|.+.|.+.|.
T Consensus       482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------
T ss_pred             hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            999999999999887754 57799999999998

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.76  E-value=2.1e-17  Score=157.75  Aligned_cols=375  Identities=12%  Similarity=0.090  Sum_probs=233.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh--cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhch-hHHHHHHH
Q 009914            2 KQETVTLVLVNLAGIMERADESLLPGVYKEVGAA--LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNR-AHVIALGA   78 (522)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~gr-r~~l~~~~   78 (522)
                      +.+|+.+++..+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++++.+|++..|.+. |+.++.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4578999999999999999988877666555565  77888899999999999999999999999999986 88899999


Q ss_pred             HHHHHHHHHHH-hh---h-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           79 FLWAAATFLVA-FS---S-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        79 ~~~~~~~~~~~-~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      ++..++.++.. +.   + ..+.++++|++.|+|.+... ...+++++....++|.++++....+..+|.++||.++..+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            99999999883 32   2 56888999999999966554 6679999988889999999999999999999999998887


Q ss_pred             hccccc--------CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcch
Q 009914          154 APMTFM--------GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIP  225 (522)
Q Consensus       154 ~~~~~~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (522)
                      ......        ...-+..+-|+.+++.++..++..+..+|+.....+++.+++++.+..    ++..+..+  +..+
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~d~~  262 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD----IEKVKKPK--LDWV  262 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc----hhhhccCC--hhHH
Confidence            643211        111245677788888888888777766665444332211111101000    00000000  0111


Q ss_pred             hHHHHHHHhhhccc-hhHHHHHHHHH-HHHhCCChhHHHH----HHHHHHHHHhccchhhhhhh-hHhhhcCCCchhHHH
Q 009914          226 SFQIIVAQGVTGSF-PWSALSFAAMW-LELTGFSHEKTAF----LMALFVIASSLGGLFGGRMG-DFLSARFPNSGRIIL  298 (522)
Q Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~g~l~-~~~~~~~~~~~~~~~  298 (522)
                      ..+.++...+.... .....+..+.+ ...++++..++-.    +.++.++..+.-.+...... .++.+|.     .+.
T Consensus       263 ~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~-----~~~  337 (488)
T KOG2325|consen  263 AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR-----IIL  337 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce-----eee
Confidence            11122222222222 22223333333 3346665554433    33333333333333333222 1212221     111


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCC---------------------------chhHHHHHHHHHHHHHHhccCCCcchhhhh
Q 009914          299 AQISSLSAIPLAALLLLVLPDDP---------------------------STPVMHGLVLVVTGLFISWNAPATNNPIFA  351 (522)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  351 (522)
                      ...  +..+....+....+....                           +.+..+....+.+|.+.-.... ...++.+
T Consensus       338 ~g~--l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~-~~~tlyS  414 (488)
T KOG2325|consen  338 LGF--LIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFIST-ALDTLYS  414 (488)
T ss_pred             ehH--HHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccc-hHHHHHH
Confidence            111  111111111111111100                           0011122234445555555555 6788999


Q ss_pred             hhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          352 EIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      +...+.+++++.|++......+..++|.+...+... .|++
T Consensus       415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~  454 (488)
T KOG2325|consen  415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPR  454 (488)
T ss_pred             HHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCcc
Confidence            999999999999999999999999999999888888 6764

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.72  E-value=1e-15  Score=150.07  Aligned_cols=350  Identities=19%  Similarity=0.164  Sum_probs=226.8

Q ss_pred             hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc-----hhHHHHHHHHHHHHHHHHHHhhh----hHH
Q 009914           25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN-----RAHVIALGAFLWAAATFLVAFSS----TFA   95 (522)
Q Consensus        25 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g-----rr~~l~~~~~~~~~~~~~~~~~~----~~~   95 (522)
                      .....|.+.+++|+++++...+.++..+...+ .++.|.++|-+.     ||+-++++.++.+++.+.++..+    +..
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            45667889999999999999999999998884 899999999863     45557778877766666666543    466


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhhccC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHH
Q 009914           96 QVAISRALNGIGLALVAPAIQSLVADSTD--DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGL  173 (522)
Q Consensus        96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~  173 (522)
                      ...+.-++..+|.+.....+.+++.|...  ++.|+...+.......+|.+++..++|.+.+.     .+++..|.+.++
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-----~~~~~~f~i~~~  162 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-----FGPQGVFLISAA  162 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----CCCeEEehHHHH
Confidence            66777788899999999999999999884  33478888999999999999999999999988     889999999988


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCC-CcccccchhhhhhHHHHHHhhhhhcchhHHHHHH-HhhhccchhHHHHHHHHHH
Q 009914          174 ISVVVGTLVRLFANDPHFPDGGTAN-SDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA-QGVTGSFPWSALSFAAMWL  251 (522)
Q Consensus       174 ~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  251 (522)
                      +.++..+...++.+|.+..+..+.. ..++.........++..+..++.++.+.++.... ..++.........-...|.
T Consensus       163 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~  242 (433)
T PF03092_consen  163 LPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYF  242 (433)
T ss_pred             HHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEE
Confidence            8887777777766652111111100 0111111122224666677777777777765544 2222221111000001111


Q ss_pred             --HHhC---CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC-----C-C
Q 009914          252 --ELTG---FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP-----D-D  320 (522)
Q Consensus       252 --~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~  320 (522)
                        ...+   +++...+.+..+..++.++|..+..+...+..-|      .+......+..+ ....-+....     . .
T Consensus       243 ~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R------~~~~~t~~~~~~-~~l~~~~lv~~~n~~~Gi  315 (433)
T PF03092_consen  243 QTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWR------RIFVVTTLVSVL-ASLFDLLLVTRWNLDLGI  315 (433)
T ss_pred             EeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHH-HhcccEEEEEEEeeeeCc
Confidence              2345   8888888888777777777777766555444444      222211111111 1110000000     0 1


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ++.+. ...--++..+....... ....++++++|+...|+.+++..++.+++..++..++..+.+. ++
T Consensus       316 ~d~~f-~lgd~~l~~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-~~  382 (433)
T PF03092_consen  316 PDQWF-ALGDTILEEVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-FG  382 (433)
T ss_pred             CCeEE-EEEhHHHHHHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            11111 11222333333333333 4678899999999999999999999999999999999999888 45

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.68  E-value=6.1e-15  Score=143.23  Aligned_cols=359  Identities=16%  Similarity=0.154  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChh-hhHHHHHHH----HHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPT-GLGSLTLFR----SIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~s~~----~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      .....+-.+..++.........+......+.... ..+......    .+...+.++..|.++||+|||..+....+...
T Consensus        24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~  103 (463)
T KOG2816|consen   24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI  103 (463)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence            3444455555555555555666666655554332 233333333    67888899999999999999999999999888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHH--HhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGI--GLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMG  160 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~  160 (522)
                      +..+...+.. +|.++    +.++  +.+.......++++|....++|...+++.......+..++|.+++.+...    
T Consensus       104 l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----  174 (463)
T KOG2816|consen  104 LPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----  174 (463)
T ss_pred             HhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----
Confidence            8888777765 33333    3333  23555667789999999999999999999999999999999999999988    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC-CC-cccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA-NS-DQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS  238 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (522)
                       .|.-.+|.+..+..++..+...+..+|+..++.+.. .. +............+..+.....-.+|..+.++...+...
T Consensus       175 -~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~  253 (463)
T KOG2816|consen  175 -LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSS  253 (463)
T ss_pred             -cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHH
Confidence             899999999999999888888887766554443331 00 001111111122233333333333344443333222222


Q ss_pred             c-hhHHHH-HHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhh-hhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914          239 F-PWSALS-FAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGG-RMGDFLSARFPNSGRIILAQISSLSAIPLAALLL  314 (522)
Q Consensus       239 ~-~~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (522)
                      . ...... ..+.|++ .++++..+.+.+.+..+....++.++.. .+...++.++     .    +..++..-.....+
T Consensus       254 ~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~-----~----i~lGl~~~~~~~~~  324 (463)
T KOG2816|consen  254 LPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR-----L----ISLGLLSEFLQLLL  324 (463)
T ss_pred             HHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----H----hhHHHHHHHHHHHH
Confidence            1 111111 2345555 5899999999999998888888887666 6677777773     1    11122222222222


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          315 LVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ..+....   |..+.. ...........+ ...+.++..++++++|+++++...+..+...++|.+.+.++..+..
T Consensus       325 ~af~~~~---w~~~~~-~v~~~~~~~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~  395 (463)
T KOG2816|consen  325 FAFATET---WMMFAA-GVVVALAGIVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLD  395 (463)
T ss_pred             HHHhccc---hhhhHH-HHHHHhhcchhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            2222222   212222 223333444555 6889999999999999999999999999999999999999877543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.62  E-value=7.6e-15  Score=121.23  Aligned_cols=136  Identities=27%  Similarity=0.433  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC
Q 009914           47 TLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDS  126 (522)
Q Consensus        47 ~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  126 (522)
                      .+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34566788899999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          127 NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       127 ~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      +|++.+++.+....+|..+++.+.+.+.+.     .+|++.|++.++..++..+..+++.+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF-----LGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-----cchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999877     79999999988887777777666543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.62  E-value=3.4e-14  Score=139.74  Aligned_cols=180  Identities=16%  Similarity=0.200  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCCh--------hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDP--------TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      +.+..++............+.+.++.|.++        ...+.+.++..+...++.++.|+++||+|+|+++.++.++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWA  292 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            333344433333344455566666666543        567999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhh----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHH-HHHHHHHHHHHHHHHhhhccc
Q 009914           83 AATFLVAFSS----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQ-LTSNIGSLVGGLFSVVMAPMT  157 (522)
Q Consensus        83 ~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lg~~~g~~l~~~l~~~~  157 (522)
                      ++..+.....    +++.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|.++||+++|.+.+..
T Consensus       293 v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~  372 (418)
T TIGR00889       293 LRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM  372 (418)
T ss_pred             HHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            8877666632    24567788999999999999999999999999999999999997 678999999999999998762


Q ss_pred             c-cCCCCchHHHHHHHHHHHHHHHhhhhccCCCC
Q 009914          158 F-MGIPGWRISFHIVGLISVVVGTLVRLFANDPH  190 (522)
Q Consensus       158 ~-~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  190 (522)
                      . .+..||+..|.+.+++.++..++.+++.+++.
T Consensus       373 g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       373 FAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            1 11146999999999988888888877666553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.61  E-value=1.2e-12  Score=119.58  Aligned_cols=256  Identities=14%  Similarity=0.113  Sum_probs=169.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhh
Q 009914           13 LAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSS   92 (522)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~   92 (522)
                      ..+.+........+|..-.+-+++|.+..|++.+..+.....++..++.|.++||+|||+..++-+++.+++++. -..+
T Consensus        41 ~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~  119 (354)
T PF05631_consen   41 LVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSS  119 (354)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-Hhcc
Confidence            334444555566666666666789999999999999999999999999999999999999999999999988864 4568


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHhhcc-----CCCchhHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCchH
Q 009914           93 TFAQVAISRALNGIGLALVAPAIQSLVADST-----DDSNRGVAFGWLQ-LTSNIGSLVGGLFSVVMAPMTFMGIPGWRI  166 (522)
Q Consensus        93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~  166 (522)
                      +++.++++|++.|++.+..+.+-.++...-.     |++..+..++... ..+++-.+++.+++.++.+..   ..|-..
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~---~~g~va  196 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF---GFGPVA  196 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh---CCCCcc
Confidence            9999999999999999999998888764322     2222333333333 234444556666666666541   024478


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHH-HHHhhhccchhHHH-
Q 009914          167 SFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGVTGSFPWSAL-  244 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-  244 (522)
                      +|....++.++..++....-+|......++        .+..   +...+..+.++++|.++.+ ++..++-...|.+. 
T Consensus       197 PF~~a~~~l~~~~~~I~~~W~ENyg~~~~~--------~~~~---~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVf  265 (354)
T PF05631_consen  197 PFDAAIVLLAVAAVLILKTWPENYGDTSSS--------SSLS---GSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVF  265 (354)
T ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCcccc--------cchH---HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhee
Confidence            898888877777776655333321111110        0111   2233445566677776665 44444444444332 


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhH
Q 009914          245 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF  285 (522)
Q Consensus       245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  285 (522)
                      .|.|..-.  +-...-.|++++.+.+..++|+.+..++..+
T Consensus       266 lWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  266 LWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45665541  1112337899999999999999888766554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.59  E-value=1.6e-13  Score=141.25  Aligned_cols=138  Identities=14%  Similarity=0.135  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 009914           44 GSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADST  123 (522)
Q Consensus        44 g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  123 (522)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.+++++.++...+++.+++.|++.+..++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677888999999999999999999999999999999999999988888888889999988888999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          124 DDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       124 ~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      |.++|++++|+..+...+|.++||++++.+...      +...+|++.+++.++.+++.+++|+
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~------~~~~pf~i~a~~lll~~ll~~~LPE  735 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI------TKAAPILFASAALACGGLLALKLPD  735 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999988764      4677888888887777777766653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=6.7e-13  Score=133.71  Aligned_cols=171  Identities=11%  Similarity=-0.019  Sum_probs=128.5

Q ss_pred             HHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH-H--HhhhhH
Q 009914           19 RADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL-V--AFSSTF   94 (522)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~-~--~~~~~~   94 (522)
                      ....+.....+|.+. +.+|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. .  ..+++.
T Consensus       263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (490)
T PRK10642        263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVI  342 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            334444455566654 678999888888888888999999999999999999999988877654433322 2  223457


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHH
Q 009914           95 AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLI  174 (522)
Q Consensus        95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~  174 (522)
                      ..+++++++.|++.+........++.+.+|++.|++++++......++..++|.+.+++.+..    .+|+.++++..+.
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----~~~~~~~~~~~~~  418 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----QNLMMPAYYLMVV  418 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHH
Confidence            778888999998877777778888999999999999999865556666788888888887641    3578777777777


Q ss_pred             HHHHHHhhhhccCCCCCCC
Q 009914          175 SVVVGTLVRLFANDPHFPD  193 (522)
Q Consensus       175 ~~i~~~~~~~~~~~~~~~~  193 (522)
                      +++..+..+++||+|++..
T Consensus       419 ~~i~~~~~~~~pes~~~~~  437 (490)
T PRK10642        419 AVIGLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHhccccCCCC
Confidence            7777777677777776544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=4.4e-13  Score=131.79  Aligned_cols=162  Identities=17%  Similarity=0.143  Sum_probs=135.6

Q ss_pred             hhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009914           22 ESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISR  101 (522)
Q Consensus        22 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  101 (522)
                      .......+|.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T PRK05122        232 FGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGA  309 (399)
T ss_pred             HHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            33344455555556665  3456677888889999999999999999999999999888888888888888888888899


Q ss_pred             HHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHh
Q 009914          102 ALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTL  181 (522)
Q Consensus       102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~  181 (522)
                      ++.|++.+...+.....+.+..|+++|++++++.+....+|..+++.+.+.+.+.     .||+..|++.+++.++..++
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~  384 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----FGYPSIFLAAALAALLGLAL  384 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHH
Confidence            9999999998988888888999999999999999999999999999999999887     79999999998888887777


Q ss_pred             hhhccCCCC
Q 009914          182 VRLFANDPH  190 (522)
Q Consensus       182 ~~~~~~~~~  190 (522)
                      .++++++++
T Consensus       385 ~~~~~~~~~  393 (399)
T PRK05122        385 TWLLYRRAP  393 (399)
T ss_pred             HHHhccccc
Confidence            666655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=6e-13  Score=131.23  Aligned_cols=170  Identities=14%  Similarity=0.017  Sum_probs=137.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhh
Q 009914           14 AGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSST   93 (522)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   93 (522)
                      ..+.............|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.+..+++.++..+.++
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (406)
T PRK11551        228 SYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS  307 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33333333344455567888889999999999999999999999999999999999999988877777777777777778


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHH
Q 009914           94 FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGL  173 (522)
Q Consensus        94 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~  173 (522)
                      .+.+.+..++.|++.+...+...+++.|.+|+++|++.+++.+....+|..+||.+++.+.+..    .+|...+++.+.
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----~~~~~~~~~~~~  383 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----RSTVGVIGASIP  383 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----CchHHHHHHHHH
Confidence            8778888888898888888888999999999999999999999999999999999999998751    356666766666


Q ss_pred             HHHHHHHhhhhccC
Q 009914          174 ISVVVGTLVRLFAN  187 (522)
Q Consensus       174 ~~~i~~~~~~~~~~  187 (522)
                      ..++..+..++..+
T Consensus       384 ~~~~~~~~~~~~~~  397 (406)
T PRK11551        384 VILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHHHHHhc
Confidence            65555555555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.55  E-value=5.3e-13  Score=128.78  Aligned_cols=171  Identities=20%  Similarity=0.255  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhc-CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhH-HHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAAL-HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAH-VIALGAFLWAAATF   86 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~-~l~~~~~~~~~~~~   86 (522)
                      ....+..+.............|.+.++. |.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344445555555566666677666655 999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchH
Q 009914           87 LVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRI  166 (522)
Q Consensus        87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~  166 (522)
                      .....++.+.+.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.+.     .+|+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----~~~~~  332 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----GGYGG  332 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcch
Confidence            9999889999999999999999999999999999999999999999999999999999999999999987     89999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 009914          167 SFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~~~~  184 (522)
                      .|++.+++.++..+..++
T Consensus       333 ~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         333 VFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHHHHHhee
Confidence            999999988887776544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.55  E-value=1.1e-12  Score=128.46  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             hhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009914           25 LPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRAL  103 (522)
Q Consensus        25 ~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  103 (522)
                      +....|. +.+++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.....+........++.+.+++.+++
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444554 557789999999999888888888899999999999999998887776666555555566778888888998


Q ss_pred             HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          104 NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      .+++.+...+....+..|..|+ +|++++++.+....+|..+++.+++.+.+.     .||+..|++.+++.++..++.+
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----WNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888777777888898875 589999999999999999999999999987     7999999988887777666665


Q ss_pred             hc
Q 009914          184 LF  185 (522)
Q Consensus       184 ~~  185 (522)
                      +.
T Consensus       389 ~~  390 (393)
T PRK15011        389 RI  390 (393)
T ss_pred             hh
Confidence            54

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=2.7e-13  Score=134.12  Aligned_cols=149  Identities=13%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHH
Q 009914           35 ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPA  114 (522)
Q Consensus        35 ~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  114 (522)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788999999999999999999999999999999999999999998888888899999999999999998888888


Q ss_pred             HHHHHhhccCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCC
Q 009914          115 IQSLVADSTDDSNRGVAFGW-LQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAND  188 (522)
Q Consensus       115 ~~~~i~~~~~~~~r~~~~~~-~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  188 (522)
                      ...++.+.+|++.|+...+. .+....+|.++++.+.+++.+.     .||+..|.+.+++.++..++.++..++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----IGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88999999999888877655 6777889999999999999987     899999999888887777666665444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.54  E-value=8.8e-11  Score=112.90  Aligned_cols=363  Identities=13%  Similarity=0.052  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC-CChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALH-TDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      +....+....++...+.-++.+..|.+..+.. -+---.+...-.-.+..+++++..|.+.||..|.+++..+.+.--++
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            44567788889999998899998887776663 24444555556666777888999999999999988876665443222


Q ss_pred             ----HHHHH--hh--h-------hHHHHHHHHHHHHHHhhhhHH-HHHHHHhhcc------CCCchhHHHHHHHHHHHHH
Q 009914           85 ----TFLVA--FS--S-------TFAQVAISRALNGIGLALVAP-AIQSLVADST------DDSNRGVAFGWLQLTSNIG  142 (522)
Q Consensus        85 ----~~~~~--~~--~-------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~------~~~~r~~~~~~~~~~~~lg  142 (522)
                          +.+..  +.  +       ....+++.-.+.|.-.-.... ...+.-.||.      +++.+.+.++.+.-.-.+.
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c  161 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC  161 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence                22221  11  1       112222222233322222221 1122223332      3556788899999999999


Q ss_pred             HHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccC-----CCCCCCCCCCCCc--c---------cccch
Q 009914          143 SLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN-----DPHFPDGGTANSD--Q---------VSSKS  206 (522)
Q Consensus       143 ~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~--~---------~~~~~  206 (522)
                      -+++|++.|.+...     .+.+....+.++..++..++=+++..     .|.-..++.+.+.  .         .....
T Consensus       162 kllaPl~vG~l~t~-----~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (432)
T PF06963_consen  162 KLLAPLFVGLLMTF-----ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPS  236 (432)
T ss_pred             HHHHHHHHHHHhhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhh
Confidence            99999999999887     78888888888877777665544321     1211111110000  0         00111


Q ss_pred             hh----hhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhh
Q 009914          207 FR----SDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRM  282 (522)
Q Consensus       207 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  282 (522)
                      ..    +..+...+.++..++.+.+...+...+.+....+....+..|+...|+++...|.+-+...+.++.+.++..++
T Consensus       237 ~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l  316 (432)
T PF06963_consen  237 ILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL  316 (432)
T ss_pred             HHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    12233345566778888877766666665554444566788888889999999999999999999999999999


Q ss_pred             hhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchh
Q 009914          283 GDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP---STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR  359 (522)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  359 (522)
                      .+|+|..+.     -...+..-..+....+..+..+..+   .....+.....+.=+|.-..-. ...-+++|.+|+++|
T Consensus       317 ~~riGlvr~-----G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL-~~~qi~Qe~V~~~~R  390 (432)
T PF06963_consen  317 MKRIGLVRA-----GLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDL-AVTQIMQENVPESER  390 (432)
T ss_pred             HHHhcchhh-----HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhH-HHHHhhcccCCHHHh
Confidence            999997742     2222111111111222222222222   1222222233333344433334 567788999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhH
Q 009914          360 TSVYAMDRSFESILSSFAPP  379 (522)
Q Consensus       360 ~~~~g~~~~~~~~~~~i~~~  379 (522)
                      |+..|+.+..+++...+.-.
T Consensus       391 g~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  391 GAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999977665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=1.5e-12  Score=126.97  Aligned_cols=167  Identities=12%  Similarity=0.035  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      ++...+..++............|.+.+++|.++.++|.+.+...++..+..++.+++.||+|+|+.+.++.+...+..++
T Consensus       207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~  286 (382)
T TIGR00902       207 NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI  286 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555667777789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCchH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQ-LTSNIGSLVGGLFSVVMAPMTFMGIPGWRI  166 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~  166 (522)
                      ++++++.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|.++|+.++|++.+.     .|+ .
T Consensus       287 ~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-----~g~-~  359 (382)
T TIGR00902       287 IGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-----LGA-G  359 (382)
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-H
Confidence            99999999999999999999999999999999998 8889999999986 57789999999999999988     786 6


Q ss_pred             HHHHHHHHHHHHHHh
Q 009914          167 SFHIVGLISVVVGTL  181 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~  181 (522)
                      .|++.+++.++..++
T Consensus       360 ~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       360 TFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777777655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=6.1e-13  Score=131.31  Aligned_cols=161  Identities=16%  Similarity=0.181  Sum_probs=133.9

Q ss_pred             HhhhhhhHHHHHHHhcCCChh----hhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009914           21 DESLLPGVYKEVGAALHTDPT----GLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQ   96 (522)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~s~~----~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~   96 (522)
                      ......+..+.+..+.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T PRK09874        234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQ  313 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHH
Confidence            333444555655555433333    3456667778888899999999999999999999998888888877777788888


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHH
Q 009914           97 VAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISV  176 (522)
Q Consensus        97 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~  176 (522)
                      +++.+++.|++.+...+...+++.+..|+++|++.+++......+|..+||.+++.+.+.     .||+..|++.+++.+
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----~g~~~~f~~~~~~~l  388 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----YGFRAVFLVTAGVVL  388 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----cchhHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999887     899999999999888


Q ss_pred             HHHHhhhhcc
Q 009914          177 VVGTLVRLFA  186 (522)
Q Consensus       177 i~~~~~~~~~  186 (522)
                      +..++.++..
T Consensus       389 ~~~~~~~~~~  398 (408)
T PRK09874        389 FNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHH
Confidence            8777766544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.53  E-value=4.4e-13  Score=130.75  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=132.9

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhh
Q 009914           14 AGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSST   93 (522)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   93 (522)
                      ..+.............+.+.++++.++.+.+.+.+...++..++.++.|++.||+|||+.+.++.++.+++.++..+.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T TIGR00890       213 SFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM  292 (377)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc
Confidence            33333333333444456667889999999999999999999999999999999999999999998888888887777664


Q ss_pred             H--HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHH
Q 009914           94 F--AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIV  171 (522)
Q Consensus        94 ~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~  171 (522)
                      .  ..+++..++.|++.+...+...+++.|.+|+++|++.+++.+....+|..++|.+.+.+.+.     .||+..|++.
T Consensus       293 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~f~~~  367 (377)
T TIGR00890       293 LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-----IGFEYTFIVT  367 (377)
T ss_pred             chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-----hchhhHHHHH
Confidence            3  33445677888888888878888999999999999999999999999999999999999887     8999999998


Q ss_pred             HHHHHHHH
Q 009914          172 GLISVVVG  179 (522)
Q Consensus       172 ~~~~~i~~  179 (522)
                      +++.++..
T Consensus       368 ~~~~~~~~  375 (377)
T TIGR00890       368 GAFALTSL  375 (377)
T ss_pred             HHHHHHhc
Confidence            87766543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.52  E-value=5e-11  Score=112.37  Aligned_cols=340  Identities=11%  Similarity=0.057  Sum_probs=228.4

Q ss_pred             hhhhhHHHHHHHh-cCCChhhhH-HHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009914           23 SLLPGVYKEVGAA-LHTDPTGLG-SLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAIS  100 (522)
Q Consensus        23 ~~~~~~~~~~~~~-~g~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (522)
                      -.-+.+.|++.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+.
T Consensus        21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~  100 (412)
T PF01770_consen   21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLM  100 (412)
T ss_pred             CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence            3456667777775 899988875 45555566677788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHH
Q 009914          101 RALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGT  180 (522)
Q Consensus       101 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~  180 (522)
                      .++.|++.+. ..+..+++-...|+++-.++.+...+..-+|..++.++|-.+...   +..+++...++......+..+
T Consensus       101 q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---~~~sy~~L~~isl~~~~~a~~  176 (412)
T PF01770_consen  101 QFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---GGVSYFQLNYISLASVSLALL  176 (412)
T ss_pred             HHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence            9999998665 668889999999999999999999999999999999999988764   225667777776665566666


Q ss_pred             hhhhccCCCCCC---CCC----------CCC-Cc-cc-----------ccchhhhhhHHHHHHhhhhhcchhHHHHHHHh
Q 009914          181 LVRLFANDPHFP---DGG----------TAN-SD-QV-----------SSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG  234 (522)
Q Consensus       181 ~~~~~~~~~~~~---~~~----------~~~-~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (522)
                      +.+++|..++..   +..          .+. ++ .+           .........+..+++.+...++|.++...+.-
T Consensus       177 ~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWW  256 (412)
T PF01770_consen  177 IALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWW  256 (412)
T ss_pred             HHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            666666533211   100          000 00 00           00111122345667777888888877665554


Q ss_pred             hhccch-hHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHH
Q 009914          235 VTGSFP-WSALSFAAMWLELT---GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  310 (522)
Q Consensus       235 ~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (522)
                      .+.... +...++.....++.   +-.....|.+-+...+.+.++.+..|++..++.+..    .+.+...+.+.+..+.
T Consensus       257 a~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~----~l~l~~~S~l~a~~L~  332 (412)
T PF01770_consen  257 AFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG----ELALGVFSLLQAGLLF  332 (412)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH----HHHHHHHHHHHHHHHH
Confidence            444443 33445555444443   334455688888888888888899998855544431    1222222222222111


Q ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchh
Q 009914          311 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFA  377 (522)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  377 (522)
                      ..      ....+.+...+..++++.......+ ....-++.....+.-|.+.|+.+++..+...+-
T Consensus       333 lm------~~t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil  392 (412)
T PF01770_consen  333 LM------SFTGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTIL  392 (412)
T ss_pred             HH------HHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence            11      1234555566777777777776666 555666666667888899998887766555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=1.8e-12  Score=128.23  Aligned_cols=157  Identities=17%  Similarity=0.118  Sum_probs=136.3

Q ss_pred             hhhHHHHHHHh-cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009914           25 LPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRAL  103 (522)
Q Consensus        25 ~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  103 (522)
                      .....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            44456666666 89999999999999999999999999999999888888888888888888888888888888888999


Q ss_pred             HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          104 NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      .|++.+...+...+++.+..|++.|++.+++......+|..+|+.+.+.+.+.     .|++..+++.++..++..++..
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~  396 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-----MTPVASASASGFGLLIIGVLLL  396 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-----hchhhHHHHHHHHHHHHHHHHH
Confidence            99998888888889999999999999999999999999999999999999987     8999999888877777666665


Q ss_pred             hcc
Q 009914          184 LFA  186 (522)
Q Consensus       184 ~~~  186 (522)
                      ...
T Consensus       397 ~~~  399 (417)
T PRK10489        397 LVL  399 (417)
T ss_pred             Hhc
Confidence            543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.51  E-value=3.4e-12  Score=125.04  Aligned_cols=158  Identities=14%  Similarity=0.038  Sum_probs=128.2

Q ss_pred             hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHH
Q 009914           25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT-FLVAFSSTFAQVAISRAL  103 (522)
Q Consensus        25 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l  103 (522)
                      .....|.+.+.+|.|..+.+++.+...++..+++++.|++.||++||+.+. +..+..++. .+....++.+.+++..++
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l  303 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF  303 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            334445566678999999999999999999999999999999999887544 444333333 334456677888888999


Q ss_pred             HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          104 NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      .|++.+...+...+.+.+..| ++|++++++......+|..+||++++.+.+.     .|++..|++.+++.++..+..+
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-----LGLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHHHHH
Confidence            999988777778888888766 5789999999999999999999999999988     8999999999988888777776


Q ss_pred             hccCCC
Q 009914          184 LFANDP  189 (522)
Q Consensus       184 ~~~~~~  189 (522)
                      ...+++
T Consensus       378 ~~~~~~  383 (390)
T PRK03545        378 LIFRRF  383 (390)
T ss_pred             HHcccc
Confidence            665443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=3e-12  Score=124.89  Aligned_cols=155  Identities=15%  Similarity=0.078  Sum_probs=127.7

Q ss_pred             hhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009914           23 SLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRA  102 (522)
Q Consensus        23 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  102 (522)
                      ......+|.+.++.|.++.+.|++.+...++..+++++.|++.||+|+|+++..+..+.+++.+...  + ........+
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~  293 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHH
Confidence            3344456777778899999999999999999999999999999999999999888887777665443  2 233445677


Q ss_pred             HHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhh
Q 009914          103 LNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~  182 (522)
                      +.|++.....|...+++.|..|+++++...+......++|..+||.+++++.+.     .+|++.|++.+.+.++..+..
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-----YSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHHHH
Confidence            788877778899999999999888888888888889999999999999999988     899999999888877666555


Q ss_pred             hhc
Q 009914          183 RLF  185 (522)
Q Consensus       183 ~~~  185 (522)
                      ++.
T Consensus       369 ~~~  371 (381)
T PRK03633        369 LRK  371 (381)
T ss_pred             Hhc
Confidence            543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.49  E-value=4.3e-12  Score=123.76  Aligned_cols=149  Identities=15%  Similarity=0.112  Sum_probs=126.9

Q ss_pred             HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 009914           31 EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLAL  110 (522)
Q Consensus        31 ~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  110 (522)
                      .+.+++|.++.+.|++.+.......++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577899999999998888778888899999999999999998888777666666666677888888889999999998


Q ss_pred             hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009914          111 VAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLF  185 (522)
Q Consensus       111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~  185 (522)
                      ..+....++.|..|+ ++++++++.+....+|..++|.+++.+.+.     .||+..|++.+++.++..++..+.
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-----WSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhee
Confidence            888888999998875 567999999999999999999999999887     799999999888877776665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=2.1e-12  Score=126.65  Aligned_cols=157  Identities=17%  Similarity=0.090  Sum_probs=133.6

