Citrus Sinensis ID: 009915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
ccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEcccEEEccccccccccccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEccccccccEEEEcccHHHHHHHHHHccccccccccccEEEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHc
cccHHHccccccccHHHHHHHHHHHHcccccccccccEccccEEEEEEEccEEEccccccccccccEEEEEEccccEEEEEEccccccccccccccccccEEEccccHHHcEEEEEcccccccEEEEEEEccccccccEEEccccHHHHHHHHHHHHHHccccccccEEEEcccccHHHHccEEEccccccccccccccHHHHcccccccccHccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccHHcccccccccccHHHHHcccHHHEEcccccccccHHHccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHc
mqemelhdlsddaDYAASMqqgsssmmrsdsskrssssesegaelvylkdnvtihptqfASERISGRLKLIKQGSSLFMTWipykgqnsntrlsekdrnlytiravpftevrsirrhtpaFGWQYIIVVLSsglafpplyfytgGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvefdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKVSLFIF
MQEMELHDLSDDADYAASMQqgsssmmrsdsskrssSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIpykgqnsntrlsekdrnlytiravpftevrsirrHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAvsiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWgkprqpplgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLfalskvslfif
MQEMELHDLSDDADYAAsmqqgsssmmrsdsskrssssesegAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
********************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQN*******KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTL*************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE*******ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPR***LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI*
****ELH***DD********************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWI***********************VPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIK**************FL*******************************************************************************************************************************TETIV*****************************EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
*********SDDADYAA*************************AELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
*********SDDADYAASMQQG*SSMM*SDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKG**********DRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTP****D**TN***************************AQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
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MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q8TC07 691 TBC1 domain family member yes no 0.714 0.539 0.335 5e-57
Q9HA65 648 TBC1 domain family member no no 0.643 0.518 0.343 1e-53
Q9CXF4 671 TBC1 domain family member yes no 0.369 0.287 0.487 4e-53
Q8BYH7 645 TBC1 domain family member no no 0.350 0.283 0.486 9e-47
Q8TBP0 767 TBC1 domain family member no no 0.314 0.213 0.512 6e-42
Q9UUH7 743 GTPase-activating protein yes no 0.881 0.619 0.275 2e-41
P09379 730 GTPase-activating protein yes no 0.871 0.623 0.264 3e-39
Q6BU76 757 GTPase-activating protein yes no 0.883 0.608 0.247 2e-36
Q6FWI1 745 GTPase-activating protein yes no 0.369 0.259 0.356 6e-34
A1A5B6 742 TBC1 domain family member no no 0.363 0.256 0.402 4e-33
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 211/411 (51%), Gaps = 38/411 (9%)

Query: 108 FTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDAN 167
            T+++SI+++    GW Y++  L   +  P L+F+ G  +          LL+ S+E   
Sbjct: 132 LTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSK----------LLIESLEKYV 181

Query: 168 VFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSIS 227
           V   +  D R         L       S S +  ++ D P    ++    GL      + 
Sbjct: 182 VLCESPQDKR--------TLLVNCQNKSLSQSFENLLDEPAYGLIQ---AGLLDRRKLLW 230

Query: 228 QFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF-DSQS 286
             H  +K K +DP     I     FS VT +  ++        H            D+  
Sbjct: 231 AIHHWKKIK-KDPYTATMI----GFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIP 285

Query: 287 ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMD 346
            L  + +     E ++  I +   PV            R+ P+  EEWT  +D+EGR+++
Sbjct: 286 GLKINQQEEPGFE-VITRIDLGERPV----------VQRREPVSLEEWTKNIDSEGRILN 334

Query: 347 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406
            + +++ IF GG+ H LR++ W FLLGY+ +DST  ER  L+  K  EY  +K QW+SIS
Sbjct: 335 VDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSIS 394

Query: 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
            EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP + LL DIL+TY  Y+FDLGY Q
Sbjct: 395 QEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQ 454