Q ss_pred             hhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009914           22 ESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISR  101 (522)
Q Consensus        22 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  101 (522)
                      ........|.+.++.+.+.  .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (392)
T PRK12382        232 FAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGA  309 (392)
T ss_pred             HhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3344455555666666653  45666778888889999999999999999999999998888888888888888888899


Q ss_pred             HHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHh
Q 009914          102 ALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTL  181 (522)
Q Consensus       102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~  181 (522)
                      ++.|++.+...+...+.+.+.+|+++|++++++.+....+|..+||.+.+.+.+.     .||+..|.+.+++.++..++
T Consensus       310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-----FGYPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999999999999988     89999999999888777766


Q ss_pred             hhhc
Q 009914          182 VRLF  185 (522)
Q Consensus       182 ~~~~  185 (522)
                      .++.
T Consensus       385 ~~~~  388 (392)
T PRK12382        385 TILS  388 (392)
T ss_pred             HHhh
Confidence            6554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.49  E-value=1.9e-12  Score=129.80  Aligned_cols=178  Identities=12%  Similarity=-0.032  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      ++.+++..++............|. +.+++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            444555555555555555666674 5567999999999999999999999999999999999999877665444443332


Q ss_pred             H--HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHH-HHHHHHHHHHhhhcc-c-----
Q 009914           87 L--VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNI-GSLVGGLFSVVMAPM-T-----  157 (522)
Q Consensus        87 ~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-g~~~g~~l~~~l~~~-~-----  157 (522)
                      +  ....++...+.+.+++.|++.............|.+|++.|+.+.|+.+....+ |..++|.+.|.+.+. .     
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            2  223346666667788888654333333346677999999999999999999886 779999999999881 0     


Q ss_pred             -ccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009914          158 -FMGIPGWRISFHIVGLISVVVGTLVRLF  185 (522)
Q Consensus       158 -~~~~~gw~~~f~~~~~~~~i~~~~~~~~  185 (522)
                       .....+|+..|++.++..++..+..+++
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence             0012689999999877777765555543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=3.6e-12  Score=128.61  Aligned_cols=178  Identities=13%  Similarity=0.044  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      .+....+..+.............|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+..+.++.+++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  364 (481)
T TIGR00879       285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF  364 (481)
T ss_pred             HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34444444444444455566777888899999998889999999999999999999999999999999988888877777


Q ss_pred             HHHhh-----h------hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914           87 LVAFS-----S------TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus        87 ~~~~~-----~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      +.++.     +      +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66521     1      222233333333332233345666778999999999999999999999999999999999988


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHhhhhccCCC
Q 009914          156 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP  189 (522)
Q Consensus       156 ~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~  189 (522)
                      .     .+|++.|++.++++++..++.+++.+++
T Consensus       445 ~-----~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       445 S-----IGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             h-----cCccceehhHHHHHHHHHHHHheecccC
Confidence            7     7999999999988888877776655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=1.4e-11  Score=120.99  Aligned_cols=170  Identities=15%  Similarity=0.109  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHH-HHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIA-LGAFLWAAATFL   87 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~-~~~~~~~~~~~~   87 (522)
                      ....+..++............|.+.+++|.+..+.+.+.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~  304 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA  304 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            3444445555555555666778888889999999999999999999999999999999999888754 333333333333


Q ss_pred             HHh-----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           88 VAF-----SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        88 ~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      +.+     .++.+.+++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.+++.+.+.     .
T Consensus       305 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-----~  377 (402)
T TIGR00897       305 LYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-----F  377 (402)
T ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence            322     23566777788888988777654 445666754 56899999999999999999999999999988     8


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhc
Q 009914          163 GWRISFHIVGLISVVVGTLVRLF  185 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~  185 (522)
                      ||+.+|++.+++.++..++..++
T Consensus       378 g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       378 GAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998887777766553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=6.2e-12  Score=123.24  Aligned_cols=173  Identities=10%  Similarity=0.058  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      +..+.+..++.......+....|.+. +++|.+..+.+.+.+.+.++..++.++.|+++||+++|+.+.....+.++...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~  286 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence            34445555555555555556667655 67899999999999999999999999999999999999998888777777766


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchH
Q 009914           87 LVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRI  166 (522)
Q Consensus        87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~  166 (522)
                      +....++.+.+.+..++.|++.+...+...++..+..| +++++..+.......+|..++|.+.+.+.+.     .||+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-----~g~~~  360 (394)
T PRK03699        287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-----FGLQA  360 (394)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----hCchh
Confidence            66667777777778888999888888888888888765 4467888999999999999999999999987     89999


Q ss_pred             HHHHHHHHHHHHHHhhhhcc
Q 009914          167 SFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       167 ~f~~~~~~~~i~~~~~~~~~  186 (522)
                      .+++.+++.++..+.....+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        361 ALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             hhhhhHHHHHHHHHHHHHHH
Confidence            99988888777766555544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=2.3e-12  Score=128.37  Aligned_cols=169  Identities=12%  Similarity=0.095  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH--hchhHHHH--HHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR--HNRAHVIA--LGAFLWAA   83 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr--~grr~~l~--~~~~~~~~   83 (522)
                      +....+..++...........+|.+.+++|.+..+.+++.++..++..+++++.|++.||  +++|+...  .+.++.++
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l  322 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL  322 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence            334444455555555555566677778899999999999999999999999999999997  34444333  33444445


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC-
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP-  162 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~-  162 (522)
                      +.+++.+.++++.+++.+++.|++.+...+...+++.|.+|++++++.+++.+...++|.++||.+++.+.+.     . 
T Consensus       323 ~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~-----~g  397 (455)
T TIGR00892       323 THLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA-----TK  397 (455)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh-----cC
Confidence            5556667788898999999999999999999999999999999999999999999999999999999999876     4 


Q ss_pred             CchHHHHHHHHHHHHHHHh
Q 009914          163 GWRISFHIVGLISVVVGTL  181 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~  181 (522)
                      +|+..|++.+++.++..+.
T Consensus       398 ~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       398 NYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             CcchHHHHhhHHHHHHHHH
Confidence            5999999988876665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.43  E-value=7.7e-12  Score=126.79  Aligned_cols=148  Identities=9%  Similarity=0.096  Sum_probs=116.0

Q ss_pred             hhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 009914           25 LPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS--STFAQVAISR  101 (522)
Q Consensus        25 ~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r  101 (522)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+..+..+..++....  .+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            345667666 5899999999999999999999999999999999999999888877666665544333  3334444445


Q ss_pred             HHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHH
Q 009914          102 ALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVV  177 (522)
Q Consensus       102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i  177 (522)
                      ++.+.......+...+++.+.+|+++|++.+++......+|..+||.+++.+.+.     .||+..+...+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-----~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-----LDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHH
Confidence            5544443344566678899999999999999999999999999999999999987     8999888665544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=2.4e-11  Score=118.91  Aligned_cols=173  Identities=15%  Similarity=0.099  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   89 (522)
                      .+.+..++............|.+.+++|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..
T Consensus       209 ~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~  288 (393)
T PRK09705        209 TLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI  288 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555666777777999999999999999999999999999999999999998888877777766554


Q ss_pred             hhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           90 FSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        90 ~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      ..+ +...+  .-++.|++.+...+.......+..+ ++++++.+++.+....++..++|.+.+++.+..    .+|...
T Consensus       289 ~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~----g~~~~~  362 (393)
T PRK09705        289 WLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS----GNYLMD  362 (393)
T ss_pred             HccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHH
Confidence            433 22222  2345688888888877777777775 567899999999999999999999999999872    248888


Q ss_pred             HHHHHHHHHHHHHhhhhccCC
Q 009914          168 FHIVGLISVVVGTLVRLFAND  188 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~~~  188 (522)
                      |++.++..++..+....+.++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        363 WAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            888877777766665555433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=3.7e-11  Score=117.23  Aligned_cols=164  Identities=12%  Similarity=0.036  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF   90 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   90 (522)
                      +.+..++............|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        210 FLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33334433333333444556666789999999999999999999999999999999999999999999999998888888


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHH-HHHHHHHHHHHHHHHhhhcccccCCCCchHHHH
Q 009914           91 SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQ-LTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFH  169 (522)
Q Consensus        91 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~  169 (522)
                      .++.+.+++..++.|++.+...+....++.+. +++++++..+... ....+|..+||.++|.+.+.     .|+ ..|+
T Consensus       290 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-----~g~-~~~~  362 (382)
T PRK11128        290 TTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-----LGA-GVFW  362 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-HHHH
Confidence            89999999999999999999999999998886 5666788888876 55678889999999999987     777 4676


Q ss_pred             HHHHHHHHHHHh
Q 009914          170 IVGLISVVVGTL  181 (522)
Q Consensus       170 ~~~~~~~i~~~~  181 (522)
                      ..+++.++..++
T Consensus       363 ~~~~~~~~~~~~  374 (382)
T PRK11128        363 VMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            666665554443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=9.2e-10  Score=105.69  Aligned_cols=359  Identities=13%  Similarity=0.094  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC-----hhhhHHH-HHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHTD-----PTGLGSL-TLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-----~~~~g~~-~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ..+.++..........-..+...+.+..+..     ....|.. .++-.....+..++.+.+.|+.|.|..+.++...+.
T Consensus        12 ~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~   91 (461)
T KOG3098|consen   12 LMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYA   91 (461)
T ss_pred             eehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHH
Confidence            3444555555554444455555444433221     1223443 677778888999999999999999999999999888


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc---c
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF---M  159 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~---~  159 (522)
                      .-.+.+.+ +|-+.+++...+.|+|.+..+..--.++++..+++++.+..++..+....+.++|..+-..+.....   .
T Consensus        92 ~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~  170 (461)
T KOG3098|consen   92 AFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAI  170 (461)
T ss_pred             HHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccc
Confidence            77666544 5677888999999999999999999999999999999999999999999999999776655543321   0


Q ss_pred             CCCCch--------H---HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHH
Q 009914          160 GIPGWR--------I---SFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQ  228 (522)
Q Consensus       160 ~~~gw~--------~---~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (522)
                      ...+.+        .   ...+.+++..+..+...-....|.......+   +.. +   ....+.++..-+.++++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~---~~~-~---~~~~~~l~~~~~l~~~~~ml  243 (461)
T KOG3098|consen  171 ITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCK---SSS-E---TSFSELLKLTFKLLKTPKML  243 (461)
T ss_pred             cccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhh---hhc-c---ccHHHHHHHHHHHhcCHhHH
Confidence            011111        0   1111111111111111111111211110000   000 0   22344555555566666666


Q ss_pred             HHHHHhhhccchhH-HHHHHHHHHH---HhCCCh-hHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHH
Q 009914          229 IIVAQGVTGSFPWS-ALSFAAMWLE---LTGFSH-EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  303 (522)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  303 (522)
                      .+...++....... .....|..+.   ..+.+. ...+......+++.+++....+.+.+|.++....  ..+..  ..
T Consensus       244 ~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~--~~  319 (461)
T KOG3098|consen  244 LLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLI--GI  319 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhH--HH
Confidence            55554444433222 2223444332   333333 3345555567778888888888888776554321  12221  11


Q ss_pred             HHHHHHHHHHHHhCCCCC-------------chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHH
Q 009914          304 LSAIPLAALLLLVLPDDP-------------STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE  370 (522)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  370 (522)
                      .+-.....+..+..+...             +...+..++.++.|++.+.... ..+.++....| ++|.++.++..+-.
T Consensus       320 ~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t-~~~~ii~~~~~-~~~~~~fsi~kfyq  397 (461)
T KOG3098|consen  320 IIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNT-QRYVIIALLYP-DDRAQAFSLFKFYQ  397 (461)
T ss_pred             HHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc-CchHHHHHHHHHHH
Confidence            121212222222222211             1234577788899999998888 88888888884 77888888888777


Q ss_pred             HHHhchhhHHH
Q 009914          371 SILSSFAPPVV  381 (522)
Q Consensus       371 ~~~~~i~~~~~  381 (522)
                      .+...++-...
T Consensus       398 ~~~s~v~~f~~  408 (461)
T KOG3098|consen  398 SVASCVAFFFS  408 (461)
T ss_pred             HHHHHHHhhhh
Confidence            76666554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=1.1e-11  Score=121.57  Aligned_cols=164  Identities=14%  Similarity=0.064  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH-
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT-   85 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~-   85 (522)
                      +.......+.............|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+.+.....+..+.. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  300 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            44444455555555555556666655 7789999999999999999999999999999999999998775544443332 


Q ss_pred             H-HHHh--hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           86 F-LVAF--SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWL-QLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        86 ~-~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      . ...+  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++. .....+|..++|.+++.+.+.     
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~-----  375 (394)
T TIGR00883       301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM-----  375 (394)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH-----
Confidence            2 2222  246677777888899998899999999999999999999999984 566678999999999999987     


Q ss_pred             CC-chHHHHHHHHHHH
Q 009914          162 PG-WRISFHIVGLISV  176 (522)
Q Consensus       162 ~g-w~~~f~~~~~~~~  176 (522)
                      .| |+..++...+..+
T Consensus       376 ~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       376 TGDWYAIGYYLAALAL  391 (394)
T ss_pred             cCcchhHHHHHHHHHH
Confidence            66 8887777665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.40  E-value=1.7e-10  Score=115.80  Aligned_cols=156  Identities=11%  Similarity=0.057  Sum_probs=123.3

Q ss_pred             hHHHHHHHhcCCChhhhHHHHH-HHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 009914           27 GVYKEVGAALHTDPTGLGSLTL-FRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV---AFS-STFAQVAISR  101 (522)
Q Consensus        27 ~~~~~~~~~~g~s~~~~g~~~s-~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r  101 (522)
                      ...|.+.+++|.+..+.|++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.+.+   +.. ++.+.+.+..
T Consensus       244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3445556789999999999974 6668999999999999999999988776665555443332   232 3555555566


Q ss_pred             HHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHh
Q 009914          102 ALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTL  181 (522)
Q Consensus       102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~  181 (522)
                      ++..++.+...+...++..+..+++.+++.+++.+...++|..+++.+.|.+.+.     .||+..|.+.++++++..++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~l~~l~~  398 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-----HGWPTFYLFSVAAAVPGLLL  398 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHH
Confidence            6766666766777788999999999999999999999999999998999999987     89999999998888887777


Q ss_pred             hhhccC
Q 009914          182 VRLFAN  187 (522)
Q Consensus       182 ~~~~~~  187 (522)
                      ..+..+
T Consensus       399 ~~~~~~  404 (491)
T PRK11010        399 LLVCRQ  404 (491)
T ss_pred             HHHHHh
Confidence            766543

>PRK10504 putative transporter; Provisional

Probab=99.39  E-value=3.7e-11  Score=120.87  Aligned_cols=148  Identities=12%  Similarity=0.092  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      .......++............|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|||+++..+..+.+++.++
T Consensus       264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~  343 (471)
T PRK10504        264 SLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLL  343 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            33444455555555566667777665 58999999999999999999989999999999999999999988888877666


Q ss_pred             HHhh---hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           88 VAFS---STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        88 ~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ..+.   ++.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.+++.+.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        344 FMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6553   33444455677888999988999999999999999999999999999999999999999988765

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.8e-12  Score=117.75  Aligned_cols=131  Identities=18%  Similarity=0.263  Sum_probs=105.1

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHH
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  326 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (522)
                      .|...++.++|..+.|.+.+...+..-++.++.|.++||.+.|+-     +... .++     ..+..+.+.. .++.++
T Consensus        52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-----m~~g-Lil-----sai~nil~Gf-s~s~~~  119 (448)
T COG2271          52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-----MAFG-LIL-----SAIVNILFGF-SPSLFL  119 (448)
T ss_pred             cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-----ehHH-HHH-----HHHHHHHHhh-hhHHHH
Confidence            567777888999999999999999999999999999999998852     1111 111     1111111111 236667


Q ss_pred             HHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHH--HHHHHHhhCc
Q 009914          327 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV--GILAQHVYGF  391 (522)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~--g~l~~~~~g~  391 (522)
                      +.++..+-|.+.+...| .+...+...+|+++||+..|+.|+..++|+++.|++.  +++.++ +++
T Consensus       120 ~~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~-~~w  184 (448)
T COG2271         120 FAVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH-GGW  184 (448)
T ss_pred             HHHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc-cch
Confidence            88889999999999999 8899999999999999999999999999999999999  888777 455

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=5.7e-11  Score=111.50  Aligned_cols=176  Identities=14%  Similarity=0.054  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ++.+...+....+.....+..+.++-|.+.+..|.|.+.++++..++.++..++..++|++.|| +.|+.+.....+.++
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~  288 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL  288 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence            3444455555555555566778889999999999999999999999999999999999999999 889988888777777


Q ss_pred             HHHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           84 ATFLVAFSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        84 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      ..+.+.+.+ +.+..++.-++.|+..+.........+++ ..++.+..+.++.....++|..+|..++|.+.++     .
T Consensus       289 ~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-----~  362 (394)
T COG2814         289 ALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-----L  362 (394)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h
Confidence            777666654 55566677777888877777777777777 4467789999999999999999999999999998     9


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhcc
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      |+....++.+++.++..++.+...
T Consensus       363 g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         363 GYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888877776644

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.39  E-value=5e-11  Score=118.83  Aligned_cols=160  Identities=21%  Similarity=0.198  Sum_probs=142.0

Q ss_pred             HHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           20 ADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVA   98 (522)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~   98 (522)
                      +.......++|.+. +.+|.++...|++.++..+|..+++++.+++.+|+++++++..+.++.+++.+.++++++.+..+
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~  311 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLAL  311 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33334445677665 56899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHH
Q 009914           99 ISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVV  178 (522)
Q Consensus        99 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~  178 (522)
                      +..++.|++.....+...+.+.+..|++.|||.++++.+....+..+|.++.|.+.+.     .|.+..+.+.++..++.
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-----~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-----FGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998     89999998888766666


Q ss_pred             HHhhhh
Q 009914          179 GTLVRL  184 (522)
Q Consensus       179 ~~~~~~  184 (522)
                      .++...
T Consensus       387 ~~~~~~  392 (524)
T PF05977_consen  387 ALIALR  392 (524)
T ss_pred             HHHHHH
Confidence            555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.37  E-value=9.6e-11  Score=115.57  Aligned_cols=178  Identities=16%  Similarity=0.131  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchh--HHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESL-LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRA--HVIALGAFLW   81 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr--~~l~~~~~~~   81 (522)
                      .+.+....+++++..-+.+. ......+..+++|++..+...+..+..+...++++++|++.||+|.|  ++++++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            34555566666554444433 44444555669999999999999999999999999999999999998  8888888777


Q ss_pred             HHHHHHHHh--------hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           82 AAATFLVAF--------SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        82 ~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      .+..+.-.+        ..+.+.+.+.-++.|+..|..++...++.++..|+++.+..+|++....-....+||++.+.+
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444        567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      .+..    .+-|+.+....++.++..++.++..
T Consensus       440 ~~~t----g~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  440 TDAT----GSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHh----CCchhHHHHHHHHHHHHHHHHhhcc
Confidence            8873    3478888888777776666665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=1.5e-10  Score=114.86  Aligned_cols=161  Identities=17%  Similarity=0.100  Sum_probs=117.5

Q ss_pred             hhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh---h-hhHHHH
Q 009914           23 SLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF---S-STFAQV   97 (522)
Q Consensus        23 ~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l   97 (522)
                      .......| ++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.+..   . ++.+.+
T Consensus       267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T PRK09952        267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV  346 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            33333444 455678988877666666667777888999999999999999988887766555443322   1 234444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHH
Q 009914           98 AISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLT-SNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISV  176 (522)
Q Consensus        98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~  176 (522)
                      ++..++.+++.+...+...+++.|.+|.+.|+...++.... ..+|..++|.+.+++.+..   ..+|+.++...++..+
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---~~~~~~~~~~~~~~~~  423 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---GGSWHSVAIYLLAGCL  423 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence            55667778888888888899999999999999888886544 4589999999999997641   0358888888877777


Q ss_pred             HHHHhhhhcc
Q 009914          177 VVGTLVRLFA  186 (522)
Q Consensus       177 i~~~~~~~~~  186 (522)
                      +..+..+..+
T Consensus       424 i~~v~~~~~~  433 (438)
T PRK09952        424 ISAMTALLMK  433 (438)
T ss_pred             HHHHHHHHcc
Confidence            7766665543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=5.7e-11  Score=116.62  Aligned_cols=172  Identities=13%  Similarity=0.118  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH--HHH------H
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV--IAL------G   77 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~--l~~------~   77 (522)
                      .+....+..+.............|.+ .+++|.++.+.+++.+...++..++.++.|++.||++||+.  ...      +
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            34455555666666656666666655 46689999999999999999999999999999999999961  111      1


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009914           78 AFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT  157 (522)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~  157 (522)
                      .++..+........++.+..+...++.+.+.+ ..+...+++.|.+|+++|++.+++.+....+|..++|.+.+.+.+. 
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-  373 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-  373 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-
Confidence            11111111111112234444444444444444 7888999999999999999999999999999999999999999887 


Q ss_pred             ccCCCC-chHHHHHHHHHHHHHHHhhhh
Q 009914          158 FMGIPG-WRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       158 ~~~~~g-w~~~f~~~~~~~~i~~~~~~~  184 (522)
                          .| |+..|++.++..++..+..++
T Consensus       374 ----~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       374 ----TGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             ----CCchhHHHHHHHHHHHHHHHHHHH
Confidence                67 999999988877776665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=4.8e-11  Score=117.64  Aligned_cols=137  Identities=10%  Similarity=0.141  Sum_probs=113.5

Q ss_pred             HHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHh
Q 009914           30 KEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF-LVAFSSTFAQVAISRALNGIGL  108 (522)
Q Consensus        30 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~  108 (522)
                      +.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....++.+.+.+..++.|+..
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999998887766533332 3334456666777777777777


Q ss_pred             hhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC-chHHHHHH
Q 009914          109 ALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG-WRISFHIV  171 (522)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g-w~~~f~~~  171 (522)
                      +...+...+++.|.+|+++|++++|+.+....+|..++|++.+.+.+.     .| |+..+...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----~g~~~~~~~~~  401 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-----LDEYGTALASL  401 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHhh
Confidence            777778889999999999999999999999999999999999999987     66 77766553

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.34  E-value=9.5e-11  Score=116.32  Aligned_cols=175  Identities=12%  Similarity=0.027  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh--chhHHH-HHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH--NRAHVI-ALGAFLWAA   83 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--grr~~l-~~~~~~~~~   83 (522)
                      ++.+.++.+........+...+|.+. +++|.+..+.+...+...++..++.++.|+++||+  ++|+.. ....+...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~  324 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence            34444445555554445555666555 67899999999999999999999999999999998  333322 221111111


Q ss_pred             HHHHHH--hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           84 ATFLVA--FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        84 ~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      ......  ...+...+.+..+..|++...........+.|.+|+++|++.+|+.+....+|..++|.+.+++.+.     
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-----  399 (434)
T PRK11663        325 SVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-----  399 (434)
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-----
Confidence            111111  1223333333444444433222223345678889999999999999999999999999999999987     


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          162 PGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       162 ~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      .||+..|++.+++.++..+..+...+
T Consensus       400 ~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        400 WHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999988887776665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.34  E-value=9.7e-11  Score=116.92  Aligned_cols=174  Identities=10%  Similarity=-0.001  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh--chhHHH-HHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH--NRAHVI-ALGAFLWAA   83 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--grr~~l-~~~~~~~~~   83 (522)
                      ++...+..++...........+|.+.+ +.|.+..+.+++...+.++..++.+++|+++||+  +||+.. .....+..+
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~  334 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  334 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            344445554444444555566776655 4799999999999999999999999999999999  555432 222233333


Q ss_pred             HHHHHHhh--hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhhcccccC
Q 009914           84 ATFLVAFS--STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSL-VGGLFSVVMAPMTFMG  160 (522)
Q Consensus        84 ~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~-~g~~l~~~l~~~~~~~  160 (522)
                      +.++..+.  .+.+...+..++.|.+..........++.|.+|+++|++++|+.+....+|.. ++|.+.+.+.+.    
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~----  410 (452)
T PRK11273        335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----  410 (452)
T ss_pred             HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH----
Confidence            33333222  24444444555555543333333445677999999999999999988888765 579999999988    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                       .||+..|++.++.+++..+....+.
T Consensus       411 -~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        411 -FGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             -hcchHHHHHHHHHHHHHHHHHHHHh
Confidence             7999999998887777766665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.33  E-value=1.6e-10  Score=116.70  Aligned_cols=166  Identities=14%  Similarity=0.085  Sum_probs=123.1

Q ss_pred             hhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhh--hH--HHHHH
Q 009914           24 LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSS--TF--AQVAI   99 (522)
Q Consensus        24 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~--~~--~~l~~   99 (522)
                      ......|.+.++.|.+....++......+...++.++.|+++||+|||++++.+.++.+++.++++...  +.  .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344556888888999888777777788888999999999999999999999999999888877765432  11  12223


Q ss_pred             HHHHHHHHhhh-hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCCchHHHHHHHHHHHH
Q 009914          100 SRALNGIGLAL-VAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM-TFMGIPGWRISFHIVGLISVV  177 (522)
Q Consensus       100 ~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~-~~~~~~gw~~~f~~~~~~~~i  177 (522)
                      +.++.+.+.+. ..+....++.|.+|+++|++++++......+|.++++.+.+.+.+. ...+..+|+..|++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            34444444443 2366789999999999999999999999999999887666544410 001127899999998888887


Q ss_pred             HHHhhhhccCCC
Q 009914          178 VGTLVRLFANDP  189 (522)
Q Consensus       178 ~~~~~~~~~~~~  189 (522)
                      ..++.+++.+|+
T Consensus       449 ~~~~~~~~~~e~  460 (479)
T PRK10077        449 AALFMWKFVPET  460 (479)
T ss_pred             HHHHHHhccccC
Confidence            777776665443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.33  E-value=1.8e-10  Score=112.91  Aligned_cols=152  Identities=16%  Similarity=0.076  Sum_probs=116.8

Q ss_pred             hhhHHHHHHHhcCCChhhhHHHHHHHHH-HHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh------hhhHHHH
Q 009914           25 LPGVYKEVGAALHTDPTGLGSLTLFRSI-VQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF------SSTFAQV   97 (522)
Q Consensus        25 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~------~~~~~~l   97 (522)
                      .....+.+.++.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+....      .++...+
T Consensus       227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            3334556666789999999999888764 66677889999999999999988877665333332221      1233444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhccCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHH
Q 009914           98 AISRALNGIGLALVAPAIQSLVADSTDD-SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISV  176 (522)
Q Consensus        98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~  176 (522)
                      +...++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+.     .||+..|++.+++.+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-----~G~~~~f~~~~~~~l  381 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-----FGYAGGFLSGTVLAV  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHH
Confidence            5555666777788888888888888776 7889999999999999999999999999988     799999998887766


Q ss_pred             HHHHh
Q 009914          177 VVGTL  181 (522)
Q Consensus       177 i~~~~  181 (522)
                      +..++
T Consensus       382 ~a~~~  386 (390)
T TIGR02718       382 LAILL  386 (390)
T ss_pred             HHHHH
Confidence            65544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.32  E-value=1.4e-10  Score=115.08  Aligned_cols=140  Identities=11%  Similarity=0.029  Sum_probs=105.9

Q ss_pred             hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009914           25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALN  104 (522)
Q Consensus        25 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  104 (522)
                      ....+|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            44566777777899999999999999999999999999999999999998888877766655444333222222222333


Q ss_pred             HH--HhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHH
Q 009914          105 GI--GLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFH  169 (522)
Q Consensus       105 G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~  169 (522)
                      |+  +.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+.     .|+....+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-----~g~~~~~~  391 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-----MGLGAALT  391 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-----ccHHHHHH
Confidence            33  22233445567889999999999999999999999999999999999887     67655433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=1e-10  Score=113.47  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=118.0

Q ss_pred             hHHHHHHHh-cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Q 009914           27 GVYKEVGAA-LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSST-FAQVAISRALN  104 (522)
Q Consensus        27 ~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~  104 (522)
                      ...|.+.++ +|.++.+.+++.+...++..++.++.+++.||++||+.+..+..+.+++.++..+.++ ++.+++..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            566776665 8999999999999999999999999999999999999998888888888887777774 88888899999


Q ss_pred             HHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914          105 GIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus       105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      |++.+...+...+++.|..|+++|++.+++.+....+|..+++.+++.+.+.
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.30  E-value=7.1e-11  Score=117.45  Aligned_cols=136  Identities=19%  Similarity=0.229  Sum_probs=96.3

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          246 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      ..| ++++.|.++.+.++..+...++..++.++.|+++||+++|+.     +.... .+.++  ..+.....+....+..
T Consensus        49 ~~p-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-----~~~~~-~~~~~--~~~~~~~~~~~~~~~~  119 (438)
T TIGR00712        49 AMP-YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-----LPAGL-ILSAA--VMLLMGFVPWATSSIA  119 (438)
T ss_pred             hhH-HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-----hHHHH-HHHHH--HHHHHhccccccchHH
Confidence            345 444569999999999999999999999999999999998852     22211 11111  1111111111122334


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      .+.+..++.|++.+...+ .....+.|.+|+++|++++|+.+....+++.++|++.+...+...+|
T Consensus       120 ~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w  184 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW  184 (438)
T ss_pred             HHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence            445566777888887776 67788889999999999999999999999999999888766543455

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.29  E-value=3.2e-10  Score=100.69  Aligned_cols=150  Identities=14%  Similarity=0.026  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      ||..+..........+ ..+.++..-|.+++.+|.|.+|...+.++..++..+ .++.|.+.||+|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4555555555544444 456788889999999999999999999999999986 58899999999999999999999999


Q ss_pred             HHHHHHhh-------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           84 ATFLVAFS-------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        84 ~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      +..+...+       +++|.+.+..++.|.+.+....++.....+.+| ++||.+.|+.-...+++..+-..+...+...
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            98887764       367888888888888888877777777778897 4699999999999999998888877777654

>TIGR00895 2A0115 benzoate transport

Probab=99.29  E-value=1.7e-10  Score=113.34  Aligned_cols=145  Identities=14%  Similarity=0.045  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   88 (522)
                      ..+.+..+.............|.+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+....+......++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVG  332 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555666788889999999999999999999999999999999999999955544444443333333


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           89 AFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      ....+.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus       333 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       333 STLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33567777788889999999999999999999999999999999999999999999999999875

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=2.6e-10  Score=111.95  Aligned_cols=143  Identities=11%  Similarity=0.159  Sum_probs=123.0

Q ss_pred             CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           37 HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQ  116 (522)
Q Consensus        37 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  116 (522)
                      +.+....|.+.++..+...++.++.|++.||+|+|+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999998888888878888999889999999998877776777


Q ss_pred             HHHhhccCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          117 SLVADSTDDSNRGVAFGW-LQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       117 ~~i~~~~~~~~r~~~~~~-~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      .++.+..+++.++...+. .+....+|.++++.++|++.+.     .||+.+|.+.+++.++..+...+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-----IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHH
Confidence            778887877777776665 6688999999999999999987     89999999999888877766544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.28  E-value=8.2e-10  Score=108.86  Aligned_cols=155  Identities=17%  Similarity=0.082  Sum_probs=119.1

Q ss_pred             hhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----hhHHHHH
Q 009914           25 LPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS-----STFAQVA   98 (522)
Q Consensus        25 ~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~   98 (522)
                      .....|.+ .+++|.++.+.++......++..++.++.|++.||+++|+.+.++.++.+++.++..+.     .+++.++
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            33344544 56789999999998888888899999999999999999999998888877777766653     2566677


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHH
Q 009914           99 ISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVV  178 (522)
Q Consensus        99 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~  178 (522)
                      +..++.|++.+...+......... ++++|++..+..+....+|..+|+.+++.+.+.     .++....+..++..++.
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-----GGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-----CchHHHHHHHHHHHHHH
Confidence            888899999888877766665443 458899999999999999999999999999876     56665555555444444


Q ss_pred             HHhhhhc
Q 009914          179 GTLVRLF  185 (522)
Q Consensus       179 ~~~~~~~  185 (522)
                      ..+...+
T Consensus       388 ~~~~~~~  394 (406)
T PRK15402        388 LLLVRIF  394 (406)
T ss_pred             HHHHHHH
Confidence            4433333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=4.3e-10  Score=111.74  Aligned_cols=139  Identities=14%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             HHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH-HHH---hhh
Q 009914           18 ERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF-LVA---FSS   92 (522)
Q Consensus        18 ~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~-~~~---~~~   92 (522)
                      ............|.+.+ .+|.+..+.+++.....++..++.+++|+++||+|||+++..+.++..+..+ ...   ..+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33444445555676654 4899999999999999999999999999999999999987776544332221 111   123


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhcc
Q 009914           93 TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLT-SNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~lg~~~g~~l~~~l~~~  156 (522)
                      ++..+.+..++.+++.+...+....++.|.+|+++|+..+++.... ..++..++|.+.+++.+.
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            4444445556667777777777778899999999999999986544 444577899999999887

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.28  E-value=2.5e-11  Score=115.27  Aligned_cols=163  Identities=12%  Similarity=0.071  Sum_probs=115.1

Q ss_pred             HHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCC
Q 009914          214 LIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPN  292 (522)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  292 (522)
                      .+....+++.++...+++....+... ...+.+++=-++++.+..+...|...+....+.++.-++.+++.+|+|+-+..
T Consensus       360 v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~  439 (618)
T KOG3762|consen  360 VLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM  439 (618)
T ss_pred             HHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee
Confidence            34444455666665554444433333 33445666667788888888888888888889999999999999999987531


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHH-
Q 009914          293 SGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES-  371 (522)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-  371 (522)
                           .    .++.+...-..++..   -.++|..+..-++-|+..+.... ...++++...||+.++++.|+...... 
T Consensus       440 -----~----lgLa~~~~Rf~~~S~---L~n~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  440 -----Y----LGLACNVGRFLYYSY---LQNPWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHG  506 (618)
T ss_pred             -----e----ehhhHHHHHHHHHHH---hcCchheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcc
Confidence                 1    111111122222221   24556677788899999998888 889999999999999999999987754 


Q ss_pred             HHhchhhHHHHHHHHHhhC
Q 009914          372 ILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       372 ~~~~i~~~~~g~l~~~~~g  390 (522)
                      +|-.+|.+++|.+.+. +|
T Consensus       507 lG~g~GslIGG~~v~~-fg  524 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVER-FG  524 (618)
T ss_pred             cCcchhhhhhhhhhee-eh
Confidence            7889999999999988 44

>PRK10054 putative transporter; Provisional

Probab=99.27  E-value=1.9e-10  Score=112.47  Aligned_cols=153  Identities=14%  Similarity=0.056  Sum_probs=125.7

Q ss_pred             HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhH
Q 009914           34 AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS-STFAQVAISRALNGIGLALVA  112 (522)
Q Consensus        34 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~  112 (522)
                      ++.+.+....+++.+...+.....+++.|++.||+++|+.+..+..+..++.+...+. ++.+.+++..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788888888888888888999999999999999999988888888777664 567777788899999999888


Q ss_pred             HHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 009914          113 PAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP  192 (522)
Q Consensus       113 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  192 (522)
                      |...+++.+..|++.|+++++..+ ...+|..+||.+++.+.++     .|....|++.++...+..++...-.++|++.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-----LPPWSLFVILALAIVAAWLLMLKGMRARPWG  390 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-----cChhhHHHHHHHHHHHHHHHHHhccccCccc
Confidence            898999999999999999988655 5668999999999999998     8888888887776666666655444555543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.27  E-value=1.1e-09  Score=107.18  Aligned_cols=150  Identities=13%  Similarity=0.065  Sum_probs=119.8

Q ss_pred             hHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009914           27 GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGI  106 (522)
Q Consensus        27 ~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  106 (522)
                      ...|.+.+++|.++.+.+.+.....++..++.++.|++.||.+++..+....+......++....++.+.+.+..++.|+
T Consensus       238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34577888899999999999999999999999999999999654443443333344444444556677888888999999


Q ss_pred             HhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhh
Q 009914          107 GLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~  182 (522)
                      +.+...+...+++.+..| +++++..+......++|..+|+.++|.+.+.     .|++..++..+++.++..+..
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-----IGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhhHHHHHHHHHHHHHHHH
Confidence            999999999999998886 5567888888889999999999999999987     899999988877665555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.26  E-value=3.4e-10  Score=110.97  Aligned_cols=162  Identities=14%  Similarity=0.163  Sum_probs=123.9

Q ss_pred             hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009914           26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALN  104 (522)
Q Consensus        26 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  104 (522)
                      ....|.+.++.+.++.+.+++.+...++......+.+++.|| ++.++.+..+.++.+++.+++++.++++.+.+..++.
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  307 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF  307 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            345677666666688889999888877776666666776664 6667777788888888888888888888888888889


Q ss_pred             HHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC-chHHHHHHHHHHHHHHHhhh
Q 009914          105 GIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG-WRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g-w~~~f~~~~~~~~i~~~~~~  183 (522)
                      +++.+...|...+++.+..|+++|++.+++.+....+|..+||.+++++.+...  ..+ ....+++.+++.++..+...
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK--ALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHH
Confidence            999888889999999999999999999999999999999999999999987621  012 35666666666555555444


Q ss_pred             hccCCC
Q 009914          184 LFANDP  189 (522)
Q Consensus       184 ~~~~~~  189 (522)
                      ...++|
T Consensus       386 ~~~~~~  391 (400)
T PRK11646        386 WQFSQK  391 (400)
T ss_pred             HHHhhc
Confidence            333333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.25  E-value=1.2e-09  Score=108.45  Aligned_cols=159  Identities=11%  Similarity=-0.041  Sum_probs=103.2

Q ss_pred             hhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH--h--hhhHHH
Q 009914           22 ESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA--F--SSTFAQ   96 (522)
Q Consensus        22 ~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~--~--~~~~~~   96 (522)
                      .+.+...+|.+ .+++|.+..+.+...++..+...++.++.|+++||+|||+.+.++.++.++......  .  .++...
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            33344455654 466899999999999988888899999999999999999987776554433332111  1  122332


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHH-HHHHHHHHHHhhhcccccCCCCchHHHHHHHHHH
Q 009914           97 VAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNI-GSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLIS  175 (522)
Q Consensus        97 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-g~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~  175 (522)
                      .+..-.+.+++.+...+....+++|++|++.|+.++|+.+...++ .....|.+.+.+...     ..|...++..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-----g~~~~~~~~~~~~~  413 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-----GMETAFFWYVTLMA  413 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Confidence            222222233333444455678889999999999999998876554 344577777755432     33666666666666


Q ss_pred             HHHHHhhhhc
Q 009914          176 VVVGTLVRLF  185 (522)
Q Consensus       176 ~i~~~~~~~~  185 (522)
                      ++..+..+++
T Consensus       414 ~i~~~~~~~l  423 (432)
T PRK10406        414 VVAFLVSLML  423 (432)
T ss_pred             HHHHHHHHHh
Confidence            6555555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.24  E-value=1.6e-09  Score=106.59  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=109.0

Q ss_pred             HHHHHHhcCCChhhhHHHHHHHH-HHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHHH-
Q 009914           29 YKEVGAALHTDPTGLGSLTLFRS-IVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV---AFS-STFAQVAISRA-  102 (522)
Q Consensus        29 ~~~~~~~~g~s~~~~g~~~s~~~-~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~-  102 (522)
                      .+.+.+++|.++.++|++.+... ++..++.+++|++.||+|+|+.+..+..+.++..+.+   ++. ++.+.+++.-+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            45677789999999999986654 5688899999999999999998877776655554333   343 35555555543 


Q ss_pred             ---HHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHH
Q 009914          103 ---LNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVG  179 (522)
Q Consensus       103 ---l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~  179 (522)
                         ..|++.+...+....++.+.+|.+    ..++.....++|.++++.+++.+.+.     .||+..|.+.++++++..
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~~~~~  383 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEA-----YGWPGFYLMTVVIALPGL  383 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHH
Confidence               445555666666666777666644    44566666678887777789999988     899999999998888876


Q ss_pred             HhhhhccC
Q 009914          180 TLVRLFAN  187 (522)
Q Consensus       180 ~~~~~~~~  187 (522)
                      ++.+..++
T Consensus       384 ~~~~~~~~  391 (402)
T PRK11902        384 ALLWLMRG  391 (402)
T ss_pred             HHHHHHhh
Confidence            66655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.24  E-value=3.5e-10  Score=114.53  Aligned_cols=166  Identities=13%  Similarity=0.034  Sum_probs=108.9

Q ss_pred             HhhhhhhHHHHHHHhcCCChhhhHH------------HHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 009914           21 DESLLPGVYKEVGAALHTDPTGLGS------------LTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus        21 ~~~~~~~~~~~~~~~~g~s~~~~g~------------~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   88 (522)
                      ..+......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++..+.+++.++.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            3333444567777788876543211            2233445666688899999999999999988887777766655


Q ss_pred             Hhhhh----HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----
Q 009914           89 AFSST----FAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM-----  159 (522)
Q Consensus        89 ~~~~~----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~-----  159 (522)
                      ++..+    ...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+....     
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (502)
T TIGR00887       383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP  462 (502)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence            54321    111111111112222233455667789999999999999999999999999999999988763100     


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      ...++...|++.++..++..+..+++|
T Consensus       463 ~~~~~~~~~~i~~~~~~~~~i~~~~lp  489 (502)
T TIGR00887       463 TGIWMGHVLEIFALFMFLGILFTLLIP  489 (502)
T ss_pred             ccccchHHHHHHHHHHHHHHHHheEec
Confidence            013456788888887777666554444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=1.8e-09  Score=104.49  Aligned_cols=182  Identities=14%  Similarity=0.211  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcC-CChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALH-TDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      +....+..++.+..........+.+.++.| .+....|.+.++..+.-.+.-.+.+++..|+|.|+++.++.+.+++=..
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~  288 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            334445555666666666666777777888 6778888888888888889999999999999999999999999999888


Q ss_pred             HHHhh-hhHHHHH----HHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhhcccc-c
Q 009914           87 LVAFS-STFAQVA----ISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQL-TSNIGSLVGGLFSVVMAPMTF-M  159 (522)
Q Consensus        87 ~~~~~-~~~~~l~----~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lg~~~g~~l~~~l~~~~~-~  159 (522)
                      +++.. ++.+...    +...+.|+..+....+...++.+..|++.|+++.+++.. ..++|..+|..++|++.+... .
T Consensus       289 l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  289 LYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence            88887 4544433    335679999999999999999999999999999999876 468999999999999998721 1


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCC
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDP  189 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~  189 (522)
                      ....|...+.+.+++.++..++.+++.|++
T Consensus       369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  369 GMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            123456667777777767666666655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=5.3e-10  Score=103.93  Aligned_cols=156  Identities=21%  Similarity=0.168  Sum_probs=131.3

Q ss_pred             hhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009914           26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNG  105 (522)
Q Consensus        26 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  105 (522)
                      .....+-..++|++..++.++.....+..+++++++|++.||+|.|+++..+++++.+.++...+...-..+.++-.+.|
T Consensus       273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g  352 (438)
T COG2270         273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVG  352 (438)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            33334445599999999999999999999999999999999999999999999999888887777777677778889999


Q ss_pred             HHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 009914          106 IGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLF  185 (522)
Q Consensus       106 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~  185 (522)
                      ++.|..+..+.++..+..|++|-++.+|++......+..+||.+-+.+.+.+    .+-|..+....++..+..++....
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----g~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----GSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhhHhhEEee
Confidence            9999999999999999999999999999999999999999999999988763    446666666655544444443333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.22  E-value=3.7e-10  Score=111.17  Aligned_cols=142  Identities=13%  Similarity=0.168  Sum_probs=100.7

Q ss_pred             ccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHh-hhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914          237 GSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLSAIPLAALLL  314 (522)
Q Consensus       237 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (522)
                      ....|+...++|.|+. ++|++..+++.+.........++.+++|+++||+ |+|+     .+...... ..+  ... .
T Consensus        22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-----~iliG~il-~~l--g~l-l   92 (493)
T PRK15462         22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-----AVMLGALL-MAI--GHV-V   92 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-----HHHHHHHH-HHH--HHH-H
Confidence            3345677789999986 5899999999999999999999999999999999 9884     33222111 111  111 1


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc--hhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          315 LVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +....  .......+...+..++.+...+ ...+++.|.+|++  .|.++.++.....++|+.++|.+.|++.+. .||
T Consensus        93 l~~~~--~~~~~~~l~l~li~iG~G~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw  167 (493)
T PRK15462         93 LGASE--IHPSFLYLSLAIIVCGYGLFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSW  167 (493)
T ss_pred             HHHhh--cchhHHHHHHHHHHHhcccccc-cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hCh
Confidence            11111  1111122333444455565556 6788999999875  699999999999999999999999999887 566

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.21  E-value=9e-07  Score=86.56  Aligned_cols=278  Identities=10%  Similarity=-0.003  Sum_probs=163.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCC-----ChhhhHHHHHHHHHHHHhh-hhhHHHHHHHhchhHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHT-----DPTGLGSLTLFRSIVQASC-YPIAAYLAIRHNRAHVIALGA   78 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~s~~~~~~~i~-~~~~G~l~Dr~grr~~l~~~~   78 (522)
                      ++.++...+..|+..+.+++.    -.+.+.+..     +.+.+.++-+...+..++. .++.+++++|++|++++-+..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            344555555556555555444    445555544     3467889988888877776 899999999999999987777


Q ss_pred             HHHHHHHHHHHhh--h-----------------------------hHHHHHHHHHHHHHHhhhhHH-HHHHHHhhccCCC
Q 009914           79 FLWAAATFLVAFS--S-----------------------------TFAQVAISRALNGIGLALVAP-AIQSLVADSTDDS  126 (522)
Q Consensus        79 ~~~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~  126 (522)
                      ..+.+..+++++.  |                             +.|...+..+...+....... ...+++.|.++.+
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~  161 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID  161 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            7666666665554  1                             123334455555565555555 7789999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccCCCCch----HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 009914          127 NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT---FMGIPGWR----ISFHIVGLISVVVGTLVRLFANDPHFPDGGTANS  199 (522)
Q Consensus       127 ~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~---~~~~~gw~----~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  199 (522)
                      |-.|.+++...+.++|.++++.+..++.+..   ......|.    ..+.+.++..++...+.+++.+.....+...+.+
T Consensus       162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  241 (472)
T TIGR00769       162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh
Confidence            9999999999999999999999988876321   01113442    3334444444444444333332221111000000


Q ss_pred             cccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHHHH-HHHHHHHhCCChhH----HHHHHHHHHHHHhc
Q 009914          200 DQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSF-AAMWLELTGFSHEK----TAFLMALFVIASSL  274 (522)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~----~~~~~~~~~~~~~~  274 (522)
                      +.+++++..   ....+..+.++++|.++.+....+++......... .-..+++..-++.+    .|.+....++..++
T Consensus       242 ~~~~k~k~k---~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~  318 (472)
T TIGR00769       242 LKEKKVKPK---MSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVT  318 (472)
T ss_pred             hccccCCCC---CCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            000010111   23456667788888877766655555443222211 12222332233332    23344445556666


Q ss_pred             cchhhhhhhhHhhhc
Q 009914          275 GGLFGGRMGDFLSAR  289 (522)
Q Consensus       275 ~~~~~g~l~~~~~~~  289 (522)
                      ..++.+++.+|+|-+
T Consensus       319 ~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       319 MMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHhhHH
Confidence            666778999998877

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.3e-10  Score=113.59  Aligned_cols=177  Identities=16%  Similarity=0.198  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc--hhHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN--RAHVIALGAFLWAA   83 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g--rr~~l~~~~~~~~~   83 (522)
                      +.++.+.+...+..+........+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++++..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            5677788888888888899999999999999999999999999999999999999999999988  45567788888888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.+.+++.++++.++..-++.|+..|.........+.|..+.++...+.|+...+.+++.++||++++.+.+..    .+
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t----g~  453 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT----GN  453 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc----CC
Confidence            88899999999999999999999999999888889999999999999999999999999999999999888762    34


Q ss_pred             chHHHHHHHHHHHHHHHhhhhcc
Q 009914          164 WRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       164 w~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      |...|+..++..++.....+..+
T Consensus       454 Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  454 YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeehhhcChHHHHHHHHHHHhH
Confidence            99999999998888877666655

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.21  E-value=1.7e-09  Score=107.85  Aligned_cols=147  Identities=18%  Similarity=0.236  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHh-cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      ..+.+..++............+.+.++ ++ ++.+.+++.++..++..++.+++++++||+|+|+++..+.++.+++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~  303 (437)
T TIGR00792       225 LILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLI  303 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433 34 5667788888889999999999999999999999999998888888777


Q ss_pred             HHhh-hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           88 VAFS-STFAQVAISRALNGIGLALVAPAIQSLVADSTD-------DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        88 ~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ..+. ++.+.+++..++.|++.+...+...++++|..+       ++++|..+++.+....+|..+++.+.+.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       304 FFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665 356677778888999999999999999998865       45579999999999999999999999998865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.21  E-value=5.1e-10  Score=109.52  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          245 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      ...|.+.+++|.+..+.+++.+...++..++.++.|++.||+++|+     .+..... +..+...... .     .++.
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----~~~~~~~-~~~~~~~~~~-~-----~~~~   93 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-----VLLLGLF-IFALSSLGLA-L-----SNNI   93 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHHHHHH-HHHHHHHHHH-H-----HccH
Confidence            3467777889999999999999999999999999999999999984     3332211 1111111111 1     1234


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +.+.+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+....++..++|.+.+.+.+. .+|
T Consensus        94 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~  158 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSW  158 (385)
T ss_pred             HHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCH
Confidence            4466677788888887777 7889999999999999999999999999999999999999887 565

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.21  E-value=2e-09  Score=105.12  Aligned_cols=153  Identities=15%  Similarity=0.134  Sum_probs=112.4

Q ss_pred             hHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 009914           27 GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF-SSTFAQVAISRALNG  105 (522)
Q Consensus        27 ~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G  105 (522)
                      ...|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+
T Consensus       221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3445666778999999999999999999999999999999999999998888887877765543 455555566666666


Q ss_pred             HHhhhhHHHHHH-HHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          106 IGLALVAPAIQS-LVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       106 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      ++.....+.... ...+..+++.++..  ..+....+|..+||.+++++.+..    .+|+..+.+.+++.++.......
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG----LAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc----cCcchHHHHHHHHHHHHHHHHHH
Confidence            665544444443 33443344444443  346678899999999999998742    68999999887776666554444


Q ss_pred             c
Q 009914          185 F  185 (522)
Q Consensus       185 ~  185 (522)
                      .
T Consensus       375 ~  375 (382)
T PRK10091        375 Y  375 (382)
T ss_pred             H
Confidence            3

>TIGR00898 2A0119 cation transport protein

Probab=99.20  E-value=9.1e-10  Score=111.89  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=115.2

Q ss_pred             HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHhh
Q 009914           32 VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTF--AQVAISRALNGIGLA  109 (522)
Q Consensus        32 ~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~  109 (522)
                      ....++.+..   +......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.+
T Consensus       349 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  425 (505)
T TIGR00898       349 DLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT  425 (505)
T ss_pred             cccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            3344555433   33344456677788899999999999999999999988888887776643  445556667777777


Q ss_pred             hhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          110 LVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      ...+....+..|.+|++.|+.++|+.+....+|.+++|.+.+ +..      .++..++++.++..++..++.+++|+
T Consensus       426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~lpe  496 (505)
T TIGR00898       426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------KWLFLPLVLFGGLALLAGILTLFLPE  496 (505)
T ss_pred             HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH------HHHhhHHHHHHHHHHHHHHHHHcCcC
Confidence            888888899999999999999999999999999999999988 443      56778888888888888777776664

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.20  E-value=3.9e-10  Score=104.80  Aligned_cols=178  Identities=13%  Similarity=0.060  Sum_probs=141.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      .+..+.+++.++...-....++..+| ++.++|+.++.+.|.+...+.+...+..+.+|+++||+|.+|++.+....+++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~  296 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMAL  296 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHH
Confidence            34566677777777777777777777 56778999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhh-------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           84 ATFLVAFS-------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        84 ~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      +..+..+.       ++....+..-+..++..|........++...+|+ +-+.+.|+..+..++|...-|..-+...+.
T Consensus       297 ~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~  375 (417)
T COG2223         297 AAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDL  375 (417)
T ss_pred             HHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHh
Confidence            88777765       3444444444444555555555666888888864 679999999999999998888888887776


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          157 TFMGIPGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       157 ~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      .    ..+...|++...+.+++.++.+....
T Consensus       376 t----g~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         376 T----GSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             c----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    34999999999999888887776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.20  E-value=9.1e-10  Score=104.65  Aligned_cols=149  Identities=13%  Similarity=0.176  Sum_probs=130.3

Q ss_pred             CCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHH
Q 009914           37 HTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQ  116 (522)
Q Consensus        37 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  116 (522)
                      +.+....|.+.++..+.-++...+..++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+-.+....+..
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCC
Q 009914          117 SLVADSTDDSNRGVAFGW-LQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPH  190 (522)
Q Consensus       117 ~~i~~~~~~~~r~~~~~~-~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  190 (522)
                      .++++.+|++-.++...+ .+...++|.++.+.++|.+.+.     .|.+..|++.+.+.++..++..+..++++
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-----~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-----IGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-----cCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            999999998887778777 4688899999999999999998     89999999999998888888887655433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.20  E-value=4.9e-10  Score=111.99  Aligned_cols=151  Identities=14%  Similarity=0.153  Sum_probs=109.9

Q ss_pred             HHHHHHHhhhc-cchhHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHhccchhhhhhhhH-hhhcCCCchhHHHHHH
Q 009914          227 FQIIVAQGVTG-SFPWSALSFAAMWLEL---TGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQI  301 (522)
Q Consensus       227 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  301 (522)
                      ++.+....+.. ...++...++|.|+++   +|++..+++.+.+...++..++.+++|+++|| +|+|+     .+....
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-----~l~~~~   86 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-----TMVLGG   86 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-----HHHHHH
Confidence            33444444443 3356777889999974   79999999999999999999999999999999 79984     333222


Q ss_pred             HHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcch---hHHHHHHHHHHHHHHhchhh
Q 009914          302 SSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS---RTSVYAMDRSFESILSSFAP  378 (522)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~  378 (522)
                      . +.++.  . .....  . ++.+.+.+...+.|++.+...+ ...+++.+.+|+++   |+++.++.+...++|..++|
T Consensus        87 ~-~~~~g--~-~~~~~--~-~~~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        87 I-VLMLG--H-FMLAM--S-IYPDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             H-HHHHH--H-HHHHh--c-ccHhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            1 11111  1 11111  1 2233345566678888888777 78889999998654   88899999999999999999


Q ss_pred             HHHHHHHHHhhCc
Q 009914          379 PVVGILAQHVYGF  391 (522)
Q Consensus       379 ~~~g~l~~~~~g~  391 (522)
                      .+.|++.+. .||
T Consensus       159 ~l~g~l~~~-~g~  170 (475)
T TIGR00924       159 LLAGVIAEN-YGY  170 (475)
T ss_pred             HHHHHHHHh-cCh
Confidence            999999987 565

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2.9e-09  Score=96.76  Aligned_cols=369  Identities=12%  Similarity=0.074  Sum_probs=210.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHH-----HhchhHH-HHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI-----RHNRAHV-IALG   77 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D-----r~grr~~-l~~~   77 (522)
                      .++.+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++.+....++ ..+. ..++|.++.|     |+||||. ++-.
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~s-LKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPFS-LKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHHH-HHHHHHhhhHHHHHHhhccccceeeeh
Confidence            45667788888889988888888 88999999999998887644332 3333 3678899999     9999886 3334


Q ss_pred             HHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHH
Q 009914           78 AFLWAAATFLVAFS-----------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVG  146 (522)
Q Consensus        78 ~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g  146 (522)
                      ..+.+..+++.+.-           ++...+....++.-+..+.-..+...+.-.+..+++.+-+......+...|..++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            44433333333321           2333343445566666777788888888888888888877777777777776666


Q ss_pred             HHHHHhhhccc---------c--cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHH
Q 009914          147 GLFSVVMAPMT---------F--MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLI  215 (522)
Q Consensus       147 ~~l~~~l~~~~---------~--~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (522)
                      ..+--.+...+         +  .+...-..-.++.|.+.++...+..+..++++....+          +....+++..
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~----------e~~~~i~~~y  255 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE----------ELELGIHESY  255 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh----------hhhcCHHHHH
Confidence            55433332210         0  0111112233445555556655555555444332111          1111235566


Q ss_pred             HHhhhhhcchhHHHHHHHhhhccchh-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCch
Q 009914          216 QEAKSVIKIPSFQIIVAQGVTGSFPW-SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSG  294 (522)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  294 (522)
                      +-.+.+++-|....+.......=..+ +.....+.-+-+.|++..+.+.+..+..-.+++.....|++..+..+-.+..+
T Consensus       256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lk  335 (510)
T KOG3574|consen  256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLK  335 (510)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHH
Confidence            66667777776666555444444433 33345666677899999887766644333444444433333321111000000


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCC--------chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHH
Q 009914          295 RIILAQISSLSAIPLAALLLLVLPDDP--------STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD  366 (522)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  366 (522)
                      +...-..   .+.....+.+ ..+...        ....+.+....+.+...-..+. ..++..+++.||...|+.+.+.
T Consensus       336 a~~~R~~---~~~~~t~Lv~-~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv-~~maf~aqisdp~iggTymTlL  410 (510)
T KOG3574|consen  336 AVPYRLG---GGLVQTALVW-WTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV-SGMAFHAQISDPAIGGTYMTLL  410 (510)
T ss_pred             hhhHHHH---HHHHHHHHHh-hhcccccCCCceeechHHHHHHHHHHhhhHHHHHHH-HHHHHHhhcCCcccCccHHHHH
Confidence            1111111   1111111111 111111        1111122223333433333334 4678888999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          367 RSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       367 ~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      |+..++|+..-..+..++.|. .++
T Consensus       411 NTLsnLGg~wp~tv~l~l~D~-ltv  434 (510)
T KOG3574|consen  411 NTLSNLGGNWPGTVALWLADG-LTV  434 (510)
T ss_pred             HHHHHhcCCcHHHHHHHhccc-Cce
Confidence            999999999999999999998 554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=8.6e-10  Score=110.62  Aligned_cols=153  Identities=12%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             hhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchh-------HHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009914           26 PGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRA-------HVIALGAFLWAAATFLVAFSSTFAQV   97 (522)
Q Consensus        26 ~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l   97 (522)
                      ...+| ++.+++|.+..+.+.+.++..++..++.+++|+++||++||       ..+.+..++.++..++....++.+..
T Consensus       272 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~  351 (476)
T PLN00028        272 DNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAA  351 (476)
T ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            33344 44667899999999999999999999999999999999875       22333333333334444555566655


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHH
Q 009914           98 AISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVV  177 (522)
Q Consensus        98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i  177 (522)
                      .+..++.+++.+...+...+++.+.. +++++...|+...+..+|..+++.+.+ ....     .+|+..|++.+++.++
T Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~-----~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        352 IVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSS-----YSTETGISLMGVMIIA  424 (476)
T ss_pred             HHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCC-----ccHhhHHHHHHHHHHH
Confidence            66666667766666666666667654 467899999987777777777766543 1112     5799999999888777


Q ss_pred             HHHhhhhc
Q 009914          178 VGTLVRLF  185 (522)
Q Consensus       178 ~~~~~~~~  185 (522)
                      ..++.++.
T Consensus       425 ~~~~~~~~  432 (476)
T PLN00028        425 CTLPVAFI  432 (476)
T ss_pred             HHHHHHhe
Confidence            76666554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.18  E-value=1.7e-09  Score=106.43  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=98.3

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          246 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      ..|.+.+++|++..+.+++.+...++..++.+..|++.||+|+|+     .+.... .+..+  ..... ..   .++.+
T Consensus        30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-----~~~~~~-~~~~~--~~~~~-~~---~~~~~   97 (412)
T TIGR02332        30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-----WIAGIM-VLWGI--ASTAT-MF---ATGPE   97 (412)
T ss_pred             HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-----HHHHHH-HHHHH--HHHHH-HH---hcCHH
Confidence            456555789999999999999999999999999999999999994     222221 11111  11111 11   12334


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      .+.+.-++.|++.+...+ ....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+
T Consensus        98 ~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        98 SLYLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466677888999988777 777889999999999999999999999999999999999875

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=4.8e-09  Score=98.62  Aligned_cols=160  Identities=16%  Similarity=0.092  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHH---hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGA---ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      .+.+..++.++............+.+.+   .+|.++.+.++..+.+..+..++.++.+++.||+|+|+.+.++..+.++
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            3444455555555445555555555554   3699999999999999999999999999999999999998888888877


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 009914           84 ATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG  163 (522)
Q Consensus        84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g  163 (522)
                      +.++....++...+ ..-++.|++.+..+|...+...+..|++ .+++.++. ....+|..++|++.|.+.+.     .|
T Consensus       221 ~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-----~g  292 (310)
T TIGR01272       221 LSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-----LG  292 (310)
T ss_pred             HHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-----cc
Confidence            77666555544333 3556889999999999999999988754 45666665 56778999999999999887     78


Q ss_pred             chHHHHHHHHH
Q 009914          164 WRISFHIVGLI  174 (522)
Q Consensus       164 w~~~f~~~~~~  174 (522)
                      .+..|++..+.
T Consensus       293 ~~~a~~v~~~~  303 (310)
T TIGR01272       293 IQLAFALPVPC  303 (310)
T ss_pred             chHHHHHHHHH
Confidence            88888755443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=1.2e-09  Score=122.38  Aligned_cols=147  Identities=18%  Similarity=0.173  Sum_probs=124.6

Q ss_pred             HHHHHHHhcCCChh-hhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009914           28 VYKEVGAALHTDPT-GLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGI  106 (522)
Q Consensus        28 ~~~~~~~~~g~s~~-~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  106 (522)
                      +.+++.+.+|.+.. +.|++.+...++.+++.+++|++.||+++++.+.++.++.+++.+++.+..+.+.+++..++.|+
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33455677899999 99999999999999999999999999999999988888888888888888888888899999999


Q ss_pred             HhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHH
Q 009914          107 GLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVV  178 (522)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~  178 (522)
                      +.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+....    .++...|++.+.+.++.
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG----LSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888887765421    45666666655544433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.16  E-value=3.3e-09  Score=103.76  Aligned_cols=147  Identities=16%  Similarity=0.061  Sum_probs=116.5

Q ss_pred             HHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 009914           30 KEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLA  109 (522)
Q Consensus        30 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  109 (522)
                      +.+.+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.. .++..++..+.++++...+..++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            34566789999999999999999999999999999999999988877753 44445555666777777788889999999


Q ss_pred             hhHHHHHHHHhhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          110 LVAPAIQSLVADSTDDSN-RGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      ...+...+.+.+..|++. ++++.++.+...++|..++..+.+.+..      .|-+..+++.++..++...+.+
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK------LGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHH
Confidence            888888899888766554 7999999999999999999999987754      5666666665554444444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.15  E-value=6e-08  Score=99.20  Aligned_cols=161  Identities=12%  Similarity=0.108  Sum_probs=129.3

Q ss_pred             hhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhhh--------H
Q 009914           24 LLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIALGAFLWAAATFLVAFSST--------F   94 (522)
Q Consensus        24 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~--------~   94 (522)
                      +...+..++.+.+|.+.+....+...+....-+...++|.++|+ +|+++.++++.++..++.++.++...        .
T Consensus         6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            44555667777899999999999988888888999999999996 79999999999999999888876421        2