Query: 467 GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKV 517
           GMSDLLSP+L+VME+E  +FWCF + M+++  NF     GM +QL  LS +
Sbjct: 455 GMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTL 505
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
225445585 657 PREDICTED: GTPase-activating protein gyp 0.990 0.786 0.781 0.0
297738991 684 unnamed protein product [Vitis vinifera] 0.990 0.755 0.742 0.0
449443057 655 PREDICTED: TBC1 domain family member 15- 0.984 0.784 0.760 0.0
356548490 656 PREDICTED: TBC1 domain family member 15- 0.982 0.782 0.745 0.0
356562977 655 PREDICTED: TBC1 domain family member 15- 0.980 0.781 0.733 0.0
357478201 666 TBC1 domain family member [Medicago trun 0.980 0.768 0.732 0.0
255572477 645 conserved hypothetical protein [Ricinus 0.954 0.772 0.758 0.0
186531517 673 RabGAP/TBC domain-containing protein [Ar 0.980 0.760 0.690 0.0
297792599 674 hypothetical protein ARALYDRAFT_495330 [ 0.980 0.759 0.687 0.0
334188345 690 RabGAP/TBC domain-containing protein [Ar 0.980 0.742 0.669 0.0
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/517 (78%), Positives = 459/517 (88%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVD 360
           + +EIPV  DP+EFDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG++
Sbjct: 301 VPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIE 360

Query: 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 420
           H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERK
Sbjct: 361 HSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERK 420

Query: 421 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME 480
           GLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM+
Sbjct: 421 GLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMK 480

Query: 481 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKV 517
           DE++SFWCFVALMERLGPNFNRDQNGMH+QLFA+SK+
Sbjct: 481 DEAESFWCFVALMERLGPNFNRDQNGMHTQLFAISKL 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334188345|ref|NP_001190524.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008855|gb|AED96238.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
DICTYBASE|DDB_G0288811 829 DDB_G0288811 "putative GTPase 0.603 0.379 0.401 8.2e-81
UNIPROTKB|F1NBY5 667 TBC1D15 "Uncharacterized prote 0.365 0.286 0.502 5.7e-67
UNIPROTKB|F1SH24 674 TBC1D15 "Uncharacterized prote 0.365 0.283 0.497 1.3e-65
UNIPROTKB|F1PGI0 682 TBC1D15 "Uncharacterized prote 0.365 0.280 0.497 3.4e-65
UNIPROTKB|Q8TC07 691 TBC1D15 "TBC1 domain family me 0.365 0.276 0.502 4.4e-65
UNIPROTKB|J3KNI9 682 TBC1D15 "TBC1 domain family me 0.365 0.280 0.502 5.6e-65
UNIPROTKB|J9NYJ6 674 TBC1D15 "Uncharacterized prote 0.365 0.283 0.497 5.6e-65
UNIPROTKB|F1N090 675 TBC1D15 "Uncharacterized prote 0.365 0.282 0.497 1.2e-64
UNIPROTKB|F1LPD8 670 Tbc1d15 "Protein Tbc1d15" [Rat 0.365 0.285 0.497 3.8e-64
MGI|MGI:1913937 671 Tbc1d15 "TBC1 domain family, m 0.365 0.284 0.492 5.4e-63
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 8.2e-81, Sum P(3) = 8.2e-81
 Identities = 137/341 (40%), Positives = 200/341 (58%)

Query:   205 DSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTS 264
             D+  N N   +N    +++++ S       ++A    R+IS  + + F+ VT+ A+    
Sbjct:   363 DNENNSNNTNSNNNSNNNANTGSLSTSPTNKRALK--REISSSIFDNFAKVTQLAKSAQK 420

Query:   265 QLFRENHSNGFGAFEKKFDSQSALDFD---HKASYDTETIVNE----IPVAPD---PVEF 314
              +F E        F     S+S++  +     A+     I+NE    +  + D   P   
Sbjct:   421 NIFEEPAKRIDNHFRNLIGSKSSIGSNLSPQNANNQYFDILNESGSSLNASSDYFTPFNI 480

Query:   315 DKL--TLVWGKPRQP--PLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVW 368
               L  ++  G  R+   P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW
Sbjct:   481 SSLNFSIELGANRRECNPMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVW 540

Query:   369 AFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVV 428
              FLLG Y++DSTY+ RE ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+
Sbjct:   541 PFLLGVYSFDSTYSSREVVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVI 600

Query:   429 RTDR-SVTFFDGDD----NPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---E 480
             RTDR    F  G+D    N N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM    
Sbjct:   601 RTDRLHPMFIQGEDDIDSNENLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVS 660

Query:   481 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI 521
              E + FWCF  LM+RL  NF++DQNGMH QL  LSK+  FI
Sbjct:   661 KEVECFWCFKGLMDRLESNFHKDQNGMHHQLSTLSKLLKFI 701
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 1e-35
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 8e-29
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 4e-22
pfam12068210 pfam12068, DUF3548, Domain of unknown function (DU 3e-18
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  132 bits (333), Expect = 1e-35
 Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 20/163 (12%)