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC---chhHHHHHHHHHHHHHHHHHHHHHHhhhccc-c-cCCCCchHHHH
Q 009914           95 AQVAISRALNGIGLALVAPAIQSLVADSTDDS---NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-F-MGIPGWRISFH  169 (522)
Q Consensus        95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~-~~~~gw~~~f~  169 (522)
                      ...+++-.+.++|.|+.-|...+...|.++++   +|...+.++..+.++|.++++.+..++.+.. . ....+|...|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            33567778888999999999999999999754   3677889999999999999999998886331 0 01147999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 009914          170 IVGLISVVVGTLVRL  184 (522)
Q Consensus       170 ~~~~~~~i~~~~~~~  184 (522)
                      +.++..++..++...
T Consensus       166 i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       166 VPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998887777666544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.15  E-value=2e-09  Score=108.33  Aligned_cols=152  Identities=17%  Similarity=0.172  Sum_probs=102.5

Q ss_pred             HHHHHHHhhhccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhH-hhhcCCCchhHHHHHHHH
Q 009914          227 FQIIVAQGVTGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQISS  303 (522)
Q Consensus       227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~  303 (522)
                      ++..+...+.... .+....+++.|++ ++|++..+++..............+++|+++|| +|+|+     .+..... 
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~-----~~~~g~~-   96 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR-----VIMLGAI-   96 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HHHHHHH-
Confidence            4444444333333 5677788999985 699999988888777665555556789999999 59983     3332221 


Q ss_pred             HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcch--hHHHHHHHHHHHHHHhchhhHHH
Q 009914          304 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS--RTSVYAMDRSFESILSSFAPPVV  381 (522)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~~~~  381 (522)
                      +..+  .... ....  ......+.+...+.|++.+...+ ...+++.+.+|+++  +..+.++.+...++|..++|.+.
T Consensus        97 ~~~i--g~~l-~~~~--~~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~  170 (500)
T PRK09584         97 VLAI--GYAL-VAWS--GHDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT  170 (500)
T ss_pred             HHHH--HHHH-HHHh--cccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence            1111  1111 1111  12233344566677888887777 77789999997643  45678888999999999999999


Q ss_pred             HHHHHHhhCc
Q 009914          382 GILAQHVYGF  391 (522)
Q Consensus       382 g~l~~~~~g~  391 (522)
                      |++.+. .||
T Consensus       171 g~l~~~-~g~  179 (500)
T PRK09584        171 PWLAAK-YGW  179 (500)
T ss_pred             HHHHHh-hCH
Confidence            999987 676

>TIGR00896 CynX cyanate transporter

Probab=99.14  E-value=2.1e-09  Score=103.88  Aligned_cols=144  Identities=17%  Similarity=0.105  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-chhHHHHHHHHHHHHHHHHHHh
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-NRAHVIALGAFLWAAATFLVAF   90 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~   90 (522)
                      .+..++...........+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+.++.+++.+.+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       203 TVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            333334444444455667877778999999999999999999999999999999999 5666777888888777777766


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           91 SSTFAQVAISRALNGIGLALVAPAIQSLVADSTD-DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        91 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      .++..... ..++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+.
T Consensus       283 ~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       283 APMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             hhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65433322 4567899999999888777765554 46678889999999999999999999999876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.13  E-value=4.7e-08  Score=92.49  Aligned_cols=316  Identities=15%  Similarity=0.048  Sum_probs=187.1

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 009914           43 LGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADS  122 (522)
Q Consensus        43 ~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  122 (522)
                      .+.+.-+..+...+..+.+-++.+|+..+.=+....++++++.++.+++++.+.=+++-++.+++.|........+.. .
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            355777777888888888999999988665566666788889999999999998899999999999988888777755 5


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC---
Q 009914          123 TDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANS---  199 (522)
Q Consensus       123 ~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---  199 (522)
                      +++    ...+-+..+.+.++++|+..-..+....    ...|..+++...+.++..+..++..+.|+......+.+   
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g----~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~  211 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLG----LSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED  211 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence            553    3577788888888888887766555421    45577888877776666655555444332211111000   


Q ss_pred             --cc---ccc-------chhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHHH-HHHHHH-H-HhCCChhHHHHH
Q 009914          200 --DQ---VSS-------KSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALS-FAAMWL-E-LTGFSHEKTAFL  264 (522)
Q Consensus       200 --~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~g~~~~~~~~~  264 (522)
                        ++   ..+       .......++.++..+.     .++.++-....+..-|.+.. ..|... . ...-...+..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~-----Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y  286 (402)
T PF02487_consen  212 EAEDDLLESETSESKPDSSSKLSFKEKLKRLKP-----LLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWY  286 (402)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHH
Confidence              00   000       0001111111222121     12222222222223233322 344433 1 222234566777


Q ss_pred             HHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCC
Q 009914          265 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA  344 (522)
Q Consensus       265 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (522)
                      ...+.++.++++--...+  |+  |     ++.+..+...+-+.  ...+-.+....++.++.++.++..|+..|..+. 
T Consensus       287 ~~~YQ~GVFISRSS~~~~--ri--r-----~lwils~LQ~~nl~--~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV-  354 (402)
T PF02487_consen  287 QLLYQLGVFISRSSLPFF--RI--R-----RLWILSLLQVINLV--FLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV-  354 (402)
T ss_pred             HHHHHHHHhhhhcceeee--eh--h-----hHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH-
Confidence            778888888776544332  22  2     12222222221111  111111111123455666788888988888888 


Q ss_pred             cchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          345 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      .....+.+..|+++|-.++|.......+|..++..++=++
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6777888888999999999999988887777766655443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.12  E-value=1.8e-09  Score=108.04  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             ccchhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhH-hhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009914          237 GSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQISSLSAIPLAALLL  314 (522)
Q Consensus       237 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (522)
                      ....|+...+++.|++ ++|++..+++++...+.....+..+++|+++|| +|||+     .+.........   ..+..
T Consensus        27 r~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-----~~~~g~~~~~~---g~~~~   98 (489)
T PRK10207         27 RFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-----TIVLGAIVLAI---GYFMT   98 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-----HHHHHHHHHHH---HHHHH
Confidence            3445677788888886 699999999998888887778888899999999 99994     33332222111   11111


Q ss_pred             HhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc--hhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          315 LVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      . ..  ......+.+...+.|++.+...+ ...+++.|.+|++  +|++++++.....++|..++|.++|++.++ .||
T Consensus        99 ~-~~--~~~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~gw  172 (489)
T PRK10207         99 G-MS--LLKPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FGY  172 (489)
T ss_pred             H-Hh--ccchhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hCh
Confidence            1 11  11122244566777888888888 7889999999877  457789999999999999999999999998 576

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.12  E-value=5e-09  Score=102.12  Aligned_cols=175  Identities=11%  Similarity=0.051  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      .+.+++.++..+.....+...+|.+.++ ..+.........+..+...+..|++|+++||+|+|+++.++.+...++...
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~  332 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL  332 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            4555556666555555566666666544 223333333345566788889999999999999999999888777666543


Q ss_pred             HH-hhh-----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC---------------------CchhHHHHHHHHHHH
Q 009914           88 VA-FSS-----TFAQVAISRALNGIGLALVAPAIQSLVADSTDD---------------------SNRGVAFGWLQLTSN  140 (522)
Q Consensus        88 ~~-~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~  140 (522)
                      .. ..+     +++.+.+..+...++.|....+...++.+.+|+                     ++-|.+.|+..+...
T Consensus       333 ~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~  412 (462)
T PRK15034        333 LFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGA  412 (462)
T ss_pred             HHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHH
Confidence            22 222     456666665555566666677777888888874                     156778899999999


Q ss_pred             HHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 009914          141 IGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN  187 (522)
Q Consensus       141 lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  187 (522)
                      +|..+-|.+-+...+..    .++...|+...+..+++.++.+....
T Consensus       413 ~Ggf~~p~~~g~~~~~~----g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        413 VGGFFIPQAFGMSLNMT----GSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             cccchhhHHHHHHHHHc----CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98888887766666542    56888999999988888888877543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.11  E-value=1.8e-09  Score=120.61  Aligned_cols=168  Identities=11%  Similarity=0.009  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      ++.+.++.++..+....+...+|.+ .+.+|.++.+.|++.+.+.++.++++++.|+++||.++++.+..+.++.+++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  306 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL  306 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence            3344444444444444444445554 456899999999999999999999999999999988877776666666555554


Q ss_pred             HHHhh--------------------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHH
Q 009914           87 LVAFS--------------------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVG  146 (522)
Q Consensus        87 ~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g  146 (522)
                      .+.+.                    ++.+.+++..++.|++.+...+...+++.+.+|++.||+++|..+....+|..++
T Consensus       307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig  386 (1140)
T PRK06814        307 DLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAG  386 (1140)
T ss_pred             HHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHH
Confidence            44432                    6677788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcccccCCCCchHHHHHHHHHHHHHH
Q 009914          147 GLFSVVMAPMTFMGIPGWRISFHIVGLISVVVG  179 (522)
Q Consensus       147 ~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~  179 (522)
                      +++.+.+....    .++...|++.+++.++..
T Consensus       387 ~~~~g~l~~~~----~~~~~~~~~~~~~~~~~~  415 (1140)
T PRK06814        387 TIILALLQALG----FSIPWIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHHHHHhc----cCHHHHHHHHHHHHHHHH
Confidence            99999887421    566777766655444443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.11  E-value=3.5e-09  Score=102.42  Aligned_cols=130  Identities=8%  Similarity=-0.011  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHH-HHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRS-IVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVA   89 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~-~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   89 (522)
                      +.+..++............|.+.+++|.++.+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       214 LLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444555666666669999999998887765 57788999999999999999998888888777766555


Q ss_pred             hh-----------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 009914           90 FS-----------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSN  140 (522)
Q Consensus        90 ~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  140 (522)
                      +.           ++.+.+..+.++.+++.+...+...+++.+.+|+++|++.+++.+...+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       294 WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            43           3457778888999999999999999999999999999999999887654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.11  E-value=3.3e-09  Score=107.09  Aligned_cols=142  Identities=17%  Similarity=0.046  Sum_probs=117.1

Q ss_pred             HHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--
Q 009914           15 GIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS--   91 (522)
Q Consensus        15 ~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--   91 (522)
                      .+.............| +++..+|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.+++.+.  
T Consensus       268 ~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~  347 (495)
T PRK14995        268 AMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF  347 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            3333333333344445 4556689999999999999999999999999999999999999998888888777665443  


Q ss_pred             -hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           92 -STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        92 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                       ++.+...+..++.|++.+...+.....+.+..|+++++.+.++.+...++|..+|+.+.+.+.+.
T Consensus       348 ~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        348 STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             35666677889999999999998999999999999999999999999999999999999988653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.10  E-value=3.2e-09  Score=107.41  Aligned_cols=145  Identities=12%  Similarity=0.134  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Q 009914           12 NLAGIMERADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF   90 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   90 (522)
                      .+..+...+........+|.+. +.+|.++.+.|++.....++..++.++.|++.||+|||+.+.++..+.+++..++.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~  340 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF  340 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444444445566554 558999999999999999999999999999999999999999999888888877763


Q ss_pred             --h--hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           91 --S--STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        91 --~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                        .  .+++.+....++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.+.
T Consensus       341 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       341 TFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1  35667777788999999998888888888889999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.09  E-value=2.1e-08  Score=98.37  Aligned_cols=135  Identities=13%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 009914           31 EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLAL  110 (522)
Q Consensus        31 ~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  110 (522)
                      .+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+..+..-.+.+.+.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999998888888877776655444444444444444


Q ss_pred             hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHH
Q 009914          111 VAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLIS  175 (522)
Q Consensus       111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~  175 (522)
                      ..+..  +..+..|.++|+   +.......++..+|+.+++++.+.     .|+.....+.+.+.
T Consensus       309 ~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~-----~g~~~~~~~~~~~~  363 (392)
T PRK10473        309 GFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAV-----LGISAWNMLIGILI  363 (392)
T ss_pred             HhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHH
Confidence            33332  333344544443   444455567777778888777766     56665455444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1e-08  Score=89.64  Aligned_cols=151  Identities=16%  Similarity=0.140  Sum_probs=113.2

Q ss_pred             HHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 009914           30 KEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL-WAAATFLVAFSSTFAQVAISRALNGIGL  108 (522)
Q Consensus        30 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~  108 (522)
                      ..+++.+|+|+...+.+.+.-....++.+++.|.++||+|++.+.+.+..+ ..++-....+  +++.=+++..+.|+..
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhH
Confidence            367889999999999999999999999999999999999999876655443 3333333333  2333356667888887


Q ss_pred             hhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHH-HHHHHHHHHHhhhh
Q 009914          109 ALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHI-VGLISVVVGTLVRL  184 (522)
Q Consensus       109 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~-~~~~~~i~~~~~~~  184 (522)
                      +..-.....+++...|+++.|++.+..+...++|..+-|++++++.+..  +.+.|--+|++ .+.+++....+.+.
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~--g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD--GSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC--CchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            7777777888899999999999999999999999999999999998763  11345444444 44444444444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.08  E-value=1.3e-08  Score=98.26  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhch---hHHHH-HHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNR---AHVIA-LGAFLWA   82 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~gr---r~~l~-~~~~~~~   82 (522)
                      .++.+.+.+++.......+...+|.+.++.|.+.. .+...++..+...++   .++++||..|   |+... ...++.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a  268 (368)
T TIGR00903       193 DLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIA  268 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence            34555556666666666666778888788888764 566655555555544   4677777654   33323 2344444


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009914           83 AATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIP  162 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~  162 (522)
                      +...+.++..+....++.-.+.+++.....+...++.+|.+|++.|++++|+.+....+|.+++|++.+.+..       
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-------  341 (368)
T TIGR00903       269 AFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-------  341 (368)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-------
Confidence            4444444444444445555667777777777788999999999999999999999999999999999887762       


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhcc
Q 009914          163 GWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      +.+..|.+.++..++..+....++
T Consensus       342 ~~~~~f~~~~~~~~i~~~~~~~~~  365 (368)
T TIGR00903       342 SAEAYFTFLAILITIAFAIALLLP  365 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCC
Confidence            567778888887777776664333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.08  E-value=2.7e-09  Score=104.07  Aligned_cols=133  Identities=17%  Similarity=0.228  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          245 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      ..+|.+.+++|.+..+.+++.+...++..++.++.|++.||++||+     .+.... .+..+...... .     .++.
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~~~~-~~~~i~~~~~~-~-----~~~~   79 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-----VILGGT-LVFALAAVACA-L-----AQTI   79 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-----HHHHHH-HHHHHHHHHHH-H-----HccH
Confidence            4577888889999999999999999999999999999999999873     332221 11111111111 1     1233


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +.+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+. .+|
T Consensus        80 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~  144 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSW  144 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCh
Confidence            4456677788888887777 7788999999999999999999999999999999999999887 565

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=3.7e-10  Score=109.01  Aligned_cols=135  Identities=20%  Similarity=0.303  Sum_probs=103.3

Q ss_pred             HHHHH-HHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 009914          244 LSFAA-MWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  322 (522)
Q Consensus       244 ~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (522)
                      ....| .+.+++|.+..+.+++.+...++..++.++.|+++||+|+|+     .+.... .+.++. ..+..+.    .+
T Consensus        16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~l~~~~-~~~~~~-~~~~~~~----~~   84 (352)
T PF07690_consen   16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-----VLIIGL-LLFALG-SLLLAFA----SN   84 (352)
T ss_dssp             HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-----HHHHHH-HHHHHH-HHHHHHH----CC
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eEeehh-hhhhhH-HHHhhhh----hh
Confidence            34566 444579999999999999999999999999999999999983     222222 122111 1111111    33


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .+ .+.+..++.|++.+...+ ....++.|.+|+++|++++++.+....++..++|.+++.+.+. .+|+
T Consensus        85 ~~-~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~  151 (352)
T PF07690_consen   85 FW-LLLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWR  151 (352)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHC
T ss_pred             HH-HHhhhccccccccccccc-cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-cccc
Confidence            34 677888899999888888 8899999999999999999999999999999999999999866 5553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.06  E-value=3.8e-09  Score=103.02  Aligned_cols=156  Identities=12%  Similarity=0.035  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhch-hHH-HHHHH-HHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNR-AHV-IALGA-FLWAA   83 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~gr-r~~-l~~~~-~~~~~   83 (522)
                      +..+.+..+.............|. +.+.+|.++.+.+++.+...++..++.++.|++.||..+ |+. +.... ....+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  297 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV  297 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            344445555555444445555555 456789999999999999999999999999999998643 332 22222 22222


Q ss_pred             HHHHHHh--hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009914           84 ATFLVAF--SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGI  161 (522)
Q Consensus        84 ~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~  161 (522)
                      +......  ..+....++..++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.     
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----  372 (379)
T TIGR00881       298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-----  372 (379)
T ss_pred             HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-----
Confidence            2222222  234555566667777766666666678889999999999999999999999999999999999988     


Q ss_pred             CCchHHH
Q 009914          162 PGWRISF  168 (522)
Q Consensus       162 ~gw~~~f  168 (522)
                      .||+..|
T Consensus       373 ~g~~~~f  379 (379)
T TIGR00881       373 FGWAGAF  379 (379)
T ss_pred             hcccccC
Confidence            8888754

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.06  E-value=1.5e-08  Score=101.87  Aligned_cols=178  Identities=17%  Similarity=0.140  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH--------HHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV--------IAL   76 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~--------l~~   76 (522)
                      +.++.+.+..+........+...+|.+ .+.+|.+..+.|++.++..++..++.++.|+++||+++|+.        +..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            345566666666666666666667755 56689999999999999999999999999999999875421        111


Q ss_pred             HHHHHHHHHHH--HHh-hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           77 GAFLWAAATFL--VAF-SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        77 ~~~~~~~~~~~--~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      +......+..+  ... ..+....++.-.+.+.+.+...+.......+..|+ .++..+++.+....+|..++|.+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111111111  112 22344444445555555555555555566676654 799999999999999999999999988


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                      .+..  ...+|+..|.+.++..++..++..++.
T Consensus       420 ~~~~--~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       420 LSQD--SKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eCCC--CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            7641  113489999999888877776665544

>PRK10133 L-fucose transporter; Provisional

Probab=99.05  E-value=2e-08  Score=99.48  Aligned_cols=142  Identities=14%  Similarity=0.044  Sum_probs=113.4

Q ss_pred             HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhH
Q 009914           33 GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVA  112 (522)
Q Consensus        33 ~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  112 (522)
                      .+.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.. .+..-++.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999888877777766666655542 3456678999999999


Q ss_pred             HHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC-chHHHHHHHHHHHHHHHhh
Q 009914          113 PAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG-WRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       113 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g-w~~~f~~~~~~~~i~~~~~  182 (522)
                      |...+...+..++ +.+.+.++... ..+|..++|.+.+.+.+.     .| -+..|++..+..+....+.
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~-----~g~~~~~~~v~~~~~~~~~~~~  429 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDA-----AGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHH
Confidence            9999999998765 35677777764 446788888888888876     66 7888887666555544443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.1e-08  Score=86.89  Aligned_cols=332  Identities=14%  Similarity=0.169  Sum_probs=183.4

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhH
Q 009914           15 GIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTF   94 (522)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~   94 (522)
                      +++...+....+|.+-++-+.+|....++|.+..+..-..++...+.|.++|+-|||+..+.-++.+.++++ .-.++.+
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY  124 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY  124 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce
Confidence            334444445556655566677888999999999888888899999999999999999986665555554443 3456789


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHH-hhccCCCchhHHHHHHH--------HHHHHHHHHHHHHHHhhhcccccCCCCch
Q 009914           95 AQVAISRALNGIGLALVAPAIQSLV-ADSTDDSNRGVAFGWLQ--------LTSNIGSLVGGLFSVVMAPMTFMGIPGWR  165 (522)
Q Consensus        95 ~~l~~~r~l~G~~~~~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~lg~~~g~~l~~~l~~~~~~~~~gw~  165 (522)
                      -.++++|++-|+..+..+.+..++. .|.-+  +|+.---+..        .+..+-.+++.+.+..+.+...   .|--
T Consensus       125 kVLmVGR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s---lGPV  199 (454)
T KOG4332|consen  125 KVLMVGRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS---LGPV  199 (454)
T ss_pred             EEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc---cCCC
Confidence            9999999999999999998887765 45442  2332222211        2233334444455555554311   3555


Q ss_pred             HHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHH-HHHhhhccchhH-
Q 009914          166 ISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGVTGSFPWS-  242 (522)
Q Consensus       166 ~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-  242 (522)
                      .+|-..+.+..+...+... .-++-. .+.++        +...   +......+.+..++.+.++ .+...+-...|. 
T Consensus       200 APFdAAacfLaigmAvil~~W~ENyg-dps~~--------kdll---tqf~gaa~aiaSD~ki~LLG~iqsLFE~smytF  267 (454)
T KOG4332|consen  200 APFDAAACFLAIGMAVILSSWSENYG-DPSEN--------KDLL---TQFKGAARAIASDEKIALLGAIQSLFEGSMYTF  267 (454)
T ss_pred             CchHHHHHHHHHHHHHHHhhhhhccC-Chhhh--------HHHH---HHhhHhHHHHhcchHHHHHHHHHHHHhhhhhee
Confidence            6666554443333332222 111111 11110        0000   1111122233444444333 333333332222 


Q ss_pred             HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009914          243 ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  321 (522)
Q Consensus       243 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (522)
                      .+.|.|..- ++.+.+   -|++++.+.++.++|+-+..++..|-..|-.   ..+.+............+.........
T Consensus       268 VFLWTPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~l~Lpilt~~vsP~k  341 (454)
T KOG4332|consen  268 VFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAALLLPILTSSVSPSK  341 (454)
T ss_pred             eeeecccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            223444432 122332   3678888888888888888777665443321   222222222221111111111111122


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHH
Q 009914          322 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  371 (522)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (522)
                      ..+..-.+.++++-.+.|...| .++-+-.+..|.+.|++.+-.+..--+
T Consensus       342 es~~~s~i~F~~~E~cvGlfwP-SimkmRsqyIPEearstimNfFRvPLn  390 (454)
T KOG4332|consen  342 ESPSESLIGFCLFEACVGLFWP-SIMKMRSQYIPEEARSTIMNFFRVPLN  390 (454)
T ss_pred             CCchHHHHHHHHHHHHHhhcch-HHHHHHHhhCCHHHHhhhhhheechhh
Confidence            3334445666777778888888 788888899999999887666554333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.02  E-value=1.5e-08  Score=99.39  Aligned_cols=133  Identities=16%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          245 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      ..+|.+.+++|.|+.+.++..+...++..++.++.|+++||+|||+     .+..... ...+  .......    .++.
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-----~~~~~~~-~~~~--~~~~~~~----~~~~   96 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-----VILVGMS-IFIL--GTLVALF----AHSL   96 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHHHHHH-HHHH--HHHHHHH----HccH
Confidence            3467778889999999999999999999999999999999999984     3332211 1111  1111111    1233


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +.+.+..++.|++.+...+ ....+..|..++++++.+.+..+....++..++|.+.+.+.+. .||
T Consensus        97 ~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~  161 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGW  161 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh
Confidence            4455666777877766555 5667788888889999999999999999999999999998876 565

>PRK09848 glucuronide transporter; Provisional

Probab=99.02  E-value=3e-08  Score=99.07  Aligned_cols=149  Identities=13%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH-HHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      +....+..++............|.+ .+.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.+
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~  309 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYL  309 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3444444444444444444455544 345676665555555555677888999999999999999999999988888877


Q ss_pred             HHHhhh--hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC-------chhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           87 LVAFSS--TFAQVAISRALNGIGLALVAPAIQSLVADSTDDS-------NRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        87 ~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++.+.+  +++.+++..++.|+|.+...+...++.+|..|.+       ++|..++..+....+|..+|+.+.+.+.+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        310 LFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776654  5677777788999999999999999999988654       358899999999999999999999887654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1e-08  Score=96.02  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH----hchhHH-HHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR----HNRAHV-IALGAFL   80 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~grr~~-l~~~~~~   80 (522)
                      +.++.++...+-..+.+..-....+++.+++|++....+.+-.+..+...+.+|+.|..+||    |||||. +..+...
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            44555555555556666666667778888899999999999999999999999999999995    888877 6666677


Q ss_pred             HHHHHHHHHhhhhHHH-----------------HHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhH-HHHHHHHHHHHH
Q 009914           81 WAAATFLVAFSSTFAQ-----------------VAISRALNGIGLALVAPAIQSLVADSTDDSNRGV-AFGWLQLTSNIG  142 (522)
Q Consensus        81 ~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lg  142 (522)
                      ..++.++..++.++..                 ++++--+.=++.-....++.+++.|...++++.+ +++++..+.++|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            7788888887755433                 2334444445666778889999999997666555 999999999999


Q ss_pred             HHHHHHHHHhh
Q 009914          143 SLVGGLFSVVM  153 (522)
Q Consensus       143 ~~~g~~l~~~l  153 (522)
                      .++|..++++.
T Consensus       192 nvLGY~~g~y~  202 (498)
T KOG0637|consen  192 NVLGYALGSYL  202 (498)
T ss_pred             ceeeeeccccc
Confidence            99999888744

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=1.4e-08  Score=99.67  Aligned_cols=133  Identities=16%  Similarity=0.111  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 009914          245 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       245 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      ...|.+.+++|.+..+.|++.+...++.+++++..|++.||+|+|+     .+..... +.++  ......... ..++.
T Consensus        24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-----~~~~g~~-l~~~--g~~l~~~~~-~~~~~   94 (410)
T TIGR00885        24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-----GILLGLF-LYAL--GAFLFWPAA-EIMNY   94 (410)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHHH-HHHH--HHHHHHHHH-hhccH
Confidence            5677777789999999999999999999999999999999999984     3222221 1111  111111111 12344


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.+.+..++.|++.+...+ ....++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus        95 ~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        95 TLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5566777888999888887 7788888999999999999999999999999999999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.00  E-value=6e-08  Score=94.29  Aligned_cols=180  Identities=13%  Similarity=0.031  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      +.....+.+.......+.+........+.++-|++..+.-++.....+...+..+++..+.||+|||+.++.+..++.+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33344444444445555566677777888899999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhh---hHH------HHHHHHHHHHHHhhh-hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009914           85 TFLVAFSS---TFA------QVAISRALNGIGLAL-VAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        85 ~~~~~~~~---~~~------~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      .+++....   +..      ..+++.++..++.+. ..|...-+.+|.+|++.|..++++......+...+-...-..+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87776542   111      123444444444443 36677889999999999999999999999888887777777776


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCC
Q 009914          155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPH  190 (522)
Q Consensus       155 ~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  190 (522)
                      +.     .|- +.|++..+.+++..+..++..+|.+
T Consensus       429 ~~-----~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  429 NV-----IGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HH-----hcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            65     554 7888888888888888888665543

>PRK11043 putative transporter; Provisional

Probab=99.00  E-value=9.7e-08  Score=93.99  Aligned_cols=131  Identities=8%  Similarity=0.007  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH---Hh--hhhHHHHHH
Q 009914           25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV---AF--SSTFAQVAI   99 (522)
Q Consensus        25 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~---~~--~~~~~~l~~   99 (522)
                      +....|.+.+++|.++.+.|+......++..++.++.+++.||+|+|+.+.......+++.+..   ..  .++.+.+++
T Consensus       222 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        222 WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            3345677778899999999998888888999999999999999999987665555444443322   22  245555666


Q ss_pred             HHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914          100 SRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus       100 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ...+.|++.+...+...+...+..| +++++++++.+.....+...++.+.+.+.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            6778888889999988888877765 5799999999998888888888888888654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.98  E-value=1.8e-08  Score=99.17  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHH
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  326 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (522)
                      +|.+.++++.+..+.++..+++.++..++.++.|+++||+|||+     .+..... +..+  ..+... .   .++.+.
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-----~l~~~~~-~~~~--~~~~~~-~---a~~~~~  106 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-----VLITGAL-IFTL--ACAATL-F---TTSMTQ  106 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-----HHHHHHH-HHHH--HHHHHH-H---cCCHHH
Confidence            45555789999999999999999999999999999999999994     3332211 1111  111111 1   133444


Q ss_pred             HHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          327 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +.+.-++.|++.+...+ ....++.|.+|++++++.+++.+....++..++|.+++.+.+. .||
T Consensus       107 l~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw  169 (413)
T PRK15403        107 FLIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHW  169 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCH
Confidence            56667778887765555 5667888999999999999999999999999999999998877 565

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.97  E-value=2.3e-08  Score=99.17  Aligned_cols=151  Identities=18%  Similarity=0.153  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      +.+..+....++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  304 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF  304 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence            44556666677777777777767777666543344678888899999999999999999999999999999999999999


Q ss_pred             HHHHhhh--hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           86 FLVAFSS--TFAQVAISRALNGIGLALVAPAIQSLVADSTDD-------SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        86 ~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++..+.+  +.+.+++..++.|++.+...+...++++|..+.       ++.|..+|.......+|..+++.+.+.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9988886  899999999999999999999999999998873       3458889999999999999999998887754

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.96  E-value=5.4e-08  Score=91.98  Aligned_cols=165  Identities=24%  Similarity=0.353  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCCh--hhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDP--TGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   88 (522)
                      .....+.............+.+..+++.+.  .+.++..+.+.+...++.++.|.+.||+|||+.+..+.....++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   86 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL   86 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            344445555666777788888888888777  588999999999999999999999999999988888887666666677


Q ss_pred             Hhhhh--HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC-CchhHHHHHHHH-HHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           89 AFSST--FAQVAISRALNGIGLALVAPAIQSLVADSTDD-SNRGVAFGWLQL-TSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        89 ~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      .+..+  .+.+++.|+++|++.+...+...+++.++.|+ ++|+...+.... ...+|.++++.+++.+...   ...+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  163 (338)
T COG0477          87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGW  163 (338)
T ss_pred             HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcch
Confidence            77766  88999999999999999999999999999987 678999999888 5888999999887777653   33689


Q ss_pred             hHHHHHHHHHHHHH
Q 009914          165 RISFHIVGLISVVV  178 (522)
Q Consensus       165 ~~~f~~~~~~~~i~  178 (522)
                      |..|.+........
T Consensus       164 ~~~~~~~~~~~~~~  177 (338)
T COG0477         164 RAAFLLAALLGLLL  177 (338)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99777776655444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.95  E-value=2.7e-08  Score=96.62  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 009914          241 WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       241 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (522)
                      +....+.|.++ +++|+|..+.+++.+...++.+++.++.|+++||+|+|+     .+.... .+..+......+     
T Consensus        18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~~~~-~~~~i~~~~~~~-----   86 (366)
T TIGR00886        18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-----TTTLSL-LLLAIPCLWAGL-----   86 (366)
T ss_pred             HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHH-HHHHHHHHHHHH-----
Confidence            34446678644 679999999999999999999999999999999999984     322221 111111111111     


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          320 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .+.+.+.+.+..++.|++.+.. + ....++.+.+|+++|+++.++.....++|..+++.+.+.+...
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886        87 AVQSYSVLLLLRLFIGIAGGSF-A-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             HhhhHHHHHHHHHHHHHhchhh-H-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            1103444556667778775543 4 4678899999999999999999988888988888888777664

>PTZ00207 hypothetical protein; Provisional

Probab=98.93  E-value=4.6e-08  Score=98.26  Aligned_cols=136  Identities=10%  Similarity=0.012  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009914          241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  320 (522)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (522)
                      |....+.|.+.+++|++..+.+.+....... ....++.|++.||+|+|+     .+.... ....+......+......
T Consensus        44 y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~-----vllig~-ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRP-----IFVLSM-TVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHH-----HHHHHH-HHHHHHHHHHHHHhcccc
Confidence            4444566766678999999999888764333 345667899999999984     332221 111111111111101111