Query: 355 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 414
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 415 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 474
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 475 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSK 516
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDR 144

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|192931 pfam12068, DUF3548, Domain of unknown function (DUF3548) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
KOG1648 813 consensus Uncharacterized conserved protein, conta 100.0
PF12068213 DUF3548: Domain of unknown function (DUF3548); Int 100.0
KOG2224 781 consensus Uncharacterized conserved protein, conta 100.0
KOG2058 436 consensus Ypt/Rab GTPase activating protein [Intra 99.96
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 99.95
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 99.95
COG5210 496 GTPase-activating protein [General function predic 99.91
KOG4567 370 consensus GTPase-activating protein [General funct 99.9
KOG1092 484 consensus Ypt/Rab-specific GTPase-activating prote 99.85
KOG2223 586 consensus Uncharacterized conserved protein, conta 99.83
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.82
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.8
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.73
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.68
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.62
KOG1102 397 consensus Rab6 GTPase activator GAPCenA and relate 99.45
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.23
KOG1093 725 consensus Predicted protein kinase (contains TBC a 98.99
KOG2595 395 consensus Predicted GTPase activator protein [Sign 98.98
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 98.54
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 97.84
KOG2224 781 consensus Uncharacterized conserved protein, conta 97.43
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 89.54
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-48  Score=398.75  Aligned_cols=419  Identities=21%  Similarity=0.288  Sum_probs=321.2

Q ss_pred             CCcEEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 009915           41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT  118 (522)
Q Consensus        41 ~~~~llf~Ks~V~vhpt~~~~d~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~I~sI~~~~  118 (522)
                      ++++|||+||+|.|+|.. +++.+||||+|+|....++|+|+||+.|++..+.++.+.+.||.++  |++.+|.+||||+
T Consensus       250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ  328 (813)
T KOG1648|consen  250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ  328 (813)
T ss_pred             chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence            678999999999999987 7999999999999999999999999999999888888999999876  9999999999999


Q ss_pred             CCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhhccccCCccc-cc
Q 009915          119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV-SI  193 (522)
Q Consensus       119 p~~g~~~~il~~~dG~~lPpL~F~~GG~-~~fL~~L~~~~~l~rS~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~-~~  193 (522)
                      ......+++||.+||++.|||+|+.||+ ..||+||++ +.|++.++||++|...+-   -+.|++. |+....... .-
T Consensus       329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~~~  406 (813)
T KOG1648|consen  329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAMEMG  406 (813)
T ss_pred             ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhhcC
Confidence            9877789999999999999999999999 799999988 999999999999999762   2566553 222111100 01


Q ss_pred             CCCCCCCcccC-CCCCcccccccCC---------------CCCCCCCcccccccc---ccCcCCChhhhhHHHHHhhHHH
Q 009915          194 ASGSSTPVSIG-DSPTNVNLERTNG---------------GLGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSL  254 (522)
Q Consensus       194 ~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~~~s~  254 (522)
                      ...+++|+++. ++++..+....|-               ...+.+.+|++..+.   ...+++.++ .+.+.++     
T Consensus       407 ~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll-----  480 (813)
T KOG1648|consen  407 TGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL-----  480 (813)
T ss_pred             cccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----
Confidence            12356788875 5555544332221               112233445443331   122334444 3667787     


Q ss_pred             HHHHHHHHhhhhhhccCCCCCccchhccccccccccCcCCCccccccc---c-CCCCCCCchhhcccccccCCCCCCCCC
Q 009915          255 VTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---N-EIPVAPDPVEFDKLTLVWGKPRQPPLG  330 (522)
Q Consensus       255 vt~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~e~~~---~-~~~~~~~~~e~~~~~~~~~~~r~~plt  330 (522)
                      |.+|.+|+++++|     |||..+            |+|+++|++++.   + .+-.|++|.           ....++|
T Consensus       481 C~sMk~QI~sRAF-----YGWLay------------cRHLsTvRTHLsaLV~h~~~~pD~pc-----------da~~glt  532 (813)
T KOG1648|consen  481 CQSMKNQIMSRAF-----YGWLAY------------CRHLSTVRTHLSALVDHKTLIPDDPC-----------DASAGLT  532 (813)
T ss_pred             HHHHHHHHHHHHH-----HHHHHH------------HHHHHHHHHHHHHHhcccccCCCCCC-----------Ccccccc
Confidence            9999999999999     999654            556677777753   2 223344443           3356899