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          321 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      ..+.+.+.+..++.|++.+...+ .....+.+.+| ++||++.|+......+|+++.+.+...+.
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455566777788888877766 56677788887 78999999999999999987555544444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.92  E-value=4e-07  Score=86.76  Aligned_cols=372  Identities=14%  Similarity=0.072  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHh--cCCChhhhHHHHHHHHHHHHhhhhhHHHHHH-----HhchhHHHHH-HHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAA--LHTDPTGLGSLTLFRSIVQASCYPIAAYLAI-----RHNRAHVIAL-GAFL   80 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D-----r~grr~~l~~-~~~~   80 (522)
                      .++.+.+++++.-.+.....+|.+.++  -+.|.+|.|... .....+. ..++|.++.|     |+||||.-++ .-.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            456677788887777765677888888  788999987543 2233333 3566777776     7899987443 3333


Q ss_pred             HHHHHHHHHhhh----------------------hH--HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHH
Q 009914           81 WAAATFLVAFSS----------------------TF--AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQ  136 (522)
Q Consensus        81 ~~~~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  136 (522)
                      .++..+..+..-                      +.  ..+...-++.-+-.+--..+...+.-....+++++.+..-..
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            333333322211                      01  112222222223334445555666666777788888777777


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-----------ccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCC----C--C--C
Q 009914          137 LTSNIGSLVGGLFSVVMAPMT-----------FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG----G--T--A  197 (522)
Q Consensus       137 ~~~~lg~~~g~~l~~~l~~~~-----------~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~----~--~--~  197 (522)
                      .+.+.|..++..+--.+.+.+           ..+...-..-..+.|...++..++..++.+|++....    +  +  +
T Consensus       161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~  240 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD  240 (544)
T ss_pred             hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence            777777777665544443211           0011111222334455556666666666555322111    0  0  0


Q ss_pred             --CCc-----ccc---cchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHH-HHHHHHHHHhCCChhHHHHHHH
Q 009914          198 --NSD-----QVS---SKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMA  266 (522)
Q Consensus       198 --~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~  266 (522)
                        .++     .+.   ......++++..+...+++|.|....+++..+..-..+... .....=+-+.|++.++.+.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~l  320 (544)
T PF13000_consen  241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVL  320 (544)
T ss_pred             ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHH
Confidence              000     000   12223456677777778888888887766665555544322 3344445589999998776665


Q ss_pred             HHHHHHhccchhhhhhhhHhhhcCC-Cc---------------h----------hHHHHHH-HHHHHHHHHHHHHHhCCC
Q 009914          267 LFVIASSLGGLFGGRMGDFLSARFP-NS---------------G----------RIILAQI-SSLSAIPLAALLLLVLPD  319 (522)
Q Consensus       267 ~~~~~~~~~~~~~g~l~~~~~~~~~-~~---------------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~  319 (522)
                      +.    +...++.|+++.|+.+.++ ..               .          +..+... .-+....+.......++.
T Consensus       321 i~----~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~  396 (544)
T PF13000_consen  321 ID----FPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPS  396 (544)
T ss_pred             Hh----hhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCC
Confidence            44    3344444454444433221 00               0          1111111 011111111111122331


Q ss_pred             CCch----hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          320 DPST----PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       320 ~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ....    ..++++..++..+..-..+. ...+.-+++.+|..-|+.+-+.|++.++|+-.-..+.=++.|.
T Consensus       397 ~g~v~~~Yf~lvI~~~~l~sf~stvmFV-ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  397 DGPVPTYYFLLVIIQHVLSSFMSTVMFV-AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            1111    11122222333344444444 5677888899999999999999999999999999898889988

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.91  E-value=1.3e-08  Score=92.50  Aligned_cols=135  Identities=14%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             HHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchh
Q 009914           50 RSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRG  129 (522)
Q Consensus        50 ~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  129 (522)
                      ..+.-..+.++.+.+.||+|||+.|....+++++..++.....+-..+.+..+..-++.+..+.+.+.|..|.+|..-|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34555678889999999999999999999999998888776654333322222333334444556678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCC
Q 009914          130 VAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHF  191 (522)
Q Consensus       130 ~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~  191 (522)
                      ...|.-.....+|.++.|+++ ...+      ..-..+..+.+.+.++..+...++|-+++-
T Consensus       470 tgvGtcSsmaRIggI~~p~iA-~~~e------~s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA-MRAE------LSTSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH-HHhc------cceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence            999999999999999999999 3333      345567778888888899998898877653

>PRK09669 putative symporter YagG; Provisional

Probab=98.90  E-value=1.2e-07  Score=94.64  Aligned_cols=146  Identities=13%  Similarity=0.054  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Q 009914           11 VNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF   90 (522)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   90 (522)
                      +....++............+++.++.-.++...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+
T Consensus       234 l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  313 (444)
T PRK09669        234 MFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF  313 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            33344433333333344444444433223444455666777888888999999999999999988887766654443333


Q ss_pred             --hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           91 --SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDD-------SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        91 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                        .++.+.+++..++.|++.+...+...++++|..+.       ++.+..++.......+|..+|+.+++.+.+.
T Consensus       314 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        314 IPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              24677778888999999999999999999998852       2346678889999999999999999998765

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.9e-07  Score=85.27  Aligned_cols=172  Identities=15%  Similarity=0.104  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-chhHHHHHHHHHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-NRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~   88 (522)
                      .+.+-+-+..+..++....+|.+..|.|+|..+.|++.+...+.....++..-.+++|. ++|+..+....++.++...+
T Consensus       212 ~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         212 QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            33444444555566777788999999999999999999999999999999999999975 46777777777888888877


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           89 AFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDD-SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      .+.|.-..+.- .++.|+|.|..++.+..++.+..++ ++-++..++.+....+=..+||.+.|++.+..    .+|+.+
T Consensus       292 ~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----gsw~~~  366 (395)
T COG2807         292 LLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----GSWSAP  366 (395)
T ss_pred             HHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc----CChHHH
Confidence            77765433333 4899999999999999999988754 45566677777777777788999999998864    789999


Q ss_pred             HHHHHHHHHHHHHhhhhcc
Q 009914          168 FHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~  186 (522)
                      +...+...++..+..+..-
T Consensus       367 ~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         367 LVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            9998888888777766644

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.88  E-value=2.8e-08  Score=94.92  Aligned_cols=168  Identities=20%  Similarity=0.133  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS   91 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   91 (522)
                      .+...+.+........++-.-.++++..++..|........+-++.-++.+++..|+|+-+++..++.+.++=.+.....
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L  456 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL  456 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence            33444445555555555566678888888889988888888888899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhhcccccCCCCchHHHHH
Q 009914           92 STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQL-TSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHI  170 (522)
Q Consensus        92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~  170 (522)
                      .|.|..+...+++|+..+..+.+..+++++..||+.|+.+.++++. ..++|--+|.++||.+.+.     ++-|..|.+
T Consensus       457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----fg~~ttf~~  531 (618)
T KOG3762|consen  457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-----FGARTTFRI  531 (618)
T ss_pred             cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-----ehhHHHHHH
Confidence            9999999999999999999999999999999999999999999775 5689999999999999998     899999999


Q ss_pred             HHHHHHHHHHhhhh
Q 009914          171 VGLISVVVGTLVRL  184 (522)
Q Consensus       171 ~~~~~~i~~~~~~~  184 (522)
                      .++.+++..++...
T Consensus       532 ~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  532 FGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888877666544

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.86  E-value=1.7e-07  Score=90.05  Aligned_cols=130  Identities=14%  Similarity=0.087  Sum_probs=99.6

Q ss_pred             HHHHHHHhCCChhH-HHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          247 AAMWLELTGFSHEK-TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       247 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      .|.+.+++|++..+ .|.+...+..+..+..+..|+++||+|.|+     .+..... .-++......+      .....
T Consensus        49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----vL~l~~l-~Wsl~t~L~~f------a~Sl~  116 (511)
T TIGR00806        49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----VLVLQAL-SFVCVWLLLLL------GTSVW  116 (511)
T ss_pred             HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHHH-HHHHHHHHHHH------HHHHH
Confidence            45555689999999 999999999999999999999999999984     3222221 11111111111      13355


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .+.+.-++.|++.+....  ...++...+|+++|+++.|+.+....+|.++++++++++ .. +||.
T Consensus       117 ~L~i~R~llGvaEA~~~A--~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s-~gWr  179 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARIA--YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VT-LGWI  179 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCch
Confidence            577788899999887774  889999999999999999999999999999999999994 34 4653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.83  E-value=3.5e-08  Score=98.51  Aligned_cols=123  Identities=13%  Similarity=0.089  Sum_probs=108.8

Q ss_pred             HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 009914           34 AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS----------STFAQVAISRAL  103 (522)
Q Consensus        34 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l  103 (522)
                      +.+|.++.+.|++.....++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.++...++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5689999999999999999999999999999999999999999999988877554311          333455666788


Q ss_pred             HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914          104 NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus       104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      .+++.+....+...++.+..|+++++...++.....++|..+++.+++.+.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.83  E-value=1e-07  Score=95.65  Aligned_cols=151  Identities=14%  Similarity=0.058  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      +.+..+....++............+++.+....+....+++.+...++..++.+++++++||+|+|+.+.++..+.+++.
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~  310 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSC  310 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            33444444455555555555555566655554466677778887778899999999999999999999988887766665


Q ss_pred             HHHHh-----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           86 FLVAF-----SSTFAQVAISRALNGIGLALVAPAIQSLVADSTD-------DSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        86 ~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      +...+     ..+.+.+++.-++.|++.+...+...++++|..|       +++.|..++......-+|..+++.+.+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        311 GVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55432     2356677777888999999999999999999865       23346688999999999999999999988


Q ss_pred             hcc
Q 009914          154 APM  156 (522)
Q Consensus       154 ~~~  156 (522)
                      .+.
T Consensus       391 l~~  393 (473)
T PRK10429        391 LGL  393 (473)
T ss_pred             HHH
Confidence            754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.79  E-value=7.1e-08  Score=94.83  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhh----HhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhC-
Q 009914          243 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGD----FLSARFPNSGRIILAQISSLSAIPLAALLLLVL-  317 (522)
Q Consensus       243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  317 (522)
                      ...+++.|++++|.+....+.+.....+.+++..++.|+++|    |+|||++     .+........+.+..+.+... 
T Consensus        23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-----~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-----FIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-----HHHHHHHHHHHHHHHHHhCchh
Confidence            345778889999999999999999999999999999999999    4898853     222212222111111111000 


Q ss_pred             ----C----CCCchh--HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchh--HHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          318 ----P----DDPSTP--VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR--TSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       318 ----~----~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                          .    ......  +...+.+.+..++.....+ ...+++.|.+|+++|  +.++++.+...++|+.+++.+++..
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0    000011  2233444455556666666 678999999998765  6799999999999999999998875

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.76  E-value=1.3e-08  Score=93.06  Aligned_cols=118  Identities=22%  Similarity=0.183  Sum_probs=87.4

Q ss_pred             CCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 009914          255 GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVT  334 (522)
Q Consensus       255 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (522)
                      +-+....|++-+.+.+..++.++.+|.++||+|||.     .++.+..      ...+.+..+.. +.+...+...=++.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----vll~c~~------~va~s~ll~~~-S~~F~afv~aR~l~  131 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP-----VLLACLI------GVALSYLLWAL-SRNFAAFVLARFLG  131 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-----HHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            345567889999999999999999999999999993     2222111      11112222222 23333333335677


Q ss_pred             HHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          335 GLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       335 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      |++-+...+  ..++++|++++++|+.+++.++...++|-.+||.++|++..
T Consensus       132 Gi~kgnl~v--~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  132 GIFKGNLSV--IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhccCchHH--HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            777776555  89999999999999999999999999999999999999988

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.5e-07  Score=92.42  Aligned_cols=156  Identities=21%  Similarity=0.304  Sum_probs=116.7

Q ss_pred             HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 009914          253 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  332 (522)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (522)
                      ++.++..+-+++.+....+.+++.+..|++.||+|.|+     ...... .+.++ ...+.-+..   ....+.+++.=+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~-----v~~~~~-~~sa~-~t~l~P~aa---~~~~~~~~~~R~  136 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR-----VFFISG-LISAL-LTLLTPLAA---SIGFYLLLVLRF  136 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH-----HHHHHH-HHHHH-HHHHHHHHH---HhcchhhHHHHH
Confidence            47788999999999999999999999999999999994     222211 11111 111111111   111124677888


Q ss_pred             HHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcccCCCCCCcchhhhhhhhhHH
Q 009914          333 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAA  412 (522)
Q Consensus       333 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~  412 (522)
                      +.|++.+...| ....+..+-.|+++|++..++.....++|..++-++.|.+.+...||                     
T Consensus       137 lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW---------------------  194 (466)
T KOG2532|consen  137 LQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW---------------------  194 (466)
T ss_pred             HhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC---------------------
Confidence            99999999999 89999999999999999999999999999999999999999987788                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Q 009914          413 SLAKALYTAIGIPMALCCFIYSFLYSTYPRD  443 (522)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (522)
                         ...|++.++..++..+++..++.-.|++
T Consensus       195 ---~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  195 ---PSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             ---chHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence               4556667776666666666655544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.71  E-value=5.1e-09  Score=98.36  Aligned_cols=129  Identities=13%  Similarity=0.075  Sum_probs=102.5

Q ss_pred             HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 009914          253 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  332 (522)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (522)
                      .++.+....|++.....+..++.+++.|++.||+.|++..     ...+.+-.    ...+...  . ....|.+.++=.
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~-----~vG~~iW~----~Av~~~~--f-s~~Fwq~~l~R~  129 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI-----AVGIFIWT----LAVFASG--F-SNHFWQVLLCRG  129 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE-----eeHHHHHH----HHHHHHH--H-HHHHHHHHHHHH
Confidence            4899999999999999999999999999999999998532     11111111    1111111  1 145566778888


Q ss_pred             HHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcccC
Q 009914          333 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  394 (522)
Q Consensus       333 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~~~  394 (522)
                      +.|+|.+...+ +..++++|.+|.+.|++++++++.....|..+|-+.++.+.++.+.|+.+
T Consensus       130 ~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a  190 (493)
T KOG1330|consen  130 FVGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA  190 (493)
T ss_pred             Hhccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence            99999999999 99999999999999999999999999999999999999998885556554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.69  E-value=5.6e-08  Score=100.23  Aligned_cols=137  Identities=10%  Similarity=-0.015  Sum_probs=101.0

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC--------
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP--------  318 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  318 (522)
                      ++.+-++++++..+.|++.+.+.++.+++.++.+++.||.+|++......++.    .++..+..+.-+...        
T Consensus        56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~----~lg~ll~alphf~~~~y~~~~~~  131 (633)
T TIGR00805        56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIM----GLGSFLLSLPHFLSGRYSYSTTV  131 (633)
T ss_pred             chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHH----HHHHHHHhChHHhcCCccccccc
Confidence            45555679999999999999999999999999999999999886421111111    111111111100000        


Q ss_pred             ----------------C-----------------C--CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHH
Q 009914          319 ----------------D-----------------D--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY  363 (522)
Q Consensus       319 ----------------~-----------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (522)
                                      .                 .  ...+..+++.-++.|++.+...+ ...+++.|.+|+++|+...
T Consensus       132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP-LGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh-cCchhhhccCCccccHHHH
Confidence                            0                 0  01244566788899999998888 8899999999999999999


Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHh
Q 009914          364 AMDRSFESILSSFAPPVVGILAQHV  388 (522)
Q Consensus       364 g~~~~~~~~~~~i~~~~~g~l~~~~  388 (522)
                      |+.+....+|..+|+.++|++.+..
T Consensus       211 ~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       211 GILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            9999999999999999999998763

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.69  E-value=9.7e-08  Score=78.31  Aligned_cols=112  Identities=16%  Similarity=0.281  Sum_probs=80.7

Q ss_pred             HHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCc
Q 009914          266 ALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPAT  345 (522)
Q Consensus       266 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (522)
                      ....++.+++.++.+++.||+++|+     ....... .....  .+... .   ..+.+......++.|++.+...+ .
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----~~~~~~~-~~~~~--~~~~~-~---~~~~~~~~~~~~~~g~~~~~~~~-~   71 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKP-----VLLVGLF-IFVLS--TAMFA-L---SSNITVLIIARFLQGFGAAFALV-A   71 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhH-----HHHHHHH-HHHHH--HHHHH-H---hccHHHHHHHHHHHHHHHHHHHH-h
Confidence            3456778888999999999999884     3222211 11111  11111 1   12334455677888888887777 7


Q ss_pred             chhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          346 NNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ...++.|..|+++|++..++.+....++..++|.+.+.+.+. .++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~  116 (141)
T TIGR00880        72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-LGW  116 (141)
T ss_pred             HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cch
Confidence            889999999999999999999999999999999999999876 454

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.68  E-value=2e-07  Score=66.67  Aligned_cols=80  Identities=13%  Similarity=-0.007  Sum_probs=74.7

Q ss_pred             HHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009914           18 ERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQV   97 (522)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l   97 (522)
                      .++.+..+.+++|.++++.++|.++.|++.+...+++.++++...++.++..+++.+..+.+...+..+.+++.++++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46778889999999999999999999999999999999999999999999888999999999999999999999887654

Note that many members are hypothetical proteins.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.7e-07  Score=86.41  Aligned_cols=161  Identities=15%  Similarity=0.154  Sum_probs=129.5

Q ss_pred             HhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009914           21 DESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHN--RAHVIALGAFLWAAATFLVAFSSTFAQV   97 (522)
Q Consensus        21 ~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g--rr~~l~~~~~~~~~~~~~~~~~~~~~~l   97 (522)
                      .....-|.++ .+.+.+..+..++|+..--..+.+.++..+.|.++||++  |-.....+++..+++.....+++++..+
T Consensus       285 ~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L  364 (464)
T KOG3764|consen  285 SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQL  364 (464)
T ss_pred             hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHH
Confidence            3344444445 477788877779999999999999999999999999999  4333555666667777777888999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhccCCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHH
Q 009914           98 AISRALNGIGLALVAPAIQSLVADSTDDS------NRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIV  171 (522)
Q Consensus        98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~  171 (522)
                      ++-++..+++.+..............+.+      -.|...++....+++|..+||.+++.+.+.     .|++|.-.+.
T Consensus       365 ~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-----iGF~wl~~ii  439 (464)
T KOG3764|consen  365 WVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-----IGFEWLMTII  439 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-----hhHHHHHHHH
Confidence            99988888888877777666666666433      346889999999999999999999999998     8999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 009914          172 GLISVVVGTLVRLFA  186 (522)
Q Consensus       172 ~~~~~i~~~~~~~~~  186 (522)
                      ++..++...+...+.
T Consensus       440 g~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  440 GILNLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988877766543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.63  E-value=2.5e-06  Score=69.99  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC
Q 009914           46 LTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDD  125 (522)
Q Consensus        46 ~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  125 (522)
                      -.++......+..++...+.+++|.|+.++++.+.+.+-.+.. +-++.+.++.+-++.|++.+..+++.-.++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3466666777888889999999999999999999888655543 557888999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914          126 SNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus       126 ~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      +++++..++.......+.++|.++.-.+.+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.61  E-value=2.7e-06  Score=82.19  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      .+...++.+++.....++......++.+ .+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++.+++.
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            3444445666666666676666665544 467777777788888888888889999999999999999999999999999


Q ss_pred             HHHHhhh--hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           86 FLVAFSS--TFAQVAISRALNGIGLALVAPAIQSLVADSTDD-------SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        86 ~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++..+.+  +.+.+++..++.+++.+...+...++++|..+-       ++-|...+....+.=+|..++..+.++....
T Consensus       317 ~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         317 LLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876  678888899999999999999999999987752       3347778888888888999999888887754

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.59  E-value=1e-05  Score=76.13  Aligned_cols=155  Identities=18%  Similarity=0.154  Sum_probs=129.8

Q ss_pred             HHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHH-HhchhHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 009914           30 KEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAI-RHNRAHVIALGAFLWAAATFLVAFS---STFAQVAISRALNG  105 (522)
Q Consensus        30 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D-r~grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G  105 (522)
                      |+=.+.||+|..|...+......+..++....|++.. |.++++.-.+++....++..+..++   .+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            3445679999999999999999999999999999888 6788888888888877776665544   57889999999999


Q ss_pred             HHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc----c-cCCCCchHHHHHHHHHHHHHHH
Q 009914          106 IGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT----F-MGIPGWRISFHIVGLISVVVGT  180 (522)
Q Consensus       106 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~----~-~~~~gw~~~f~~~~~~~~i~~~  180 (522)
                      ++.|.+.....+.+.+..++++.|..+|.+.....++..+|..+++.+.+..    . ....+|..+|.+-++..++...
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887532    1 2346788899988887766665


Q ss_pred             hhhh
Q 009914          181 LVRL  184 (522)
Q Consensus       181 ~~~~  184 (522)
                      +...
T Consensus       393 ll~~  396 (403)
T PF03209_consen  393 LLGR  396 (403)
T ss_pred             HHHH
Confidence            5543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.56  E-value=3.6e-07  Score=87.43  Aligned_cols=174  Identities=18%  Similarity=0.199  Sum_probs=116.2

Q ss_pred             HHHhhhccchhHHHHHHHHHHH-HhC----CChhHHHHHHHHHHHHHhccchhhhhhhhHh-hhcCCCchhHHHHHHHHH
Q 009914          231 VAQGVTGSFPWSALSFAAMWLE-LTG----FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSL  304 (522)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~  304 (522)
                      ..-..--+.+|++...+..|+. +.+    +|.+++.-++..+..-.-+..+++||++||+ |+|+     .+... .++
T Consensus        28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~-----tI~lG-ail  101 (498)
T COG3104          28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR-----TIVLG-AIL  101 (498)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----HHHHH-HHH
Confidence            3333444446777777777774 455    9999988888888777778899999999996 6663     21111 111


Q ss_pred             HHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc--hhHHHHHHHHHHHHHHhchhhHHHH
Q 009914          305 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSFESILSSFAPPVVG  382 (522)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~i~~~~~g  382 (522)
                      .   ...-..+.... ......+.+.+.+++++.|..-+ ...+++.|++|++  +|-...++..+..++|+.++|.+.+
T Consensus       102 ~---~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~-NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104         102 M---AIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKP-NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             H---HHHHHHHhccc-cccccHHHHHHHHHHhccccccc-cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence            1   11222222221 01223366777888899999988 8899999999754  3556778888888999999999999


Q ss_pred             HHHHHhhCcccCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 009914          383 ILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTY  440 (522)
Q Consensus       383 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (522)
                      ++.++ .||+                        ..|...++-...+++.++...++.
T Consensus       177 ~~~~~-~g~~------------------------~gF~~aavGm~~gl~~f~~~~r~~  209 (498)
T COG3104         177 LLAIN-YGWH------------------------VGFGLAAVGMIIGLVIFLLGRRHV  209 (498)
T ss_pred             HHHHh-hCHH------------------------HHHHHHHHHHHHHHHHHHHccchh
Confidence            99999 6763                        335555555555555555555443

>PRK11462 putative transporter; Provisional

Probab=98.56  E-value=5.1e-06  Score=82.95  Aligned_cols=145  Identities=14%  Similarity=0.106  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Q 009914           12 NLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS   91 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   91 (522)
                      ....++.............++.+...-++...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~  313 (460)
T PRK11462        234 GLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV  313 (460)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444444444444444345556677788888999999999999999999998775555444433333333


Q ss_pred             h--hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           92 S--TFAQVAISRALNGIGLALVAPAIQSLVADSTD-------DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        92 ~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      +  +...+++.-++.|++.+...+...++++|..+       +++.+..++......-+|..+++.+++.+...
T Consensus       314 ~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        314 PMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  23344555567788877777777788888766       23335556777788889999999998887754

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.54  E-value=0.0007  Score=66.97  Aligned_cols=274  Identities=12%  Similarity=0.109  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc---CCChhhhHHHHHHHHHH-HHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAAL---HTDPTGLGSLTLFRSIV-QASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~s~~~~~-~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      +.++.+.+..|+..+.++..-    .+.+.+   ...++.+..+-....+. ..+...+..++++|+++.+++-+....+
T Consensus        24 ~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   24 KKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            445555666666555544432    222222   12455566665555553 3455677899999999999877666665


Q ss_pred             HHHHHHHHhh--h-----------------------------hHHHHHHHHHHHHHHhhhhHH-HHHHHHhhccCCCchh
Q 009914           82 AAATFLVAFS--S-----------------------------TFAQVAISRALNGIGLALVAP-AIQSLVADSTDDSNRG  129 (522)
Q Consensus        82 ~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~  129 (522)
                      .....++++.  |                             +.|...+..++.-+-.....+ .-..+..|.++.+|-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5555555442  1                             112233444444444344333 4578899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-c---cccCCCCchHHHHHHH----HHHHHHHHhhhhccC----CCCCCCCCCC
Q 009914          130 VAFGWLQLTSNIGSLVGGLFSVVMAP-M---TFMGIPGWRISFHIVG----LISVVVGTLVRLFAN----DPHFPDGGTA  197 (522)
Q Consensus       130 ~~~~~~~~~~~lg~~~g~~l~~~l~~-~---~~~~~~gw~~~f~~~~----~~~~i~~~~~~~~~~----~~~~~~~~~~  197 (522)
                      |..+++..+.++|.++++.+..++.+ .   ...+...|...+....    +.+++......++.+    +|...+...+
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~  259 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKK  259 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhc
Confidence            99999999999999999998888877 1   1122345654443222    222222222222221    1221111111


Q ss_pred             CCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHH-HHHHHHHHHhCCChhH----HHHHHHHHHHHH
Q 009914          198 NSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEK----TAFLMALFVIAS  272 (522)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~----~~~~~~~~~~~~  272 (522)
                      +++++++       ....+..+.++++|.+..+.+..+.+....... ...-..+++.--++.+    .|.+....++..
T Consensus       260 ~kk~k~k-------~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivt  332 (491)
T PF03219_consen  260 KKKKKPK-------MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVT  332 (491)
T ss_pred             ccccCCC-------ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH
Confidence            1111111       223355566778888777766555554432221 1122222322223322    344455556666


Q ss_pred             hccchhhhhhhhHhhhcC
Q 009914          273 SLGGLFGGRMGDFLSARF  290 (522)
Q Consensus       273 ~~~~~~~g~l~~~~~~~~  290 (522)
                      ++..++++.+.+|+|-+.
T Consensus       333 ii~~~l~~~iir~~GW~~  350 (491)
T PF03219_consen  333 IIMMFLSSNIIRRFGWRT  350 (491)
T ss_pred             HHHHHHHHHHHHHhhHHH
Confidence            667788888989888773

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.53  E-value=7.4e-06  Score=76.32  Aligned_cols=166  Identities=18%  Similarity=0.083  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHh-cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      +.+..-.++.|+...........++.+.++ .|.+..+.+...+.+..+.+++.+++.++..|+...|.+.+..++..+.
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666666 8889999999999999999999999999999999999999988888888


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 009914           85 TFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGW  164 (522)
Q Consensus        85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw  164 (522)
                      ++..+++++...++ +.++.|+..+..+|...++..+..+  +.....|..-....+|.++-|.+.|++.+.     .|-
T Consensus       316 ~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~-----~g~  387 (422)
T COG0738         316 LLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADM-----FGI  387 (422)
T ss_pred             HHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHh-----hhh
Confidence            88888888855444 5578899999999999999999998  334556666666778999999999999998     788


Q ss_pred             hHHHHHHHHHHHHHH
Q 009914          165 RISFHIVGLISVVVG  179 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~  179 (522)
                      ...+.+...++.+..
T Consensus       388 ~~~~~~~pllc~lyV  402 (422)
T COG0738         388 QLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888775555555444

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.50  E-value=1.2e-06  Score=62.49  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL   80 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~   80 (522)
                      .+...+++.......+.|.+|.+.++.|.|+.++|.+.++..+...++.+++|.++||+++++.++.....
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34556667777778888889999999999999999999999999999999999999999998887666544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.46  E-value=3.9e-06  Score=85.66  Aligned_cols=121  Identities=18%  Similarity=0.203  Sum_probs=94.8

Q ss_pred             HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 009914          253 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  332 (522)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (522)
                      ....+.....+..++..++.++|.++.|.++||+|||+     .++....+.....+....       ..+.+.+.++=+
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-----~~~~~~~~~~i~~~~~a~-------a~~~~~~~~~Rf  179 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-----VLLVSLLLFIIFGILTAF-------APNYWMFLIFRF  179 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH-----HHHHHHHHHHHHHHHHHH-------hCcHHHHHHHHH
Confidence            45667778888999999999999999999999999994     333322222221111111       355666888899


Q ss_pred             HHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          333 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       333 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.|++.+.... ....++.|.+++++|+.+..+ ......++.+++++.+++...
T Consensus       180 l~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~  232 (521)
T KOG0255|consen  180 LSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRD  232 (521)
T ss_pred             HHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            99999998888 899999999999999999999 888888999999999888873

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.46  E-value=9.9e-06  Score=73.47  Aligned_cols=339  Identities=11%  Similarity=0.029  Sum_probs=199.0

Q ss_pred             hhhHHHHHH-HhcCCChhhhH-HHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009914           25 LPGVYKEVG-AALHTDPTGLG-SLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRA  102 (522)
Q Consensus        25 ~~~~~~~~~-~~~g~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  102 (522)
                      -+.+.|++. .+.+++..++. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......+..+.++.+.+=+.-+
T Consensus        24 eP~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~  103 (433)
T KOG3810|consen   24 EPYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEF  103 (433)
T ss_pred             CCccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehh
Confidence            344455544 45566666543 1222222333444445557889888899988877777788888888999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhh
Q 009914          103 LNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~  182 (522)
                      ..|...+ ...+.++++-+..+++++.++.+...+..-.|...|..++..+.+..   ..++...=.+.-....+..++.
T Consensus       104 FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~---~~sy~~LN~ISL~~~~ia~~~A  179 (433)
T KOG3810|consen  104 FYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE---TLSYTTLNYISLAEVTIAVLLA  179 (433)
T ss_pred             hcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc---ccchhhhchhhHHHHHHHHHHH
Confidence            9998754 45588899999999999999999999999999999999999888651   1334444444433334444445


Q ss_pred             hhccCCCCCCCCCCC--------CCcccccchhh----hhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHH
Q 009914          183 RLFANDPHFPDGGTA--------NSDQVSSKSFR----SDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAM  249 (522)
Q Consensus       183 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  249 (522)
                      .++|+.++..-.+++        .++.....+..    ..+....++.....++|.+...-+.-.+... .+-..++...
T Consensus       180 ~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~  259 (433)
T KOG3810|consen  180 LFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQI  259 (433)
T ss_pred             hhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHH
Confidence            555543322111100        00001111111    1123334455666777776555444333333 3444445444


Q ss_pred             HHHHhC--CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHH
Q 009914          250 WLELTG--FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMH  327 (522)
Q Consensus       250 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (522)
                      .-++..  -.....|..-++..+.++++.+..|++.-++.|..    ..++...+    ...++..++  .......|+.
T Consensus       260 LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g----~~ll~~~s----~~~agllf~--m~~t~~Iw~~  329 (433)
T KOG3810|consen  260 LWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG----DLLLAVGS----AVQAGLLFI--MAQTQHIWVC  329 (433)
T ss_pred             HHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhh----HHHHHHHH----HHhhhhhhh--hhcccceehh
Confidence            444432  11122355556666777778888888766555542    12222221    111222222  1223445556


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhh
Q 009914          328 GLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  378 (522)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~  378 (522)
                      .+...++........+ +...-+++....+.-|...|+..++.-+...+-.
T Consensus       330 Ya~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT  379 (433)
T KOG3810|consen  330 YAGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILT  379 (433)
T ss_pred             hhhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhhe
Confidence            6777777777777777 5566666666778889999988877665554433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.45  E-value=0.0018  Score=62.32  Aligned_cols=273  Identities=13%  Similarity=0.039  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC---CChhhhHHHHHHHHH-HHHhhhhhHHHHHHHhchhHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALH---TDPTGLGSLTLFRSI-VQASCYPIAAYLAIRHNRAHVIALGAFLW   81 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~grr~~l~~~~~~~   81 (522)
                      ..++.+.+..++..+.++..    -.+.+.+.   ..+..+.++-+..-+ +..+..++.+++.+++.+.+++-+.+..+
T Consensus        27 ~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F  102 (509)
T COG3202          27 KKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF  102 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            34445555555555544443    34455554   346667788787777 66778889999999999999988777777


Q ss_pred             HHHHHHHHhh---------hh-----------------------HHHHHHHHHHHHHHhhhhHH-HHHHHHhhccCCCch
Q 009914           82 AAATFLVAFS---------ST-----------------------FAQVAISRALNGIGLALVAP-AIQSLVADSTDDSNR  128 (522)
Q Consensus        82 ~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r  128 (522)
                      ....+++++.         ++                       .|..-+..++.=+-.+.... .-.....|.++.+|-
T Consensus       103 ~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ea  182 (509)
T COG3202         103 LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEA  182 (509)
T ss_pred             HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            7777776653         11                       13333334444443343333 456778888888899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cCCCCchHHHHHHHHHHHHHHHhhhhccC----CCCCCCCCC-CC
Q 009914          129 GVAFGWLQLTSNIGSLVGGLFSVVMAPMTF-----MGIPGWRISFHIVGLISVVVGTLVRLFAN----DPHFPDGGT-AN  198 (522)
Q Consensus       129 ~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~-----~~~~gw~~~f~~~~~~~~i~~~~~~~~~~----~~~~~~~~~-~~  198 (522)
                      .|.+++++.+.+++..++..+..++.....     ......+..+.+.+..++++..+..++-+    +|....... ++
T Consensus       183 kRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk  262 (509)
T COG3202         183 KRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKK  262 (509)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhccc
Confidence            999999999999999999999988876310     00011445555555555555555444332    232210111 11


Q ss_pred             CcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHH--HHHHHHHHHhCCChhH---HHHHHHHHHHH-H
Q 009914          199 SDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL--SFAAMWLELTGFSHEK---TAFLMALFVIA-S  272 (522)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~---~~~~~~~~~~~-~  272 (522)
                      ++++.+       ....+..+.+.+.|.++.+.+...++.......  .|-...-+.+-.+.+.   .|.+....++. .
T Consensus       263 ~~~k~k-------~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~  335 (509)
T COG3202         263 KKKKLK-------LGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSL  335 (509)
T ss_pred             cccccc-------CcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence            111111       223345566677777776655555444422111  2222221112222222   23334444444 4


Q ss_pred             hccchhhhhhhhHhhhc
Q 009914          273 SLGGLFGGRMGDFLSAR  289 (522)
Q Consensus       273 ~~~~~~~g~l~~~~~~~  289 (522)
                      ++....++.+.+|.|-.
T Consensus       336 v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         336 VVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHhhhHHHHHHhhHH
Confidence            45566788888888765

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.44  E-value=0.00021  Score=72.14  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=123.1

Q ss_pred             hhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-chhHHHHHHHHHHHHHHHHHHhhhh--------
Q 009914           23 SLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-NRAHVIALGAFLWAAATFLVAFSST--------   93 (522)
Q Consensus        23 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~~~~--------   93 (522)
                      .....++.++.++++.+...+.-..+.+.-...+..+.++.++|-| ||-+++.++.++..++..+..+...        
T Consensus        55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            3456778888999999988888888888888888899999999975 8888999999888888665544321        


Q ss_pred             -----------------HHHHHHHHHHHHHHhhhhHHHHHHHHhhccC---CC---chhHHHHHHHHHHHHHHHHHHHHH
Q 009914           94 -----------------FAQVAISRALNGIGLALVAPAIQSLVADSTD---DS---NRGVAFGWLQLTSNIGSLVGGLFS  150 (522)
Q Consensus        94 -----------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~lg~~~g~~l~  150 (522)
                                       ...++.+.-+..+|.|..-|...++-+|-++   ++   .+...+.++....++|..++..+-
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                             1245666777788999999999999999998   32   234678899999999999998888


Q ss_pred             HhhhcccccCCCCchHHHHHHHHHHHHHHHhhh
Q 009914          151 VVMAPMTFMGIPGWRISFHIVGLISVVVGTLVR  183 (522)
Q Consensus       151 ~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~  183 (522)
                      .+.-+.     .+|.+.|.+..+...++.++..
T Consensus       215 vyiq~~-----~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  215 VYIQDN-----VGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             Hhhhhc-----ccceeeccHHHHHHHHHHHHHH
Confidence            887666     8999999988877666655544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.44  E-value=4.7e-06  Score=83.57  Aligned_cols=131  Identities=18%  Similarity=0.205  Sum_probs=83.4

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          246 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       246 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      .++.+.+++|-+ ....++.....++..++.++.|+++|.+|||.     ..+...  ++    ..+...... ..++.-
T Consensus        66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----~~i~g~--~l----~vvG~Iv~a-tA~~~~  132 (599)
T PF06609_consen   66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----FFIIGS--LL----GVVGSIVCA-TAQNMN  132 (599)
T ss_pred             HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----HHHHHH--HH----HHhHHHHhh-cCCcHH
Confidence            345555678765 44667778888899999999999999999994     222111  11    111111111 123344


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCcc
Q 009914          326 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  392 (522)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~~  392 (522)
                      .++....+.|++.+....  ....++|..|.+.|....++.....-....++|.+...+... .+|+
T Consensus       133 ~~iag~~l~GvgaG~~~~--~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WR  196 (599)
T PF06609_consen  133 TFIAGMVLYGVGAGVQEL--AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWR  196 (599)
T ss_pred             HHHHHHHHHHHhhHHHHH--HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcc
Confidence            467788888888765554  566689999999998887776655444445666666555444 4554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.43  E-value=8.5e-06  Score=72.68  Aligned_cols=138  Identities=16%  Similarity=0.176  Sum_probs=89.9

Q ss_pred             chhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          239 FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                      ..|.+..|.|..-+++|+|..+...+.....++..+ .++.|.+.|+++.+      ..+.............+.+....
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~------~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW------VVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH------HHHHHHHHHHHHHHHHHHHHHhC
Confidence            345666677777778999999999999999999876 48899999999987      22222222222222222222222


Q ss_pred             CC-CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          319 DD-PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       319 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      .. ....+.+.+..++.+.+..+... .......+.+| ++||++.|+.-....+++++-..+...+.
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~t-a~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNT-ASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhh-HHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            21 23445455566666666666666 44445556777 67999999999998888776666544443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.37  E-value=2e-06  Score=84.87  Aligned_cols=122  Identities=15%  Similarity=0.050  Sum_probs=94.5

Q ss_pred             HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 009914          252 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  331 (522)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (522)
                      ++.++...+.+.+.+++.++.+++.+.++.+.||++..+     .+.. ...+.++ +..+...     ..+.+.+++.-
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~-----~l~~-~~~~w~~-~~~~~~~-----~~s~~~~ialr  141 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK-----GLSV-SGILWGL-FGFLTAA-----VHSFPGLIALR  141 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH-----HHHH-HHHHHHH-HHHHHHH-----HhhhHHHHHHH
Confidence            357788889999999999999999999999999998542     2221 1111111 1111111     23445577889


Q ss_pred             HHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 009914          332 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  386 (522)
Q Consensus       332 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~  386 (522)
                      ++.|++.+...| ....++...+.+++|+..+|+.+....+|+++|+.+...+..
T Consensus       142 ~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  142 FLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            999999999999 899999999999999999999999999999999999888765

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.31  E-value=0.0002  Score=67.63  Aligned_cols=357  Identities=12%  Similarity=0.004  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH--HHHHHHH--
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV--IALGAFL--   80 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~--l~~~~~~--   80 (522)
                      .......++..+-....++.+....+++.+.+-.+.. .-.....+.+...+...+...+--+...|..  +..+...  
T Consensus        17 ~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~   95 (406)
T KOG1479|consen   17 NLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIA   95 (406)
T ss_pred             ccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555566677788888888887755444 3333344444444444444443333332221  1111111  


Q ss_pred             -HHHHHHHHHh-------hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHH--
Q 009914           81 -WAAATFLVAF-------SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFS--  150 (522)
Q Consensus        81 -~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~--  150 (522)
                       ..+..+..+.       ...+...++.-.+.+.+.+..........++ +|++.    ..-+..+.++++++..++.  
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y----tqavm~G~a~aG~l~Sl~~i~  170 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY----TQAVMSGQALAGTLTSLLRIL  170 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH----HHHHHhcchhHhHHHHHHHHH
Confidence             1111122222       1245666778888888888888777777776 45442    2233333444443333322  


Q ss_pred             -HhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCC---CCCCC-----CCcccccchhhhhhHHHHHHhhhh
Q 009914          151 -VVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP---DGGTA-----NSDQVSSKSFRSDVKVLIQEAKSV  221 (522)
Q Consensus       151 -~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  221 (522)
                       ....+.   ...+-..-|.+..++.+++.+....+++.|-.+   +++.+     .+++.+++...   .+.....+.+
T Consensus       171 tka~~~~---~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~i  244 (406)
T KOG1479|consen  171 TKAAFSD---SRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSL---SNEDDSLWDI  244 (406)
T ss_pred             HHHhcCC---CCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhccccccccccccccccccc---ccccchHHHH
Confidence             222221   112222333333343344444434344433111   00000     00000111111   1100022222


Q ss_pred             hcchhHHHHHHHhhhccchhHHHHHHHHHHHH---hCC-ChhHHHHHHHH-HHHHHhccchhhhhhhhHhhhcCCCchhH
Q 009914          222 IKIPSFQIIVAQGVTGSFPWSALSFAAMWLEL---TGF-SHEKTAFLMAL-FVIASSLGGLFGGRMGDFLSARFPNSGRI  296 (522)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  296 (522)
                      +++-......+ .+.+   ....+..|-+..+   .+. +....-.+... +.+...+|.+...++..+-+|.      +
T Consensus       245 ~~k~~~~~~~i-~lvy---~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~------l  314 (406)
T KOG1479|consen  245 FKKIKDLAFNI-FLVY---FVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRK------L  314 (406)
T ss_pred             HHHHHHHhhch-heee---eeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCce------e
Confidence            22211111111 1111   1122334655532   122 23334455555 7788888877776665543232      2


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhc
Q 009914          297 ILAQISSLSAIPLAALLLLV-LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSS  375 (522)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  375 (522)
                      ......=...+++..++... .+..-...++......++|+..|.... ..+.+..+.+|++++-. .|....+.-.++.
T Consensus       315 ~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts-l~m~~aPk~v~~~e~e~-aG~~m~~fl~~Gl  392 (406)
T KOG1479|consen  315 TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS-LIMMYAPKQVKPSEKEA-AGNLMVFFLVGGL  392 (406)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh-heehhcCCCCChHHHHH-HHHHHHHHHHHHH
Confidence            22222222222222222110 111112234466788889999998888 88888888888776644 4444444444444


Q ss_pred             hhhHHHHHHH
Q 009914          376 FAPPVVGILA  385 (522)
Q Consensus       376 i~~~~~g~l~  385 (522)
                      ....+.+++.
T Consensus       393 ~~G~~~s~l~  402 (406)
T KOG1479|consen  393 ALGSLLSWVF  402 (406)
T ss_pred             HHhhHHHHHH
Confidence            4444444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=4.8e-05  Score=77.28  Aligned_cols=179  Identities=12%  Similarity=0.025  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            5 TVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      ++.+..+.+..+....+.+......+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.++
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            34455566666666666677778888888888877554 44555566666777777899999999999999999999999


Q ss_pred             HHHHHhhhhH-------------HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 009914           85 TFLVAFSSTF-------------AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSV  151 (522)
Q Consensus        85 ~~~~~~~~~~-------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~  151 (522)
                      .++++.....             ..+....+..........+....+.+|.+|.+-|+++.++......+...+-.....
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9888765221             112222222223333344455578899999999999999887777665554443333


Q ss_pred             hhhcccccCCCCchHHHHHHHHHHHHHHH-hhhhccCCC
Q 009914          152 VMAPMTFMGIPGWRISFHIVGLISVVVGT-LVRLFANDP  189 (522)
Q Consensus       152 ~l~~~~~~~~~gw~~~f~~~~~~~~i~~~-~~~~~~~~~  189 (522)
                      .+...     .++...|...+..+.+... ..+++.+|.
T Consensus       453 ~~~~~-----~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  453 FITEA-----LGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHh-----ccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            33332     2345666666666666665 455544443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.28  E-value=2.2e-05  Score=74.29  Aligned_cols=122  Identities=17%  Similarity=0.145  Sum_probs=84.0

Q ss_pred             CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--chhHHHHHHHHH
Q 009914          256 FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP--STPVMHGLVLVV  333 (522)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  333 (522)
                      ++....+.+.+...++.++|+++.|++.||+|||+..     -....+.+  ......-+.....+  ...+.+...=++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-----G~~liImI--i~t~~~~~s~~~~~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-----GKELIIMI--ICSALSGLSVGTTSPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-----hHHHHHHH--HHHHHhccCCCCCCCcchhhHHHHHHHH
Confidence            5667788899999999999999999999999999642     11111111  11111111111112  223445556678


Q ss_pred             HHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          334 TGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       334 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      +|+|.|.=+| ...++.+|....+.||.-.+...+++..|...|.++.-.+.
T Consensus       154 LGiGIGGDYP-lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  154 LGIGIGGDYP-LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             hhccccCCCc-chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence            9999999999 99999999999999999988888877777666655544443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.10  E-value=4.4e-05  Score=74.15  Aligned_cols=108  Identities=24%  Similarity=0.386  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh---h------HHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCC---chhHHHHHHHHHH
Q 009914           72 HVIALGAFLWAAATFLVAFSS---T------FAQVAISRALNGIGLALVAPAIQSLVADSTDDS---NRGVAFGWLQLTS  139 (522)
Q Consensus        72 ~~l~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  139 (522)
                      |+++++.+++.+|.++..++.   +      .+.++++..+.++|.|+.-|...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            578888899999988855442   2      357889999999999999999999999999765   4677889999999


Q ss_pred             HHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          140 NIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       140 ~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      ++|..++..+.+++-+.     .+|.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~-----~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQN-----YGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHC-----S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccc-----cchhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999887     89999999998877766665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.05  E-value=8.8e-08  Score=95.90  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Q 009914          259 EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI  338 (522)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  338 (522)
                      ...++..+...++.++|+++.|+++||+|||+..     ....  .+. .+..+. ........+.+.+.+.-++.|++.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~-----~~~~--~~~-~i~~~~-~~~~~~~~~~~~~~~~R~~~G~~~  116 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL-----IISA--LLM-IIGSIL-IAFAPSYNNFWMLLIGRFLIGFGI  116 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccc-----cccc--ccc-cccccc-cccccccccccccccccccccccc
Confidence            4567888899999999999999999999999631     1111  110 011111 111111124555677788899999


Q ss_pred             hccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHH
Q 009914          339 SWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  381 (522)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~  381 (522)
                      +...+ ....++.|..|++.|+...++.+....+|..++..+.
T Consensus       117 g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  117 GGAYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            98888 8999999999999999999998888777777666554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.99  E-value=0.00067  Score=63.01  Aligned_cols=125  Identities=22%  Similarity=0.238  Sum_probs=76.4

Q ss_pred             HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 009914          252 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  331 (522)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (522)
                      +++|++..+++.++.......++...+.|.++||+|||+.      .    +..++.-...++.   ...++...+++.=
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~------c----l~~cily~~scl~---k~~~~~~~L~~GR  128 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA------C----LLFCILYSLSCLT---KHSSNYPVLLLGR  128 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH------H----HHHHHHHHHHHHH---HhccccHHHHHHH
Confidence            5799999999999999999999999999999999999941      1    1111111111111   1234455566677


Q ss_pred             HHHHHHHhccCCCcchhh-hhhh----cCcchhHHHHHHHHHH-HHHHhchhhHHHHHHHHHhhCc
Q 009914          332 VVTGLFISWNAPATNNPI-FAEI----VPEKSRTSVYAMDRSF-ESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       332 ~~~g~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~g~~~~~-~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ++.|++...... ..-++ +.|.    +|++..+...+...+. +.+...++..++.++.+. .+.
T Consensus       129 vlgGiaTSLLfS-~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~-~~~  192 (354)
T PF05631_consen  129 VLGGIATSLLFS-AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW-FGF  192 (354)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH-hCC
Confidence            777877776555 33333 3333    3445555555555533 334445555566666666 444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.96  E-value=0.00023  Score=70.08  Aligned_cols=124  Identities=15%  Similarity=0.164  Sum_probs=111.7

Q ss_pred             HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHH-HHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 009914           31 EVGAALHTDPTGLGSLTLFRSIVQASCYPIAA-YLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLA  109 (522)
Q Consensus        31 ~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G-~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  109 (522)
                      ++...+++++.+.+.+.+...+...+++.+.. .+...+|-|+++..|+....+..+..+++.+.|+++...++.++. .
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            44557899999999999999999999998877 777788999999999999999999999999999999988888775 7


Q ss_pred             hhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009914          110 LVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP  155 (522)
Q Consensus       110 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~  155 (522)
                      ...|+..+.++.+.+++++|+.+++......+..+++|.+-+.+..
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            8888999999999999999999999999999999999999887754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.92  E-value=2.8e-05  Score=75.44  Aligned_cols=130  Identities=14%  Similarity=0.115  Sum_probs=91.3

Q ss_pred             HHHHHH--hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhh-cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc-h
Q 009914          248 AMWLEL--TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSA-RFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS-T  323 (522)
Q Consensus       248 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  323 (522)
                      -.|+++  .+.+.+..|++.+...++.++++++.|+...|.+. |+|    ++...+.    ..++-++++.....++ .
T Consensus        58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P----li~s~ii----~~~g~llY~~l~~~~~~~  129 (488)
T KOG2325|consen   58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP----LIVSFLI----AIIGNLLYLALAYVPNGV  129 (488)
T ss_pred             chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC----HHHHHHH----HHHHHHHHHHHHhcccch
Confidence            355654  78888899999999999999999999999999875 433    2222221    1222233322333333 5


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .++.+++-++.|++.+....  .-+++++..-.++|.++++..+....++..+||.+...+...
T Consensus       130 ~y~mL~~R~l~Gvg~~n~a~--lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  130 KYLMLVARILTGVGVGNFAV--LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHHHHHcCcCcccHHH--HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            56677778888888765555  788888877778899999998888888888888876555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.87  E-value=0.0021  Score=63.23  Aligned_cols=114  Identities=12%  Similarity=0.051  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCchhHHHHHHHHH
Q 009914          260 KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD------DPSTPVMHGLVLVV  333 (522)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  333 (522)
                      ..-.+...+.++-.+|+.+..+..- .++|..   .+....+.=++.+++..++  ....      .-.+.+..++..++
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~---~l~i~s~~R~iFIPlf~lc--n~~~~~~~p~~~~~d~~~~~~~~l  381 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSR---WLPILSFLRVLFIPLFLLC--NYPQRSRLPVFFPGDAYFIILMLL  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEe-eCCCcc---chHHHHHHHHHHHHHHHHh--cCCccccCCeeecccHHHHHHHHH
Confidence            4456677788999999986654311 111110   1222222222222222222  1110      11234456677899


Q ss_pred             HHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHH
Q 009914          334 TGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  380 (522)
Q Consensus       334 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~  380 (522)
                      +|+..|.... ..+.+..+.+++++|..+-.+......+|-.+|..+
T Consensus       382 ~gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       382 FGFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888 778888888888888777777777666666666554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.86  E-value=0.0011  Score=68.30  Aligned_cols=140  Identities=18%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHh-hhcCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 009914          241 WSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLSAIPLAALLLLVLP  318 (522)
Q Consensus       241 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (522)
                      |++...+..|+. .+|++...+..+...+....-+..+++|+++|++ |+++     .+.. ..++..+....+.+...+
T Consensus         4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-----tIl~-~~ii~~lG~~llai~a~~   77 (654)
T TIGR00926         4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-----TILY-LSIVYVVGHALLSFGAIP   77 (654)
T ss_pred             eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHH-HHHHHHHHHHHHHhccCc
Confidence            455556666664 5899988888888887777778888999999975 5552     2221 111111111111111111


Q ss_pred             CC--CchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc---hhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          319 DD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       319 ~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ..  .......++.+.+.++|.+..-+ ...+...|.++++   .+-+.+.+.....++|+.+++.+.+++.+.
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~  150 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD  150 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhcccccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11  11123355677788888888888 8889999888654   366788888888999999999999988765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.76  E-value=0.00086  Score=63.77  Aligned_cols=133  Identities=15%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             HHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Q 009914          247 AAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  325 (522)
Q Consensus       247 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (522)
                      ...+.+. +| +...+-++..++.+..+...+.+.|+.||+|-|.      .....+..-++....=+....+..++..+
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~------a~llgt~ln~iGa~Ir~iss~p~v~~~f~  139 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRT------ALLLGTVLNGIGAWIRLISSLPFVPPLFR  139 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHH------HHHHHHHHHHHHHHHhhhccCccccccch
Confidence            3344543 66 6777888889999999999999999999999983      22222222222211111222222223333


Q ss_pred             --HHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          326 --MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       326 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                        +......+.+........ .-.-+..-.+|+++|+++..+..+.+.+|.+++..+...+..+
T Consensus       140 ~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  140 RPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence              444555666665555544 3334555668999999999999988889988888877777665

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.76  E-value=0.00093  Score=58.90  Aligned_cols=247  Identities=13%  Similarity=0.071  Sum_probs=112.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccc
Q 009914          126 SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSK  205 (522)
Q Consensus       126 ~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (522)
                      ++|+....+...+.++|.++..+.--.-.+.......+|++++.+.+++.++-.++..++-++-+....++++++.+...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~   81 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTL   81 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccc
Confidence            55677777777788888877654422211111111256999999999888777776666543311111111111111010


Q ss_pred             hhhhhhHHHHHHhhhhhcchhHHHHHHHhhhc--cchhH-HHHHHHHHHHHhC--C----Chh----HHHHHHHHHHHHH
Q 009914          206 SFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG--SFPWS-ALSFAAMWLELTG--F----SHE----KTAFLMALFVIAS  272 (522)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~g--~----~~~----~~~~~~~~~~~~~  272 (522)
                      ..       ....+..+|++.-|..+......  ...+. ...+...+....+  .    +..    .......+...+.
T Consensus        82 ~~-------~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~  154 (267)
T PF07672_consen   82 SK-------KPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGY  154 (267)
T ss_pred             cc-------cchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHH
Confidence            01       12334455655544433322222  11221 1122222222211  1    111    1122333334444


Q ss_pred             hccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCC-chhHHHHHHHHHHHHHHhccCCCcchhhh
Q 009914          273 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL-VLPDDP-STPVMHGLVLVVTGLFISWNAPATNNPIF  350 (522)
Q Consensus       273 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  350 (522)
                      .+|.+..|...+..-+|+    +.+...+.+.+.+.+...+.. ...... .....+.+..++.|++.-...+ +...+.
T Consensus       155 ~~G~~~ig~~nkt~~kRk----~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~-ViL~lP  229 (267)
T PF07672_consen  155 FLGPFTIGLWNKTNYKRK----PFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG-VILNLP  229 (267)
T ss_pred             hhhceeeccchhhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH-HHhcCh
Confidence            566667777665433333    233333322222222222221 112111 1233355555666666555555 455555


Q ss_pred             hhhc--CcchhHHHHHHHHHHHHHHhchhhHHHHHH
Q 009914          351 AEIV--PEKSRTSVYAMDRSFESILSSFAPPVVGIL  384 (522)
Q Consensus       351 ~~~~--~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l  384 (522)
                      .|.-  .|++-|...|+...++++.-.+.-.+...+
T Consensus       230 hEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i  265 (267)
T PF07672_consen  230 HEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI  265 (267)
T ss_pred             hhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5542  456678888888888777666555554433

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.73  E-value=0.00017  Score=51.32  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcC
Q 009914          241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  290 (522)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  290 (522)
                      .....++|.|+++.|+|+.+.|.+.++..+..+++.+++|+++||.++++
T Consensus        17 g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen   17 GCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            34557899999999999999999999999999999999999999999984

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.0031  Score=58.24  Aligned_cols=167  Identities=13%  Similarity=0.052  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC-hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAALHTD-PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      ...+.+.+++++.....-++.+....+..+++-+ -.........-.....+..++.|...|+..|+|++...+.+-=++
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlS  106 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLS  106 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHH
Confidence            3445678888888888888888888777777643 334444444555566778888899999999999877765543222


Q ss_pred             HH------HHHhh-h-----hHHHHHHHHHHHHHHhhhhHHH--HH--HHHhhcc----CCCchhHH---HHHHHHHHHH
Q 009914           85 TF------LVAFS-S-----TFAQVAISRALNGIGLALVAPA--IQ--SLVADST----DDSNRGVA---FGWLQLTSNI  141 (522)
Q Consensus        85 ~~------~~~~~-~-----~~~~l~~~r~l~G~~~~~~~~~--~~--~~i~~~~----~~~~r~~~---~~~~~~~~~l  141 (522)
                      .+      +..+. +     +++.+..+.++.-...+...-.  +.  ..-.||.    ..+.+...   ++.....-..
T Consensus       107 v~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~  186 (503)
T KOG2601|consen  107 VIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQS  186 (503)
T ss_pred             HHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhh
Confidence            22      22222 2     4455544444433322221111  11  1122333    23444444   4666677777


Q ss_pred             HHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHH
Q 009914          142 GSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVV  177 (522)
Q Consensus       142 g~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i  177 (522)
                      -.++.|++.|.+...     .+-|..-.+.++-+++
T Consensus       187 tn~Lapv~tg~Iitf-----vsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  187 TNLLAPVITGLIITF-----VSLRASAGTFAAWALV  217 (503)
T ss_pred             hhchhhhhhccccee-----echhhhhhhhHHHHHH
Confidence            889999999999877     5666644444444444

>PRK03612 spermidine synthase; Provisional

Probab=97.50  E-value=0.019  Score=57.95  Aligned_cols=165  Identities=13%  Similarity=0.080  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHH-HHHHH-HHHHHHH
Q 009914           12 NLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIAL-GAFLW-AAATFLV   88 (522)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~-~~~~~-~~~~~~~   88 (522)
                      .+..++.++....+-.+.. .+...+|.+..+.+.+.+++..+..+++.+++++.++.-++....- ...+. .++..+.
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll   99 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALIL   99 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444333333332 3444578899999999999999999999999988744333322111 11111 1111111


Q ss_pred             Hhhhh----H-HHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccCCC
Q 009914           89 AFSST----F-AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAP-MTFMGIP  162 (522)
Q Consensus        89 ~~~~~----~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~-~~~~~~~  162 (522)
                      .....    + ..++...++.++..|+..|....+..+.. .++-++..|.......+|.++|.++.+++.- .     .
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~-----l  173 (521)
T PRK03612        100 YAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPR-----L  173 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh-----c
Confidence            11111    1 12234455667788888888777766533 2235677899999999999999999887764 3     5


Q ss_pred             CchHHHHHHHHHHHHHHHhh
Q 009914          163 GWRISFHIVGLISVVVGTLV  182 (522)
Q Consensus       163 gw~~~f~~~~~~~~i~~~~~  182 (522)
                      |-....++.+.+.++++++.
T Consensus       174 G~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        174 GLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             chHHHHHHHHHHHHHHHHHH
Confidence            65555555555555554433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.43  E-value=0.0014  Score=58.88  Aligned_cols=314  Identities=14%  Similarity=0.063  Sum_probs=170.9

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 009914           43 LGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADS  122 (522)
Q Consensus        43 ~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  122 (522)
                      .|.+.-+-.+...+..+.+-.+.||+.--.=+.+..++.+.+.++.+++++.++-+.+..+..++.|.......++-+. 
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence            5677777778888888888889998754333444556677788888899999998888888888888777665555444 


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCc--
Q 009914          123 TDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD--  200 (522)
Q Consensus       123 ~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--  200 (522)
                      +++.    ..+.+..+.+.++++|..--..+.+.   -...-|...++...+.++.++..+++.++|+......-++.  
T Consensus       143 Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~---~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~  215 (409)
T KOG3880|consen  143 YPSI----VIAGWSSGTGGAGLIGASSYAFLTSW---ANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTE  215 (409)
T ss_pred             CCCc----eeccccCCCCcchhhhhhHHHHHhhh---cCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccce
Confidence            3322    34555555666666666555555442   11566788888877777777777777666654332111000  


Q ss_pred             -----------cccc--chhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccchhHHHH-HHHHHHH--HhCCCh---hHH
Q 009914          201 -----------QVSS--KSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALS-FAAMWLE--LTGFSH---EKT  261 (522)
Q Consensus       201 -----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~g~~~---~~~  261 (522)
                                 .+.+  .......++.++..+.++     +.++-....+..-|.+.. ..+..+-  ..|++.   .|.
T Consensus       216 ~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll-----~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqY  290 (409)
T KOG3880|consen  216 IIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLL-----KYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQY  290 (409)
T ss_pred             eccCCCCcccccccccCchhhhcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcc
Confidence                       0001  111122233333333322     222222222333232222 2333221  133332   234


Q ss_pred             HHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhcc
Q 009914          262 AFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWN  341 (522)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  341 (522)
                      -+....+.++..+.+--.-..--+         .+....+..+.-+.  ...+-.+....+..+++.+.++.-|+..|..
T Consensus       291 RwyqvlYQlGVFiSRSS~~~~~~p---------~l~~LailQ~vNl~--ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas  359 (409)
T KOG3880|consen  291 RWYQVLYQLGVFISRSSINLFTMP---------YLWLLAILQFVNLL--FFLLQAWYWFTPSIWIVFALILFEGLLGGAS  359 (409)
T ss_pred             hhhheeeeeeEEEEeccceEEech---------HHHHHHHHHHHHHH--HHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence            566666777666555332221111         01111111111111  1111111111345555667777778877776


Q ss_pred             CCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHH
Q 009914          342 APATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  381 (522)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~  381 (522)
                      +. ..+--+.+..+++.|--+++.....-.+|..++..++
T Consensus       360 YV-NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  360 YV-NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HH-HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            66 5556666767789999999888877776666555543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.30  E-value=0.0019  Score=63.86  Aligned_cols=153  Identities=13%  Similarity=0.103  Sum_probs=111.3

Q ss_pred             CChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHH
Q 009914           38 TDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFS----------STFAQVAISRALNGIG  107 (522)
Q Consensus        38 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~  107 (522)
                      .++...|.+..+..++..++..+..++.-+..-|+++..+.++.++..+.-...          ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            889999999988899999999999888888888998888777766655432211          2222233445666666


Q ss_pred             hhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          108 LALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM---GIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       108 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~---~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      ....+.+...++++..|+..-+..++++....++|..++..++..+.+...-   +..+-.+..++..+..++...+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            6777778889999999999999999999999999999999999988765311   1123345555666666555666656


Q ss_pred             ccCCCC
Q 009914          185 FANDPH  190 (522)
Q Consensus       185 ~~~~~~  190 (522)
                      +|++.+
T Consensus       412 Lp~~~~  417 (433)
T PF03092_consen  412 LPPQKR  417 (433)
T ss_pred             cCCCch
Confidence            665433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.08  E-value=8.9e-05  Score=74.80  Aligned_cols=134  Identities=9%  Similarity=-0.048  Sum_probs=2.7

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH--HHhCCC-----
Q 009914          247 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL--LLVLPD-----  319 (522)
Q Consensus       247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----  319 (522)
                      ++.+=++++++..+.|++.+.+-++.++..++..++.+|..|.+      ++....+++++......  -+....     
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr------wig~g~~~~~~g~~l~~lPhf~~~~y~~~~   99 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR------WIGIGALLMGLGSLLFALPHFLSGPYSYEE   99 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc------eeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence            34444579999999999999999999999999888887744332      12111111111111100  000000     


Q ss_pred             -------------------------------------CCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHH
Q 009914          320 -------------------------------------DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSV  362 (522)
Q Consensus       320 -------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (522)
                                                           ......++++..++.|+|....++ +..+++-|.++++..+..
T Consensus       100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~splY  178 (539)
T PF03137_consen  100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSPLY  178 (539)
T ss_dssp             ----------------------------------------------------SSS-------------------------
T ss_pred             ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCccc
Confidence                                                 000124556677888888888888 899999999999999999


Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          363 YAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       363 ~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .|+..++..+|-++|-.++|...+.
T Consensus       179 iGi~~~~~~lGPa~Gf~lg~~~L~~  203 (539)
T PF03137_consen  179 IGILYAMSILGPALGFLLGSFCLRI  203 (539)
T ss_dssp             -------------------------
T ss_pred             hhhhhHHhhccHHHHHHHHHHHHhc
Confidence            9999999999988888888888766

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.92  E-value=0.089  Score=51.45  Aligned_cols=146  Identities=13%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLV   88 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   88 (522)
                      +...++..+-++..-.+......+...-|.++..+|..-+...+....+.+...++.+|+|..|.-+++...-.++..++
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~  340 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALC  340 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence            34444444444444445666666666779999999999999999999999999999999998887666665443332222


Q ss_pred             H---hh---h----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009914           89 A---FS---S----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        89 ~---~~---~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      .   +.   +    +...++.+-++.=+|.=.+.....-++.|..|+++|+...|.-.+..++--++-..++-.+.
T Consensus       341 v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  341 VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2   11   1    33444555555556666677788899999999999999999999999988888877765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.91  E-value=0.06  Score=54.41  Aligned_cols=130  Identities=15%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHH-HHHHHHHHHHhCCCCCchhHHHHHHH
Q 009914          253 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS-AIPLAALLLLVLPDDPSTPVMHGLVL  331 (522)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (522)
                      -+|-+....+.+.+++.++..+|+.+++++.++..++      .....+.+.+ +.....+...................
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~------~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~  117 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG------FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLV  117 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888888888888888888887776433322      1111111111 11111111111111111112233445


Q ss_pred             HHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhC
Q 009914          332 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       332 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      ++.++..|...| ....+..+.. .+..+...|-......+|+.+|+.+.+++.--..|
T Consensus       118 ~~~~~l~G~~~P-l~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG  174 (521)
T PRK03612        118 LLIGLLIGMEIP-LLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence            566777777666 4444433322 23456778888999999999999999988764355

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.06  Score=52.67  Aligned_cols=145  Identities=16%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH---HHhcCCChh-hhHHHHHHHHHHHHhhhhhHHHHHH---HhchhHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEV---GAALHTDPT-GLGSLTLFRSIVQASCYPIAAYLAI---RHNRAHVIALGAFL   80 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~s~~-~~g~~~s~~~~~~~i~~~~~G~l~D---r~grr~~l~~~~~~   80 (522)
                      ++.+....+..+.....+....|.-   ....+.+.. ..+...-...++..++..+.+.+.+   |+||++.+.++..+
T Consensus       242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~  321 (461)
T KOG3098|consen  242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIII  321 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHH
Confidence            3444455555555555544444432   222233322 2333333444555555666666665   47899999999888


Q ss_pred             HHHHHHHHHhh------------------hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 009914           81 WAAATFLVAFS------------------STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIG  142 (522)
Q Consensus        81 ~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg  142 (522)
                      ..++.++.-+.                  +++...++..++.|++.+......+.++...+ +++|..+.++...-..++
T Consensus       322 ~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~  400 (461)
T KOG3098|consen  322 HLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVA  400 (461)
T ss_pred             HHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Confidence            88877776543                  23566788889999999999999999999999 677899999999888888


Q ss_pred             HHHHHHHHHhh
Q 009914          143 SLVGGLFSVVM  153 (522)
Q Consensus       143 ~~~g~~l~~~l  153 (522)
                      ..++.......
T Consensus       401 s~v~~f~~~~~  411 (461)
T KOG3098|consen  401 SCVAFFFSPYL  411 (461)
T ss_pred             HHHHhhhhhhh
Confidence            87776655444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.80  E-value=0.079  Score=43.69  Aligned_cols=110  Identities=9%  Similarity=-0.004  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhcc
Q 009914          262 AFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWN  341 (522)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  341 (522)
                      -.-.++......++.++.+.+.+++|.|+     .+... ...-.+  -....+     ..+.+.++....+.|++.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~-----sm~lg-~~~y~~--y~~~~~-----~~~~~~l~~~s~l~G~~~a~l  106 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKW-----SMILG-SLGYAI--YIASFF-----YPNSYTLYPASALLGFGAALL  106 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHH-----HHHHH-HHHHHH--HHHHHH-----hhhHHHHHHHHHHHhhhhHHh
Confidence            34445556666777788899999999983     11111 111111  111111     133455778888999999988


Q ss_pred             CCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHH
Q 009914          342 APATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  385 (522)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~  385 (522)
                      .. ..-.++.+...++.+++..|+...+.+.+..+|..+.-.+.
T Consensus       107 W~-aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  107 WT-AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hH-hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88 77788999999999999999999999988777777655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.71  E-value=0.067  Score=48.95  Aligned_cols=139  Identities=11%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      .+..+..+..+..........+......++|    .++  .....+..+..+.+.+.+..++|-|.++.++...+.....
T Consensus        30 nv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA  103 (390)
T KOG3097|consen   30 NVLILSIAFLLTFTAYLGLQNLQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA  103 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4455555555544443333333333322333    122  1223344455566666999999999999988877654322


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCC--Cch---------hHHHHHHHHHHHHHHHHHHHHHHh
Q 009914           87 LVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDD--SNR---------GVAFGWLQLTSNIGSLVGGLFSVV  152 (522)
Q Consensus        87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r---------~~~~~~~~~~~~lg~~~g~~l~~~  152 (522)
                       .-+-+.+..++-.-...|++.+..+..--+++++.-..  +.|         .+..+.+.+...-+...|..++..
T Consensus       104 -~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issl  179 (390)
T KOG3097|consen  104 -ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSL  179 (390)
T ss_pred             -hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHH
Confidence             22336788889999999999998887666666554432  223         345565555555555555444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.47  E-value=0.059  Score=51.78  Aligned_cols=112  Identities=11%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             ChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHH--HHH---HHHHHHHhhhhHHHHHHHHHHHHHHhhhhHH
Q 009914           39 DPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAF--LWA---AATFLVAFSSTFAQVAISRALNGIGLALVAP  113 (522)
Q Consensus        39 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~--~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  113 (522)
                      ...+.-+...++.+|..++.--...+  |+  |++.+.+.+  +..   +.....-+.++.|.+++.-+..|+..|..++
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            34566677777777766654332211  33  333222222  211   2222233467899999999999999999999


Q ss_pred             HHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009914          114 AIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus       114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      .....+.+..++++|..+++....+.++|..++.+++-.+-
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887764

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.15  E-value=0.17  Score=47.18  Aligned_cols=131  Identities=19%  Similarity=0.293  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCCh--hHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 009914          246 FAAMWLELTGFSH--EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  323 (522)
Q Consensus       246 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (522)
                      ..+.+..+.+.+.  ...++......+...++.++.|++.||.|+|+     ........   .............  ..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~~~~~~---~~~~~~~~~~~~~--~~   93 (338)
T COG0477          24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-----VLIIGLLL---FLLGTLLLALAPN--VG   93 (338)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-----HHHHHHHH---HHHHHHHHHhCcc--ch
Confidence            4555666665555  46788888888888888899999999997772     22222211   1111111111111  23


Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCc-chhHHHHHHHHH-HHHHHhchhhHHHHHHHHH
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE-KSRTSVYAMDRS-FESILSSFAPPVVGILAQH  387 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~i~~~~~g~l~~~  387 (522)
                      .+.........|++.+...+ ...+++.+..|+ +.++...+.... ...++..++|.+.+.+...
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455557777776666 788999999987 678888888888 5677778888777766655

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.10  E-value=0.53  Score=46.54  Aligned_cols=34  Identities=9%  Similarity=-0.059  Sum_probs=21.7

Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcch
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS  358 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  358 (522)
                      ..+..++..++.|++.+.... ....+.+ .+|++.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~-s~~gla~-~fp~~~  138 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQG-SLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcc-cchhhcc-cCCHHH
Confidence            344556667778888887777 5666655 456443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.04  E-value=0.05  Score=55.98  Aligned_cols=139  Identities=12%  Similarity=0.018  Sum_probs=91.5

Q ss_pred             HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHH-HHHHHHHHHH-------HH----HhCC-
Q 009914          252 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS-SLSAIPLAAL-------LL----LVLP-  318 (522)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~----~~~~-  318 (522)
                      ++++++..+.|++...+-++..+..++..+...|..|.+..-....+..+. ++..++=...       ..    ...+ 
T Consensus       125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~  204 (735)
T KOG3626|consen  125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS  204 (735)
T ss_pred             hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence            358999999999999888888888888888877765543211111111111 1111110000       00    0000 


Q ss_pred             -------------------------CCCc--hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHH
Q 009914          319 -------------------------DDPS--TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  371 (522)
Q Consensus       319 -------------------------~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  371 (522)
                                               ...+  .+.++++..++.|+|....++ ...+++-|.+.+++.....|+..++..
T Consensus       205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t-lGisYiDDnvk~~~SplYlgi~~~~~~  283 (735)
T KOG3626|consen  205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT-LGISYIDDNVKKKNSPLYLGILYSMAI  283 (735)
T ss_pred             cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc-CCCccccccccccCCcHHHHHHHHHHH
Confidence                                     0001  233566777888998888888 899999999999999999999999999


Q ss_pred             HHhchhhHHHHHHHHHhhCc
Q 009914          372 ILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       372 ~~~~i~~~~~g~l~~~~~g~  391 (522)
                      +|-++|-.+++++......+
T Consensus       284 lGPaiGfllgS~~l~lYvD~  303 (735)
T KOG3626|consen  284 LGPAIGFLLGSFCLKLYVDF  303 (735)
T ss_pred             hhhHHHHHHHHHHHHeeecc
Confidence            99999988888888774343

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.02  E-value=0.013  Score=56.09  Aligned_cols=133  Identities=17%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhH----hhhcCCCchhHHHHHHHHHHHHHHHHHHHH----
Q 009914          244 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF----LSARFPNSGRIILAQISSLSAIPLAALLLL----  315 (522)
Q Consensus       244 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  315 (522)
                      .++++.|+++.|.+....+.+.....+.+++.+++.|..+||    +|||||.    +. ..+..+.+.+..+.+.    
T Consensus        52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf----I~-~~s~~i~~~l~Lig~aaDig  126 (498)
T KOG0637|consen   52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF----IL-AGSLLIAVSLFLIGYAADIG  126 (498)
T ss_pred             hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch----HH-HhhHHHHHHHhhhhhHhhhh
Confidence            468999999999999999999999999999999999999996    5677653    22 1122222111111111    


Q ss_pred             -hCCCCCch------hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHH-HHHHHHHHHHHHhchhhHHHH
Q 009914          316 -VLPDDPST------PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTS-VYAMDRSFESILSSFAPPVVG  382 (522)
Q Consensus       316 -~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~~~~~g  382 (522)
                       .+......      ..+.++.+.+.=+....... ..-++..|+..++.+.+ +++....+..+|+.+|-.+++
T Consensus       127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence             11111111      11222233333345545555 67899999987777777 999999888888888766655

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.93  E-value=0.37  Score=47.82  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             ChhHHHHHHHHHHHHHhcc-chhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc-------------
Q 009914          257 SHEKTAFLMALFVIASSLG-GLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS-------------  322 (522)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  322 (522)
                      +.+...++.....+...+. .++.+++++|+++++     +.......... .+........+....             
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~-----lf~~~~~~F~~-~f~lF~~vl~p~~~~~~p~~~~~~~~~~  114 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEA-----LFYTVISPFLG-FFALFAFVIYPLSDLLHPTALADKLLSL  114 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-----hHHHHHHHHHH-HHHHHHHHHhcchhhcCCcHHHHHHHhh
Confidence            3456677776665655555 788999999999984     33322222222 222222222222111             


Q ss_pred             ------------hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          323 ------------TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       323 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                                  ..|...+......+.......-..++++.|.+..++..+.+++....+++|..+++.+..++.+.
T Consensus       115 ~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       115 LPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             cchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        01222223333333222222115789999999999999999999999999999999998887754

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.37  E-value=0.0032  Score=59.19  Aligned_cols=113  Identities=13%  Similarity=0.063  Sum_probs=3.4

Q ss_pred             HHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHh-----CCCCCchhHHHHHHHHHHHHH
Q 009914          263 FLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV-----LPDDPSTPVMHGLVLVVTGLF  337 (522)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~  337 (522)
                      ..+..+.++-.+|+.+.++..-+..+++    .+....+.=+..+++..++-..     .+..-++.+..++..+++|+.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~----~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~T  261 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPR----WLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFT  261 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccc----cHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHc
Confidence            3455788899999998876432211121    1111111111112222222111     001112334467788899999


Q ss_pred             HhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHH
Q 009914          338 ISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  380 (522)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~  380 (522)
                      .|.... ..+.+..+.+++++|..+-.+......+|-.+|..+
T Consensus       262 NGyl~t-l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  262 NGYLST-LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             -----H-HHH---------------------------------
T ss_pred             cchhhh-ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888 888888898888888777666666666665655544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.14  E-value=0.35  Score=46.69  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=81.7

Q ss_pred             HHHHHHHH-H-hCCChhHHHHHHHH-HHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009914          245 SFAAMWLE-L-TGFSHEKTAFLMAL-FVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  321 (522)
Q Consensus       245 ~~~~~~~~-~-~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (522)
                      .++..|+. . .|++..+...-... ..=..+...+....+.|.++-|.     .++......+..  -.++++     .
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp-----viil~~~~~i~t--~~lll~-----~   91 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP-----VIILQALSYIIT--WLLLLF-----G   91 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHH--HHHHHH-----H
Confidence            46666664 3 78888876543333 22344445567778889988873     222222111111  111111     2


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          322 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ......-+.-+..|++.+.-..  .++++-..+|+++.-++.+......-+|..++..++-.+...
T Consensus        92 ~sv~~mq~~q~~yg~~~a~eva--y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAAEVA--YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH--HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444466777888887776444  678888888999999999999988888888888777766664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.98  E-value=0.74  Score=44.16  Aligned_cols=36  Identities=8%  Similarity=0.030  Sum_probs=21.5

Q ss_pred             hHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHH
Q 009914          324 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTS  361 (522)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (522)
                      .+..+....+.+++.+.... ..+...++. |+++...
T Consensus       117 f~vt~~~vv~~~~a~a~~qg-s~~G~a~~~-P~~ytqa  152 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQG-SLYGLAGLF-PSEYTQA  152 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhcc-chhhhhhcC-CHHHHHH
Confidence            34455666677777777776 566665554 5554433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.81  E-value=0.23  Score=35.85  Aligned_cols=49  Identities=14%  Similarity=0.243  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhc
Q 009914          241 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSAR  289 (522)
Q Consensus       241 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  289 (522)
                      +.+...+|...++.++|..+.+++.+...++.++|.+...++.++.+++
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            3445578888899999999999999999999999999999888875544

Note that many members are hypothetical proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=93.75  E-value=3.6  Score=38.37  Aligned_cols=143  Identities=14%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchh-HH---HHHHHHHHHHHHHHH-Hhh----hhHHHHHHHHHHHHH
Q 009914           36 LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRA-HV---IALGAFLWAAATFLV-AFS----STFAQVAISRALNGI  106 (522)
Q Consensus        36 ~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr-~~---l~~~~~~~~~~~~~~-~~~----~~~~~l~~~r~l~G~  106 (522)
                      +|-+.-|.+.+.+.+...+.+++...-++.|.--.- .+   +++|++.-.-..+++ .|+    ++-+.+++..++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            466778899999999999999888887777643322 21   223332221111222 222    466788889999999


Q ss_pred             HhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          107 GLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       107 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      -.|...|..+.++..-.  .+.....+.....-.+|.+.+.++-.++.-.    ..|---.-...|.+.++.++...+
T Consensus       118 LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP----~LGl~rta~laG~~Nl~aAvv~~f  189 (508)
T COG4262         118 LVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLP----RLGLVRTAALAGLCNLAAAVVTLF  189 (508)
T ss_pred             HHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhh----hhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988722  2222233333444666777666665554421    033333333445555555544443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.94  E-value=0.29  Score=47.54  Aligned_cols=65  Identities=23%  Similarity=0.217  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc---hhHHHHHHHHHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ..+.+.++++++|.|..-+ ...++..|.++++   .+.+....+....++|..+++.+.+++-++ .||
T Consensus        34 ~~~~~gL~lia~G~G~~K~-ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~-~~~  101 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKP-NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN-YGW  101 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHH-HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-S-H
T ss_pred             HHHHHHHHHHHhccccccc-cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc-cch
Confidence            4467788889999999999 8899999999765   456677888889999999999999999887 565

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.70  E-value=0.0053  Score=53.70  Aligned_cols=64  Identities=13%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHH---------HHHhchhHH
Q 009914           10 LVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYL---------AIRHNRAHV   73 (522)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l---------~Dr~grr~~   73 (522)
                      ....+.+.+-+..+.+...+-.+.++.|.++.....++.+..+..++..++.|..         .||+|||+.
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            3456677777777777777777778889999888899999999999999998754         578998875

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.64  E-value=2.2  Score=38.33  Aligned_cols=136  Identities=16%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHhchh--HHHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHHHHhhhhHH
Q 009914           43 LGSLTLFRSIVQASCYPIAAYLAIRHNRA--HVIALGAFLWAAATFLVAFS----S---TFAQVAISRALNGIGLALVAP  113 (522)
Q Consensus        43 ~g~~~s~~~~~~~i~~~~~G~l~Dr~grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~~~  113 (522)
                      -|.+.+.++++.++++-+..++..|-..|  ..+.+..++.++...+..+.    |   +...-+++-.+.-.+.|.++|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58999999999999999998888875543  34555555544444333322    2   222224555566667789999


Q ss_pred             HHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCCchHHHHHHHHHHHHHHHhhhh
Q 009914          114 AIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM-TFMGIPGWRISFHIVGLISVVVGTLVRL  184 (522)
Q Consensus       114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~-~~~~~~gw~~~f~~~~~~~~i~~~~~~~  184 (522)
                      ....+-.++.|++.|+..+.++..-.++=..+      .+... ...-..+-|..|-+..+...+..+....
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvCl------vLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~  429 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCL------VLYNLHVDAFPTTTRNMFGICSAFLFVASILQRR  429 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhh------hheecccccCccccchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999888876544332221      12221 0111145677888777766666555443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.33  E-value=3.7  Score=42.11  Aligned_cols=145  Identities=19%  Similarity=0.066  Sum_probs=81.4

Q ss_pred             HHHHHHH-HHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhCCC-
Q 009914          245 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL---AALLLLVLPD-  319 (522)
Q Consensus       245 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-  319 (522)
                      .-+-.|+ .+++.+...+...............+++++++|.+--|...   +.........+...   ........+. 
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t---I~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT---INIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            3344444 46777777777777777777777788999999987555210   11111111111111   1111111110 


Q ss_pred             -----C------Cc--hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcc----hh--HHHHHHHHHHHHHHhchhhHH
Q 009914          320 -----D------PS--TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK----SR--TSVYAMDRSFESILSSFAPPV  380 (522)
Q Consensus       320 -----~------~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~g~~~~~~~~~~~i~~~~  380 (522)
                           .      +.  ....+...+.+..+|.+..-+ ...++-.|.++..    .+  ...+.......++|..++-.+
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~-~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~  213 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP-CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV  213 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC-cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence                 0      01  123455566667778888788 8888888888722    22  245666667777777777777


Q ss_pred             HHHHHHHhhCcccC
Q 009914          381 VGILAQHVYGFKPI  394 (522)
Q Consensus       381 ~g~l~~~~~g~~~~  394 (522)
                      .-++-+. .||...
T Consensus       214 ~vyiq~~-~~w~lg  226 (571)
T KOG1237|consen  214 LVYIQDN-VGWKLG  226 (571)
T ss_pred             HHhhhhc-ccceee
Confidence            6666565 566443

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=90.49  E-value=0.54  Score=45.90  Aligned_cols=14  Identities=7%  Similarity=-0.145  Sum_probs=7.2

Q ss_pred             hccchhhhhhhhHh
Q 009914          273 SLGGLFGGRMGDFL  286 (522)
Q Consensus       273 ~~~~~~~g~l~~~~  286 (522)
                      ++..+..|++..|+
T Consensus         9 i~~ii~~G~~~~~~   22 (385)
T PF03547_consen    9 IFLIILLGYLLGRF   22 (385)
T ss_pred             HHHHHHHHHHHHHh
Confidence            33444555665554

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=89.68  E-value=3.7  Score=39.04  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=40.3

Q ss_pred             hhHHHHHHHhhhccchhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhh-----HhhhcCC
Q 009914          225 PSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGD-----FLSARFP  291 (522)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~-----~~~~~~~  291 (522)
                      +.+..++..........+...-+|.+++..|.|-.+.+.+.....=..  --+++..+.|     |+||||.
T Consensus        31 ~~illLl~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccc
Confidence            344556666667777777777889999876777665555444332111  1345556666     9999964

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=87.49  E-value=12  Score=38.15  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhccchhhhhhhhHhhhcC
Q 009914          263 FLMALFVIASSLGGLFGGRMGDFLSARF  290 (522)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~  290 (522)
                      .....+.+.+.+++..++++...++.++
T Consensus       301 ~~i~~y~~~~~iaGy~S~~~yk~~~g~~  328 (521)
T PF02990_consen  301 AAIILYALTSFIAGYVSARLYKSFGGKK  328 (521)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence            3344455555666666666666666553

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=86.92  E-value=3.1  Score=38.18  Aligned_cols=110  Identities=10%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHhchhHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009914           42 GLGSLTLFRSIVQASCYPIAAYLAIRHNRAHV---IALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSL  118 (522)
Q Consensus        42 ~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  118 (522)
                      |.-|....+.+|..+..--.-..-  ...-+.   +-.-.+++.+......+.++++..++.-+.-|+-.|..++...--
T Consensus       289 qYRwyqvlYQlGVFiSRSS~~~~~--~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~  366 (409)
T KOG3880|consen  289 QYRWYQVLYQLGVFISRSSINLFT--MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN  366 (409)
T ss_pred             cchhhheeeeeeEEEEeccceEEe--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence            466777777766554322111100  001111   222233444555566778999999999999999888888888888


Q ss_pred             HhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914          119 VADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus       119 i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      +.+-.++++|-.+++......++|..++.+++-.+
T Consensus       367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            88888899999999999999999999888877655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.09  E-value=35  Score=33.90  Aligned_cols=43  Identities=16%  Similarity=0.067  Sum_probs=37.2

Q ss_pred             cchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          345 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ..+..+.|.+..++..+.+++.+...+++..++..+..++..+
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4678889999999999999999999999988888888877764

>KOG2568 consensus Predicted membrane protein [Function unknown]

Probab=83.20  E-value=52  Score=32.84  Aligned_cols=10  Identities=30%  Similarity=0.265  Sum_probs=5.1

Q ss_pred             HhCCChhHHH
Q 009914          253 LTGFSHEKTA  262 (522)
Q Consensus       253 ~~g~~~~~~~  262 (522)
                      +.|.++....
T Consensus       261 ~tG~~~~~~~  270 (518)
T KOG2568|consen  261 STGMSPKVYT  270 (518)
T ss_pred             ccCCCchhHH
Confidence            4566554433

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=82.62  E-value=32  Score=30.03  Aligned_cols=32  Identities=9%  Similarity=0.182  Sum_probs=19.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914          125 DSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus       125 ~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++++.+.-.......-++..+|..+++.+...
T Consensus       157 ~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~  188 (209)
T PF06912_consen  157 GKDRALRRALRYLLIILSFFIGAILGALLYRR  188 (209)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555566666777777777777665

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=81.89  E-value=43  Score=30.95  Aligned_cols=73  Identities=27%  Similarity=0.226  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH---hchhHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR---HNRAHVIALGAFLWAAA   84 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr---~grr~~l~~~~~~~~~~   84 (522)
                      .+.+.+++++.-+..+...-.+..+.+..+......++..+......      +.+-.++   ||.||.=+++....++.
T Consensus        27 ~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~------a~r~~~~~~TfGy~R~eiLaa~~nav~  100 (296)
T COG1230          27 ALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKL------ARRPATKRFTFGYKRLEILAAFLNALL  100 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH------hcCCCCCCCCccHhHHHHHHHHHHHHH
Confidence            33444444444444455555666777777776666666555433322      2222332   78888755555444444


Q ss_pred             HH
Q 009914           85 TF   86 (522)
Q Consensus        85 ~~   86 (522)
                      .+
T Consensus       101 Li  102 (296)
T COG1230         101 LI  102 (296)
T ss_pred             HH
Confidence            33

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	522
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	8e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 56/370 (15%), Positives = 118/370 (31%), Gaps = 28/370 (7%)

Query: 36  LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAF----S 91
                  LG      SI       I   ++ R N    +  G  L AA    + F    +
Sbjct: 57  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116

Query: 92  STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSV 151
           S+ A + +   L G    +  P     +        RG          N+G   GG+  +
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG---GGIPPL 173

Query: 152 VMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPH----FPDGGTANSDQVSSKSF 207
           +           W  + ++    +++V         D       P      +D     + 
Sbjct: 174 LFLLGMAW-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232

Query: 208 RSDVKVLIQEA--KSVIKIPSF-QIIVAQGVTGSFPWSALSFAAMWLELT-GFSHEKTAF 263
           +++ ++  ++   + V+       I +A        +  L ++  +L+    F+ +K+++
Sbjct: 233 KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW 292

Query: 264 LMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST 323
              L+  A   G L  G    ++S +     R                +  +    +P+ 
Sbjct: 293 AYFLYEYAGIPGTLLCG----WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348

Query: 324 PVMHGLVLVVTGLFISWNAPATN-NPIFAEIVPEKSRTSVYAMDRSFESIL-SSFAPPVV 381
            +   + ++V G  I    P         E+ P+K+  +       F  +  S  A  +V
Sbjct: 349 DM---ICMIVIGFLI--YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403

Query: 382 GILAQHVYGF 391
           G      +G+
Sbjct: 404 GYTVDF-FGW 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 50/380 (13%), Positives = 106/380 (27%), Gaps = 113/380 (29%)

Query: 198 NSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS------------------F 239
           N +QV +K   S ++  ++  ++++++   + ++  GV GS                   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 240 PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILA 299
                 F   WL L    +     L  L  +   +   +  R  D  S+        I A
Sbjct: 181 D-----FKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSR-SDH-SSNIKLRIHSIQA 232

Query: 300 QISSLSAIPLAALLLLVLPD--DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK 357
           ++  L         LLVL +  +                   WNA       F  +    
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKA----------------WNA-------F-NL---S 265

Query: 358 SRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKA 417
            +  +    +     LS+     +  L  H     P        + +         L K 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTP-----DEVKSL---------LLKY 310

Query: 418 LYTAI---------GIPMALCCFIYSFL---------YSTYPRDRERARMEALIE----S 455
           L               P  L   I   +         +     D+    +E+ +     +
Sbjct: 311 LDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 456 EMQQL--------ESSNLPAAV-----EYSHVQFSESEVLSVKNRTVIEMDYD----YED 498
           E +++         S+++P  +                V  +   +++E           
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 499 GLDLD---DNDEKILLYRQL 515
            + L+     + +  L+R +
Sbjct: 430 SIYLELKVKLENEYALHRSI 449

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 8/177 (4%)

Query: 74  IALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVAD--STDDSNRGVA 131
           +  G  L      ++A     + +  S  L  IG   + P + +LV       D  R   
Sbjct: 88  VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG 147

Query: 132 FGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHF 191
           F       N+G+ +  L              G+ ++F +   I + +G LV  F      
Sbjct: 148 FSIFVFGINLGAFIAPLIVGAAQEAA-----GYHVAFSLAA-IGMFIGLLVYYFGGKKTL 201

Query: 192 PDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAA 248
                  +D ++ +  +  +  +       I I     +V      ++       A 
Sbjct: 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAI 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	522
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.43
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.28
2xut_A	524	Proton/peptide symporter family protein; transport	99.13
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.03

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6.5e-38  Score=312.29  Aligned_cols=371  Identities=15%  Similarity=0.116  Sum_probs=290.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +++.+..++++.+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            456778888889999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009914           84 ATFLVAF----SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM  159 (522)
Q Consensus        84 ~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~  159 (522)
                      +.+++++    +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.   
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  181 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---  181 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            9999999    999999999999999999999999999999999999999999999999999999999999998876   


Q ss_pred             CCCC-chHHHHHHHHHHHHHHHhhhh-ccCCCCCCCCCCCCCcccccchh---hhhhHHHHH--HhhhhhcchhHHHHHH
Q 009914          160 GIPG-WRISFHIVGLISVVVGTLVRL-FANDPHFPDGGTANSDQVSSKSF---RSDVKVLIQ--EAKSVIKIPSFQIIVA  232 (522)
Q Consensus       160 ~~~g-w~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~  232 (522)
                        .| ||++|++.+++.++..++.++ .+++|+....++.++..+.....   ..+.+...+  ..+..+++|.++...+
T Consensus       182 --~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (451)
T 1pw4_A          182 --FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAI  259 (451)
T ss_dssp             --TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred             --hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHH
Confidence              77 999999999888877766655 44444332211111100000000   000000001  1355677888877766


Q ss_pred             Hhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHh--hhcCCCchhHHHHHHHHHHHHH
Q 009914          233 QGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL--SARFPNSGRIILAQISSLSAIP  308 (522)
Q Consensus       233 ~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~  308 (522)
                      ..+.... .+....+.|.|+++ +|++..+.+.+.+...++.+++.++.+++.||+  ++|+     .+... ..+.. .
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----~~~~~-~~~~~-~  332 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----ATGVF-FMTLV-T  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----HHHHH-HHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hHHHH-HHHHH-H
Confidence            5555544 45666789999986 899999999999999999999999999999998  7762     22221 11111 0


Q ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHH-HhchhhHHHHHHHHH
Q 009914          309 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQH  387 (522)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~  387 (522)
                       .....+... ...+.+......++.|++.+...+ ....++.|.+|++.|++++|+.+.+.++ +..++|.+.|.+.+.
T Consensus       333 -~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~  409 (451)
T 1pw4_A          333 -IATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  409 (451)
T ss_dssp             -HHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHh-cccCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             111222222 122444466677778888777776 6778999999999999999999999999 999999999999998


Q ss_pred             hhCc
Q 009914          388 VYGF  391 (522)
Q Consensus       388 ~~g~  391 (522)
                       .||
T Consensus       410 -~g~  412 (451)
T 1pw4_A          410 -FGW  412 (451)
T ss_dssp             -SCS
T ss_pred             -cCc
Confidence             565

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2e-35  Score=293.18  Aligned_cols=357  Identities=13%  Similarity=0.107  Sum_probs=282.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            3 QETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      ++++.+..+++..+..++......+..|.+.+++|.|+.+.|++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34567778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cccc
Q 009914           83 AATFLV---AFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA-PMTF  158 (522)
Q Consensus        83 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~-~~~~  158 (522)
                      ++.+++   +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. ..  
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--  180 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN--  180 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS--
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            999999   888999999999999999999999999999999999999999999999999999999999999988 44  


Q ss_pred             cCCCC-------------------------chHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHH
Q 009914          159 MGIPG-------------------------WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKV  213 (522)
Q Consensus       159 ~~~~g-------------------------w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (522)
                         .+                         ||+.|++.+++.++..++.++.. .|+.+++++++++   +       ++
T Consensus       181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~---~-------~~  246 (438)
T 3o7q_A          181 ---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNHSDAK---Q-------GS  246 (438)
T ss_dssp             ---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCCCCSS---T-------TS
T ss_pred             ---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccccccc---c-------cc
Confidence               33                         99999888877776666554432 2222211111111   1       11


Q ss_pred             HHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHH-HHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcC
Q 009914          214 LIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMW-LEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  290 (522)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  290 (522)
                      ..+..++.+++|.++...+..+.... .+....+.|.| +++ +|++..+++.+.+...++.+++.++.+++.||+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            22345567788888877666555554 34566789999 876 5999999999999999999999999999999999883


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHH
Q 009914          291 PNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE  370 (522)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  370 (522)
                           .+.... .+..+.  .+.+..   .+. .+ .....++.|++.+...+ ...++..|..|++ ++++.++.. ..
T Consensus       327 -----~~~~~~-~~~~~~--~~~~~~---~~~-~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~  390 (438)
T 3o7q_A          327 -----VLAAYA-LIAMAL--CLISAF---AGG-HV-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MT  390 (438)
T ss_dssp             -----HHHHHH-HHHHHH--HHHHHH---CCH-HH-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred             -----HHHHHH-HHHHHH--HHHHHH---cCC-cH-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HH
Confidence                 332222 111111  111111   122 22 33445777888887777 7888888999866 888888877 67


Q ss_pred             HHHhchhhHHHHHHHHHhhC-cc
Q 009914          371 SILSSFAPPVVGILAQHVYG-FK  392 (522)
Q Consensus       371 ~~~~~i~~~~~g~l~~~~~g-~~  392 (522)
                      .+++.++|.+.|++.|. .| +.
T Consensus       391 ~~g~~~~~~~~g~l~~~-~g~~~  412 (438)
T 3o7q_A          391 IIGGGIVTPVMGFVSDA-AGNIP  412 (438)
T ss_dssp             THHHHHHHHHHHHHHHH-HTSSG
T ss_pred             HHHHHHHHHHHHHHHHH-hcchH
Confidence            79999999999999999 45 64

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.1e-34  Score=287.30  Aligned_cols=371  Identities=14%  Similarity=0.152  Sum_probs=262.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHhcCC--------ChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVGAALHT--------DPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFL   80 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~   80 (522)
                      +..+++.++.+++..+++..+|.+.++++.        +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l   94 (491)
T 4gc0_A           15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344667788899999999999999888743        345688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH------------------hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 009914           81 WAAATFLVA------------------FSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIG  142 (522)
Q Consensus        81 ~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg  142 (522)
                      +.++.++++                  +++|++.++++|+++|++.|...+....+++|+.|+++|++..++.+.+..+|
T Consensus        95 ~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           95 FFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            999999998                  47899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcccc---cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccch----------hhh
Q 009914          143 SLVGGLFSVVMAPMTF---MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKS----------FRS  209 (522)
Q Consensus       143 ~~~g~~l~~~l~~~~~---~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  209 (522)
                      .++++.++..+.....   ....+||+.+.+..+..++..+..++.||+|++...+.+.++..+...          ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~  254 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ  254 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence            9999998887654321   123568999988888888888888888888876544433222111000          000


Q ss_pred             hhHHHHH----H--hhhhhcchhHHHHHHHhh-hccc-hhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhh
Q 009914          210 DVKVLIQ----E--AKSVIKIPSFQIIVAQGV-TGSF-PWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGR  281 (522)
Q Consensus       210 ~~~~~~~----~--~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  281 (522)
                      +.++...    .  ....++.+.......... .... .+....+.|.+.+..+.+...........++..+++.++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (491)
T 4gc0_A          255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM  334 (491)
T ss_dssp             HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence            0000000    0  011222333333222222 2222 344455677777788888888888888888999999999999


Q ss_pred             hhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHH
Q 009914          282 MGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTS  361 (522)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (522)
                      +.||+|||+     .++... ....+....+...................+..++..+ ..+ ..+.+.+|.+|++.|++
T Consensus       335 l~dr~Grr~-----~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~E~fPt~~R~~  406 (491)
T 4gc0_A          335 TVDKFGRKP-----LQIIGA-LGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGP-VCWVLLSEIFPNAIRGK  406 (491)
T ss_dssp             HHHHHCSHH-----HHHHHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTH-HHHHHHHHSSCTTTHHH
T ss_pred             HHHhhcCcc-----hhccch-HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHH-HHHHHHHHhCCHhHHHH
Confidence            999999994     332222 2222222222222222222222222222222233322 233 57789999999999999


Q ss_pred             HHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          362 VYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       362 ~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.|+.+.++++++.+++.+.+.+.+.
T Consensus       407 ~~g~~~~~~~~~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          407 ALAIAVAAQWLANYFVSWTFPMMDKN  432 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888777554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=2.4e-34  Score=279.16  Aligned_cols=348  Identities=14%  Similarity=0.119  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFL   87 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   87 (522)
                      +..+++..+...+......+.+|.+.+++|.|+.+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            35567788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCchHH
Q 009914           88 VAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRIS  167 (522)
Q Consensus        88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~  167 (522)
                      ++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++++.+.     .+||+.
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~  156 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC  156 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999887     799999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHH
Q 009914          168 FHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSF  246 (522)
Q Consensus       168 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  246 (522)
                      |++.+++.++..+...+..++++..+++++  +   .   .       +..++.+++|.++......+.... .+....+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (375)
T 2gfp_A          157 YLFLLVLCAGVTFSMARWMPETRPVDAPRT--R---L---L-------TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEAC  221 (375)
T ss_dssp             HHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--C---T---T-------TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCcccCCCCcccc--c---H---H-------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999988887777655443333222211110  0   0   0       112234455666555444444333 3455567


Q ss_pred             HHHHHHH-hCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHH-HHHHHHHHHHHHHhCCCCCchh
Q 009914          247 AAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS-SLSAIPLAALLLLVLPDDPSTP  324 (522)
Q Consensus       247 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  324 (522)
                      .|.|+++ +|.++.+.+.+.....++.+++.++.+++.||++++      ....... ...+.........    ...+.
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~  291 (375)
T 2gfp_A          222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL------MWQSVICCLLAGLLMWIPDWF----GVMNV  291 (375)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH------HHHHHHHHHHTSSSSSHHHHH----HHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhh----ccccH
Confidence            8888875 899999999999999999999999999999998874      2221111 1111100000000    01233


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          325 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +......++.|++.+...+ ...++..|..| ++|+++.|+.+...+++..++|.+.|.+.+.
T Consensus       292 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          292 WTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455667788888888888 88999999998 8999999999999999999999999999876

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=4.1e-32  Score=273.38  Aligned_cols=376  Identities=12%  Similarity=0.091  Sum_probs=260.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHh-----cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHH-hchhHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPG-VYKEVGAA-----LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIR-HNRAHVIAL   76 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~grr~~l~~   76 (522)
                      +++.++.+.+..+...+....... ..+++.++     +|.+..+.|++.+++.++..++++++|+++|| +|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            345566666677776666655544 44455555     99999999999999999999999999999999 899999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009914           77 GAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSN--RGVAFGWLQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lg~~~g~~l~~~l~  154 (522)
                      +.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++  |+.++++.+.+.++|.+++|.+++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A           91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988  777888899999999999999999999


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhH----------------------
Q 009914          155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK----------------------  212 (522)
Q Consensus       155 ~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  212 (522)
                      +.     .|||++|++.++..++..++.++..++...++.+..+++ ..+++..+..+                      
T Consensus       171 ~~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~  244 (491)
T 4aps_A          171 EA-----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP-LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN  244 (491)
T ss_dssp             HH-----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC-CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC
T ss_pred             hh-----hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            87     899999999888777666655544322111111110000 00000000000                      


Q ss_pred             --------------------------HHHHHhhhhhcchhHHHHHHHhhhccc-hhHHHHHHHHHHHH-hCCChhHHHHH
Q 009914          213 --------------------------VLIQEAKSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWLEL-TGFSHEKTAFL  264 (522)
Q Consensus       213 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~~~~~~  264 (522)
                                                +.....+...+....+........... ......++|.|.++ .+.+....+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4aps_A          245 SLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWF  324 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGG
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHH
Confidence                                      000000011111112222222222222 23344567888875 67765677788


Q ss_pred             HHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH--hCC-CCCchhHHHHHHHHHHHHHHhcc
Q 009914          265 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL--VLP-DDPSTPVMHGLVLVVTGLFISWN  341 (522)
Q Consensus       265 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~~~~~~  341 (522)
                      .....++.+++.++.+++.||++||+....+.+.... .+..+....+...  ... ......+......++.|++.+..
T Consensus       325 ~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  403 (491)
T 4aps_A          325 QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL-MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI  403 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH-HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred             hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999988643211111111 1111111111111  000 11223444667778889988888


Q ss_pred             CCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          342 APATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      .+ ..+.++.|.+|++.|+++.|+.+....++..++|.+.+.+.+.
T Consensus       404 ~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          404 SP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             TT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             hH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88 7899999999999999999999999999999999998887654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=2.1e-29  Score=247.55  Aligned_cols=359  Identities=9%  Similarity=0.040  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAA   84 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   84 (522)
                      +.+..+....+..........+.+|. +.+++|.|+.+.|++.+++.++..++++++|+++||+|||++++++..+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34445555555555555565666666 45669999999999999999999999999999999999999999888776553


Q ss_pred             HHH---HHhhhhHH-HHHHHHHHHHHHhhhhHHHHHHHHhhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009914           85 TFL---VAFSSTFA-QVAISRALNGIGLALVAPAIQSLVADSTDD--SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        85 ~~~---~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~  158 (522)
                      ...   ..+.+... .++..+++.|++.+...+.....+.++.++  ++++..++.......+|..++|.+++++.+   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---  163 (417)
T 2cfq_A           87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---  163 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            221   12222211 133445555544444443333334444332  345677788888889999999999999876   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhhcc
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS  238 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (522)
                         .+|+..|++.++..++..+..++.++++++..++++.++.+.++.       ..++.++.+++|.++......+...
T Consensus       164 ---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  233 (417)
T 2cfq_A          164 ---INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAF-------SLKLALELFRQPKLWFLSLYVIGVS  233 (417)
T ss_dssp             ---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCC-------CHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccc-------cHHHHHHHhcCCchhhHHHHHHHHH
Confidence               479999998777655544444444444322111110000011110       1123345667777766554433322


Q ss_pred             ch-hHHHHHHHHHHHH-hC---CChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 009914          239 FP-WSALSFAAMWLEL-TG---FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  313 (522)
Q Consensus       239 ~~-~~~~~~~~~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (522)
                      .. +....+.|.|+.+ ++   .+....+...++..++.+++.++.++++||+++|+     .+... ..+.++  . ..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~l~~~-~~~~~~--~-~~  304 (417)
T 2cfq_A          234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALLLA-GTIMSV--R-II  304 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHH-HHHHHH--H-HH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----HHHHH-HHHHHH--H-HH
Confidence            22 2334567888765 33   22345677777888888899999999999999883     22221 111111  1 11


Q ss_pred             HHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHH-HHHHHHHhchhhHHHHHHHHHhhCc
Q 009914          314 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD-RSFESILSSFAPPVVGILAQHVYGF  391 (522)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~~~~g~l~~~~~g~  391 (522)
                      ..  ...++ .+.+.+..++.+++.+...+ ....+..|..|++.|+++.++. +....+++.++|.+.|++.+. .|+
T Consensus       305 ~~--~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~  378 (417)
T 2cfq_A          305 GS--SFATS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGF  378 (417)
T ss_dssp             HH--TTCCS-HHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHH
T ss_pred             HH--HHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCc
Confidence            11  11222 23344444455555554444 4678999999999999999994 888889999999999999987 443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=2e-27  Score=241.14  Aligned_cols=370  Identities=11%  Similarity=0.009  Sum_probs=232.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHH-HHHHhcC------CChhhhHHHHHHHHHHHHhhhhhHHHHHHHh-chhHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYK-EVGAALH------TDPTGLGSLTLFRSIVQASCYPIAAYLAIRH-NRAHVIALGA   78 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g------~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-grr~~l~~~~   78 (522)
                      .+..+.+..++..+......+.++ ++.+++|      .++.+.|++.+++.++..++.+++|+++||+ |||+++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~   92 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS   92 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            344555666666666555444444 5677899      9999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 009914           79 FLWAAATFLVAFSS-TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGW---LQLTSNIGSLVGGLFSVVMA  154 (522)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~lg~~~g~~l~~~l~  154 (522)
                      ++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   .+...++|.+++|.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A           93 LIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998 999999999999999999999999999999999999776665   99999999999999999998


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC-Ccc--------cccchhhhh---hHH---------
Q 009914          155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN-SDQ--------VSSKSFRSD---VKV---------  213 (522)
Q Consensus       155 ~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~---~~~---------  213 (522)
                      +.     .+||++|++.+++.++..++.++..++.+..+++.+. .+.        ++.....+.   ...         
T Consensus       173 ~~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (524)
T 2xut_A          173 KN-----FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAY  247 (524)
T ss_dssp             HT-----SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cc-----ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhh
Confidence            77     7999999998888776665554433221111110000 000        000000000   000         


Q ss_pred             ----------------------HHH---Hh---h---------hhhcchhHHHHHHHhhhccch---h-HHHHHHHHHHH
Q 009914          214 ----------------------LIQ---EA---K---------SVIKIPSFQIIVAQGVTGSFP---W-SALSFAAMWLE  252 (522)
Q Consensus       214 ----------------------~~~---~~---~---------~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~  252 (522)
                                            ..+   .+   .         ...+.+...............   + .....++.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (524)
T 2xut_A          248 ALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN  327 (524)
T ss_dssp             TGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH
Confidence                                  000   00   0         001112222111111111111   1 11123334433


Q ss_pred             HhCCCh-hHHHHHHHHHHHHHhccchhhhhhh----hHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CC
Q 009914          253 LTGFSH-EKTAFLMALFVIASSLGGLFGGRMG----DFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD------DP  321 (522)
Q Consensus       253 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  321 (522)
                      ..+.+. ...+.+.....++.+++..+.+++.    +|.+++...   ......+..+. . ..........      ..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~  402 (524)
T 2xut_A          328 DMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAGIAIT-G-LSWIVVGTIQLMMDGGSA  402 (524)
T ss_dssp             HSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTHHHHH-H-HHHHTTTTTTTTTTTTCC
T ss_pred             hcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHHHHHH-H-HHHHHHHHHHHHhcCCCC
Confidence            443322 1345555554455555555555553    333322111   11111111111 1 1111111110      11


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          322 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      ...+......++.|++.+...+ ...+++.|..|++.||+++|+.+...++++.++|.+.|.+.+.
T Consensus       403 ~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          403 LSIFWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2334455677888888887777 7889999999999999999999999999999999999988764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=8.2e-14  Score=138.02  Aligned_cols=176  Identities=11%  Similarity=0.010  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHh-cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHh--chhHHHHHHHHHHH
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRH--NRAHVIALGAFLWA   82 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--grr~~l~~~~~~~~   82 (522)
                      +.++.+.+..++............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+  |||+.+.++..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            445566666666666666777777877766 899999999999999999999999999999999  99999888777766


Q ss_pred             -HHHHHHHhh--hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q 009914           83 -AATFLVAFS--STFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNI-GSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        83 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-g~~~g~~l~~~l~~~~~  158 (522)
                       ++.+++.+.  .+.+.+.+..++.|++.+...+...+++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.  
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~--  409 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--  409 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence             666666665  36778888889999998999999999999999999999999999999999 999999999999987  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                         .||+..|++.+++.++..++.++..
T Consensus       410 ---~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          410 ---FGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence               7999999999888887777666543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.47  E-value=1.2e-12  Score=128.05  Aligned_cols=144  Identities=10%  Similarity=0.146  Sum_probs=123.3

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009914           40 PTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAIQSLV  119 (522)
Q Consensus        40 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  119 (522)
                      ....|++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888888899999999999999999999998888888877777778888888888888888777777788999


Q ss_pred             hhccCCCchhHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCC
Q 009914          120 ADSTDDSNRGVAFGW-LQLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAND  188 (522)
Q Consensus       120 ~~~~~~~~r~~~~~~-~~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  188 (522)
                      .|.+|++.|+++.++ .+....+|..++|.+++++.+.     .|++..|.+.+++.++..++.++..++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999999998 4888889999999999999887     789999999888888777766654443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.43  E-value=6.9e-12  Score=123.60  Aligned_cols=166  Identities=13%  Similarity=-0.005  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH-HH-hcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHH
Q 009914            8 LVLVNLAGIMERADESLLPGVYKEV-GA-ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT   85 (522)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   85 (522)
                      +....+..++............|.+ .+ .+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  339 (438)
T 3o7q_A          260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            4444455555555555555555655 54 459999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC-c
Q 009914           86 FLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFMGIPG-W  164 (522)
Q Consensus        86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~~~~g-w  164 (522)
                      ++..+.++.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+.     .| +
T Consensus       340 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~  411 (438)
T 3o7q_A          340 LISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNI  411 (438)
T ss_dssp             HHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSS
T ss_pred             HHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcch
Confidence            888888877655444 8889999999999999999999866 888888777 5679999999999999987     67 9


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 009914          165 RISFHIVGLISVVVGTL  181 (522)
Q Consensus       165 ~~~f~~~~~~~~i~~~~  181 (522)
                      +..|++.++..++..++
T Consensus       412 ~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          412 PTAELIPALCFAVIFIF  428 (438)
T ss_dssp             GGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998876655544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=1e-11  Score=124.41  Aligned_cols=174  Identities=16%  Similarity=0.155  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHH-HhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHH-----HHHHHHH
Q 009914            9 VLVNLAGIMERADESLLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIA-----LGAFLWA   82 (522)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~-----~~~~~~~   82 (522)
                      ..+.+..+............+|.+. +.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~  365 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG  365 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            3344444444444555555556554 446777678888899999999999999999999999986544     7777777


Q ss_pred             HHHHHHHhhh---------hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009914           83 AATFLVAFSS---------TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVM  153 (522)
Q Consensus        83 ~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l  153 (522)
                      ++.++..+..         +.+.+.+..++.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~  445 (491)
T 4aps_A          366 LSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY  445 (491)
T ss_dssp             HHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666643         6677888889999999999999999999999999999999999999999999999998888


Q ss_pred             hcccccCCCCchHHHHHHHHHHHHHHHhhhhccCC
Q 009914          154 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFAND  188 (522)
Q Consensus       154 ~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  188 (522)
                      .+      .++...|.+.+++.++..++.+++.++
T Consensus       446 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          446 NA------KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             GG------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             hc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75      477788888888888777776665443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.28  E-value=1.9e-10  Score=115.14  Aligned_cols=184  Identities=13%  Similarity=0.053  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHH
Q 009914            7 TLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATF   86 (522)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   86 (522)
                      .........+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHH
Confidence            33444444444444555666677888888998888888888888889999999999999999999999998888887776


Q ss_pred             HHHhhh----hHHHHHHHHHH-HHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccC
Q 009914           87 LVAFSS----TFAQVAISRAL-NGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMT-FMG  160 (522)
Q Consensus        87 ~~~~~~----~~~~l~~~r~l-~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~-~~~  160 (522)
                      ..+...    +.+..++..++ .+.......+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ...
T Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~  437 (491)
T 4gc0_A          358 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA  437 (491)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655431    11222222222 222223344667789999999999999999999999999999888776654321 001


Q ss_pred             CCCchHHHHHHHHHHHHHHHhhhhccCCCC
Q 009914          161 IPGWRISFHIVGLISVVVGTLVRLFANDPH  190 (522)
Q Consensus       161 ~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  190 (522)
                      ..++...|++.++++++..++.+++.+|.+
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            146677889999988888888877655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.13  E-value=3.7e-10  Score=114.01  Aligned_cols=145  Identities=13%  Similarity=0.035  Sum_probs=107.2

Q ss_pred             hhhccchhHHHHHHHHHHH-HhC------CChhHHHHHHHHHHHHHhccchhhhhhhhHh-hhcCCCchhHHHHHHHHHH
Q 009914          234 GVTGSFPWSALSFAAMWLE-LTG------FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLS  305 (522)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~  305 (522)
                      .+.....+....+++.|++ ++|      ++..+.+++.+...++.+++.++.|+++||+ |+|+     .+.... .+.
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----~~~~~~-~~~   95 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----TILWLS-LIY   95 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----HHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHH-HHH
Confidence            3333334566678888886 588      9999999999999999999999999999999 9883     332221 111


Q ss_pred             HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHH---HHHHHHHHhchhhHHHH
Q 009914          306 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM---DRSFESILSSFAPPVVG  382 (522)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~i~~~~~g  382 (522)
                      .+  ..+....   ...+.+.+.+..++.|++.+...+ ...+++.|.+|+++|++..+.   .+...++|..++|.+.|
T Consensus        96 ~~--~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           96 CV--GHAFLAI---FEHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HH--HHHHHHH---TSSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HH--HHHHHHH---hcccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1111111   121344566777888999988888 889999999999999776665   88889999999999999


Q ss_pred             HHHHHhhCc
Q 009914          383 ILAQHVYGF  391 (522)
Q Consensus       383 ~l~~~~~g~  391 (522)
                      .+.+. .||
T Consensus       170 ~l~~~-~g~  177 (524)
T 2xut_A          170 LLLKN-FGA  177 (524)
T ss_dssp             HHHHT-SCH
T ss_pred             HHhcc-ccH
Confidence            99886 555

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.03  E-value=3.3e-10  Score=109.05  Aligned_cols=132  Identities=11%  Similarity=0.051  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 009914          243 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  322 (522)
Q Consensus       243 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (522)
                      ....+|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+..    ...........  .....      .+
T Consensus        19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~~~~~~~--~~~~~------~~   86 (375)
T 2gfp_A           19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----LVGMSIFMLAT--LVAVT------TS   86 (375)
T ss_dssp             HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----HHHHHHHHHHH--HHHHH------HH
T ss_pred             HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----HHHHHHHHHHH--HHHHH------hc
Confidence            33456777778999999999999999999999999999999999998643    11111111111  11111      13


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 009914          323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  387 (522)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~  387 (522)
                      +.+.+.+..++.|++.+...+ ...+++.|..|+++|++++++.+....++..++|.+++++.+.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             cHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            445566778888999888888 7889999999999999999999999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	522
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-16
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.002
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 46/372 (12%), Positives = 98/372 (26%), Gaps = 8/372 (2%)

Query: 27  GVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAAT- 85
            +              LG      SI       I   ++ R N    +  G  L AA   
Sbjct: 45  ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104

Query: 86  ---FLVAFSSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIG 142
              F+   +S+ A + +   L G    +  P     +        RG          N+G
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164

Query: 143 SLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQV 202
             +  L  ++             +      L+++    ++R        P      +D  
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP 224

Query: 203 SSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTA 262
              + +++ ++    AK +         +   +  +  +  L    +      +  E   
Sbjct: 225 DDYNEKAEQEL---TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 281

Query: 263 FLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS 322
           F +     A  L    G               R             +    ++   +   
Sbjct: 282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 341

Query: 323 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG 382
            P +  + ++V G  I             E+ P+K+  +       F  +  S A   + 
Sbjct: 342 NPTVDMICMIVIGFLIYGPVMLIG-LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 400

Query: 383 ILAQHVYGFKPI 394
                 +G+   
Sbjct: 401 GYTVDFFGWDGG 412

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 55  ASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPA 114
              +              V  +     A   + +  +       I   + G  +      
Sbjct: 304 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVML 363

Query: 115 IQSLVADSTDDSNRGVAFGWLQLTSNI-GSLVGGLFSVVMAPMTFMGIPGWRISFHIVGL 173
           I     +       G A G+  L   + GS+                  GW   F ++  
Sbjct: 364 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDGGFMVMIG 418

Query: 174 ISVVVGTLVRLF 185
            S++   L+ + 
Sbjct: 419 GSILAVILLIVV 430

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 25/355 (7%), Positives = 91/355 (25%), Gaps = 16/355 (4%)

Query: 35  ALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTF 94
             H   +  G +    S+      P+   L+ +      +                    
Sbjct: 37  INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96

Query: 95  AQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMA 154
             +  +  +  I   +      +  A + +     V+                 +++  +
Sbjct: 97  PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156

Query: 155 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVL 214
            +  M     +  F +    ++++  L+         P   T  +   ++ S  S    L
Sbjct: 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAK--TDAPSSATVANAVGANHSAFSLKLAL 214

Query: 215 IQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSL 274
               +  +   S  +I        F     +F   +            ++  +  + ++ 
Sbjct: 215 ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNAS 274

Query: 275 GGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVT 334
              F   + + +  +        +              + ++     ++ +   ++  + 
Sbjct: 275 IMFFAPLIINRIGGKNALLLAGTIM------------SVRIIGSSFATSALEVVILKTLH 322

Query: 335 GLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF-APPVVGILAQHV 388
              + +                +   ++Y +   F   L+      + G + + +
Sbjct: 323 MFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	522
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-37  Score=304.01  Aligned_cols=374  Identities=14%  Similarity=0.115  Sum_probs=285.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA   83 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   83 (522)
                      +|..+..++++++..+++...++...|.+. ++|+|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            567777888888888888888998888775 5899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh----hHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009914           84 ATFLVAFSS----TFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNIGSLVGGLFSVVMAPMTFM  159 (522)
Q Consensus        84 ~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~~~~  159 (522)
                      +.+++++++    +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+....  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--  179 (447)
T d1pw4a_         102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--  179 (447)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--
T ss_pred             HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--
Confidence            999888764    67889999999999999999999999999999999999999999999999999999988876542  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc------chhhhhhHHHHHHhhhhhcchhHHHHHHH
Q 009914          160 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSS------KSFRSDVKVLIQEAKSVIKIPSFQIIVAQ  233 (522)
Q Consensus       160 ~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (522)
                        .+||+.|++.+++.++..++.++++++++........++.+.+      +...++........+..++++.++.....
T Consensus       180 --~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (447)
T d1pw4a_         180 --NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  257 (447)
T ss_dssp             --CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             --hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHH
Confidence              5899999999998888888877766654433222211111100      00000001111233456777777766555


Q ss_pred             hhhccc-hhHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          234 GVTGSF-PWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       234 ~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      .++... .+....+.|.|++ ..+++..+.+.......+..+++.++.|++.||+++++     ......... ......
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~-~~~~~~  331 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-----RGATGVFFM-TLVTIA  331 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----HHHHHHHHH-HHHHHH
T ss_pred             hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc-----cccccchhH-HHHHHH
Confidence            444444 4566778898886 48999999999999999999999999999999998874     111111111 111122


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHHHHHHHHh-chhhHHHHHHHHHhhC
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQHVYG  390 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~i~~~~~g~l~~~~~g  390 (522)
                      .. ........+.+...++.++.|++.+...+ ....+..|.+|++.|+++.|+.+.+.++++ .++|.+.|++.|. .|
T Consensus       332 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-~g  408 (447)
T d1pw4a_         332 TI-VYWMNPAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FG  408 (447)
T ss_dssp             HH-HTTSCCTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SC
T ss_pred             HH-HHHhcccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence            22 22222234445566677777887777666 678899999999999999999999988755 5678899999998 66


Q ss_pred             c
Q 009914          391 F  391 (522)
Q Consensus       391 ~  391 (522)
                      +
T Consensus       409 ~  409 (447)
T d1pw4a_         409 W  409 (447)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.2e-28  Score=237.39  Aligned_cols=361  Identities=9%  Similarity=0.019  Sum_probs=237.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHH
Q 009914            4 ETVTLVLVNLAGIMERADESLLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWA   82 (522)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   82 (522)
                      |.+.++.+.+.+++..+......+.+|. +.+++|.|++++|++.+++.++..++++++|+++||+|||++++++..+..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            4566777788888888888888888886 567799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHH----HHHHHHHHHHhhhhHHHHHHHHhhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009914           83 AATFLVAFSSTFAQV----AISRALNGIGLALVAPAIQSLVADSTDD--SNRGVAFGWLQLTSNIGSLVGGLFSVVMAPM  156 (522)
Q Consensus        83 ~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lg~~~g~~l~~~l~~~  156 (522)
                      ++.++..+..+....    ++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  164 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI  164 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence            888888887665544    4445555554454444444444443332  3455677888888999999999999999874


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccchhhhhhHHHHHHhhhhhcchhHHHHHHHhhh
Q 009914          157 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT  236 (522)
Q Consensus       157 ~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (522)
                            +|+..+........+..++..+..++++....+.++++...+....       ...+...+++..+........
T Consensus       165 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  231 (417)
T d1pv7a_         165 ------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL-------KLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCH-------HHHHHHTTSSHHHHHHHHHHH
T ss_pred             ------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccc-------cccccccccccccchhhhhHH
Confidence                  6666666666666666655555443332222221111111111111       111122233333332222222


Q ss_pred             ccch-hHHHHHHHHHHH----HhCCChhHHHHHHHHHHHHHhccchhhhhhhhHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 009914          237 GSFP-WSALSFAAMWLE----LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  311 (522)
Q Consensus       237 ~~~~-~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (522)
                      .... .......+.+..    +.+.+....+.......++..++..+.+++.||.++++     .+... ..+..+  . 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----~~~~~-~~~~~~--~-  302 (417)
T d1pv7a_         232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALLLA-GTIMSV--R-  302 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-----HHHHH-HHHHHH--H-
T ss_pred             HHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc-----chhhh-HHHHHH--h-
Confidence            2221 122222223322    23344566777788888899999999999999999883     22221 111111  1 


Q ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHHhccCCCcchhhhhhhcCcchhHHHHHHHH-HHHHHHhchhhHHHHHHHHHhhC
Q 009914          312 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR-SFESILSSFAPPVVGILAQHVYG  390 (522)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~~g  390 (522)
                      .....  . .++.+...+..++.|++.+...+ ...+++.|.+|++.|+++.|+.. ....++..++|.+.|++.|. .|
T Consensus       303 ~~~~~--~-~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-~g  377 (417)
T d1pv7a_         303 IIGSS--F-ATSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IG  377 (417)
T ss_dssp             HHHHH--T-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HC
T ss_pred             hhccc--c-ccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC
Confidence            11111  1 23344466777788888888777 78999999999999999999865 55678999999999999998 56


Q ss_pred             c
Q 009914          391 F  391 (522)
Q Consensus       391 ~  391 (522)
                      +
T Consensus       378 ~  378 (417)
T d1pv7a_         378 F  378 (417)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.1e-13  Score=130.50  Aligned_cols=150  Identities=11%  Similarity=0.138  Sum_probs=135.0

Q ss_pred             cCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHHHH
Q 009914           36 LHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAAATFLVAFSSTFAQVAISRALNGIGLALVAPAI  115 (522)
Q Consensus        36 ~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  115 (522)
                      .+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            34456677888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhhcccccCCCCchHHHHHHHHHHHHHHHhhhhccCCCC
Q 009914          116 QSLVADSTDDSNRGVAFGWL-QLTSNIGSLVGGLFSVVMAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPH  190 (522)
Q Consensus       116 ~~~i~~~~~~~~r~~~~~~~-~~~~~lg~~~g~~l~~~l~~~~~~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  190 (522)
                      .+++.|.+|+++|++..++. +....+|..++|.+++++.+.     .||+..|++.+++.++..++..+..++++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999985 466789999999999999988     89999999999998888888777765543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.1e-11  Score=117.93  Aligned_cols=176  Identities=13%  Similarity=0.056  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHH-HHHHhcCCChhhhHHHHHHHHHHHHhhhhhHHHHHHHhchhHHHHHHHHHHHH-
Q 009914            6 VTLVLVNLAGIMERADESLLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLAIRHNRAHVIALGAFLWAA-   83 (522)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~-   83 (522)
                      +.+..+....++............| .+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+ 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  328 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence            3444444444444444444444444 45567899999999999999999999999999999999976543333332222 


Q ss_pred             --HHHHHHh--hhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhccCCCchhHHHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q 009914           84 --ATFLVAF--SSTFAQVAISRALNGIGLALVAPAIQSLVADSTDDSNRGVAFGWLQLTSNI-GSLVGGLFSVVMAPMTF  158 (522)
Q Consensus        84 --~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-g~~~g~~l~~~l~~~~~  158 (522)
                        +.++...  ..+.+..++..++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+++.+.  
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~--  406 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--  406 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence              2222222  346777788888889998888889999999999999999999999887776 567889999999988  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhcc
Q 009914          159 MGIPGWRISFHIVGLISVVVGTLVRLFA  186 (522)
Q Consensus       159 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~  186 (522)
                         .||+..|++.++..++..++...+.
T Consensus       407 ---~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         407 ---FGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hChHHHHHHHHHHHHHHHHHHHHHH
Confidence               8999999988887777766665543