Q ss_pred             HHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHH
Q 009915          331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  410 (522)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~  410 (522)
                      +.-|+.+..+.  .+..-++.+...+|++....|+.+|+++++.+...+...+.+.........|++..-.|..      
T Consensus       533 ~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~------  604 (813)
T KOG1648|consen  533 EKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR------  604 (813)
T ss_pred             HHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh------
Confidence            99999998542  2333455566679999999999999999999999888777666777778888887766653      


Q ss_pred             hhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcCChHHHHHHHH
Q 009915          411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV  490 (522)
Q Consensus       411 ~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~~E~~AFw~F~  490 (522)
                             -..++|+||+.|++++..+|.+.+  +++. +++.++|...|-.-||.|||+||++|++..+++|...-=||.
T Consensus       605 -------~~~~~~~kd~e~~~~~~~~fs~~~--~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s  674 (813)
T KOG1648|consen  605 -------ANLHRIDKDVERCDRNLMFFSNKD--NLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS  674 (813)
T ss_pred             -------hheeeecchhhhCcchheeecCCc--chhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence                   234799999999999999999765  5576 899999999999999999999999999999999888878999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHH
Q 009915          491 ALMERLGPNFNRDQNGMHSQLFALS  515 (522)
Q Consensus       491 ~Lme~~~~~F~~d~~Gm~~ql~~L~  515 (522)
                      -+|-+-...|.. ..||.+.|..++
T Consensus       675 ~~~~~q~~~~~q-~~~~~~~l~~~r  698 (813)
T KOG1648|consen  675 LLMLRQRGKFPQ-RPGMSKCLLNLR  698 (813)
T ss_pred             HHHHHhcccCCC-CCCccccccccc
Confidence            888776666643 246655555444

>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 1e-05
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 1e-05
3hzj_A 310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-04
3dzx_A 346 Crystal Structure Of The Rabgap Domain Of Human Tbc 3e-04
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 39/202 (19%)
Query: 344 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403
           +++   LR+ I + G+    R  VW  L+GY   ++   E    R  K+ EY +  +   
Sbjct: 20  IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQR--KRKEYRDSLKH-- 74
Query: 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLG 463
           + S + +R    + +    I+ D+ RT+  +  +      N   L+ IL  ++  +   G
Sbjct: 75  TFSDQHSRDIPTWHQ----IEIDIPRTNPHIPLYQFKSVQNS--LQRILYLWAIRHPASG 128
Query: 464 YCQGMSDLLSPIL--FVMED--------------------------ESQSFWCFVALMER 495
           Y QG++DL++P    F+ E                           E+ +FWC   L+E+
Sbjct: 129 YVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ 188
Query: 496 LGPNFNRDQNGMHSQLFALSKV 517
           +  N+   Q G+  Q+  LS++
Sbjct: 189 ITDNYIHGQPGILRQVKNLSQL 210
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-47
2qfz_A 345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-47
2qq8_A 334 TBC1 domain family member 14; structural genomics 4e-28
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 3e-25
3qye_A 331 TBC1 domain family member 1; rabgap, RAB, myocytes 9e-25
3qwl_A 294 TBC1 domain family member 7; RAB GTPase activation 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  169 bits (429), Expect = 1e-47
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 40/214 (18%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L  +  +++   LR +I + G+    R  VW  L+GY   ++    +E     K
Sbjct: 9   SKFDNIL-KDKTIINQQDLR-QISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRK 64

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           + EY +  +   S       + ++       I+ D+ RT+  +  +      N   L+ I
Sbjct: 65  RKEYRDSLKHTFS------DQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 116

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 483
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 117 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 176

Query: 484 QSFWCFVALMERLGPNFNRDQNGMHSQLFALSKV 517
            +FWC   L+E++  N+   Q G+  Q+  LS++
Sbjct: 177 DTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQL 210
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 99.97
2qfz_A 345 TBC1 domain family member 22A; RAB-GAP, GTPase act 99.97
2qq8_A 334 TBC1 domain family member 14; structural genomics 99.97
3qye_A 331 TBC1 domain family member 1; rabgap, RAB, myocytes 99.97
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 99.96
4hl4_A 292 TBC1 domain family member 20; rabgap, RAB1B, hydro 99.93
3qwl_A 294 TBC1 domain family member 7; RAB GTPase activation 99.79
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 95.75
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 94.7
1pfj_A108 TFIIH basal transcription factor complex P62 subun 88.37
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=99.97  E-value=1e-31  Score=283.37  Aligned_cols=179  Identities=23%  Similarity=0.432  Sum_probs=153.4

Q ss_pred             HHHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHH
Q 009915          331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA  410 (522)
Q Consensus       331 ~~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~  410 (522)
                      .++|++++..+. .++.++||+++ ++|||+.+|+.||++|||++|.+.+.  |......++..|..++++|......  
T Consensus         8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~~--~~~~l~~~~~~Y~~l~~~~~~~~~~--   81 (396)
T 1fkm_A            8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQHS--   81 (396)
T ss_dssp             HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSCS--
T ss_pred             HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChhH--HHHHHHHHHHHHHHHHHHHhhccCc--
Confidence            489999998643 47899999977 68999999999999999999987654  4566777899999999987652110  


Q ss_pred             hhhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcC----------
Q 009915          411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------  480 (522)
Q Consensus       411 ~~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~----------  480 (522)
                          ...+..++|++||.||+|++++|..  ..+++.|+|||.+|+.+||++||||||++||||||+|+.          
T Consensus        82 ----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~  155 (396)
T 1fkm_A           82 ----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  155 (396)
T ss_dssp             ----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             ----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence                1123346899999999999999986  457899999999999999999999999999999999862          


Q ss_pred             --------C----------hHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHh
Q 009915          481 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKVSLFI  521 (522)
Q Consensus       481 --------~----------E~~AFw~F~~Lme~~~~~F~~d~~Gm~~ql~~L~~Llq~~  521 (522)
                              +          |++|||||++||+++..+|..++.|++.++..|..||+..
T Consensus       156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~  214 (396)
T 1fkm_A          156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRI  214 (396)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Confidence                    1          8999999999999999999999999999999999999864
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 7e-30
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 7e-30
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 483
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 484 QSFWCFVALMERLGPNF 500
            +FWC   L+E++  N+
Sbjct: 176 DTFWCLTKLLEQITDNY 192

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 96.6
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 93.9
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 93.68
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=267.80  Aligned_cols=158  Identities=23%  Similarity=0.444  Sum_probs=132.6

Q ss_pred             HHHHHhhhcCCCcCCHHHHHHHHHcCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhhcCChHHHh
Q 009915          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  411 (522)
Q Consensus       332 ~~W~~~~~~~g~~~~~~~Lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~w~~~~~~q~~  411 (522)
                      ++|.+++.+ ..+++.++||+++ ++|||+++|+.||++|||++|.+++.+++  ....+++.|..+...+.......  
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~l~-~~Gip~~lR~~vW~~llg~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~--   81 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEG--FLQRKRKEYRDSLKHTFSDQHSR--   81 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGHHH--HHHHHHHHHHHHHHHTSSSSCST--
T ss_pred             HHHHHHhcc-cCCCCHHHHHHHH-HcCCChHHHHHHHHHHHhhcCCchhhHHH--HHHHHhhhhhhhhhhhhhccccc--
Confidence            679998854 5678999999877 68999999999999999999999886654  45667788888777654432211  


Q ss_pred             hhhhhhhhcccccccccccCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCccccchhHhHHHHHHhcC-----------
Q 009915          412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-----------  480 (522)
Q Consensus       412 ~~~~~~e~~~~IekDV~RT~r~~~~f~~~~~~~~~~L~~IL~ay~~~n~~lGYvQGMsdL~apLL~v~~-----------  480 (522)
                          ..+...+|++||.||+|++++|..  .++++.|+|||.+|+.+||++|||||||+||||||+++.           
T Consensus        82 ----~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~  155 (194)
T d1fkma1          82 ----DIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD  155 (194)
T ss_dssp             ----HHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred             ----chHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence                223446899999999999999986  457899999999999999999999999999999998872           


Q ss_pred             -----------------ChHHHHHHHHHHHHhhccCCC
Q 009915          481 -----------------DESQSFWCFVALMERLGPNFN  501 (522)
Q Consensus       481 -----------------~E~~AFw~F~~Lme~~~~~F~  501 (522)
                                       .|++|||||++||+++.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                             289999999999999998885
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure