Citrus Sinensis ID: 009971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| P52417 | 512 | Glucose-1-phosphate adeny | N/A | no | 0.982 | 1.0 | 0.882 | 0.0 | |
| Q9M462 | 520 | Glucose-1-phosphate adeny | N/A | no | 0.976 | 0.978 | 0.866 | 0.0 | |
| P23509 | 521 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.986 | 0.873 | 0.0 | |
| Q42882 | 521 | Glucose-1-phosphate adeny | N/A | no | 0.986 | 0.986 | 0.863 | 0.0 | |
| P55228 | 520 | Glucose-1-phosphate adeny | yes | no | 0.988 | 0.990 | 0.849 | 0.0 | |
| P52416 | 508 | Glucose-1-phosphate adeny | N/A | no | 0.911 | 0.935 | 0.901 | 0.0 | |
| P55232 | 489 | Glucose-1-phosphate adeny | N/A | no | 0.888 | 0.946 | 0.901 | 0.0 | |
| P15280 | 514 | Glucose-1-phosphate adeny | yes | no | 0.880 | 0.892 | 0.902 | 0.0 | |
| P55238 | 513 | Glucose-1-phosphate adeny | N/A | no | 0.888 | 0.902 | 0.900 | 0.0 | |
| P30523 | 473 | Glucose-1-phosphate adeny | N/A | no | 0.856 | 0.942 | 0.894 | 0.0 |
| >sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/518 (88%), Positives = 491/518 (94%), Gaps = 6/518 (1%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRSERR 63
MA+IG LKVP S S++++SS+S +++ + L+F+SS LSGDKIF+ + R S R
Sbjct: 1 MAAIGVLKVPPSSSSSSSSSSS-----KAIARNLSFTSSHLSGDKIFTLSGRTRRTSGRN 55
Query: 64 PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 123
P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL
Sbjct: 56 PFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 115
Query: 124 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 183
IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENP
Sbjct: 116 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENP 175
Query: 184 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243
NWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVAALPMD
Sbjct: 176 NWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAALPMD 235
Query: 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303
E RATAFGLMKIDEEGRIIEFSE PKGEQLKAMKVDTTILGLDD+RAKEMPYIASMGIYV
Sbjct: 236 EARATAFGLMKIDEEGRIIEFSENPKGEQLKAMKVDTTILGLDDDRAKEMPYIASMGIYV 295
Query: 304 ISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363
+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYNANLGI
Sbjct: 296 VSKHVMLDLLRDKFPGANDFGSEVIPGATELGMRVQAYLYDGYWEDIGTIEAFYNANLGI 355
Query: 364 TKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRS 423
TKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGLRS
Sbjct: 356 TKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRS 414
Query: 424 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 483
CISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VK
Sbjct: 415 CISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVK 474
Query: 484 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
I+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 475 IINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Vicia faba (taxid: 3906) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/532 (86%), Positives = 493/532 (92%), Gaps = 23/532 (4%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRR----SVVKRLAFSSSQLSGDK-------I 49
MA+MA+IGSLKVPSS S+NH+RR S K L+FSSS L+G+K I
Sbjct: 1 MATMAAIGSLKVPSS---------SSNHTRRLSSSSQRKTLSFSSSSLTGEKLNPTQEII 51
Query: 50 FSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKK 109
S G+ R R P +VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKK
Sbjct: 52 ISNLPRGNER--RTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKK 109
Query: 110 RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169
RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG
Sbjct: 110 RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169
Query: 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR 229
FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHR
Sbjct: 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHR 229
Query: 230 ETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDER 289
ETDADITVAALPMDEKRATAFGLMKID+EGRIIEF+EKPKGEQLKAMKVDTTILGLDDER
Sbjct: 230 ETDADITVAALPMDEKRATAFGLMKIDDEGRIIEFAEKPKGEQLKAMKVDTTILGLDDER 289
Query: 290 AKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWED 349
AKEMP+IASMGIYV+SK+VML+LLRD+FPGANDFGSEVIPGAT +G+RVQAYLYDGYWED
Sbjct: 290 AKEMPFIASMGIYVVSKNVMLDLLRDQFPGANDFGSEVIPGATDLGLRVQAYLYDGYWED 349
Query: 350 IGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVI 409
IGTIEAFYNANLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVI
Sbjct: 350 IGTIEAFYNANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVI 408
Query: 410 KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 469
KNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR LAAKGS+PIGIG++SHIKR
Sbjct: 409 KNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKR 468
Query: 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
AIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 469 AIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Brassica napus (taxid: 3708) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/522 (87%), Positives = 484/522 (92%), Gaps = 8/522 (1%)
Query: 5 ASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSS-QLSGDKIF---SKAVTGDRRS 60
ASIG+LK SSPS+ + N S R+V R SS L+GDK+ S G R +
Sbjct: 3 ASIGALK--SSPSSNNCINERRNDSTRAVSSRNLSFSSSHLAGDKLMPVSSLRSQGVRFN 60
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 61 VRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 120
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS
Sbjct: 121 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 180
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENP+WFQGTADAVRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 181 PENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 240
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASM
Sbjct: 241 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 300
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 301 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 360
Query: 360 NLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
NLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV
Sbjct: 361 NLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
Query: 420 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479
GLRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIG
Sbjct: 420 GLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 479
Query: 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
DNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 480 DNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/522 (86%), Positives = 482/522 (92%), Gaps = 8/522 (1%)
Query: 5 ASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSS-QLSGDKIF---SKAVTGDRRS 60
ASIG+LK SSPS+ + N S R++ R SS L+GDK+ S G R +
Sbjct: 3 ASIGALK--SSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFN 60
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 61 VRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 120
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG YKNEGFVEVLAAQQS
Sbjct: 121 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGEYKNEGFVEVLAAQQS 180
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENP+WFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 181 PENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 240
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASM
Sbjct: 241 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 300
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 301 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 360
Query: 360 NLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
NLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV
Sbjct: 361 NLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
Query: 420 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479
GLRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN KRAIIDKNARIG
Sbjct: 420 GLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIG 479
Query: 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
DNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct: 480 DNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/526 (84%), Positives = 485/526 (92%), Gaps = 11/526 (2%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKR-LAFSSSQLSGDKIFSKAVTGDRR 59
MAS+++IG LKVP + ++SNS + +V R L+FSSS S D S T R
Sbjct: 1 MASVSAIGVLKVPPA-----STSNSTGKATEAVPTRTLSFSSSVTSSDDKISLKSTVSRL 55
Query: 60 SE----RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV 115
+ R PI+VSP+AVSDS+NSQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAV
Sbjct: 56 CKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAV 115
Query: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA
Sbjct: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
Query: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADI 235
AQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADI
Sbjct: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADI 235
Query: 236 TVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295
TVAALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGE LKAMKVDTTILGLDD+RAKEMP+
Sbjct: 236 TVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPF 295
Query: 296 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEA 355
IASMGIYV+S+DVML+LLR++FPGANDFGSEVIPGATS+G+RVQAYLYDGYWEDIGTIEA
Sbjct: 296 IASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEA 355
Query: 356 FYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH 415
FYNANLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH
Sbjct: 356 FYNANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH 414
Query: 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 475
HSVVGLRSCISEGAIIED+LLMGADYYET ++ L+AKGSVPIGIGKNSHIKRAIIDKN
Sbjct: 415 HSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKN 474
Query: 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
ARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct: 475 ARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/478 (90%), Positives = 462/478 (96%), Gaps = 3/478 (0%)
Query: 46 GDKIFSKAVTGDRRSE--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRL 103
G+KI + + G R + + ++P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRL
Sbjct: 32 GNKILTVSGNGAPRGRCTLKHVFLTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRL 91
Query: 104 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163
YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+G
Sbjct: 92 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLG 151
Query: 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYER 223
GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+
Sbjct: 152 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEK 211
Query: 224 FIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTIL 283
FIQAHRE+DADITVAALPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTIL
Sbjct: 212 FIQAHRESDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTIL 271
Query: 284 GLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 343
GLDDERAKEMP+IASMGIYVISK+VML+LLRDKFPGANDFGSEVIPGATSIGMRVQAYLY
Sbjct: 272 GLDDERAKEMPFIASMGIYVISKNVMLDLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 331
Query: 344 DGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVI 403
DGYWEDIGTIEAFYNANLGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSVI
Sbjct: 332 DGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSVI 390
Query: 404 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 463
GEGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGK
Sbjct: 391 GEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGK 450
Query: 464 NSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
NSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct: 451 NSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Vicia faba (taxid: 3906) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/479 (90%), Positives = 453/479 (94%), Gaps = 16/479 (3%)
Query: 46 GDKIFSKAVTGDRR---SERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTR 102
GDKI + + R S R PIVVSP+AVSDSKNSQTCLDPEASRSVLGIILGGGAGTR
Sbjct: 24 GDKIQTTSFLNRRYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTR 83
Query: 103 LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM 162
LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM
Sbjct: 84 LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM 143
Query: 163 GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE 222
GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE
Sbjct: 144 GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYE 203
Query: 223 RFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTI 282
RF+QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTI
Sbjct: 204 RFVQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTI 263
Query: 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYL 342
LGLDDERAKEMP+IASMGIYVISKDVMLNLLR++FPGANDFGSEVIPGATSIG+RVQAYL
Sbjct: 264 LGLDDERAKEMPFIASMGIYVISKDVMLNLLREQFPGANDFGSEVIPGATSIGLRVQAYL 323
Query: 343 YDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSV 402
YDGYWEDIGTIEAFYNANLGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSV
Sbjct: 324 YDGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSV 382
Query: 403 IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG 462
IGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG
Sbjct: 383 IGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG 442
Query: 463 KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct: 443 ------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4 | Back alignment and function description |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/460 (90%), Positives = 446/460 (96%), Gaps = 1/460 (0%)
Query: 62 RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY 121
RRP+V SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY
Sbjct: 56 RRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY 115
Query: 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE 181
RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY +N+GGYKNEGFVEVLAAQQSP+
Sbjct: 116 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPD 175
Query: 182 NPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALP 241
NPNWFQGTADAVRQYLWLFEEHNV+EFL+LAGDHLYRMDYE+FIQAHRETD+DITVAALP
Sbjct: 176 NPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALP 235
Query: 242 MDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGI 301
MDEKRATAFGLMKIDEEGRI+EF+EKPKGEQLKAM VDTTILGLDD RAKEMPYIASMGI
Sbjct: 236 MDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGI 295
Query: 302 YVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361
YVISK+VML LLR++FPGANDFGSEVIPGAT+IGMRVQAYLYDGYWEDIGTIEAFYNANL
Sbjct: 296 YVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANL 355
Query: 362 GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 421
GITKKP+PDF FYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGL
Sbjct: 356 GITKKPVPDFS-FYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGL 414
Query: 422 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481
RSCISEGAIIED+LLMGADYYET+AD++ L KG +PIGIGKN HI+RAIIDKNARIGDN
Sbjct: 415 RSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDN 474
Query: 482 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
VKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 475 VKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1 | Back alignment and function description |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/464 (90%), Positives = 444/464 (95%), Gaps = 1/464 (0%)
Query: 58 RRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 117
R RRP SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPL
Sbjct: 51 RPVPRRPFFFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPL 110
Query: 118 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 177
GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQ
Sbjct: 111 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQ 170
Query: 178 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV 237
QSP+NP+WFQGTADAVRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITV
Sbjct: 171 QSPDNPDWFQGTADAVRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITV 230
Query: 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297
AALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGEQLKAM VDTTILGL+D RAKEMPYIA
Sbjct: 231 AALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLEDARAKEMPYIA 290
Query: 298 SMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY 357
SMGIYVISK VML LLR++FPGANDFGSEVIPGATS GMRVQAYLYDGYWEDIGTIEAFY
Sbjct: 291 SMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFY 350
Query: 358 NANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHS 417
NANLGITKKPIPDF FYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHS
Sbjct: 351 NANLGITKKPIPDFS-FYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHS 409
Query: 418 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477
VVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNAR
Sbjct: 410 VVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNAR 469
Query: 478 IGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
IGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 470 IGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1 | Back alignment and function description |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/447 (89%), Positives = 424/447 (94%), Gaps = 1/447 (0%)
Query: 75 SKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 134
S + L+P SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS
Sbjct: 28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 87
Query: 135 NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVR 194
NISKIYV TQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADAVR
Sbjct: 88 NISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADAVR 147
Query: 195 QYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK 254
QYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMK
Sbjct: 148 QYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMK 207
Query: 255 IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314
IDEEGRIIEF+EKPKGEQLKAM VDTTILGLDD RAKEMPYIASMGIYVISK VML LLR
Sbjct: 208 IDEEGRIIEFAEKPKGEQLKAMMVDTTILGLDDARAKEMPYIASMGIYVISKHVMLQLLR 267
Query: 315 DKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYF 374
++FPGANDFGSEVIPGATS GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF F
Sbjct: 268 EQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFS-F 326
Query: 375 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT 434
YDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT
Sbjct: 327 YDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT 386
Query: 435 LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAA 494
LLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAA
Sbjct: 387 LLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAA 446
Query: 495 RETDGYFIKSGIVTIIKDALIPSGTII 521
RETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 447 RETDGYFIKSGIVTVIKDALLPSGTVI 473
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| 111660950 | 520 | ADP-glucose pyrophosphorylase small subu | 0.998 | 1.0 | 0.994 | 0.0 | |
| 5917789 | 515 | ADP-glucose pyrophosphorylase small subu | 0.988 | 1.0 | 0.953 | 0.0 | |
| 356501685 | 515 | PREDICTED: glucose-1-phosphate adenylylt | 0.988 | 1.0 | 0.886 | 0.0 | |
| 356501687 | 516 | PREDICTED: glucose-1-phosphate adenylylt | 0.988 | 0.998 | 0.885 | 0.0 | |
| 89089752 | 520 | ADP-glucose pyrophosphorylase small subu | 0.990 | 0.992 | 0.892 | 0.0 | |
| 1237080 | 516 | ADP-glucose pyrophosphorylase [Pisum sat | 0.988 | 0.998 | 0.888 | 0.0 | |
| 260751192 | 515 | ADP-glucose pyrophosphorylase small subu | 0.988 | 1.0 | 0.884 | 0.0 | |
| 7671230 | 523 | ADP-glucose pyrophosphorylase catalytic | 0.988 | 0.984 | 0.855 | 0.0 | |
| 357462397 | 514 | Glucose-1-phosphate adenylyltransferase | 0.982 | 0.996 | 0.889 | 0.0 | |
| 126363757 | 523 | ADP-glucose pyrophosphorylase alpha subu | 0.986 | 0.982 | 0.875 | 0.0 |
| >gi|111660950|gb|ABH12112.1| ADP-glucose pyrophosphorylase small subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/521 (99%), Positives = 519/521 (99%), Gaps = 1/521 (0%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS
Sbjct: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL
Sbjct: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG
Sbjct: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
Query: 361 LGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 420
LGITKKPIPDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 361 LGITKKPIPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
Query: 421 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480
LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK+ARIGD
Sbjct: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKDARIGD 479
Query: 481 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII
Sbjct: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917789|gb|AAD56041.1|AF184597_1 ADP-glucose pyrophosphorylase small subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/518 (95%), Positives = 498/518 (96%), Gaps = 3/518 (0%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRSERR 63
MASIGSLKVPSSPSTA TSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRR ERR
Sbjct: 1 MASIGSLKVPSSPSTAATSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRRERR 60
Query: 64 PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 123
+ QAVSDSKNS LDPEASR VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL
Sbjct: 61 RSLCLLQAVSDSKNSP--LDPEASRRVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 118
Query: 124 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 183
IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP
Sbjct: 119 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 178
Query: 184 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243
NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD
Sbjct: 179 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 238
Query: 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303
EK ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDD R KEMP+IASMGIYV
Sbjct: 239 EKLATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDARGKEMPFIASMGIYV 298
Query: 304 ISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363
ISKDVML+LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI
Sbjct: 299 ISKDVMLSLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 358
Query: 364 TKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRS 423
TKKPIPDF FYDRS PIYTQPRYLPPSKMLDADVTDSVIGE CVIKNCKIHHSVVGLRS
Sbjct: 359 TKKPIPDFS-FYDRSDPIYTQPRYLPPSKMLDADVTDSVIGEFCVIKNCKIHHSVVGLRS 417
Query: 424 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 483
CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG+NVK
Sbjct: 418 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGNNVK 477
Query: 484 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
IVN DSVQEAARETDGYFIKSGI TIIKDALIPSGTII
Sbjct: 478 IVNRDSVQEAARETDGYFIKSGIDTIIKDALIPSGTII 515
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501685|ref|XP_003519654.1| PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/521 (88%), Positives = 496/521 (95%), Gaps = 6/521 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IGSL VP S SS S+N R+S + L+FS+SQL GDKI + +V+ +
Sbjct: 1 MASMAAIGSLNVPCS-----ASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKI 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P++V+P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKE+PYIASMG
Sbjct: 236 PMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYV+SK+VML+LLR+KFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 296 IYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 355
Query: 361 LGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 420
LGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 356 LGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 414
Query: 421 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480
LRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIG+NSHIKRAIIDKNARIG+
Sbjct: 415 LRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIGE 474
Query: 481 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
NVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 475 NVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501687|ref|XP_003519655.1| PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/522 (88%), Positives = 496/522 (95%), Gaps = 7/522 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IGSL VP S SS S+N R+S + L+FS+SQL GDKI + +V+ +
Sbjct: 1 MASMAAIGSLNVPCS-----ASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKI 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P++V+P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKE+PYIASMG
Sbjct: 236 PMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMR-VQAYLYDGYWEDIGTIEAFYNA 359
IYV+SK+VML+LLR+KFPGANDFGSEVIPGATSIGMR VQAYLYDGYWEDIGTIEAFYNA
Sbjct: 296 IYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRNVQAYLYDGYWEDIGTIEAFYNA 355
Query: 360 NLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
NLGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV
Sbjct: 356 NLGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 414
Query: 420 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479
GLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIG+NSHIKRAIIDKNARIG
Sbjct: 415 GLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIG 474
Query: 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
+NVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 475 ENVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89089752|gb|ABD60582.1| ADP-glucose pyrophosphorylase small subunit [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/522 (89%), Positives = 490/522 (93%), Gaps = 6/522 (1%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRR---S 60
MASIG+LK SP + N+ +R + L+FSSS + GDK+ S A ++ S
Sbjct: 1 MASIGALKSSPSPKNCI-NERRNDATRAMSFRNLSFSSSHIYGDKLMSMATLHSQQRHSS 59
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
ERR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 60 ERRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS
Sbjct: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAA 239
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKEMP+IASM
Sbjct: 240 LPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASM 299
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 359
Query: 360 NLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
NLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV
Sbjct: 360 NLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 418
Query: 420 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479
GLRSCISEGAIIED+LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG
Sbjct: 419 GLRSCISEGAIIEDSLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 478
Query: 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
DNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 479 DNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 520
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1237080|emb|CAA65539.1| ADP-glucose pyrophosphorylase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/522 (88%), Positives = 499/522 (95%), Gaps = 7/522 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IG LKVP S S++++SS+S S +++ + L+F+SSQL GDKIF+ V+G RRS
Sbjct: 1 MASMAAIGVLKVPPSSSSSSSSSSS---SSKAIARNLSFTSSQLCGDKIFT--VSGTRRS 55
Query: 61 E-RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 56 SGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 115
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQS
Sbjct: 116 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQS 175
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVA+
Sbjct: 176 PENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAS 235
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDE RATAFGLMKIDEEGRI+EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM
Sbjct: 236 LPMDEARATAFGLMKIDEEGRIVEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 295
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYV+SK VML+LLRDKFPGANDFGSEVIPGAT +G+RVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 296 GIYVVSKHVMLDLLRDKFPGANDFGSEVIPGATELGLRVQAYLYDGYWEDIGTIEAFYNA 355
Query: 360 NLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 419
NLGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVV
Sbjct: 356 NLGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVV 414
Query: 420 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479
GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHIKRAIIDKNARIG
Sbjct: 415 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIKRAIIDKNARIG 474
Query: 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
D+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 475 DDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 516
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|260751192|gb|ACX48912.1| ADP-glucose pyrophosphorylase small subunit S1 isoform [Lens culinaris] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/521 (88%), Positives = 493/521 (94%), Gaps = 6/521 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IG LKVP S S++ +SS+S +++ + L+F+SSQLSGDKIF+ + T R S
Sbjct: 1 MASMAAIGVLKVPPSSSSSLSSSSS-----KAIARNLSFTSSQLSGDKIFTVSGTRTRSS 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPFIVSPEAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDE RATAFGLMKIDEEGRIIEFSEKPKG QLKAMKVDTTILGLDDERAKEMPYIASMG
Sbjct: 236 PMDEARATAFGLMKIDEEGRIIEFSEKPKGGQLKAMKVDTTILGLDDERAKEMPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYV+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 296 IYVVSKHVMLDLLRDKFPGANDFGSEVIPGATDLGMRVQAYLYDGYWEDIGTIEAFYNAN 355
Query: 361 LGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 420
LGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVG
Sbjct: 356 LGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVG 414
Query: 421 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480
LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHIKRAIIDKNARIGD
Sbjct: 415 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIKRAIIDKNARIGD 474
Query: 481 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
+VKI+NSD+VQEAARET+GYFIKSGIVT+I +A IPSGT+I
Sbjct: 475 DVKIINSDNVQEAARETEGYFIKSGIVTVINEAFIPSGTVI 515
|
Source: Lens culinaris Species: Lens culinaris Genus: Lens Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7671230|gb|AAF66434.1|AF249915_1 ADP-glucose pyrophosphorylase catalytic subunit [Perilla frutescens] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/526 (85%), Positives = 484/526 (92%), Gaps = 11/526 (2%)
Query: 4 MASIGSLKVPSSP-STATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS-- 60
MA+ K S+P TA + +S + KRL+F++S ++G++I S RRS
Sbjct: 1 MAATAVFK--STPGKTAIANYSSLEDVNSTSFKRLSFAASNVAGERITSPPRLRVRRSRA 58
Query: 61 ----ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV 115
ERR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILG GAGT+LYPLTKKRAKPAV
Sbjct: 59 GGELERRSPVIVSPKAVSDSQNSQTCLDPDASRSVLGIILGSGAGTKLYPLTKKRAKPAV 118
Query: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
P GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA
Sbjct: 119 PFGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 178
Query: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADI 235
AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL+LAGDHLYRMDYERFIQAHRETDADI
Sbjct: 179 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADI 238
Query: 236 TVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295
TVAALPMDEKR TAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDD+RAKEMPY
Sbjct: 239 TVAALPMDEKRPTAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDKRAKEMPY 298
Query: 296 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEA 355
IASMGIYV+SKDVMLNLLRD+FP ANDFGSEVIPGAT++G+RVQAYL+DGYWEDIGTIEA
Sbjct: 299 IASMGIYVVSKDVMLNLLRDEFPAANDFGSEVIPGATAMGLRVQAYLFDGYWEDIGTIEA 358
Query: 356 FYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH 415
FYNANLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH
Sbjct: 359 FYNANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH 417
Query: 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 475
HSVVGLRSCI+EGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKN+HIKRAIIDKN
Sbjct: 418 HSVVGLRSCIAEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNTHIKRAIIDKN 477
Query: 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
ARIG+NVKIVN D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 478 ARIGENVKIVNGDNVQEAARETDGYFIKSGIVTVIKDALIPSGTMI 523
|
Source: Perilla frutescens Species: Perilla frutescens Genus: Perilla Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462397|ref|XP_003601480.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula] gi|355490528|gb|AES71731.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/523 (88%), Positives = 495/523 (94%), Gaps = 11/523 (2%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMASIG LKVPSS S++++SS+S +++ + L+F+SSQL GDKI RRS
Sbjct: 1 MASMASIGVLKVPSSSSSSSSSSSS-----KAIARNLSFTSSQLCGDKI---TTVSTRRS 52
Query: 61 E--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 118
+P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG
Sbjct: 53 YGCSKPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 112
Query: 119 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 178
ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ
Sbjct: 113 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 172
Query: 179 SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVA 238
SPENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVA
Sbjct: 173 SPENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVA 232
Query: 239 ALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298
ALPMDE RATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS
Sbjct: 233 ALPMDEARATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 292
Query: 299 MGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358
MGIYV+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYN
Sbjct: 293 MGIYVVSKHVMLDLLRDKFPGANDFGSEVIPGATELGMRVQAYLYDGYWEDIGTIEAFYN 352
Query: 359 ANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV 418
ANLGITKKP+PDF FYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSV
Sbjct: 353 ANLGITKKPVPDFS-FYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSV 411
Query: 419 VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478
VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI
Sbjct: 412 VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 471
Query: 479 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
GD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 472 GDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 514
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|126363757|dbj|BAF47745.1| ADP-glucose pyrophosphorylase alpha subunit IbAGPa2 [Ipomoea batatas] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/524 (87%), Positives = 490/524 (93%), Gaps = 10/524 (1%)
Query: 5 ASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFS-----KAVTGDRR 59
A+IG+ K+ +P T N + R + K L+F+SS LSGDK+ S + +G +
Sbjct: 3 AAIGAPKL--APYTCAAERNDGSARRAARFKSLSFASSNLSGDKLASLVSRRCSRSGGKS 60
Query: 60 SERR--PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 117
SERR PI+VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL
Sbjct: 61 SERRNAPIIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 120
Query: 118 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 177
GANYRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ
Sbjct: 121 GANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 180
Query: 178 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV 237
QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV
Sbjct: 181 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV 240
Query: 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297
AALPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDD+RAKE+P+IA
Sbjct: 241 AALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDQRAKELPFIA 300
Query: 298 SMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY 357
SMGIYVISK+VMLNLLR+KFPGANDFGSEVIPGATSIGMRVQAYL+DGYWEDIGTIEAFY
Sbjct: 301 SMGIYVISKNVMLNLLREKFPGANDFGSEVIPGATSIGMRVQAYLFDGYWEDIGTIEAFY 360
Query: 358 NANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHS 417
NANLGITKKP+PDF FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHS
Sbjct: 361 NANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHS 419
Query: 418 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477
VVGLRSCISEGAIIED+LLMGADYYETDADRR LAAKGS+PIGIG+NSHIKRAIIDKNAR
Sbjct: 420 VVGLRSCISEGAIIEDSLLMGADYYETDADRRLLAAKGSIPIGIGRNSHIKRAIIDKNAR 479
Query: 478 IGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
IGDNVKI+NSD VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 480 IGDNVKIINSDDVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 523
|
Source: Ipomoea batatas Species: Ipomoea batatas Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.928 | 0.930 | 0.887 | 9.3e-233 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.898 | 0.910 | 0.887 | 8.9e-228 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.921 | 0.919 | 0.539 | 7.2e-139 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.821 | 0.826 | 0.568 | 7.7e-135 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.831 | 0.827 | 0.530 | 4.9e-124 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.915 | 0.915 | 0.481 | 7.2e-123 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.811 | 0.888 | 0.485 | 1.9e-106 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.631 | 0.808 | 0.340 | 4.8e-54 | |
| TIGR_CMR|VC_A0699 | 407 | VC_A0699 "glucose-1-phosphate | 0.631 | 0.808 | 0.340 | 4.8e-54 | |
| UNIPROTKB|P0A6V1 | 431 | glgC "GlgC" [Escherichia coli | 0.666 | 0.805 | 0.367 | 1.1e-53 |
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2245 (795.3 bits), Expect = 9.3e-233, P = 9.3e-233
Identities = 434/489 (88%), Positives = 464/489 (94%)
Query: 37 LAFSSSQLSGDKIFSKAVTGDR--RS--ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLG 92
L+FSSS S D S T R +S R PI+VSP+AVSDS+NSQTCLDP+AS SVLG
Sbjct: 33 LSFSSSVTSSDDKISLKSTVSRLCKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSSVLG 92
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR
Sbjct: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLA 212
HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LA
Sbjct: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILA 212
Query: 213 GDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQ 272
GDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGE
Sbjct: 213 GDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEH 272
Query: 273 LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGAT 332
LKAMKVDTTILGLDD+RAKEMP+IASMGIYV+S+DVML+LLR++FPGANDFGSEVIPGAT
Sbjct: 273 LKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGAT 332
Query: 333 SIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSK 392
S+G+RVQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDF FYDRSAPIYTQPRYLPPSK
Sbjct: 333 SLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSK 391
Query: 393 MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 452
MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET ++ L+
Sbjct: 392 MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLS 451
Query: 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 512
AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKD
Sbjct: 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKD 511
Query: 513 ALIPSGTII 521
ALIP+GT+I
Sbjct: 512 ALIPTGTVI 520
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2198 (778.8 bits), Expect = 8.9e-228, P = 8.9e-228
Identities = 418/471 (88%), Positives = 451/471 (95%)
Query: 51 SKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKR 110
S + + RR RRP+V SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKR
Sbjct: 47 SSSSSAGRR--RRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKR 104
Query: 111 AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170
AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY +N+GGYKNEGF
Sbjct: 105 AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGF 164
Query: 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRE 230
VEVLAAQQSP+NPNWFQGTADAVRQYLWLFEEHNV+EFL+LAGDHLYRMDYE+FIQAHRE
Sbjct: 165 VEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRE 224
Query: 231 TDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERA 290
TD+DITVAALPMDEKRATAFGLMKIDEEGRI+EF+EKPKGEQLKAM VDTTILGLDD RA
Sbjct: 225 TDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRA 284
Query: 291 KEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI 350
KEMPYIASMGIYVISK+VML LLR++FPGANDFGSEVIPGAT+IGMRVQAYLYDGYWEDI
Sbjct: 285 KEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDI 344
Query: 351 GTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK 410
GTIEAFYNANLGITKKP+PDF FYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIK
Sbjct: 345 GTIEAFYNANLGITKKPVPDFS-FYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIK 403
Query: 411 NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRA 470
NCKIHHSVVGLRSCISEGAIIED+LLMGADYYET+AD++ L KG +PIGIGKN HI+RA
Sbjct: 404 NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRA 463
Query: 471 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521
IIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 464 IIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
|
|
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
Identities = 267/495 (53%), Positives = 367/495 (74%)
Query: 38 AFSSSQLSGDKIFSKAVTGDR-RSE----RRPIVVSPQAVS-DSKNSQTCLDPEASRSVL 91
+F + +L G K+ + R RS ++ I++S +V+ +SK + + R+V
Sbjct: 32 SFCNGELMGKKLNLSQLPNIRLRSSTNFSQKRILMSLNSVAGESKVQELETEKRDPRTVA 91
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IILGGGAGTRL+PLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+NSASLN
Sbjct: 92 SIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 151
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVL 206
RHL+RAY SN G+ +G+VEVLAA Q+P WFQGTADAVRQ+ WLFE+ ++
Sbjct: 152 RHLARAYNSNGLGF-GDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIE 210
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
+ L+L+GDHLYRMDY FIQ HR++ ADI+++ +P+D++RA+ FGLMKID++GR+I FSE
Sbjct: 211 DVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSE 270
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326
KPKG+ LKAM VDTTILGL E A++ PYIASMG+YV K+++LNLLR +FP ANDFGSE
Sbjct: 271 KPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSE 330
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR 386
+IP + V AYL++ YWEDIGTI +F+ ANL +T+ P F FYD + PIYT R
Sbjct: 331 IIPFSAK-EFYVNAYLFNDYWEDIGTIRSFFEANLALTEHP-GAFS-FYDAAKPIYTSRR 387
Query: 387 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 446
LPPSK+ ++ + DS+I G + NC I HS+VG+RS + ++DT+++GADYYET+A
Sbjct: 388 NLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEA 447
Query: 447 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 506
+ L A+G+VPIGIG+N+ I+ IIDKNAR+G NV I NS+ +QEA R +DG++I+SGI
Sbjct: 448 EVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGI 507
Query: 507 VTIIKDALIPSGTII 521
I+K+++I G +I
Sbjct: 508 TVILKNSVIKDGVVI 522
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
Identities = 248/436 (56%), Positives = 330/436 (75%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
++V IILGGGAGTRL+PLT KRAKPAVP+G YRLIDIP+SNC+NS I KI++LTQFNS
Sbjct: 83 KNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNS 142
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPN--WFQGTADAVRQYLWLFEE--- 202
SLNRHLSR Y G +GFVEVLAA Q+ + WFQGTADAVRQ++W+FE+
Sbjct: 143 FSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKT 202
Query: 203 HNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRII 262
NV L+L+GDHLYRMDY F+Q H E++ADITV+ LPMDE RA+ FGL+KID+ G+II
Sbjct: 203 KNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQSGKII 262
Query: 263 EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322
+FSEKPKG+ LKAM+VDT+ILGL + A E PYIASMG+YV K+V+L LLR +P +ND
Sbjct: 263 QFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSND 322
Query: 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIY 382
FGSE+IP A VQA+L++ YWEDIGTI +F++ANL +T++P P F+ FYD+ P +
Sbjct: 323 FGSEIIPLAVG-EHNVQAFLFNDYWEDIGTIGSFFDANLALTEQP-PKFQ-FYDQKTPFF 379
Query: 383 TQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYY 442
T PR+LPP+K+ + DS++ GC ++ C + HS+VG+RS + G ++DT++MGAD+Y
Sbjct: 380 TSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFY 439
Query: 443 ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI 502
+T+A+ L A+G VP+G+G+N+ IK IIDKNA+IG NV I N+D V+E R +G+ I
Sbjct: 440 QTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHI 499
Query: 503 KSGIVTIIKDALIPSG 518
+SGI ++K+A I G
Sbjct: 500 RSGITVVLKNATIRDG 515
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 236/445 (53%), Positives = 317/445 (71%)
Query: 82 LDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 141
+DP+ +V IILGGG G +L+PLT + A PAVP+G YRLIDIP+SNC+NS I+KI+V
Sbjct: 86 VDPQ---NVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFV 142
Query: 142 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 199
LTQFNSASLNRHL+R Y N G GFVEVLAA Q+P WFQGTADAVR++LW+
Sbjct: 143 LTQFNSASLNRHLARTYFGN-GINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWV 201
Query: 200 FEE---HNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKID 256
FE+ N+ L+L+GDHLYRM+Y F+Q+H +++ADIT++ P+ E RA+ FGL+KID
Sbjct: 202 FEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKID 261
Query: 257 EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316
GR+I FSEKP G LK+M+ DTT+LGL + A + PYIASMG+Y + +LNLL +
Sbjct: 262 RGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQ 321
Query: 317 FPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYD 376
+P +NDFGSEVIP A VQ Y++ YWEDIGTI+ FY ANL + ++ P F FYD
Sbjct: 322 YPSSNDFGSEVIPAAIR-DHDVQGYIFRDYWEDIGTIKTFYEANLALVEER-PKFE-FYD 378
Query: 377 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 436
P YT PR+LPP+K + DS+I GC ++ C + S++G RS + G ++DTL+
Sbjct: 379 PETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLM 438
Query: 437 MGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARE 496
+GADYY+T+++ L A+G VPIGIGK++ I++ IIDKNA+IG NV I+N VQEA R
Sbjct: 439 LGADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRP 498
Query: 497 TDGYFIKSGIVTIIKDALIPSGTII 521
+G++I+SGI I++ A I GT+I
Sbjct: 499 EEGFYIRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 241/501 (48%), Positives = 340/501 (67%)
Query: 39 FSSSQLSGD--KIFSKAVTGDRRSER--RPIVVSPQAVSDSKNSQTCLDPEAS------- 87
F ++ G K FS ++ + R RP V A++ SKN++ L + S
Sbjct: 27 FLGEKIKGSVLKPFSSDLSSKKFRNRKLRPGVA--YAIATSKNAKEALKNQPSMFERRRA 84
Query: 88 --RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
++V IILGGG G +L+PLTK+ A PAVP+G YR+IDIP+SNC+NS I+KI+VLTQF
Sbjct: 85 DPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLTQF 144
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE- 202
NSASLNRHL+R Y N G +GFVEVLAA Q+P WFQGTADAVR++LW+FE+
Sbjct: 145 NSASLNRHLARTYFGN-GINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFEDA 203
Query: 203 --HNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR 260
N+ ++L+GDHLYRM+Y F+Q H ++ ADIT++ P+DE RA+ +GL+ ID GR
Sbjct: 204 KNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRSGR 263
Query: 261 IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320
++ FSEKP G LK+M+ DTT+ GL + A + PYIASMG+Y + +L LL ++P +
Sbjct: 264 VVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYPSS 323
Query: 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAP 380
NDFGSE+IP A VQ Y+Y YWEDIGTI++FY AN+ + ++ P F FYD++ P
Sbjct: 324 NDFGSEIIPAAIK-DHNVQGYIYRDYWEDIGTIKSFYEANIALVEEH-PKFE-FYDQNTP 380
Query: 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGAD 440
YT PR+LPP+K + +SVI GC + C I S++G RS + G ++DTL++GAD
Sbjct: 381 FYTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGAD 440
Query: 441 YYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGY 500
Y+T+++ L A+G+VPIGIG+++ I++ IIDKNA+IG NV I+N D V+EA R +G+
Sbjct: 441 SYQTESEIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGF 500
Query: 501 FIKSGIVTIIKDALIPSGTII 521
+I+SGI +++ A I GT+I
Sbjct: 501 YIRSGITVVVEKATIKDGTVI 521
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 212/437 (48%), Positives = 296/437 (67%)
Query: 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146
++SV I+ GGG+ + LYPLTK R+K A+P+ ANYRLID +SNC+NS I+KIY +TQFN
Sbjct: 52 NQSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFN 111
Query: 147 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL 206
S SLN HLS+AY S G K+ FVEV+AA QS E+ WFQGTADA+R+ LW+FEE V
Sbjct: 112 STSLNSHLSKAY-SGFGLGKDR-FVEVIAAYQSLEDQGWFQGTADAIRRCLWVFEEFPVT 169
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
EFLVL G HLY+MDY+ I+ HR + ADIT+ L FG M++D + F+
Sbjct: 170 EFLVLPGHHLYKMDYKMLIEDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNAVTRFTI 229
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326
K G+Q + T D + +P S GIYVI ++ M+ LLR+ + D SE
Sbjct: 230 K--GQQDLISVANRTATRSDGTSSCSVP---SAGIYVIGREQMVKLLRECLIKSKDLASE 284
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR 386
+IPGA S GM+V+A+++DGYWED+ +I A+Y AN+ + I +R FYDR P+YT PR
Sbjct: 285 IIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANM----ESIKSYR-FYDRQCPLYTMPR 339
Query: 387 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 446
LPPS M A +T+S+IG+GC++ C I SVVG+R+ I++ I+ED++++G+D YE +
Sbjct: 340 CLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIYEMEE 399
Query: 447 D--RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 504
D R+ K + IGIG+ S I+RAI+DKNARIG NV I+N D+V+E RE GY I+
Sbjct: 400 DVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQGYVIRE 459
Query: 505 GIVTIIKDALIPSGTII 521
GI+ I+++A+IP+ +I+
Sbjct: 460 GIIIILRNAVIPNDSIL 476
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 125/367 (34%), Positives = 198/367 (53%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ L +IL GG G+RL PLT RAKPAVP G YR+ID ++NCL+S + +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SL++HL + S E F+ V+ Q + W++GTADA+ +WL +
Sbjct: 62 HSLHKHLRNGW-SIFNPELGE-FITVVPPQMR-KGGKWYEGTADALFHNMWLLARSDAKY 118
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+VL+GDH+YRMDY ++ H +A +T+A + + A+AFG+M ID++ RI F EK
Sbjct: 119 VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCFVEK 178
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFG 324
P + D ++ ASMGIY+ + DV+ L + ++DFG
Sbjct: 179 PADPPCIPNRPDHSL--------------ASMGIYIFNMDVLKKALTEDAEIEQSSHDFG 224
Query: 325 SEVIPGATSIGMRVQAYLY---------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFY 375
+VIP + G V AY + D YW D+GTI++FY+AN+ + + P+P Y
Sbjct: 225 KDVIPKLIATGS-VFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQ-PVPPMN-LY 281
Query: 376 DRSAPIYTQPRYLPPSKMLDADV------TDSVIGEGCVIKNCKIHHSVVGLRSCISEGA 429
++ I T + PP++ + + +S+I G + + HS++ I++ A
Sbjct: 282 QKNWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSA 341
Query: 430 IIEDTLL 436
+I D++L
Sbjct: 342 LIVDSIL 348
|
|
| TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 125/367 (34%), Positives = 198/367 (53%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ L +IL GG G+RL PLT RAKPAVP G YR+ID ++NCL+S + +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SL++HL + S E F+ V+ Q + W++GTADA+ +WL +
Sbjct: 62 HSLHKHLRNGW-SIFNPELGE-FITVVPPQMR-KGGKWYEGTADALFHNMWLLARSDAKY 118
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+VL+GDH+YRMDY ++ H +A +T+A + + A+AFG+M ID++ RI F EK
Sbjct: 119 VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITCFVEK 178
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFG 324
P + D ++ ASMGIY+ + DV+ L + ++DFG
Sbjct: 179 PADPPCIPNRPDHSL--------------ASMGIYIFNMDVLKKALTEDAEIEQSSHDFG 224
Query: 325 SEVIPGATSIGMRVQAYLY---------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFY 375
+VIP + G V AY + D YW D+GTI++FY+AN+ + + P+P Y
Sbjct: 225 KDVIPKLIATGS-VFAYSFCSGKGRVARDCYWRDVGTIDSFYDANMDLLQ-PVPPMN-LY 281
Query: 376 DRSAPIYTQPRYLPPSKMLDADV------TDSVIGEGCVIKNCKIHHSVVGLRSCISEGA 429
++ I T + PP++ + + +S+I G + + HS++ I++ A
Sbjct: 282 QKNWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSA 341
Query: 430 IIEDTLL 436
+I D++L
Sbjct: 342 LIVDSIL 348
|
|
| UNIPROTKB|P0A6V1 glgC "GlgC" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 142/386 (36%), Positives = 210/386 (54%)
Query: 72 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNC 131
VS KN L + + +IL GG GTRL LT KRAKPAV G +R+ID +SNC
Sbjct: 2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNC 61
Query: 132 LNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191
+NS I ++ V+TQ+ S +L +H+ R + S NE FV++L AQQ + NW++GTAD
Sbjct: 62 INSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTAD 119
Query: 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251
AV Q L + + ++LAGDH+Y+ DY R + H E A TVA +P+ + A+AFG
Sbjct: 120 AVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFG 179
Query: 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN 311
+M +DE +IIEF EKP + ++ +K + ASMGIYV D +
Sbjct: 180 VMAVDENDKIIEFVEKPANPP-----------SMPNDPSKSL---ASMGIYVFDADYLYE 225
Query: 312 LL----RDKFPGANDFGSEVIPGATSIGMR---------VQAYL-YDGYWEDIGTIEAFY 357
LL RD+ ++DFG ++IP T G+ VQ+ + YW D+GT+EA++
Sbjct: 226 LLEEDDRDE-NSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRDVGTLEAYW 284
Query: 358 NANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DAD-----VTDSVIGEGCVIKN 411
ANL + +P+ YDR+ PI T LPP+K + D +S++ GCVI
Sbjct: 285 KANLDLASV-VPELD-MYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLVSGGCVISG 342
Query: 412 CKIHHSVVGLRSCISEGAIIEDTLLM 437
+ SV+ R ++ I+ +L+
Sbjct: 343 SVVVQSVLFSRVRVNSFCNIDSAVLL 368
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6520 | 0.8214 | 0.9976 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.6129 | 0.8253 | 0.9976 | yes | no |
| P55228 | GLGS_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8498 | 0.9884 | 0.9903 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.6437 | 0.7965 | 0.9673 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5019 | 0.9117 | 0.9152 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5827 | 0.8291 | 0.8944 | N/A | no |
| P52416 | GLGS1_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.9016 | 0.9117 | 0.9350 | N/A | no |
| P52417 | GLGS2_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.8822 | 0.9827 | 1.0 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.6497 | 0.8214 | 0.9749 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.6382 | 0.8214 | 0.9976 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.6543 | 0.8214 | 0.9976 | yes | no |
| Q42882 | GLGS_SOLLC | 2, ., 7, ., 7, ., 2, 7 | 0.8639 | 0.9865 | 0.9865 | N/A | no |
| Q9M462 | GLGS_BRANA | 2, ., 7, ., 7, ., 2, 7 | 0.8665 | 0.9769 | 0.9788 | N/A | no |
| P15280 | GLGS_ORYSJ | 2, ., 7, ., 7, ., 2, 7 | 0.9021 | 0.8809 | 0.8929 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.5056 | 0.8176 | 0.8160 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.5326 | 0.8618 | 0.8601 | N/A | no |
| P55232 | GLGS_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.9018 | 0.8886 | 0.9468 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5990 | 0.8214 | 0.9976 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.6313 | 0.8234 | 0.9976 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5353 | 0.8253 | 0.9148 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.5079 | 0.8176 | 0.8145 | N/A | no |
| P55238 | GLGS_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.9008 | 0.8886 | 0.9025 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6405 | 0.8214 | 0.9976 | yes | no |
| P30523 | GLGS_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.8948 | 0.8560 | 0.9429 | N/A | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.6543 | 0.8214 | 0.9976 | yes | no |
| P23509 | GLGS_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8735 | 0.9865 | 0.9865 | N/A | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.6129 | 0.8214 | 0.9976 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.6313 | 0.8234 | 0.9976 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 521 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-167 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-152 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-115 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-115 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 1e-94 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-86 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 6e-79 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 4e-42 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 2e-38 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 2e-32 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 2e-32 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 1e-22 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 2e-22 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 7e-17 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 1e-15 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 4e-15 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 1e-14 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 6e-13 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 2e-11 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 7e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 8e-09 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 8e-09 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 3e-08 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 6e-08 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 5e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 1e-06 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 2e-06 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 2e-06 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 3e-06 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 7e-06 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 3e-05 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 5e-05 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 2e-04 | |
| COG1213 | 239 | COG1213, COG1213, Predicted sugar nucleotidyltrans | 2e-04 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 3e-04 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-04 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 6e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.002 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.002 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 0.002 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 0.003 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 0.003 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 851 bits (2200), Expect = 0.0
Identities = 303/438 (69%), Positives = 356/438 (81%), Gaps = 5/438 (1%)
Query: 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146
+SV IILGGGAGTRL+PLTK+RAKPAVP+G NYRLIDIP+SNC+NS I+KIYVLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 147 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--- 203
SASLNRHLSRAY GG +GFVEVLAA Q+P WFQGTADAVRQ+LWLFE+
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNK 120
Query: 204 NVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIE 263
NV E L+L+GDHLYRMDY F+Q HRE+ ADIT+A LP+DE RA+ FGLMKID+ GRIIE
Sbjct: 121 NVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIE 180
Query: 264 FSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323
FSEKPKG++LKAM+VDTT+LGL E AKE PYIASMGIYV KDV+L LLR +FP ANDF
Sbjct: 181 FSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240
Query: 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYT 383
GSE+IPGA G VQAYL+DGYWEDIGTI++FY ANL +TK+P P F FYD APIYT
Sbjct: 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFS-FYDPDAPIYT 298
Query: 384 QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYE 443
PR+LPPSK+ D +TDS+I GC ++ CKI HSVVGLRS I EG IEDT++MGADYYE
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 444 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 503
T+ + L A+G VPIGIG+N+ I+ AIIDKNARIG NV I+N D VQEA RE +GY+I+
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 504 SGIVTIIKDALIPSGTII 521
SGIV I+K+A+IP GT+I
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 766 bits (1980), Expect = 0.0
Identities = 287/434 (66%), Positives = 352/434 (81%), Gaps = 6/434 (1%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ VL IILGGGAGTRLYPLTK RAKPAVPL YRLIDIP+SNC+NS I+KIYVLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
ASLNRH+S+ Y N G+ + GFVEVLAAQQ+PENP+WFQGTADAVR+YLW F+E +V E
Sbjct: 62 ASLNRHISQTY--NFDGF-SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDE 118
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+L+L+GD LYRMDY F+Q HRET ADIT+A LP+DEK A+ FGLMK D++GRI EFSEK
Sbjct: 119 YLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEK 178
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327
PKG++LKAM VDT+ LGL E AK PY+ASMGIYV S+DV+ +LL +K P DFG E+
Sbjct: 179 PKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLL-NKNPEYTDFGKEI 237
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRY 387
IP A +VQ+YL+DGYWEDIGTIEAFY ANL +T++P P F FYD APIYT+ RY
Sbjct: 238 IPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFS-FYDEKAPIYTRARY 295
Query: 388 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD 447
LPPSK+LDA +T+S+I EGC+IKNC IHHSV+G+RS I G IEDTL+MGAD+YE+ +
Sbjct: 296 LPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEE 355
Query: 448 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIV 507
R L +G P+GIG+ + IKRAIIDKNARIG+NV+IVN D+V+EA RE G++I+ GIV
Sbjct: 356 REELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIV 415
Query: 508 TIIKDALIPSGTII 521
++K+A+IP GT+I
Sbjct: 416 VVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 478 bits (1232), Expect = e-167
Identities = 176/401 (43%), Positives = 249/401 (62%), Gaps = 46/401 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
++L GG G+RL PLTK+RAKPAVP G YR+ID P+SNC+NS I +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
RH+ R + + G+ + GFV +L AQQ +W+QGTADAV Q L L E+++ L+L
Sbjct: 61 RHIQRGW--DFDGFID-GFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLIL 117
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP-KG 270
+GDH+Y+MDYE+ + H E+ AD+T+A +P+ K A+ FG+M++DE+GRI++F EKP
Sbjct: 118 SGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANP 177
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEV 327
+ M +ASMGIY+ KDV+ LL D ++DFG ++
Sbjct: 178 PSIPGM---------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDI 222
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRY 387
IP A G VQAYL+ GYW D+GTI++F+ AN+ + P F YDR PIYT +
Sbjct: 223 IPRALEEGS-VQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFD-LYDRKWPIYTYNEF 279
Query: 388 LPPSKMLDAD--VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETD 445
LPP+K +D+D V DS++ EGC+I + HSV+G+R I G+ +ED+++MG
Sbjct: 280 LPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD------ 333
Query: 446 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486
+GIG+ + I+ AIIDKN RIG+ V I N
Sbjct: 334 -------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 439 bits (1131), Expect = e-152
Identities = 160/438 (36%), Positives = 244/438 (55%), Gaps = 52/438 (11%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
++VL IIL GG G+RL PLTK RAKPAVP G YR+ID +SNC+NS I +I VLTQ+ S
Sbjct: 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKS 63
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SLN H+ R + ++ G V +L AQQ W++GTADA+ Q L + +
Sbjct: 64 HSLNDHIGRGWPWDLDRKN--GGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEY 121
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
L+L+GDH+Y+MDY + H E+ AD+TVA + + A+ FG+M +DE GRIIEF EK
Sbjct: 122 VLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEK 181
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFG 324
P ++ +ASMGIY+ + D++ LL ++DFG
Sbjct: 182 PADG----PPSNS---------------LASMGIYIFNTDLLKELLEEDAKDPNSSHDFG 222
Query: 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQ 384
++IP G V AY + GYW D+GTI+++Y AN+ + P+ YDR+ PIYT+
Sbjct: 223 KDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PEL-NLYDRNWPIYTK 279
Query: 385 PRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYE 443
+ LPP+K + D++V++S++ GC+I + +SV+ I +G++IE++++M
Sbjct: 280 NKNLPPAKFVNDSEVSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD---- 334
Query: 444 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 503
+ IG+ + ++RAIIDKN IG+ V I ++ R + +
Sbjct: 335 ---------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKR----FRSE 375
Query: 504 SGIVTIIKDALIPSGTII 521
GIV + K +I +
Sbjct: 376 EGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-115
Identities = 153/448 (34%), Positives = 241/448 (53%), Gaps = 64/448 (14%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
R L +IL GG G+RL LT KRAKPAV G +R+ID +SNC+NS I +I VLTQ+ +
Sbjct: 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKA 73
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SL RH+ R + S E FV++L AQQ + NW++GTADAV Q L + ++
Sbjct: 74 HSLIRHIQRGW-SFFREELGE-FVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKY 131
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
++LAGDH+Y+MDY R + H E+ AD TVA L + + A+AFG+M +DE RI F EK
Sbjct: 132 VVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEK 191
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD--KFPGAN-DFG 324
P + G D +++ +ASMGIYV + D + LL + + P ++ DFG
Sbjct: 192 PANP--------PAMPG-DPDKS-----LASMGIYVFNADYLYELLEEDAEDPNSSHDFG 237
Query: 325 SEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFRY 373
++IP G +V A+ + + YW D+GT++A++ ANL + P+
Sbjct: 238 KDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLA-SVTPELD- 294
Query: 374 FYDRSAPIYTQPRYLPPSK-MLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISE 427
YDR+ PI+T LPP+K + D +S++ GC+I + SV+ R ++
Sbjct: 295 LYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNS 354
Query: 428 GAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 487
+ +ED++L+ D + +G++ ++R +ID+ I + + I
Sbjct: 355 FSNVEDSVLL------PDVN-------------VGRSCRLRRCVIDRGCVIPEGMVI-GE 394
Query: 488 DSVQEAARETDGYFI-KSGIVTIIKDAL 514
D ++A R + + GIV + ++ L
Sbjct: 395 DPEEDAKR----FRRSEEGIVLVTREML 418
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 346 bits (889), Expect = e-115
Identities = 153/454 (33%), Positives = 232/454 (51%), Gaps = 72/454 (15%)
Query: 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
A VL I+L GG G RL PLT RAKPAVP G +YRLID +SN +NS +IYVLTQ+
Sbjct: 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQY 61
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNV 205
S SL+RH+S+ + + G ++ + AQQ W+ G+ADA+ Q L L E+ +
Sbjct: 62 KSHSLDRHISQTW--RLSGLLGN-YITPVPAQQR-LGKRWYLGSADAIYQSLNLIEDEDP 117
Query: 206 LEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFS 265
+V DH+YRMD + + H E+ A +TVAA+ + + A+AFG++++D +GRI F
Sbjct: 118 DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFL 177
Query: 266 EKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322
EKP D L D + A +ASMG YV + D +++ LR ++D
Sbjct: 178 EKPA---------DPPGLPDDPDEA-----LASMGNYVFTTDALVDALRRDAADEDSSHD 223
Query: 323 FGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPI 368
G ++IP G +AY+YD GYW D+GTI+A+Y+A++ +
Sbjct: 224 MGGDIIPRLVERG---RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLL-SVH 279
Query: 369 PDFRYFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRS 423
P F Y+R PIYT LPP+K +D DS++ G +I + +SV+
Sbjct: 280 PVFN-LYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNV 338
Query: 424 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 483
+ GA +ED++LM G IG+ + ++RAI+DKN +
Sbjct: 339 VVESGAEVEDSVLMD----------------GVR---IGRGAVVRRAILDKNVVVPPGAT 379
Query: 484 I-VNSDSVQEAARETDGYFI-KSGIVTIIKDALI 515
I V+ + + + + GIV + K +
Sbjct: 380 IGVD------LEEDRRRFTVSEGGIVVVPKGQRV 407
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 1e-94
Identities = 143/406 (35%), Positives = 218/406 (53%), Gaps = 55/406 (13%)
Query: 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 149
+L +IL GG GTRL LTK AKPAVP G YR+ID +SNC NS I + VLTQ+
Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLE 63
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL 209
LN H+ ++ N G V +L E W++GTA A+ Q + ++++ L
Sbjct: 64 LNNHIGIGSPWDLDR-INGG-VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVL 121
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAAL--PMDEKRATAFGLMKIDEEGRIIEFSEK 267
+L+GDH+Y+MDY++ + H+E +AD+T+A + P +E A+ FG+M DE RI+EF EK
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE--ASRFGIMNTDENMRIVEFEEK 179
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV----ISKDVMLNLLRDKFPGANDF 323
PK K+ ASMGIY+ K+ ++ ++ ++DF
Sbjct: 180 PK--NPKSNL-------------------ASMGIYIFNWKRLKEYLIEDEKNPNS-SHDF 217
Query: 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYT 383
G VIP G ++ AY + GYW+D+GTIE+ + AN+ + +P +DR+ IY+
Sbjct: 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELL-RPENPLN-LFDRNWRIYS 275
Query: 384 QPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYY 442
LPP + +A V +S++ EGCV+ + HSV+ + EG++++D+++M
Sbjct: 276 VNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGSVVKDSVIM----- 329
Query: 443 ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD 488
A IG+N I+RAII +NA IGD V I
Sbjct: 330 -PGAK-------------IGENVVIERAIIGENAVIGDGVIIGGGK 361
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 2e-86
Identities = 88/280 (31%), Positives = 126/280 (45%), Gaps = 39/280 (13%)
Query: 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK-IYVLTQFNSAS 149
IIL GG+GTRL+PLT+ AKP VP+ Y +I +S +N+ I + I + TQ +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL 209
+ L ++V A Q GTA AV + + L
Sbjct: 61 VAEQLGDGSKFG---------LQVTYALQPEPR-----GTAPAVALAADFLGDDDPELVL 106
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
VL GDH+YRMD+E +Q R AD TV + + T +G+++ DE GR+I F EKP
Sbjct: 107 VLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPD 166
Query: 270 GEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--NDFGSEV 327
+ ASMGIY + V L L + A D ++
Sbjct: 167 LPKA--------------------SNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDA 206
Query: 328 IPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365
IP A G A+L+ G YW D+GT ++ + ANL +
Sbjct: 207 IPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLT 246
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 6e-79
Identities = 95/260 (36%), Positives = 128/260 (49%), Gaps = 61/260 (23%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IIL GG GTRL PLTKKRAKPAVP G YRLID P+SN +NS I + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
HL ++ G + +L QQ +W++GTADA+ Q L E + L+L
Sbjct: 61 DHLGSGKEWDLDRKN--GGLFILPPQQRK-GGDWYRGTADAIYQNLDYIERSDPEYVLIL 117
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+GDH+Y MDY + H E+
Sbjct: 118 SGDHIYNMDYREMLDFHIES---------------------------------------- 137
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR-DKFPGANDFGSEVIPG 330
D T++ Y ASMGIY+ SKD+++ LL D G++DFG ++IP
Sbjct: 138 -----GADITVV-----------YKASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181
Query: 331 ATSIGMRVQAYLYDGYWEDI 350
+++ AY ++GYW DI
Sbjct: 182 MLK-KLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-42
Identities = 107/441 (24%), Positives = 174/441 (39%), Gaps = 98/441 (22%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG GTRL PLT R KP +P+ LI+ + + + +I ++
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIA-GKPLIEYVLEALAAAGVEEIVLVV-------- 54
Query: 152 RHLSRAYASNMGGYKNEGFVE-VLAAQQSPENPNWFQ-----GTADAVRQYLWLFEEHNV 205
GY E E + + GTA A++ L +
Sbjct: 55 ------------GYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNAL---DLLGG 99
Query: 206 LEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEF 264
+FLVL GD L +D ++ H++ A T+A + + FG+++ D+ GR++EF
Sbjct: 100 DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSE--FGVVETDDGDGRVVEF 157
Query: 265 SEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
EKP + + + GIY+ +V + DF
Sbjct: 158 REKPG-------------------PEEPPSNLINAGIYIFDPEV---FDYIEKGERFDFE 195
Query: 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQ 384
E++P + G V Y+++GYW DIGT E AN + + D +P+
Sbjct: 196 EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR---------GDGKSPLGPI 246
Query: 385 --PRYLPPSKMLDADVTDSVIGEGCVI-KNCKIH-HSVVGLRSCISEGAIIEDTLLMGAD 440
P + S + V VIG G I I ++V+G I G I+++++M
Sbjct: 247 EEPVVIIRSAYIIGPV---VIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIM--- 300
Query: 441 YYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGY 500
V IG S+I +II +N +IG ++ I D V E
Sbjct: 301 -------------DNVV---IGHGSYIGDSIIGENCKIGASLII--GDVVIGINSE---- 338
Query: 501 FIKSGIVTIIKDALIPSGTII 521
I G+V + +++ SG I
Sbjct: 339 -ILPGVV-VGPGSVVESGEIE 357
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-38
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 45/261 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G GTRL PLT R KP +P+ A +++ + + I +I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPI-AGKPILEYIIERLARAGIDEIILVVGYLGEQIE 59
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQ-YLWLFEEHNVLEFLV 210
+ N +V Q+ P GTA AVR +L ++ FLV
Sbjct: 60 EYFGDGSKFG----VNIEYVV----QEEPL------GTAGAVRNAEDFLGDDD----FLV 101
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
+ GD L +D ++ HRE AD T+A ++ + +G++++D++GR+ F EKP
Sbjct: 102 VNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDGRVTRFVEKPTL 159
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPG 330
+ +A+ GIY+ ++ L+ + + P D ++ IP
Sbjct: 160 PE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTDAIPL 197
Query: 331 ATSIGMRVQAYLYDGYWEDIG 351
+V Y DGYW DIG
Sbjct: 198 LIE-EGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-32
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 389 PPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADR 448
PP +V +S++ EGC+I + +SV+ + G+++ED+++M
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52
Query: 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 508
GIG+N+ I+RAIIDKN I D V I A Y + GIV
Sbjct: 53 -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVV 97
Query: 509 IIKDALI 515
+ K +I
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 97/419 (23%), Positives = 171/419 (40%), Gaps = 82/419 (19%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ II + L PLTK R ++P G YRLID P+SN +N+ I +++ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 148 -ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL 206
SL HL ++ ++ FV + + G R + L
Sbjct: 61 RQSLFDHLGSGREWDLHRKRDGLFV----FPYNDRDDLSEGG----KRYF------SQNL 106
Query: 207 EFL---------VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-D 256
EFL VL + +D + ++ H ET DITV + A+ + + D
Sbjct: 107 EFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFD 166
Query: 257 EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316
E G++ + E S+ IY++S D+++ LL +
Sbjct: 167 ESGKVK---------------------SIGQNLNPEEEENISLDIYIVSTDLLIELLYE- 204
Query: 317 FPGANDFG-----SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF 371
G E+I + + AY Y GY +I +++++Y AN+ + P
Sbjct: 205 ---CIQRGKLTSLEELIRENL-KELNINAYEYTGYLANINSVKSYYKANMDLLD---PQN 257
Query: 372 RY--FYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEG 428
FY PIYT+ + PP+ + + V +S++ GC+I K+ +S++ + +
Sbjct: 258 FQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKD 316
Query: 429 AIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 487
A+I++ ++M IG+ +H++ IIDK+ I NVKI +
Sbjct: 317 ALIKNCIIMQRTV-------------------IGEGAHLENVIIDKDVVIEPNVKIAGT 356
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 66/273 (24%), Positives = 105/273 (38%), Gaps = 58/273 (21%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL GG GTRL + K KP P+ A ++ + IS+I +
Sbjct: 2 VILAGGLGTRLRSVVKDLPKPLAPV-AGRPFLEYLLEYLARQGISRIVLSV--------- 51
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ------GTADAVRQYLWLFEEHNVL 206
GY E E ++ GT A++ L E
Sbjct: 52 -----------GYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQ-- 98
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
FLVL GD + +D + A R + AD T+A + + A+ +G + +D +GR+I F E
Sbjct: 99 -FLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE 155
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326
K G I G+Y++ K+++ + D F ++
Sbjct: 156 KGPGA--------------------APGLING-GVYLLRKEILAEIPADAF----SLEAD 190
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
V+P G R+ + DGY+ DIG E + A
Sbjct: 191 VLPALVKRG-RLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 57/272 (20%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN- 151
+I+ GG GTRL PLT+ KP + +G +++ + + Y+ S+N
Sbjct: 2 VIMAGGKGTRLRPLTENTPKPMLKVG-GKPILETIIDRFIAQGFRNFYI-------SVNY 53
Query: 152 -RHLSRAYASNMG--GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
+ Y + G E + P GTA A L L E F
Sbjct: 54 LAEMIEDYFGDGSKFGVNISYVRE--------DKP---LGTAGA----LSLLPEKPTDPF 98
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
LV+ GD L ++YE + H+E +AD TV + + +G+++ + GRI EKP
Sbjct: 99 LVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQ--VPYGVVETE-GGRITSIEEKP 155
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328
++ + GIYV+ +V+ + +++F D ++I
Sbjct: 156 -----------------------THSFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLI 192
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
G +V + YW DIG E + AN
Sbjct: 193 ----KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
G+IL GG+GTRL PLT+ K +P+ + +I P+ + + I I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPV-YDKPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLV 210
+ L +G + G A Q P+ G A AV + E+ +F++
Sbjct: 62 KEL-------LGDGSDFGVDITYAVQPEPD------GLAHAV----LIAEDFVGDDDFVL 104
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
GD++++ ++ E + T+ +D+ + +G+++ DE+G++I EKPK
Sbjct: 105 YLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDGKVIGLEEKPK 161
|
Length = 286 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 402 VIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 460
+IGE VI N I +SV+G I +G I +++LM
Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVT------------------- 41
Query: 461 IGKNSHIKRAIIDKNARIGDNVKIVNS 487
IG NS I +II NA IG+NV++VN
Sbjct: 42 IGANSVIVDSIIGDNAVIGENVRVVNL 68
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 47/274 (17%)
Query: 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 149
+ G+IL GG GTRL PLT R K +P+ A +I + + + I I ++
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV-AGKPIIQYAIEDLREAGIEDIGIVVGPTGEE 59
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV-RQYLWLFEEHNVLEF 208
+ L + ++ Q+ P G A AV +L +E F
Sbjct: 60 IKEALGDGSRFGV----RITYIL----QEEP------LGLAHAVLAARDFLGDE----PF 101
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
+V GD+L + ++ E DAD ++ +++ R FG+ +D +GRI+ EKP
Sbjct: 102 VVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPR--RFGVAVVD-DGRIVRLVEKP 158
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM--LNLLRDKFPGANDFGSE 326
K + +A +G+Y + + ++ L+ + G + ++
Sbjct: 159 K---------------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TD 196
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
I G RV + G+W+D GT E AN
Sbjct: 197 AIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 87/393 (22%), Positives = 161/393 (40%), Gaps = 69/393 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G GTRL PLT R K +P+ AN ++ + + + I+ I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPV-ANKPILQYAIEDLAEAGITDIGIV-------VG 53
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV-RQYLWLFEEHNVLEFLV 210
+G + G Q P G A AV +L ++ +F+V
Sbjct: 54 PVTGEEIKEIVGEGERFGAKITYIVQGEP------LGLAHAVYTARDFLGDD----DFVV 103
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
GD+L + RF+++ E D D + + + TAFG+ +++ RI++ EKPK
Sbjct: 104 YLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLEDGKRILKLVEKPK- 160
Query: 271 EQLKAMKVDTTILGLDDERAKEMPY-IASMGIYVISKDVMLNLLRDKFPGA-NDFG-SEV 327
E P +A +G+Y+ + ++ +++ P + ++
Sbjct: 161 ---------------------EPPSNLAVVGLYMF-RPLIFEAIKNIKPSWRGELEITDA 198
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRY 387
I G +V G+W+D G E +AN I + + + D S I +
Sbjct: 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESK-IRGRVVV 257
Query: 388 LPPSKMLDADVTD-SVIGEGCVIKNCKI-HHSVVGLRSCISEGAIIEDTLLMGADYYETD 445
+K++++ + +VIGE C+I+N I ++ +G I A +E ++++
Sbjct: 258 GEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVI-RDAEVEHSIVL-------- 308
Query: 446 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478
SV G+ I ++I K RI
Sbjct: 309 --------DESVIEGVQA--RIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 95/402 (23%), Positives = 156/402 (38%), Gaps = 110/402 (27%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+ PLT+ R KP +P+ A L++ + ++ I + + +
Sbjct: 4 VILAAGKGTRMRPLTETRPKPMLPV-AGKPLLEHIIEALRDAGIDDFVFVVGYGKEKVRE 62
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLA 212
+ G + G V + Q + GTADA+ +E+ EFLVL
Sbjct: 63 YF---------GDGSRGGVPIEYVVQEEQ-----LGTADALGSA----KEYVDDEFLVLN 104
Query: 213 GDHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
GD L ER I+A A + V + +G+++ D GR+ EKP
Sbjct: 105 GDVLLDSDLLERLIRAEAPAIAVVEV-------DDPSDYGVVETD-GGRVTGIVEKP--- 153
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-SEVIPG 330
++ + + + GIY+ S ++ L + K ++ ++ +
Sbjct: 154 --------------ENPPSN----LINAGIYLFSPEIFELLEKTKLSPRGEYELTDALQL 195
Query: 331 ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPP 390
G +V+A DG+W D+G +P +D L
Sbjct: 196 LIDEG-KVKAVELDGFWLDVG--------------RP-------WD----------LLDA 223
Query: 391 SKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 450
++ L ++ + G V +N I VV I EGA+I G Y E
Sbjct: 224 NEALLDNLEPRIEGT--VEENVTIKGPVV-----IGEGAVIRS----GT-YIE------- 264
Query: 451 LAAKGSVPIG----IGKNSHIKRA-IIDKNARIGDNVKIVNS 487
G V IG IG N++I+ +I N IG+ V+I NS
Sbjct: 265 ----GPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNS 302
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 62/274 (22%), Positives = 91/274 (33%), Gaps = 70/274 (25%)
Query: 94 ILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRH 153
IL G GTR+ PLT R KP VP+ A LID + + I +I V N H
Sbjct: 4 ILAAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAAGIRRIVV---------NTH 53
Query: 154 LSRAYASNMGGYKNEGFVEVLAAQQ-------SPENPNWFQGTADAVRQYLWLFEEHNVL 206
+ + L + S E T +++ L L +
Sbjct: 54 -----------HLADQIEAHLGDSRFGLRITISDEPDE-LLETGGGIKKALPLLGDEP-- 99
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPM----DEKRATAFGLMKIDEEGRII 262
FLV+ GD L+ D + H D + LP+ F L D +GR+
Sbjct: 100 -FLVVNGDILWDGDLAPLLLLHAW-RMDALLLLLPLVRNPGHNGVGDFSL---DADGRLR 154
Query: 263 EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322
P+ + GI ++S ++ + KF N
Sbjct: 155 RGGGGAVA-----------------------PFTFT-GIQILSPELFAGIPPGKFS-LNP 189
Query: 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF 356
I R+ +YDG W D+GT E
Sbjct: 190 LWDRAIAAG-----RLFGLVYDGLWFDVGTPERL 218
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 35/207 (16%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG G+RLYPLT K +P+ N +I P+ + + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVA-NKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
R++ N K + + + GTAD++R ++ +FLVL
Sbjct: 62 STYLRSFPLN---LKQKLDEVTIVLDED-------MGTADSLRHIRKKIKK----DFLVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ D + + + HR DA +TV + S + KG
Sbjct: 108 SCDLITDLPLIELVDLHRSHDASLTVL---LYPPP-----------------VSSEQKGG 147
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIAS 298
+ K+ K D + DE+ + + +I S
Sbjct: 148 KGKSKKADERDVIGLDEKTQRLLFITS 174
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYPLTK +K +P+ + +I P+S + + I +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPVY-DKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE----HNVLE 207
L + +G + G A Q P G A A + EE V
Sbjct: 56 EDLPL-FKELLGDGSDLGIRITYAVQPKPG------GLAQA----FIIGEEFIGDDPVC- 103
Query: 208 FLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
L+L GD+++ +Q TV +++ +G+++ DE GR++ E
Sbjct: 104 -LIL-GDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENGRVLSIEE 159
Query: 267 KPK 269
KPK
Sbjct: 160 KPK 162
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-09
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 460
IGEG I +V+ I + I ++GA P
Sbjct: 1 VFIGEGVKIH----PKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------EKNPTI 46
Query: 461 IGKNSHIK-RAIIDKNARIGDNVKI 484
IG N I A+I +IGDN I
Sbjct: 47 IGDNVEIGANAVIHGGVKIGDNAVI 71
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 50/268 (18%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL GG GTRL PLT KP V N +I+ + + + +I + + +
Sbjct: 4 LILVGGYGTRLRPLTLTVPKPLVEF-CNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVP 62
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH---NVLEFL 209
L + Y +G +++ + ++ GTA + L + + F
Sbjct: 63 FL-KEYEKKLG-------IKITFSIETEP-----LGTAGPLA----LARDLLGDDDEPFF 105
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFSEKP 268
VL D + + H++ A+ T+ +++ + +G++ DE GRI F EKP
Sbjct: 106 VLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTGRIERFVEKP 163
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328
K K++ GIY+++ V L+ + + E+
Sbjct: 164 K--VFVGNKINA-------------------GIYILNPSV-LDRIPLRP---TSIEKEIF 198
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAF 356
P S G ++ AY G+W DIG + F
Sbjct: 199 PKMASEG-QLYAYELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
++L G G+R PLT K +P+ AN LID + + + +++V+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPV-ANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
HL ++ S+ K V +S G A +R L FL+L
Sbjct: 62 EHLLKSKWSS-LSSKMIVDVITSDLCES-------AGDALRLRDIRGLIRSD----FLLL 109
Query: 212 AGDHLYRMDY----ERFIQAHRETDADITV 237
+ D + + E + + A +TV
Sbjct: 110 SCDLVSNIPLSELLEERRKKDKNAIATLTV 139
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 117/500 (23%), Positives = 178/500 (35%), Gaps = 136/500 (27%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
S+ +IL G GTR+ K P V P+ A +++ + I V+
Sbjct: 1 MSLSAVILAAGKGTRM-----KSDLPKVLHPV-AGKPMLEHVIDAARALGPDDIVVVV-- 52
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWF-----QGTADAVRQYLWLF 200
G+ E +V A ++ + GT AV Q L
Sbjct: 53 ------------------GHGAE---QVREALAERDDVEFVLQEEQLGTGHAVLQALPAL 91
Query: 201 EEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 258
+ + LVL GD L + E + AH A TV L + T +G + D
Sbjct: 92 ADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATV--LTAELDDPTGYGRIVRDGN 149
Query: 259 G---RIIEFSEKPKGEQLKAMK-VDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314
G I+E EK E+ K +K ++T GIY +L L
Sbjct: 150 GEVTAIVE--EKDASEEEKQIKEINT-------------------GIYAFDGAALLRAL- 187
Query: 315 DKFPGANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL- 361
K N G ++VI A + G +V+A D E +G E +
Sbjct: 188 PKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247
Query: 362 ------GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT---DSVIGEGCVIKNC 412
G+T + D Y R + + P+ +L+ + + VIG G VIK+
Sbjct: 248 EKLMLAGVT---LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 413 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI----- 467
I + V + EG+ + + +G + A R G+V +G + HI
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGP-F----ARLR----PGAV---LGADVHIGNFVE 352
Query: 468 -KRAIIDK-----------NARIGDNVKI------VNSDSVQEAARET---DGYFIKSGI 506
K+A I K +A IG+NV I N D + +T D FI S
Sbjct: 353 VKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNK--FKTIIGDNVFIGSNS 410
Query: 507 -----VTIIKDALIPSGTII 521
VTI A I +G+ I
Sbjct: 411 QLVAPVTIGDGATIAAGSTI 430
|
Length = 460 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 62/279 (22%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
IIL G G+RL PLT+ R K + + L++ + + I I ++T
Sbjct: 2 IILAAGRGSRLRPLTEDRPKCLLEIN-GKPLLERQIETLKEAGIDDIVIVT--------- 51
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPE---NPNWFQ-GTADAVRQY-LWLFEEHNVLE 207
GYK E E+L + + NP++ + Y L+L + +
Sbjct: 52 -----------GYKKEQIEELLKKYPNIKFVYNPDYAETNNI-----YSLYLARDFLDED 95
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
FL+L GD ++ ++ + AD + K E + K
Sbjct: 96 FLLLEGDVVFD---PSILERLLSSPADNAILVDK------------KTKEW---EDEYVK 137
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK---DVMLNLLR--DKFPGAND 322
+ + + + L++ + + +GI S D + L + N
Sbjct: 138 DLDDAGVLLGIISKAKNLEEIQGE------YVGISKFSPEDADRLAEALEELIEAGRVNL 191
Query: 323 FGSEVIPG-ATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
+ + + + G++V+ DG+W +I +E A
Sbjct: 192 YYEDALQRLISEEGVKVKDI-SDGFWYEIDDLEDLERAE 229
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 400 DSVIGEGCVIK-NCKIHH-SVVGLRSCISEGAIIEDTLLMGAD--YYETDADRRF-LAAK 454
VIG+ CVI N I+ ++G R I GA+I G+D + D +
Sbjct: 37 GVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI------GSDGFGFAPDGGGWVKIPQL 90
Query: 455 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 486
G V IG IG N+ I R + + IGD KI N
Sbjct: 91 GGVIIGDDVEIGANTTIDRGALG-DTVIGDGTKIDN 125
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 41/131 (31%), Positives = 53/131 (40%), Gaps = 29/131 (22%)
Query: 400 DSVIGEGCVI-KNCKI-HHSVVGLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 454
+ IG+G VI N I H+ V+G I GA+I GAD Y T +
Sbjct: 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI------GADGFGYAGTAIGWVKIPQI 200
Query: 455 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 510
G V IG IG N+ I R +D + IG+ VKI N VQ V I
Sbjct: 201 GRVIIGDDVEIGANTTIDRGALD-DTVIGEGVKIDN--LVQIGHN-----------VRIG 246
Query: 511 KDALIPSGTII 521
+ +I I
Sbjct: 247 EHCIIAGQVGI 257
|
Length = 338 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 107/422 (25%), Positives = 160/422 (37%), Gaps = 100/422 (23%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL 150
+IL G GTR+ K P V PL A +++ + KI+V+ + +
Sbjct: 4 VILAAGKGTRM-----KSDLPKVLHPL-AGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 151 NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLV 210
+ L N VL A+Q GT AV Q L + + LV
Sbjct: 58 RKAL-----------ANRDVNWVLQAEQ--------LGTGHAVLQALPFLPDDGDV--LV 96
Query: 211 LAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RIIEFS 265
L GD L + ER ++AHR+ + A LP T +G + + +G I+E
Sbjct: 97 LYGDVPLISAETLERLLEAHRQNGITLLTAKLP----DPTGYGRIIRENDGKVTAIVE-- 150
Query: 266 EKPKGEQLKAMK-VDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
+K + KA+K ++T G+YV + L K N G
Sbjct: 151 DKDANAEQKAIKEINT-------------------GVYVFDGAALKRWLP-KLSNNNAQG 190
Query: 325 ----SEVIPGATSIGMRVQAYLYDGYWEDIGT--------IEAFYNANL-------GITK 365
++VI A + G V+A D E +G +E + G+T
Sbjct: 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVT- 249
Query: 366 KPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT---DSVIGEGCVIKNCKIHHSVVGLR 422
+ D F R + + P+ +L+ V D VIG GCVIKN I +VV
Sbjct: 250 --LRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKA 307
Query: 423 SCISEGAIIEDTLLMGADYYETDADRRFLAAK-GSVPIGIGKNSHIKRAIIDKNARIGDN 481
+ EG+ I + +G F + GSV +G HI + KNARIG
Sbjct: 308 YSVLEGSEIGEGCDVGP----------FARLRPGSV---LGAGVHIGNFVETKNARIGKG 354
Query: 482 VK 483
K
Sbjct: 355 SK 356
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYP+T+ +K +P+ + +I P+S + + I I +++
Sbjct: 2 GIILAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFL 209
+ L +G G A Q SP D + Q + E+ L
Sbjct: 61 QQL-------LGDGSQWGVNLSYAVQPSP----------DGLAQAFIIGEDFIGGDPSAL 103
Query: 210 VLAGDHLYRMDYERFIQ--AHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
VL + Y D ++ A RE+ A + A D +R +G+++ D GR I EK
Sbjct: 104 VLGDNIFYGHDLSDLLKRAAARESGATV-FAYQVSDPER---YGVVEFDSNGRAISIEEK 159
Query: 268 PK 269
P
Sbjct: 160 PA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-05
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 48/168 (28%)
Query: 388 LPPSKMLDADVT---DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 444
+ P +L+ D VIG CVIK+ I VV S + EGA+I + +G +
Sbjct: 24 IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGP-F--- 79
Query: 445 DADRRFLAAKGSVPIGIGKNSHI------KRAIIDKN-----------ARIGDNVKI--- 484
A R G+V +G+ HI K++ I + A IG+ V I
Sbjct: 80 -AHLRP----GTV---LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAG 131
Query: 485 ---VNSDSVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 521
N D V + T D FI S VTI A I +G+ I
Sbjct: 132 TITCNYDGVNK--HRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYP+T +K +P+ + +I P+S + + I I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE---HNVLEF 208
+ L +G G Q SP D + Q + EE +
Sbjct: 65 QQL-------LGDGSQWGLNLQYKVQPSP----------DGLAQAFIIGEEFIGGDDCA- 106
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
LVL + Y D + ++A ++ TV A +++ +G+++ D+ G I EKP
Sbjct: 107 LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQNGTAISLEEKP 164
|
Length = 292 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 461 IGKNSHIKRAIIDKNARIGDNVKIVNS----DSVQEAARETDGYFIKSGIVTIIKDALIP 516
IG+ + IK ++I +N +IG NV I NS D E + G I K IP
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-AVIGKGCTIP 66
Query: 517 SGTII 521
G++I
Sbjct: 67 PGSLI 71
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 44/207 (21%), Positives = 73/207 (35%), Gaps = 35/207 (16%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G G+RL P K V +G +I + N + I++ V+T
Sbjct: 6 AVILAAGFGSRLGP---DIPKALVEVG-GREIIYRTIENLAKAGITEFVVVT----NGYR 57
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
L + K F + E N L L +++ F+++
Sbjct: 58 ADLVEEF------LKKYPFNAKIVINSDYEKTNTGYS--------LLLAKDYMDGRFILV 103
Query: 212 AGDHLYRMD-YERFIQAHRETD-ADITVAALPMDEKRATAFGLMKI-DEEGRIIEFS--- 265
DH+Y ER ++A E D + ++E K+ DE GRI+E
Sbjct: 104 MSDHVYEPSILERLLEAPGEGLIVDRRPRYVGVEEA-------TKVKDEGGRIVEIGKDL 156
Query: 266 EKPKGEQLKAMKVDTTILGLDDERAKE 292
+ GE + + +I E E
Sbjct: 157 TEYDGEDIGIFILSDSIFEDTYELLVE 183
|
Length = 239 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 55/281 (19%)
Query: 92 GIILGGGA--GTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSA 148
+IL GG GTR PL+ KP P+ A +I + C ++ ++ ++ + +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV-AGKPMIHHHIEACAKVPDLKEVLLIGFYPES 59
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
+ +S A + E V + Q+ P GTA + + N F
Sbjct: 60 VFSDFISDA--------QQEFNVPIRYLQE--YKP---LGTAGGLYHFRDQILAGNPSAF 106
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFSEK 267
VL D + ++ H++ A T+ ++A+ +G + D G ++ + EK
Sbjct: 107 FVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEK 166
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM------LNLLRDKFPGAN 321
P+ V I + G+Y+ S ++ + + +
Sbjct: 167 PET------FVSDLI---------------NCGVYLFSPEIFDTIKKAFQSRQQEAQLGD 205
Query: 322 DFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGT 352
D E + V Y D +W I T
Sbjct: 206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKT 246
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 56/292 (19%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+I G GTR P TK K +P+ + +I V + + I I ++T ++
Sbjct: 4 VIPAAGLGTRFLPATKAIPKEMLPIV-DKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIED 62
Query: 153 HLSRAYA-SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL----- 206
H R+Y + +G ++L + + VRQ L H VL
Sbjct: 63 HFDRSYELEET--LEKKGKTDLLEEVRIISDL----ANIHYVRQKEPLGLGHAVLCAKPF 116
Query: 207 ----EFLVLAGDHLYRMDYE----RFIQAHRETDADITVAALPMDEKRATAFGLMKIDE- 257
F VL GD L E + I+A+ +T A + +A + + + +G++K ++
Sbjct: 117 IGDEPFAVLLGDDLI-DSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKI 174
Query: 258 EGRIIE---FSEKPKGEQLKAMKVDTTILGLDDERAKEMPY-IASMGIYVISKDVMLNLL 313
+G + + EKPK +E P +A +G YV++ D+ ++L
Sbjct: 175 DGDVFKVKGLVEKPK--------------------PEEAPSNLAIVGRYVLTPDIF-DIL 213
Query: 314 RDKFPGANDFGSEV-IPGATSIGMR---VQAYLYDGYWEDIGTIEAFYNANL 361
+ PG G E+ + A + + V AY+++G D G + A +
Sbjct: 214 ENTKPGK---GGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATV 262
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251
VR+YL + F++ GD + ++ I+ HR TV A+ FG
Sbjct: 110 RVRRYL-----GDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPGRFG 160
Query: 252 LMKIDEEGRIIEFSEKPKGE 271
+ +D++G++ F+EKP+G+
Sbjct: 161 ELDLDDDGQVTSFTEKPQGD 180
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 24/86 (27%)
Query: 399 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 458
+ IGEG IKN SV+G I + +I+++ Y D
Sbjct: 4 RGTSIGEGTTIKN-----SVIGRNCKIGKNVVIDNS------YIWDDVT----------- 41
Query: 459 IGIGKNSHIKRAIIDKNARIGDNVKI 484
I I +I+ A IG I
Sbjct: 42 --IEDGCTIHHSIVADGAVIGKGCTI 65
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 398 VTDSVIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 456
+ +SVIG C I KN I +S + I +G I +++ A G+
Sbjct: 14 IKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIV----------------ADGA 57
Query: 457 VPIGIGKNSHIK-RAIIDKNARIGD 480
V IGK I ++I IGD
Sbjct: 58 V---IGKGCTIPPGSLISFGVVIGD 79
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 63/233 (27%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+ K PL A +++ + +I V+
Sbjct: 2 VILAAGKGTRMK---SDLPKVLHPL-AGKPMLEHVLDAARALGPDRIVVVV--------- 48
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWF-----QGTADAVRQYLWLFEEHNVLE 207
G+ E + LA N + GT AV+Q L ++ +
Sbjct: 49 -----------GHGAEQVKKALAN----PNVEFVLQEEQLGTGHAVKQALPALKDFEG-D 92
Query: 208 FLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RII 262
LVL GD L + +R ++AHRE AD+TV ++ T +G + D G RI+
Sbjct: 93 VLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTGYGRIIRDGNGKVLRIV 150
Query: 263 EFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLR 314
E EK D T ++E+A +E + GIY + + L
Sbjct: 151 E--EK-----------DAT----EEEKAIRE----VNAGIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 400 DSVIGEGCVI-KNCKIHHSVV-GLRSCISEGAIIEDTLLMGAD--YYETDADRRFLAAK- 454
D VIG+G I N I+ V G I GA+I G+D Y A+ +
Sbjct: 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI------GSDGFGYAHTANGGHVKIPQ 192
Query: 455 -GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 486
G V I IG N+ I R D + IG+ KI N
Sbjct: 193 IGRVIIEDDVEIGANTTIDRGAFD-DTIIGEGTKIDN 228
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 33/151 (21%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
G+IL GG +R+ K +PLG L++ + L ++ V N
Sbjct: 1 GVILAGGRSSRM-----GGDKALLPLG-GKPLLERVLDR-LRPAGDEVVV-------VTN 46
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE-FLV 210
R A + +G V V+ +P+ QG + + LV
Sbjct: 47 RPEIAAALAGLG-------VPVV------PDPDPGQGPLAGLAA---GLRAAPDADAVLV 90
Query: 211 LAGD--HLYRMDYERFIQAHRETDADITVAA 239
LA D L R + A + ADI V
Sbjct: 91 LACDMPFLTPDLLRRLLAALEASGADIAVPV 121
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.98 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.98 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.96 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.93 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.9 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.88 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.86 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.84 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.77 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.74 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.7 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.69 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.68 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.67 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.67 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.61 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.58 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.58 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.57 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.56 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.54 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.53 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.52 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.49 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.48 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.48 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.48 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.48 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.47 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.47 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.47 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.46 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.46 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.45 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.43 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.42 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.42 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.4 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.39 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.39 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.38 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.37 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.34 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.33 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.33 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.32 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.31 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.3 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.3 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.29 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.28 | |
| PLN02296 | 269 | carbonate dehydratase | 99.28 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.27 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.26 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.25 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.24 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.24 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.23 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.22 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.22 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.22 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.2 | |
| PLN02472 | 246 | uncharacterized protein | 99.2 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.2 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.2 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.19 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.18 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.18 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.17 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.15 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.13 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.12 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.12 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.11 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.1 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.08 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.08 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.07 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.07 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.06 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.06 | |
| PLN02296 | 269 | carbonate dehydratase | 99.05 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.04 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.04 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.04 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.04 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.04 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.03 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.03 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.02 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.02 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.02 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.01 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.0 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.99 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.99 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.98 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.98 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.98 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.97 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.96 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.95 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.94 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.93 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.93 | |
| PLN02472 | 246 | uncharacterized protein | 98.93 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.93 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.9 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.89 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.89 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.89 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.88 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.88 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.88 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.88 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.88 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.87 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.86 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.82 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.81 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.81 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.8 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.75 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.74 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.73 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.72 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.68 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.66 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.63 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.62 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.6 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.58 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.58 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.54 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.53 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.52 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.5 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.48 | |
| PLN02357 | 360 | serine acetyltransferase | 98.47 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.47 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.47 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.46 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.45 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.44 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.44 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.43 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.4 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.4 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.39 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.38 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.38 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.38 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.37 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.37 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.37 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.36 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.34 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.33 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.33 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.32 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.3 | |
| PLN02739 | 355 | serine acetyltransferase | 98.29 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.27 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.27 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.26 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.26 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.25 | |
| PLN02739 | 355 | serine acetyltransferase | 98.25 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.25 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.24 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.22 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.21 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.2 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.2 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.17 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.17 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.14 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.11 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.07 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 98.07 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.05 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.04 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.01 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.0 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.99 | |
| PLN02357 | 360 | serine acetyltransferase | 97.99 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.96 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 97.91 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.76 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.74 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.73 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.72 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.61 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.51 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.46 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.42 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.4 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.29 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.15 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.14 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.13 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 97.07 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.94 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.85 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.84 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.76 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.48 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.29 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.75 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 95.44 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.25 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 92.53 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 90.61 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 88.93 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 87.97 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 86.01 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 84.23 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 83.29 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 82.07 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 81.68 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 80.54 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-70 Score=543.59 Aligned_cols=387 Identities=42% Similarity=0.750 Sum_probs=350.8
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+++++.|+|||||.|+||.|||+.++||.+|++|+|+|||++|+||.++||.+|.|+++|+..+|.+||..+++|+++.
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~- 80 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR- 80 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
..+++.+++++|...++.|+.||++++++.++++++...+.+|++.||++|++|+.++++.|.++++++|+++.+++.+
T Consensus 81 -~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~ 159 (393)
T COG0448 81 -KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE 159 (393)
T ss_pred -ccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH
Confidence 4566889998887566779999999999999999988899999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d 322 (521)
+++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++... +..|
T Consensus 160 eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~D 220 (393)
T COG0448 160 EASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHD 220 (393)
T ss_pred hhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCcccc
Confidence 9999999999999999999999987211 12289999999999999999986543 4579
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccce
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDS 401 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~ 401 (521)
|+.++||.+++++ ++++|+++|||.||||+++|++||+.++... |.+. ++++.++|++....+||+++. ++.+.+|
T Consensus 221 fgkdiIp~~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~~-lyd~~w~IyT~~~~~pPak~~~~s~v~nS 297 (393)
T COG0448 221 FGKDIIPKLLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELN-LYDRNWPIYTKNKNLPPAKFVNDSEVSNS 297 (393)
T ss_pred chHHHHHHHHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-Cccc-ccCCCCceeecCCCCCCceEecCceEeee
Confidence 9999999999855 4999999999999999999999999999844 7787 899999999999999999987 5667999
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.|+.||+|.. .|.||+|+.+++|+++|.|++|++|++ +.||++|+|++|||++||.|++|
T Consensus 298 Lv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g 357 (393)
T COG0448 298 LVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEG 357 (393)
T ss_pred eeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCC
Confidence 9999999999 889999999999999999999999998 79999999999999999999999
Q ss_pred cEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 482 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 482 ~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++|.+.. ++..+.. +.+. +++++|+++..++.+..
T Consensus 358 ~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 358 VVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 9998865 4444444 5666 88899999999987654
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=546.20 Aligned_cols=433 Identities=70% Similarity=1.161 Sum_probs=379.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||+|+||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.|+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 56899999999999999999999999999999878999999999999999999999999999999999976654432223
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcC---cceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
...++.++...|+..+..|++||+++++++++++++.. .++||+++||++++.|+.+++++|+++++++|+++.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 33446666665644444578999999999988876532 579999999999999999999999999999999998887
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
.+++..||++.+|++++|++|.|||..+..+++++++++|.+++......++++++|+|+|++++|..++++.++...+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 65678999999998899999999997766667888999888777544444679999999999999987877665555578
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEE
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVI 403 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~I 403 (521)
.+++++.+++++.++++|.+++||.||+++++|++|++.++... |... +++++.++++.....||+.+.++.+.+|+|
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFS-FYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhh-ccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 89999999987789999999999999999999999999999865 5455 667788899888888999998888888999
Q ss_pred CCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcE
Q 009971 404 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 483 (521)
Q Consensus 404 g~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 483 (521)
+++|.|++|.|++|+||++|.||++|+|.++++|+.+||+.++........|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998889999999999999999999999999999988776665555676667899999999999999999999999
Q ss_pred EeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 484 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 484 i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.+.+++.+..++|++|+|++|+|+||+++.|++||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998899999999999986
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=506.78 Aligned_cols=365 Identities=42% Similarity=0.703 Sum_probs=322.3
Q ss_pred CcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCC
Q 009971 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (521)
Q Consensus 84 ~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (521)
|.+ +.|+|+||.||.||||+|||..+||||+|++ |||||+|++++|.++||++|++.++|++++++.|+.+.|..++|
T Consensus 5 ~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lg 82 (371)
T KOG1322|consen 5 PAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELG 82 (371)
T ss_pred ccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccc
Confidence 444 7899999999999999999999999999997 78999999999999999999999999999999999998854432
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
|+++..+|+ +|.|+.||++++++.+|.+++ .+|++|+||++|++||++|+++|+++++++|+++++++
T Consensus 83 -------Vei~~s~et--eplgtaGpl~laR~~L~~~~~---~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 83 -------VEILASTET--EPLGTAGPLALARDFLWVFED---APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred -------eEEEEEecc--CCCcccchHHHHHHHhhhcCC---CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 899998885 489999999999999988763 48999999999999999999999999999999999988
Q ss_pred cccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
+ +++||+|+.|+ .|+|.+|.|||+... ++-.++|||+|++++|.+++ .+++.
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~ptS-- 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPTS-- 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hcccc--
Confidence 6 88999999998 799999999999543 34677999999999999877 34544
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceE
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSV 402 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~ 402 (521)
|+++++|.+++ ++++++|.++|||+|||+|+||+.+ +. ||+.+.+.++..+++||+.+.++++.|++
T Consensus 204 iekEifP~~a~-~~~l~a~~l~gfWmDIGqpkdf~~g-----------~~-~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~ 270 (371)
T KOG1322|consen 204 IEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKDFLTG-----------FS-FYLRSLPKYTSPRLLPGSKIVGNVLVDSI 270 (371)
T ss_pred hhhhhhhhhhh-cCceEEEecCchhhhcCCHHHHHHH-----------HH-HHHhhCcccCCccccCCccccccEeeccc
Confidence 89999998888 8999999999999999999999999 33 77888888999999999999888777755
Q ss_pred ECCCcEEceeEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
++.| .+|.|+ +++||++|+|++|++|++|+++++++|++.+...+.+.++.+|++++ + +|+++++||+|
T Consensus 271 ~~iG---~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~--~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 271 ASIG---ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIW--A-----RIDKNAVLGKN 340 (371)
T ss_pred cccC---CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCc--e-----EEecccEeccc
Confidence 4444 235555 59999999999999999999999999999999888887777444433 3 89999999999
Q ss_pred cEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 482 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 482 ~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
|++.+.++++++ ++.++++++++|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999998887 7899999999999988873
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=517.68 Aligned_cols=429 Identities=66% Similarity=1.128 Sum_probs=367.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 457999999999999999999999999999998669999999999999999999999999999999998643221 11
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
..+++.++...|...++.|++||++++++++.+++....++||+++||++++.|+.++++.|+++++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 22335555555544556677999999999999886533478999999999999999999999999999999998776556
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhc
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~d 326 (521)
+..||++.+|++++|..|.|||.......+.++.++|...+.......+++++|+|+|++++|.++++.. +...++.++
T Consensus 158 ~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~d 236 (429)
T PRK02862 158 ASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKE 236 (429)
T ss_pred cccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHH
Confidence 7789999999889999999999865555677777777666655444567999999999999997777643 234567789
Q ss_pred chHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCC
Q 009971 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~ 406 (521)
+++.+++ +.++++|.+++||.|+||+++|++||+.++....|... .+.+.+++++.+.+.||+.+.++.++++.||++
T Consensus 237 il~~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~ 314 (429)
T PRK02862 237 IIPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFS-FYDEKAPIYTRARYLPPSKLLDATITESIIAEG 314 (429)
T ss_pred HHHHHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCccc-ccCCCCceeccCCCCCCccccccEEEeCEECCC
Confidence 9999986 78999999999999999999999999999844445555 667788999999999999888888899999999
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
|.|.+|.|.+|+||.+|+||++|+|.+|++|+.+||+..+....+.-.+..++.||++|+|++|+|+++|.||++|++.+
T Consensus 315 ~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 315 CIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN 394 (429)
T ss_pred CEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence 99955999999999999999999999999999999887776555655666678999999999999999999999999999
Q ss_pred CCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 487 SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 487 ~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.+.+.+..+...|++|+.|+|+|++++++++|++|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 395 KDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 99999999999999999999999999999999976
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=461.93 Aligned_cols=375 Identities=38% Similarity=0.670 Sum_probs=312.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+...|++...
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5689999999999999999999999999999987689999999999999999999999999999999987555543221
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
...+.+++.++...++.|++||++++++++++++....++||+++||++++.|+.++++.|+++++++|+++...+.++
T Consensus 80 -~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 80 -NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred -CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 1224555333333445688999999999999886433468999999999999999999999998999988887665556
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCCh
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDF 323 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d~ 323 (521)
+..||++.+|++++|.+|.|||..+. .+++++|+|+|++++|..++++.. ....+|
T Consensus 159 ~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDF 217 (380)
T ss_pred ccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhh
Confidence 77899999988899999999986432 358999999999998877766432 123467
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceE
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSV 402 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~ 402 (521)
.+++++.+++.+.++++|.++++|.||||+++|++||+.++... +... ++++...+++.+.+.+|+.++ ++.|.++.
T Consensus 218 ~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 295 (380)
T PRK05293 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE-NPLN-LFDRNWRIYSVNPNLPPQYIAENAKVKNSL 295 (380)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC-chhh-hcCCCCceecCCcCCCCCEECCCCEEecCE
Confidence 78999999987889999999999999999999999999988765 3344 667778888888888899886 67788999
Q ss_pred ECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCc
Q 009971 403 IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNV 482 (521)
Q Consensus 403 Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~ 482 (521)
||++|.|+. .+.+|+||++|+||++|+|.+|+++++ +.||++|+|.+|+|++++.||+++
T Consensus 296 Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~ 355 (380)
T PRK05293 296 VVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGV 355 (380)
T ss_pred ECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCC
Confidence 999999975 567999999999999999999999987 689999999999999999999999
Q ss_pred EEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 483 KIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 483 ~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.+... .+++||+++.|+++++|
T Consensus 356 ~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 356 IIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9976321 13567777777777664
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=454.08 Aligned_cols=385 Identities=37% Similarity=0.645 Sum_probs=310.6
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~---~ 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS---G 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc---c
Confidence 5778999999999999999999999999999998669999999999999999999999999999999998643221 0
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
....++..+. .|....+.|++||+++++.+++++++...++||+++||++++.|+.++++.|+++++++|+++...+.+
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~ 157 (407)
T PRK00844 79 LLGNYITPVP-AQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE 157 (407)
T ss_pred cCCCeEEECC-cccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH
Confidence 1122232211 122223457799999999999998653335699999999999999999999999999999998776545
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d 322 (521)
++..||++.+|++|+|..|.|||..+... . ....++++++|+|+|++++|.+++++.. ....+
T Consensus 158 ~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~ 223 (407)
T PRK00844 158 EASAFGVIEVDPDGRIRGFLEKPADPPGL--P------------DDPDEALASMGNYVFTTDALVDALRRDAADEDSSHD 223 (407)
T ss_pred HcccCCEEEECCCCCEEEEEECCCCcccc--c------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCccccc
Confidence 67789999999889999999998653210 0 0012368999999999999866665321 13346
Q ss_pred hhhcchHhhhhCCceEEEEEe------------cceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCC
Q 009971 323 FGSEVIPGATSIGMRVQAYLY------------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~------------~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
+..|+++.+++. .++++|.+ ++||.||+|+++|++||+.++.+. +.+. ++.+..++++..+..||
T Consensus 224 ~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~-~~~~~~~~~~~~~~~~~ 300 (407)
T PRK00844 224 MGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFN-LYNREWPIYTSSPNLPP 300 (407)
T ss_pred chhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-Cccc-cCCCCCcccccCCCCCC
Confidence 678999999985 48999976 599999999999999999999765 3344 56677788888888888
Q ss_pred ceeecc-----cccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCC
Q 009971 391 SKMLDA-----DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 391 ~~i~~~-----~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~ 465 (521)
+.+... .+.+++||++|.|+++.|.+|+||++|+|+++|+|++|+++.+ +.||++|
T Consensus 301 ~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~ 361 (407)
T PRK00844 301 AKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGA 361 (407)
T ss_pred ceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCC
Confidence 887532 4678999999999888899999999999999999999999987 6899999
Q ss_pred EEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEc-CCeEEECCCCEE
Q 009971 466 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK-SGIVTIIKDALI 515 (521)
Q Consensus 466 ~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~-~g~v~I~~~~~i 515 (521)
+|.+|+|++++.||+++++.+.. +.+ +.+++|. +|+++|++|+.|
T Consensus 362 ~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 362 VVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 99999999999999999997731 122 3366665 788999988764
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=454.26 Aligned_cols=390 Identities=37% Similarity=0.653 Sum_probs=316.1
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (521)
.++++++|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.+. .
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~- 88 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-R- 88 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-c-
Confidence 34578999999999999999999999999999998734999999999999999999999999999999998754321 0
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.....++.++...+....+.|++||++++++++++++...+++||+++||++++.|+.++++.|.++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 00123455555555433455789999999999999875445789999999999999999999999999999999887655
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (521)
+++..||++.+|++++|..|.|||..+.. +. .....+++++|+|+|++++|.+++.+.. ....
T Consensus 169 ~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~ 234 (425)
T PRK00725 169 EEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSH 234 (425)
T ss_pred hhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccc
Confidence 56789999999988999999999864321 00 0011469999999999998866665421 1345
Q ss_pred ChhhcchHhhhhCCceEEEEEec-----------ceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCC
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~-----------g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
+|.+|+++.+++ ..++++|.++ +||.||||+++|++||+.++... +... +++...++++..+..||
T Consensus 235 ~~~~dii~~l~~-~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~-~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 235 DFGKDIIPKIVE-EGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELD-LYDRNWPIWTYQEQLPP 311 (425)
T ss_pred hhhHHHHHHHhc-cCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhh-ccCCCCccccCCCCCCC
Confidence 677899999998 5589999985 59999999999999999998754 4444 56677788888888888
Q ss_pred ceee------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCC
Q 009971 391 SKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 464 (521)
Q Consensus 391 ~~i~------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~ 464 (521)
+.+. .+.+.+++||+||+|.+|.|.+|+||++|.||++|+|++|++|++ +.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 8763 134679999999999669999999999999999999999999997 699999
Q ss_pred CEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 465 SHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 465 ~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
|+|.+|+|+++|+|+++++|... ..++..+ ..++..|+|+|++++.+-
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CEEeeEEECCCCEECCCCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 99999999999999999999643 3333323 455678889999986653
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=412.18 Aligned_cols=353 Identities=28% Similarity=0.455 Sum_probs=286.1
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++++|+.+++.+.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 48999999999999999999999999999976 99999999999999999999999999999999998643322
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
.+..+... . ++||+++|+++.+.+.. ++|++++||++++.|+.+++++|+++.+.+++...+.... .
T Consensus 74 -~I~y~~e~----~---~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~ 140 (358)
T COG1208 74 -RITYVVEK----E---PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--S 140 (358)
T ss_pred -ceEEEecC----C---cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--C
Confidence 13332211 1 49999999999988863 7999999999999999999999999988788888776653 7
Q ss_pred ceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 249 AFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 249 ~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.||++..+++ ++|.+|.|||.... ..+++.++|+|+|++++|+ ++. .....+|..++
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~--~~~~~~~~~~~ 198 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIE--KGERFDFEEEL 198 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hcc--cCCcccchhhH
Confidence 8999998754 59999999995311 1246999999999999997 333 23455677789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCC-cCCCceeecccccceEECCC
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR-YLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~i~~~~Ig~~ 406 (521)
++.+++.+..++++.++++|+|||||++|.+|+..++...... +......... ... +.+ +++++||++
T Consensus 199 ~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~-~~i----~gp~~ig~~ 267 (358)
T COG1208 199 LPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS------PLGPIEEPVVIIRS-AYI----IGPVVIGPG 267 (358)
T ss_pred HHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccc------cccccccccccccc-ceE----eCCEEECCC
Confidence 9999996666999999999999999999999999988643110 1111111100 111 211 356778888
Q ss_pred cEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEE
Q 009971 407 CVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 407 ~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 484 (521)
|.|+. +.|. +++||++|+||+++.|.+|++|++ +.|+++++|.+|||+.||+||+++ .
T Consensus 268 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~ 327 (358)
T COG1208 268 AKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I 327 (358)
T ss_pred CEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e
Confidence 88887 7777 799999999999999999999998 689999999999999999999933 2
Q ss_pred eCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 485 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 485 ~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++ +.++.++.+..| +++++++.+.+++++
T Consensus 328 -----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 328 -----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 777 888888899989 889999988888754
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=408.13 Aligned_cols=356 Identities=48% Similarity=0.858 Sum_probs=283.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.||||+|||+++||||+||+|++|||+|++++|.++|+++|+|++++..+++.+|+.+.+... .. ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~--~~-~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFD--GF-IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCcc--Cc-cCCCE
Confidence 6999999999999999999999999998658999999999999999999999999999999998643321 00 11235
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
+++...+...++.|++||+++++.+++++++...++|++++||++++.++.++++.|+++++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 55544443345667799999999999888643347899999999999999999999998888888888776655677899
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCChhhcch
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVI 328 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d~~~dil 328 (521)
++.+|++++|..|.|||..+..... ....+++++|+|+|++++|.++++... ....++.++++
T Consensus 158 ~v~~d~~~~v~~~~ekp~~~~~~~~--------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l 223 (361)
T TIGR02091 158 VMQVDEDGRIVDFEEKPANPPSIPG--------------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223 (361)
T ss_pred EEEECCCCCEEEEEECCCCcccccc--------------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH
Confidence 9999888999999999854321000 001248999999999999866665422 12345668999
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCC-CcCCCceee-cccccceEECCC
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQP-RYLPPSKML-DADVTDSVIGEG 406 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~-~~~i~~~~Ig~~ 406 (521)
+.+++ ..++++|.++++|.||||+++|++|++.++.+. +... .+....++.+.. ++.|++.+. .+.+.+++||++
T Consensus 224 ~~l~~-~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 300 (361)
T TIGR02091 224 PRALE-EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFD-LYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEG 300 (361)
T ss_pred HHHhh-cCceEEEeeCCEEEECCCHHHHHHHHHHHhCCC-chhh-ccccCCceecCCCCCCCceEecCCCEEECCEECCC
Confidence 99998 459999999999999999999999999999765 3222 334445554332 344555555 346788999999
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
|+|+.+.|.+|+||++|.|+++|+|.+|+++++ +.||++++|++|+|+++++||.+++|.|
T Consensus 301 ~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 301 CIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 999886778999999999999999999999887 6899999999999999999999998864
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=410.91 Aligned_cols=350 Identities=26% Similarity=0.461 Sum_probs=275.7
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChH-HHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (521)
+|+|||||+|+|+||+|||..+||||+||+|++|||+|+|++|.++|+++|+|++++..+ ++++||.+...|++... .
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~-~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRK-R 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccc-c
Confidence 689999999999999999999999999998755999999999999999999999999887 99999987555543211 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+...++ .| +.+.|.+|+++++.+++++++....++||+++||++++.|+.+++++|+++++++|+++.+.+.+++
T Consensus 81 ~~~~~~~--~~--e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 81 DGLFVFP--YN--DRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred CcEEEEe--cc--CCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 1111111 22 1222335777788888888853234789999999999999999999999999999999988764455
Q ss_pred ccee-EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC-CCChhh
Q 009971 248 TAFG-LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFGS 325 (521)
Q Consensus 248 ~~~g-~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~d~~~ 325 (521)
..|+ ++..|++|+|..+.+++.... ....++|+|+|++++|.+++++..+. ..++..
T Consensus 157 ~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 215 (369)
T TIGR02092 157 SEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215 (369)
T ss_pred cccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHH
Confidence 6774 556777788887754332111 13678999999999876676543332 224456
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceEEC
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSVIG 404 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig 404 (521)
++++.+++ +.++++|.++++|.||||+++|++||+.++++...... +.....+++....+.+|+.++ ++.|.+|+||
T Consensus 216 d~i~~~~~-~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig 293 (369)
T TIGR02092 216 ELIRENLK-ELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSL-FYSSQGPIYTKVKDEPPTYYAENSKVENSLVA 293 (369)
T ss_pred HHHHHHhc-cCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhh-cCCCCCceeeccCCCCCcEEcCCCEEEEeEEc
Confidence 88998886 67899999999999999999999999999877532111 112233555555566888886 7778999999
Q ss_pred CCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEE
Q 009971 405 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 405 ~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 484 (521)
+||.|+ +.|.+|+||++|+|+++|+|.+++++++ +.|++++++.+|+|+++++||+++++
T Consensus 294 ~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 294 NGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEe
Confidence 999997 4688999999999999999999999987 68999999999999999999999999
Q ss_pred eC
Q 009971 485 VN 486 (521)
Q Consensus 485 ~~ 486 (521)
.+
T Consensus 354 ~~ 355 (369)
T TIGR02092 354 AG 355 (369)
T ss_pred CC
Confidence 65
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=379.93 Aligned_cols=385 Identities=25% Similarity=0.301 Sum_probs=316.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||||.||||. ..+||-|.|++|+ ||++|+++.+...+.+++.+|.++..+++++.+.+.. .
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~--------~ 68 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD--------D 68 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc--------C
Confidence 35899999999999999 6899999999997 9999999999999999999999999999999988631 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
..+ +++.. ++||++|+.+++++|.+...+++|+++||+ |...+ ++.|++.|...++.++++....++
T Consensus 69 v~~--v~Q~e--------qlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d- 137 (460)
T COG1207 69 VEF--VLQEE--------QLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD- 137 (460)
T ss_pred ceE--EEecc--------cCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC-
Confidence 122 22322 399999999999999443456899999999 77655 889999999999999999988664
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCCh-hhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKG-EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (521)
|..||-+..+++|+|..|.|..+. +..+++ ..+++|+|+|+.+.|.++|..-. ...+
T Consensus 138 -P~GYGRIvr~~~g~V~~IVE~KDA~~eek~I------------------~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 138 -PTGYGRIVRDGNGEVTAIVEEKDASEEEKQI------------------KEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred -CCCcceEEEcCCCcEEEEEEcCCCCHHHhcC------------------cEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 889999999989999999985554 333333 48999999999887777776422 2335
Q ss_pred ChhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~ 387 (521)
.|.+|++..+...+.++.++..+++ ..-+++-..+.++++.|.++. .|.-. |++.+..|..++.+
T Consensus 199 YYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~-~i~~dv~ig~DvvI 277 (460)
T COG1207 199 YYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATT-YIRGDVEIGRDVVI 277 (460)
T ss_pred EeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeE-EEcCcEEECCceEE
Confidence 5779999999888999999999865 577889888888887664432 25544 77777777777777
Q ss_pred CCCceee-------------cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC-----ccccccccc
Q 009971 388 LPPSKML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADR 448 (521)
Q Consensus 388 ~~~~~i~-------------~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~-----~~~e~~~~~ 448 (521)
.|++.+. +|.|+||.|++++.|.. +.|.+|.||++|.||+.++|.+...+++ +|+|+ +
T Consensus 278 ~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv---K 354 (460)
T COG1207 278 EPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV---K 354 (460)
T ss_pred ecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE---e
Confidence 7755443 45567788888888888 8888899999999999988875544443 47887 9
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCcee-ecCCeEEcCC-----eEEECCCCEECCCccC
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR-ETDGYFIKSG-----IVTIIKDALIPSGTII 521 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~-~~~~~~I~~g-----~v~I~~~~~i~~gsvi 521 (521)
++.||+|. ..++=++|.++.||+++.||++++..|+|+..+..+ ||+++|||++ +|+||+++.|++||+|
T Consensus 355 ~a~ig~gs---Ka~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 355 KATIGKGS---KAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccccCCc---cccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 99999999 999999999999999999999999999999988876 9999999999 5999999999999986
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=378.50 Aligned_cols=332 Identities=23% Similarity=0.341 Sum_probs=239.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecC-ChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+|||||||.|+||+|||..+||||+|++|+ |||+|++++|.++|+++|++++++ +.+++.+|+.+...|++ .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~------~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGA------K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCc------e
Confidence 589999999999999999999999999987 999999999999999999999999 88999999986433321 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
+.++. + .+..||+++++.++.+++ .++||+++||++++.++.++++.|+++++++++++.+.++ +..
T Consensus 74 -~~~~~--~-----~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~ 140 (353)
T TIGR01208 74 -ITYIV--Q-----GEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD--PTA 140 (353)
T ss_pred -EEEEE--C-----CCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC--hhh
Confidence 22221 2 124899999999998885 3689999999999999999999999999999998877653 567
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC--CCChhhcc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~d~~~di 327 (521)
|+.+.++++++|.+|.|||..+. +.+.++|+|+|++.+++ ++++..+. ...+..++
T Consensus 141 ~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~ 198 (353)
T TIGR01208 141 FGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDA 198 (353)
T ss_pred CeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHH
Confidence 99888876679999999986432 24889999999997775 55433221 22335789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceEECCC
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEG 406 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~ 406 (521)
++.+++.+.++++|.++++|.||||++||++||+.++.+.... +. .+.+.+.+.+|+.+. ++.|.+++|+.+
T Consensus 199 l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~---~~----~i~~~~~i~~~~~i~~~~~i~~~~i~~~ 271 (353)
T TIGR01208 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVERE---VQ----GVDDESKIRGRVVVGEGAKIVNSVIRGP 271 (353)
T ss_pred HHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccc---cC----CcCCCCEEcCCEEECCCCEEeCCEEECC
Confidence 9999987889999999999999999999999999998753221 10 133344444554443 344444555444
Q ss_pred cEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCC-CEEeeeEECCCCEECCCcEE
Q 009971 407 CVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN-SHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 407 ~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~-~~i~~~ii~~~~~Ig~~~~i 484 (521)
|.|++ |.|.+++|+.+|.||++|+|+++.+.+ +.+++++ .|+.+ +++.+++|++++.|++++.+
T Consensus 272 ~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~-----------s~i~~~~---~i~~~~~~~~~~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 272 AVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEH-----------SIVLDES---VIEGVQARIVDSVIGKKVRIKGNRRR 337 (353)
T ss_pred cEECCCCEEcCcEECCCCEECCCCEEeeeEEEe-----------eEEcCCC---EEcCCcceeecCEEcCCCEECCCccc
Confidence 55554 555555555555555555554333311 2222222 45544 25555566666665555555
Q ss_pred e
Q 009971 485 V 485 (521)
Q Consensus 485 ~ 485 (521)
.
T Consensus 338 ~ 338 (353)
T TIGR01208 338 P 338 (353)
T ss_pred c
Confidence 4
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=379.95 Aligned_cols=392 Identities=20% Similarity=0.283 Sum_probs=284.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+|+.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 4578999999999999984 789999999987 9999999999999999999999999999999987521
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++. + .+.+||+++++.++.++++. .++||+++||+ +.+.++.++++.|.+.+++++++..+.++
T Consensus 69 ---~i~~~~--~-----~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~ 137 (459)
T PRK14355 69 ---DVSFAL--Q-----EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLEN 137 (459)
T ss_pred ---ceEEEe--c-----CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 133321 1 11389999999999988631 46899999998 44677999999998888888888766543
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
+..|+.+.+|++++|..+.|||.....+ ..++++++|+|+|++++|.++++...+ ...
T Consensus 138 --~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 138 --PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred --CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 4578998888889999999886422110 013588999999999976666653222 123
Q ss_pred ChhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCCC-----CCccccccCCC-cccCCCCcCCCcee
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKPI-----PDFRYFYDRSA-PIYTQPRYLPPSKM 393 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~~-----~~~~~~~~~~~-~i~~~~~~~~~~~i 393 (521)
.+.+++++.+++++.++++|+++++ |+|++|+++|++|++.++.... .... ++++.+ .+...+.+.+++.+
T Consensus 199 ~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~-~i~~~~~~i~~~v~ig~~~~I 277 (459)
T PRK14355 199 YYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVT-LIDPETTYIDRGVVIGRDTTI 277 (459)
T ss_pred eeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCE-EECCCceEECCCeEEcCCCEE
Confidence 4468999999998889999999987 9999999999999876553211 1112 444543 35555556566655
Q ss_pred e-cccc-cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccccccCCCc--------cee
Q 009971 394 L-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV--------PIG 460 (521)
Q Consensus 394 ~-~~~i-~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~~~~~~~~--------~~~ 460 (521)
. ++.| .+++||++|.|+. |.|.+++||++|.|+++|+|.++++.++.+....+. ..+.+++++. .+.
T Consensus 278 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 278 YPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred eCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 4 4444 4688999999987 888899999999999999998887776654321111 2233344331 122
Q ss_pred eCCCCE------EeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 461 IGKNSH------IKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 461 Ig~~~~------i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
||+++. +.+++|+++|.||.++++.+.++... ...+|++++|+.+. ++||++++|++||+|
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 333333 33568888888888888766554433 23455666555552 788999999999875
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=378.11 Aligned_cols=389 Identities=20% Similarity=0.250 Sum_probs=275.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
..+.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+..
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~--------- 69 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA--------- 69 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---------
Confidence 357899999999999996 689999999986 9999999999999999999999998888888886521
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.. +.++. + ++..||+++++.++.++....+++||+++||+ ++ ..++.++++.|++++++++++..+.+
T Consensus 70 ~~-~~~~~--~-----~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~-- 139 (482)
T PRK14352 70 PE-VDIAV--Q-----DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD-- 139 (482)
T ss_pred Cc-cEEEe--C-----CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--
Confidence 01 22221 1 22489999999999888543346899999998 44 46799999999888888887776654
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d 322 (521)
++..|+.+..|++++|.+|.|||.....+ ....++++|+|+|++++|.++++...+. ...
T Consensus 140 ~p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 DPTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 36689988888889999999998753321 0124789999999999997776643321 234
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHH------HHHhhhcccCCC--------CCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF------YNANLGITKKPI--------PDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy------~~An~~ll~~~~--------~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+|+++.+++.+.++++|+++++|.|+++++.| ..+++.++.... |... ++++...|+..+++.
T Consensus 203 ~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~-~i~~~v~ig~~~~I~ 281 (482)
T PRK14352 203 YLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATT-WIDVDVTIGRDVVIH 281 (482)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeE-EEeCCEEECCCcEEe
Confidence 4689999999988899999999999999999887 445544433211 1122 444444454555554
Q ss_pred CCceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCc-cccccc-ccccccc
Q 009971 389 PPSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGAD-YYETDA-DRRFLAA 453 (521)
Q Consensus 389 ~~~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~-~~e~~~-~~~~~~~ 453 (521)
|++.+. ++.|.+++||++|.|+++.+.+++||.++.||++|.|....+++++ ...... ...+.|+
T Consensus 282 ~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~ 361 (482)
T PRK14352 282 PGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIG 361 (482)
T ss_pred CCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEEC
Confidence 444442 2334445555555555444556677777777777777644444432 111111 1345566
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.++ .|++.+++.+++||++|.||.++++.+.++ +++.+++|.++.|..+ ++||++++|++|++|
T Consensus 362 ~~~---~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 362 RGT---KVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred CCc---EEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 555 677777788899999999999999987543 4444455555555555 789999999999875
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=369.41 Aligned_cols=385 Identities=19% Similarity=0.234 Sum_probs=264.7
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.. .
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~--------- 71 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S--------- 71 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C---------
Confidence 469999999999999996 589999999987 99999999999999999999999988888888853 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+ +.++. + .++.||+++++.++.+++. ..++||+++||+ +.+.++.++++.|+++++++|+++.+.++
T Consensus 72 -~-i~~v~--~-----~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~- 140 (481)
T PRK14358 72 -G-VAFAR--Q-----EQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD- 140 (481)
T ss_pred -C-cEEec--C-----CCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC-
Confidence 1 23332 1 2348999999999988752 235799999998 44567999999999999999988877653
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d 322 (521)
+..||.+.+|++++|.+|.|||.....+ ....++++|+|+|++++++ +++... ...+.
T Consensus 141 -~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~ 201 (481)
T PRK14358 141 -ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEY 201 (481)
T ss_pred -CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeE
Confidence 4579999999889999999998643211 0124789999999966532 333211 11233
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh-cccCCC-------------CCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG-ITKKPI-------------PDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~-ll~~~~-------------~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+|+++.+++.+.++++|.++++|..++...+|+.+++. ++++.. |... ++.+...|+.++.+.
T Consensus 202 ~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~Ig~~~~I~ 280 (481)
T PRK14358 202 YLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTI-LIEDTVTLGRDVTIE 280 (481)
T ss_pred EHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCee-eccCCcEECCCCEEe
Confidence 4579999999878899999999998888887777676654 322110 1111 122233333333333
Q ss_pred CCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccccccCCCc--------
Q 009971 389 PPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV-------- 457 (521)
Q Consensus 389 ~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~~~~~~~~-------- 457 (521)
+++.+. .++.||++|.|+. |.|.+|+||++|.|+++++|.++++..+.+....+. ..+.||+++.
T Consensus 281 ~~~~I~----~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~ 356 (481)
T PRK14358 281 PGVLLR----GQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETK 356 (481)
T ss_pred CCcEEe----CCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEEC
Confidence 333332 2355666666665 666666677777776666666655555443322221 1233333330
Q ss_pred ------ceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCc-eeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 458 ------PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 458 ------~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~-~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
-+.||+.+.+.+++||+||.||.++++.|.++.... +.+|++++|+.+. ++||++++|++||+|
T Consensus 357 ~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 357 NARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred CceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 013344444567889999999999999886554333 3566666666662 678999999998864
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=365.82 Aligned_cols=382 Identities=21% Similarity=0.235 Sum_probs=260.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+ +.
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 799999999987 99999999999999999999999998888888875 11
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.++... . ..|+++++++++.++++ .++|++++||+ ++ +.++..+++.|.+. ..++++.+.+ ++
T Consensus 66 -i~~~~~~----~---~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~--~~ 131 (451)
T TIGR01173 66 -VNWVLQA----E---QLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP--DP 131 (451)
T ss_pred -cEEEEcC----C---CCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC--CC
Confidence 2222111 1 27999999999988853 36899999998 44 46699999988664 3666666653 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..|++++|..+.|||...... ...+++++|+|+|++++|.++++..... ...+.
T Consensus 132 ~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~ 194 (451)
T TIGR01173 132 TGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL 194 (451)
T ss_pred CCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH
Confidence 568888888889999999987543211 0135889999999999876666543221 22345
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcC--
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYL-- 388 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~-- 388 (521)
+++++.+++++.++++|.++++ |++++|+++|.+++..+..+. .|... .+.+...|..++.+.
T Consensus 195 ~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ig~~~~i~~~ 273 (451)
T TIGR01173 195 TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARF-DIRGTVEIGRDVEIDPN 273 (451)
T ss_pred HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeE-EECCccEECCCCEEcCC
Confidence 7999999987889999999987 999999999988866443211 01001 122222222222222
Q ss_pred ----------CCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcc-eEEECCcccccccc-ccccccC
Q 009971 389 ----------PPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAK 454 (521)
Q Consensus 389 ----------~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~-s~i~~~~~~e~~~~-~~~~~~~ 454 (521)
+.+.+. ++.+.+++||++|.|++ |.|.+++||.+|.||++++|.+ +++.++.......+ .++.|++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~ 353 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK 353 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence 222222 33345566666666665 6666666666666666666653 33322222111111 2345555
Q ss_pred CCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 455 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++ .|++.+.+.+|.|++++.||.++++.+.++..+ ...++++++|+.+. ++||++++|++|++|
T Consensus 354 ~~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 354 GS---KAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred Cc---EecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 55 556666666788889999999988877544433 24456666665552 789999999999875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=368.08 Aligned_cols=385 Identities=19% Similarity=0.227 Sum_probs=264.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|+++.|.++|++++++++++..+++.+++...
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC---------
Confidence 567999999999999998 3699999999986 999999999999999999999999888888888641
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++... +..||+++++.++.++++ .++||+++||+ +.+.++.++++.|.+.+ +++++.+.+
T Consensus 70 ---~~~~i~~~-------~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~- 134 (456)
T PRK09451 70 ---PLNWVLQA-------EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD- 134 (456)
T ss_pred ---CcEEEECC-------CCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC-
Confidence 12222111 137999999999987752 46899999998 44677999998886544 445555544
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
++..||.+.. ++++|.+|.|||.....+ ...+++++|+|+|+++.|.+++++..+ ..+
T Consensus 135 -~~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e 195 (456)
T PRK09451 135 -NPTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGE 195 (456)
T ss_pred -CCCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCc
Confidence 3567998754 578999999998632211 012489999999999988777764332 133
Q ss_pred ChhhcchHhhhhCCceEEEEE------ecce--EEecCCHHHHHHHhhh--cccCC----CCCcc-----------cccc
Q 009971 322 DFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEAFYNANLG--ITKKP----IPDFR-----------YFYD 376 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~------~~g~--w~dIgt~edy~~An~~--ll~~~----~~~~~-----------~~~~ 376 (521)
.+.+|+++.+++++.++++|. +.|+ |.|++++++|+++|+. ++... .|... .+++
T Consensus 196 ~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~ 275 (456)
T PRK09451 196 YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEID 275 (456)
T ss_pred eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEc
Confidence 456899999999888999996 4566 7889999999999842 22111 11100 0222
Q ss_pred CCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEc-ceEEECCccccccc-cccccc
Q 009971 377 RSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDA-DRRFLA 452 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~-~~~~~~ 452 (521)
+.+.|...+.+.+++.+. ++.|.+++|+++|.|+. |.|.+++||.++.|++++.|. ++.+.++.-....+ -+++.+
T Consensus 276 ~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 276 TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 333333333444444443 44455666677777765 666666666666666666665 23322221111111 135566
Q ss_pred cCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++|+ .+++.+.+.+|.||++|.||+++++.+.++... ..++||+++|+.+. ++||++++|++||+|
T Consensus 356 ~~~~---~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 356 GKGS---KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred CCCC---ccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 6665 566666677889999999999999887655333 24566666666552 678899999998875
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=360.80 Aligned_cols=376 Identities=18% Similarity=0.228 Sum_probs=278.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+++|||||||.||||++ .+||||+|++|+ |||+|+++.|.++ +++|+|++++..+++.+++.+.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~-------- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP-------- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------
Confidence 458999999999999996 799999999986 9999999999987 799999999999999999876211
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
.+.++.... ..+.||+++++.+.. ..++||+++||. +... +.++.+.+.++++++.+.+.++
T Consensus 68 --~v~~~~~~~-----~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~~~---~~l~~l~~~~~~~~v~~~~~~~-- 130 (430)
T PRK14359 68 --GVIFHTQDL-----ENYPGTGGALMGIEP-----KHERVLILNGDMPLVEK---DELEKLLENDADIVMSVFHLAD-- 130 (430)
T ss_pred --ceEEEEecC-----ccCCCcHHHHhhccc-----CCCeEEEEECCccCCCH---HHHHHHHhCCCCEEEEEEEcCC--
Confidence 134432211 113789999977321 247899999999 4332 3344455567788888776653
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~ 323 (521)
+..|+.+..+ +|+|..+.|++...... ...++.++|+|+|++++|.+++..... ....+
T Consensus 131 ~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~ 192 (430)
T PRK14359 131 PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYY 192 (430)
T ss_pred CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCcee
Confidence 4568887765 68999999887532100 013588999999999999866553221 12345
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccCCC------------CCccccccCCCcccCCCCcCCC
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPI------------PDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~~~------------~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
.+|+++.+++.+.+++++..+ ++|.||+|++||+.|+..+..+.. +... ++.+.+.|...+.+.++
T Consensus 193 l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~i~g~~~ig~~ 271 (430)
T PRK14359 193 LTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETI-YIESGVEFEGECELEEG 271 (430)
T ss_pred hhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCee-EECCCcEEcCceEECCC
Confidence 689999999878999999997 589999999999999865543221 1111 45555666666666777
Q ss_pred ceee-cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee
Q 009971 391 SKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 469 (521)
Q Consensus 391 ~~i~-~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~ 469 (521)
+.+. ++.+.+++||++|.|+++.|.+|+||+++.|+++++|+++.+..+. |. .++.+ +++ .||+.+.|.+
T Consensus 272 ~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~--~i---~~~~~-~~~---~i~~~~~i~d 342 (430)
T PRK14359 272 VRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFV--ET---KNAKL-NGV---KAGHLSYLGD 342 (430)
T ss_pred CEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcE--EE---cccEe-ccc---cccccccccC
Confidence 7765 5667789999999998878899999999999999999888776542 22 33455 444 8999999999
Q ss_pred eEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
|+||++|.||.++++.+.++..+ .+.+|++++|+.+. ++||++++|++|++|
T Consensus 343 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 343 CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 99999999999999987654333 23455555555552 789999999999875
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=358.92 Aligned_cols=383 Identities=18% Similarity=0.197 Sum_probs=250.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
...+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 3 ~~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK14356 3 ASTTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE--------- 69 (456)
T ss_pred CcceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc---------
Confidence 346899999999999997 4799999999987 999999999999999999999999888887776541
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.++++. + .+..||+++++.++++++....++|++++||+ +++ .++..+++.|+ +++++++..+.++
T Consensus 70 ---~~~~v~--~-----~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~ 137 (456)
T PRK14356 70 ---DARFVL--Q-----EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPD 137 (456)
T ss_pred ---CceEEE--c-----CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCC
Confidence 122322 1 11389999999999888653457899999999 554 56999998875 5677777776553
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
+..||.+.. ++|+|..+.|||+...... ...+.++++|+|+|+++++..+++.... ..+
T Consensus 138 --~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e 199 (456)
T PRK14356 138 --PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE 199 (456)
T ss_pred --CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc
Confidence 567888876 5789999999876321100 0013588999999999988766553221 223
Q ss_pred ChhhcchHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhcccCCCC------------CccccccCCCcccCCCCc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKPIP------------DFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~~~~~------------~~~~~~~~~~~i~~~~~~ 387 (521)
.+.+++++.+++.+.+++++.+++ .|++|+|++||.+|+..+..+... .-. ++++.+.+...+.+
T Consensus 200 ~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~-~i~~~~~i~~~~~i 278 (456)
T PRK14356 200 YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESV-RIGPRATIEPGAEI 278 (456)
T ss_pred EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcE-EECCCcEECCCCEE
Confidence 456899999888788999999865 579999999999998766543211 001 22333333222222
Q ss_pred CCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc-------------------
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD------------------- 447 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~------------------- 447 (521)
.+++.+. .++.||++|.|+. |.|.+++||++|.|+++|+|+++++.++...-..+.
T Consensus 279 ~~~~~i~----~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 279 YGPCEIY----GASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred eCCcEEe----CceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 2222111 2345555555554 555555555555555555554444443322211111
Q ss_pred ccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 448 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 448 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.++.+++++ .|++.+++.+++||+++.||+++.+.+.++ +++.+++|.++.|..+ ++||++++|++|++
T Consensus 355 ~~~~i~~~~---~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~ 430 (456)
T PRK14356 355 KKAVLGKGA---KANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSV 430 (456)
T ss_pred eeeEecCCc---EecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCE
Confidence 223333333 344444555677777777777776655432 3333444444444444 78999999999987
Q ss_pred C
Q 009971 521 I 521 (521)
Q Consensus 521 i 521 (521)
|
T Consensus 431 v 431 (456)
T PRK14356 431 I 431 (456)
T ss_pred E
Confidence 5
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=357.08 Aligned_cols=384 Identities=19% Similarity=0.218 Sum_probs=268.0
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 45689999999999999984 589999999987 9999999999999999999999999888888876510
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
.. +.++. + ++..|++++++.++.+++. ..++|++++||+ +++ .++..+++ +.+.+++++++..+..
T Consensus 71 --~~-~~~~~--~-----~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~~~~ 138 (446)
T PRK14353 71 --PD-AEIFV--Q-----KERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGFRAA 138 (446)
T ss_pred --CC-ceEEE--c-----CCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEEEeC
Confidence 01 12221 1 1137999999999988752 136899999998 555 45888887 4455677777776643
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CC
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GA 320 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~ 320 (521)
++..|+.+.. ++++|..+.|||...... ...+++++|+|+|+++.|.+++++... ..
T Consensus 139 --~~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 198 (446)
T PRK14353 139 --DPTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKG 198 (446)
T ss_pred --CCCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCC
Confidence 3567888777 578999999987643211 012488999999999877666654322 12
Q ss_pred CChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccC------------CCCCccccccCCCcccCCCCc
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK------------PIPDFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~------------~~~~~~~~~~~~~~i~~~~~~ 387 (521)
..+.+++++.+++.+.++++++.+ ++|.||+||+||..|+..+..+ ..|... ++++.+.|..++.+
T Consensus 199 ~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~~~~~i 277 (446)
T PRK14353 199 EYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETV-FFSYDTVIGRDVVI 277 (446)
T ss_pred cEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeE-EECCceEECCCCEE
Confidence 234678899998878899999997 5699999999999998644221 112212 44455556666666
Q ss_pred CCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-ccccccCCCcceeeCCC
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKN 464 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~ 464 (521)
.|++.+. .++.||++|.|+. +.|.+++||++|+||++++|. ++++.++..+...+. .++.+++++ .|+++
T Consensus 278 ~~~~~I~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~---~i~~~ 350 (446)
T PRK14353 278 EPNVVFG----PGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGA---KVNHL 350 (446)
T ss_pred CCCCEEC----CCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCC---EECCe
Confidence 6665553 2456677777765 666677777777777777775 344433322222211 234444444 66777
Q ss_pred CEEeeeEECCCCEECCCcEEeCCC-------ccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 465 SHIKRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 465 ~~i~~~ii~~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.+.+++|+++|.||.++++.+.+ .+++.+++|.+++|..+ ++||++++|++|++|
T Consensus 351 ~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 351 TYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred eEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 777888999999999998885543 34444555555555555 778999999998875
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=324.30 Aligned_cols=331 Identities=20% Similarity=0.325 Sum_probs=269.4
Q ss_pred ccEEEEEEeCC--CCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhh-hccCC
Q 009971 88 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAY-ASNMG 163 (521)
Q Consensus 88 ~~~~aVILAaG--~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~-~~~~~ 163 (521)
|+++||||.|| +||||+||+-+.||||+||+|. |||+|.|+.|.+ .|..+|+++.-|..+.+.+|+.... .+++
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~- 78 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKV- 78 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhccc-
Confidence 46899999999 7999999999999999999997 999999999998 6899999998888888888887632 2211
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
.+..+.. ..++||+++|++.++.+-....+.|+++++|..++++++++++.|+..+..+|++..++.
T Consensus 79 ------pvrYL~E-------~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs 145 (407)
T KOG1460|consen 79 ------PVRYLRE-------DNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVS 145 (407)
T ss_pred ------chhhhcc-------CCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEec
Confidence 1333321 125999999999997665545689999999999999999999999999999999999999
Q ss_pred cccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh---hh---
Q 009971 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DK--- 316 (521)
Q Consensus 244 ~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~---~~--- 316 (521)
.+++..||.++.|. .|+|++|.|||.... ++.+++|+|+|++++|..+-+ ..
T Consensus 146 ~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~ 204 (407)
T KOG1460|consen 146 REQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDL 204 (407)
T ss_pred HhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhh
Confidence 88899999999884 699999999999875 469999999999999864321 10
Q ss_pred ------C----CCCCCh---hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccC
Q 009971 317 ------F----PGANDF---GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYT 383 (521)
Q Consensus 317 ------~----~~~~d~---~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~ 383 (521)
+ +...|| ..|+|..|+. ..++|+|..+++|..|.|+.+-+.||+.++.+.. ..++. .+.+
T Consensus 205 ~~~~~~~~~l~~g~~d~irLeqDvlspLag-~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk-----~t~p~-~Lak 277 (407)
T KOG1460|consen 205 LEVEKDLPLLQPGPADFIRLEQDVLSPLAG-SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYK-----RTHPA-RLAK 277 (407)
T ss_pred hhhhhcccccCCCccceEEeechhhhhhcC-CCceEEEecccHHHHhccccceeehhhhHHHHHh-----hcCch-hhcC
Confidence 1 122344 3799999998 7899999999999999999999999998887531 11111 1111
Q ss_pred CCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceee
Q 009971 384 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 461 (521)
Q Consensus 384 ~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~I 461 (521)
.|++. ...++++.|.+.+.+.. ++|+ |+.||.+++||+|++|.+|+|.++ +.|
T Consensus 278 ----~pgt~--a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 278 ----GPGTQ--AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred ----CCCCC--ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 12222 01157788888888887 8888 899999999999999999999997 689
Q ss_pred CCCCEEeeeEECCCCEECCCcEEeC
Q 009971 462 GKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 462 g~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+|+++-+||||..+.||.++++..
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred eccceEEeeeecccccccceeeecc
Confidence 9999999999999999999999965
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=348.99 Aligned_cols=381 Identities=20% Similarity=0.355 Sum_probs=291.6
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
..++||+||.-+-+||.|+|...|++||||+ |.|||+|+|++|..+|+++|++.++-+..++++|+.++ .|.. .+.
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPla-NVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s-ew~~--~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLA-NVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS-EWYL--PMS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeec-CchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc-cccc--ccc
Confidence 4689999999999999999999999999998 67999999999999999999999999999999999983 2221 111
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHH-HhhhcCcceEEEEeCCeeccccHHHHHHHHHhc-----CCcEEEEEEe
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLW-LFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALP 241 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~-~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~ 241 (521)
-.+..+-.. + ....+|++|.... .+ ..++|++++||++.+++|..++++|+.+ ++.|||++.+
T Consensus 99 -~~v~ti~s~----~---~~S~GDamR~id~k~l---itgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~ 167 (673)
T KOG1461|consen 99 -FIVVTICSG----E---SRSVGDAMRDIDEKQL---ITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKE 167 (673)
T ss_pred -ceEEEEcCC----C---cCcHHHHHHHHHhcce---eecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEec
Confidence 112222111 1 2456777776542 22 3589999999999999999999999653 3558888877
Q ss_pred cCcccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC--
Q 009971 242 MDEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-- 318 (521)
Q Consensus 242 ~~~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-- 318 (521)
.......+--++.+|. +.+++.|.+.... .....++.++|...++ ...+.++.+++|-+|+++++. ++.++|+
T Consensus 168 ~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~~-v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq 243 (673)
T KOG1461|consen 168 SSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSNDE-VEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ 243 (673)
T ss_pred cccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCCc-EEEEccCCCceeeEecHhHHH-Hhhhcccce
Confidence 5311122333456665 4788888752211 1245566777766644 456789999999999999997 7777776
Q ss_pred CCCChhhcchHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhcccCC----CCCccccccC-CCcccCCCCc-CCC
Q 009971 319 GANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKP----IPDFRYFYDR-SAPIYTQPRY-LPP 390 (521)
Q Consensus 319 ~~~d~~~dil~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~~~----~~~~~~~~~~-~~~i~~~~~~-~~~ 390 (521)
.+.||...+|-.-+- |++|+++..+. |..++.+++.|...++.++.|| +|+.. +.+. .......-.+ .+.
T Consensus 244 ~r~DfV~GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~-~~~~q~~~~~r~~IYk~~d 321 (673)
T KOG1461|consen 244 TRDDFVRGVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDIN-FSGNQTFSLERRNIYKSPD 321 (673)
T ss_pred ehhhhhhhhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccccccc-CCCCceeeecccccccCcc
Confidence 567888888876554 89999999975 8999999999999999999887 34444 4331 1111111111 222
Q ss_pred ceee-cccc-cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEE
Q 009971 391 SKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI 467 (521)
Q Consensus 391 ~~i~-~~~i-~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i 467 (521)
+.+. .+.+ .+++||.|+.|+. +.|.||+||.+|+||.+|+|.++.||.+ |+||+||.|
T Consensus 322 v~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I 382 (673)
T KOG1461|consen 322 VVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRI 382 (673)
T ss_pred ceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceE
Confidence 2222 2334 5789999999998 9999999999999999999999999998 799999999
Q ss_pred eeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 468 KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 468 ~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++|+|++++.|+++|.+.. |++++.+ |++|++-+++.+|+|
T Consensus 383 ~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 383 DHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 9999999999999999976 7999999 999999999998765
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=349.28 Aligned_cols=386 Identities=21% Similarity=0.263 Sum_probs=268.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+++|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 468999999999999984 799999999987 999999999999999999999999998888887542
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+.++. + . +..|+++++++++.++++. .++|++++||. ++ +.++.++++.|++.+++.++++.+.+
T Consensus 67 ---~~~~~--~--~---~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~-- 133 (458)
T PRK14354 67 ---SEFAL--Q--E---EQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE-- 133 (458)
T ss_pred ---cEEEE--c--C---CCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--
Confidence 11221 1 1 1389999999999888531 36799999997 44 56799999999888888888877654
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d 322 (521)
++..|+.+..|++++|..+.|||.....+ ...+++++|+|+|+++.|.+.+++.... ...
T Consensus 134 ~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 134 NPTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred CCCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 34568888888889999999987421110 0135899999999998665565432221 223
Q ss_pred hhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+++++.+++.+.++++|.++++ |+++++++||..|+..+..+. .|+.. ++.+...|+..+.+.
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~-~i~~~~~ig~~~~i~ 275 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPEST-YIDADVEIGSDTVIE 275 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeE-EECCCcEECCCCEEe
Confidence 357889989887889999999875 568889999998876432111 01111 233333344444444
Q ss_pred CCceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-cccccc
Q 009971 389 PPSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAA 453 (521)
Q Consensus 389 ~~~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~ 453 (521)
+++.+. ++.|.+++||++|.|+++.+.+++||.+|.||++|.|. ++++.++......+. .++.++
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~ 355 (458)
T PRK14354 276 PGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIG 355 (458)
T ss_pred CCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEEC
Confidence 333322 33445566777777766666677888888888877777 344433322221111 344555
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+++ .|++.+.+.+++|+++|.||.++.+.+.++..+ ..+++++++|+.+. ++||++++||+|++|
T Consensus 356 ~~~---~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 356 EGT---KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred CCC---EecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 555 566666677788889999999988877554433 23455555555442 789999999999875
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=344.58 Aligned_cols=376 Identities=20% Similarity=0.248 Sum_probs=253.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+...
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 799999999987 99999999999974 899999999888888887641
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.++. + . ..+|++++++.++.+++. .++|++++||+ +.+.++.++++.|+++++++|+++.+.+ ++
T Consensus 64 -~~~~~--~--~---~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~ 131 (448)
T PRK14357 64 -VKIFL--Q--E---EQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DP 131 (448)
T ss_pred -cEEEe--c--C---CCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CC
Confidence 22221 1 1 137999999999988853 47899999998 5567899999999988999999888765 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..| ++++ .+.||+..+... ...+++++|+|+|++++|.+++++.... ...+.
T Consensus 132 ~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~ 192 (448)
T PRK14357 132 TGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL 192 (448)
T ss_pred CCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH
Confidence 679998887 6788 777766432110 0125899999999999987766542221 11234
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccC--------C----CCCccccccCCCcccCCCCcCCC
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKK--------P----IPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~--------~----~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
.|+++.+ .++++|.+.++ |.+++++++|..+...+... . .|... ++++.+.|...+.+.|+
T Consensus 193 ~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~Ig~~~~i~~~ 267 (448)
T PRK14357 193 TDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTT-YIHYDVEIGMDTIIYPM 267 (448)
T ss_pred HHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcE-EEccceEECCCcEEcCC
Confidence 5777666 24888888888 67788999988776544211 0 01111 34445555555555554
Q ss_pred ceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcc-eEEECCcccccccc-ccccccCC
Q 009971 391 SKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKG 455 (521)
Q Consensus 391 ~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~-s~i~~~~~~e~~~~-~~~~~~~~ 455 (521)
+.+. ++.+.+++||++|.|..+.+.+++||.++.||++++|.. +++.++......+. .++.|+++
T Consensus 268 ~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~ 347 (448)
T PRK14357 268 TFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN 347 (448)
T ss_pred cEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC
Confidence 4432 233344555555555444555666666666666666643 33333322111111 23344444
Q ss_pred CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 456 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 456 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+ .+++.+.+.+++||++|.||+++.+.+.+...+ .++++++++|+.+. ++||+++.|++|++|
T Consensus 348 ~---~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 348 T---KAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred c---CccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 4 445555566788888888888888876554333 24566666666552 788999999999875
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.34 Aligned_cols=381 Identities=18% Similarity=0.242 Sum_probs=266.2
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 789999999987 9999999999999999999999998888888886511
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++. +. +..|++++++.++.++++. .+++++++||. +.+.++.++++.|++.+++++++..+.+ ++
T Consensus 67 ~i~~v~--~~-----~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~ 136 (450)
T PRK14360 67 GLEFVE--QQ-----PQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--NP 136 (450)
T ss_pred CeEEEE--eC-----CcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--CC
Confidence 133432 11 1378999999998887632 35799999999 4457799999999988888888776654 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..|++|+|.++.|||.....+ ..++++++|+|+|+++.|.+++++..+. ...+.
T Consensus 137 ~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 137 KGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred CCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 569999898889999999998642111 1135899999999999888777643322 22345
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC-----CCCccccccC-------------------C
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP-----IPDFRYFYDR-------------------S 378 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~-----~~~~~~~~~~-------------------~ 378 (521)
++.++.+.+ +..+.+.++ |..+++++++..+...+.... .+... ++++ .
T Consensus 200 td~i~~~~~----~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~-~i~~~~~~i~~~~~ig~~~~i~~~ 274 (450)
T PRK14360 200 TDTVSLLDP----VMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT-FIDPASCTISETVELGPDVIIEPQ 274 (450)
T ss_pred HHHHHHHhh----ceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE-EecCCeEEEeCCEEECCCCEECCC
Confidence 677776643 556666665 567999999988766542211 00001 1222 1
Q ss_pred CcccCCCCcCCCceee-cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-ccccccCC
Q 009971 379 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKG 455 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~~~ 455 (521)
+.|...+.+++++.+. ++.|.+++|+++|.|+.+.+.+++||++|.|+++|+|. ++++.++......+. .++.++++
T Consensus 275 ~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~ 354 (450)
T PRK14360 275 THLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG 354 (450)
T ss_pred CEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC
Confidence 2222233333444442 44456667777777755666778888888888888887 455554433322222 34555555
Q ss_pred CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 456 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 456 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+ .|++++++.+++|+++|.||.++++.+.++ +++++++|.++.|..+ ++||++++|++|++|
T Consensus 355 ~---~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 355 S---KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred c---EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 5 566666777789999999999999876444 4444455555555555 889999999998875
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=312.53 Aligned_cols=360 Identities=22% Similarity=0.343 Sum_probs=259.9
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGG 164 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~ 164 (521)
.|.+++|||+|||.||||..++...|||||||+ ++|||+|+|++|.+.||++|+|++... ...|+..|...+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIg-n~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~-- 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIG-NKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKK-- 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccC-CcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccc--
Confidence 356899999999999999999999999999996 569999999999999999999999864 3567777766554322
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
...++++-...++ ..||+++|+.....++. +|||++.||.+++.++..+++.++..++...+++.....
T Consensus 83 --~~~~v~ip~~~~~------d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s 151 (433)
T KOG1462|consen 83 --RPDYVEIPTDDNS------DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS 151 (433)
T ss_pred --cccEEEeeccccc------ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc
Confidence 2234554332221 28999999999888873 799999999999999999999999888775555443211
Q ss_pred ---------ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 245 ---------KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 245 ---------~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+....+.++.++++..-+.|.... ......+.+..++|+.+|... ..+.+.++++|+|+.++++ ++.+
T Consensus 152 ~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d-~l~~ 228 (433)
T KOG1462|consen 152 EVPIPGQKGKKKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID-LLSE 228 (433)
T ss_pred cccccCcccccccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH-HHhc
Confidence 112345566676664334443222 122235677788888777644 4567999999999999986 6653
Q ss_pred hCCCCCChhhcchHhhhhCC--------------------------------ceEEEEEec--ceEEecCCHHHHHHHhh
Q 009971 316 KFPGANDFGSEVIPGATSIG--------------------------------MRVQAYLYD--GYWEDIGTIEAFYNANL 361 (521)
Q Consensus 316 ~~~~~~d~~~dil~~li~~~--------------------------------~~I~~~~~~--g~w~dIgt~edy~~An~ 361 (521)
. +...+|-.+++|.+++.+ .++++|... ..+.+++|+-.|+++|+
T Consensus 229 ~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~ 307 (433)
T KOG1462|consen 229 K-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINR 307 (433)
T ss_pred C-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhH
Confidence 2 222334455555554432 345555553 45889999999999995
Q ss_pred --hcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEEC
Q 009971 362 --GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 362 --~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
.+..-. + +.....+. .+.....-.+++|+++|.|++ +.|..|+||.+|.||+.|+|.+|++|+
T Consensus 308 ~k~~~~l~-~--------e~~~~k~~-----~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 308 DKKLKKLC-S--------EAKFVKNY-----VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred HHHHHHhc-c--------ccccccch-----hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 333211 1 11111110 000111124788999999997 999999999999999999999999999
Q ss_pred CccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEc
Q 009971 439 ADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 503 (521)
Q Consensus 439 ~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~ 503 (521)
+ ++||+++.|++||||.++.||+++.+.| |.||.++++.
T Consensus 374 n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n-------C~Ig~~yvVe 412 (433)
T KOG1462|consen 374 N-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN-------CIIGPGYVVE 412 (433)
T ss_pred C-------------------cEecCCcceecceecccceecCCCeeee-------eEecCCcEEc
Confidence 8 7999999999999999999999999997 4455555554
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=299.61 Aligned_cols=280 Identities=23% Similarity=0.334 Sum_probs=223.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++ ...+++++.++..|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g------- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG------- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC-------
Confidence 7999999999999999999999999999986 9999999999999999999999984 578888888865553
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
+.+-...|. + +.|-|+|+..+.+++. +++|+++.||.++..++.++++.+.++..+.++++.++++ |+
T Consensus 73 --v~itY~~Q~--~---p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d--P~ 140 (286)
T COG1209 73 --VDITYAVQP--E---PDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PS 140 (286)
T ss_pred --cceEEEecC--C---CCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC--cc
Confidence 233344452 2 3899999999998886 3799999999977669999999999988899999999874 88
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCChh-hc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFG-SE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~~-~d 326 (521)
.||++.+|++++++.+.|||+.+. ++++-+|+|+|++++|+ .++...| .+.+++ +|
T Consensus 141 rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd 198 (286)
T COG1209 141 RYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITD 198 (286)
T ss_pred cceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehH
Confidence 999999999999999999999875 57999999999999997 5554444 445554 89
Q ss_pred chHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCC
Q 009971 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~ 406 (521)
+++.++++|..+......|.|.|.||+++|++|+..+...... .......|.+++ -+++|...
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~~------------~G~~~~~~~~~~-----~~~~i~~~ 261 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSKR------------QGFKIACPEEIA-----WNGWIDGP 261 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHhh------------cCCEEeChhHEE-----EecEEech
Confidence 9999999999999999999999999999999999987652210 011112222222 24455555
Q ss_pred cEEce-eEEeeeEECCCCEECCC
Q 009971 407 CVIKN-CKIHHSVVGLRSCISEG 428 (521)
Q Consensus 407 ~~I~~-~~I~~s~ig~~~~Ig~~ 428 (521)
++|+. |.+.++.+|+...++.+
T Consensus 262 ~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 262 GLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred HhhccccchhhcCcchhhhhhhc
Confidence 55554 55556677766666554
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.56 Aligned_cols=241 Identities=34% Similarity=0.618 Sum_probs=196.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceE-EEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
||||||||.||||+|||..+||||+|++|++|||+|+|++|.++|++++ +|+++++.+.+.+|+.+.+.+++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~------- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGV------- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGTE-------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccccc-------
Confidence 7999999999999999999999999999877999999999999999995 55555778899999998654431
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcC-cceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN-VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~-~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
.++++. |. . ..||+++|++++..++... .++||+++||++++.++.++++.|+++++++++++...+.+++.
T Consensus 74 ~i~~i~--~~--~---~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
T PF00483_consen 74 KIEYIV--QP--E---PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPS 146 (248)
T ss_dssp EEEEEE--ES--S---SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGG
T ss_pred cceeee--cc--c---ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccc
Confidence 133332 21 1 2799999999999887532 24599999999999999999999999998543433333344578
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh--hhCCCCCChhhc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFPGANDFGSE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~--~~~~~~~d~~~d 326 (521)
.||++.+|++|+|++|.|||..+.. +.++++|+|+|++++|..+++ +......++..+
T Consensus 147 ~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d 206 (248)
T PF00483_consen 147 RYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTD 206 (248)
T ss_dssp GSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHH
T ss_pred cceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHH
Confidence 9999999988999999999986542 359999999999999986644 233345667799
Q ss_pred chHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhccc
Q 009971 327 VIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~ 365 (521)
+++.+++++..+.++.+++ +|.|||||++|++||+.+++
T Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 207 AIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999888899999998 79999999999999998864
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=303.85 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=189.6
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (521)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. +..
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999986 9999999999999999999999999999999997643210 000
Q ss_pred --------CcC---CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHHH
Q 009971 165 --------YKN---EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFI 225 (521)
Q Consensus 165 --------~~~---~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll 225 (521)
... ...+.+....| .+++||++++++++.++++ ++|++++||++++ .++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q-----~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li 151 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQ-----AQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMI 151 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeC-----CCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHH
Confidence 000 00112222222 2469999999999998863 6899999999886 5899999
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceeEEEeC----CCCC---eEEeeeCCChhhhhhcccccccccCCchhhccCCceee
Q 009971 226 QAHRETDADITVAALPMDEKRATAFGLMKID----EEGR---IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (521)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~~d----~~gr---V~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (521)
+.|.++++.++++ .+.. +++..||++.+| ++|+ |.++.|||..+.. ..+++++
T Consensus 152 ~~~~~~~~~~~~~-~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~ 211 (297)
T TIGR01105 152 ARFNETGRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMA 211 (297)
T ss_pred HHHHHhCCcEEEE-EEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEE
Confidence 9998777766444 3333 237799999984 4564 5899999864321 0146999
Q ss_pred EEEEEEeHHHHHHHHhhhCCC-CC-ChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 299 MGIYVISKDVMLNLLRDKFPG-AN-DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 299 ~GIyifs~~vl~~ll~~~~~~-~~-d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+|+|+|++++|. .++...+. .+ ...+|+++.+++ +.+++++.++|+|+|||+|++|.+||.++.
T Consensus 212 ~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 212 VGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 999999999987 44432221 22 235799999998 568999999999999999999999998874
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=293.77 Aligned_cols=235 Identities=21% Similarity=0.376 Sum_probs=191.8
Q ss_pred EEEEeCC--CCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 92 aVILAaG--~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... .. +
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-~~----~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-EF----N- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-cc----C-
Confidence 6999999 8999999999999999999987 999999999999 69999999999999999999986311 00 1
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
..+.++ .+ .+ ..||++++..++.+++....++|||++||++++.|+.++++.|+++++++|+++.+.+.+++.
T Consensus 74 ~~i~~~--~~--~~---~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~ 146 (257)
T cd06428 74 VPIRYL--QE--YK---PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQAS 146 (257)
T ss_pred ceEEEe--cC--Cc---cCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 112222 22 11 389999999999888543347899999999999999999999999999999998876544567
Q ss_pred ceeEEEeC-CCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---------
Q 009971 249 AFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--------- 318 (521)
Q Consensus 249 ~~g~v~~d-~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--------- 318 (521)
.||++.+| ++|+|..+.|||.... ++++++|+|+|++++|..+.+ ..+
T Consensus 147 ~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i~~-~~~~~~~e~~~~ 204 (257)
T cd06428 147 NYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTIKK-AFQSRQQEAQLG 204 (257)
T ss_pred cccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHHhh-hccccccccccc
Confidence 89999988 6789999999986432 358999999999999864432 211
Q ss_pred ---------CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 319 ---------GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 319 ---------~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
...++..++++.+++ ..++++|.++|+|.||+|+++|++||+.+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 205 DDNNREGRAEVIRLEQDVLTPLAG-SGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccceeeehhhhhhHHhc-cCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 112345799999998 55899999999999999999999999853
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=295.01 Aligned_cols=246 Identities=22% Similarity=0.300 Sum_probs=191.3
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc-----
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN----- 161 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~----- 161 (521)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|++++|.++||++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 4689999999999999999999999999999987 9999999999999999999999999999999997533210
Q ss_pred ------C---CCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHH
Q 009971 162 ------M---GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (521)
Q Consensus 162 ------~---~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (521)
+ ......+ +.+....| .+ ++||++++++++.++. .++|++++||++++ .|+.++
T Consensus 80 ~~k~~~l~~~~~~~~~~-~~i~~~~q--~~---~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~l 150 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG-VTIMNVRQ--GQ---PLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAM 150 (297)
T ss_pred cchhhhHHhhhhccCCC-ceEEEeec--CC---cCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHH
Confidence 0 0000001 22222233 12 3899999999999885 36899999999885 589999
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceeEEEeC----CCC---CeEEeeeCCChhhhhhcccccccccCCchhhccCCcee
Q 009971 225 IQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (521)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~~d----~~g---rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (521)
++.|.+++++++++ ..... ++..||++.+| ++| +|+.+.|||..+.. ..++++
T Consensus 151 i~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~ 210 (297)
T PRK10122 151 IARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEE
Confidence 99998888775444 33332 56789999986 355 78999999864321 113589
Q ss_pred eEEEEEEeHHHHHHHHhhhCCC--CCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 298 SMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 298 ~~GIyifs~~vl~~ll~~~~~~--~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
++|+|+|++++|..+.+ ..+. ...+.+++++.+++ +.++++|.++|+|+|||+|++|.+|+.++.
T Consensus 211 ~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~-~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 211 AVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHh-CCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999885543 2222 22345799999998 578999999999999999999999999983
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=284.46 Aligned_cols=232 Identities=23% Similarity=0.353 Sum_probs=192.0
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|++||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+. ... .
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~-~~~-------~ 71 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEY-EKK-------L 71 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcc-ccc-------C
Confidence 6899999999999999999999999999987 999999999999999999999999999999999752 100 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
.++++...+ ....|++++++.++..++.. .++||+++||++++.++.++++.|+++++++++++.+.+. +..
T Consensus 72 ~~~i~~~~~-----~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 143 (233)
T cd06425 72 GIKITFSIE-----TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSK 143 (233)
T ss_pred CeEEEeccC-----CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccc
Confidence 133332211 11389999999999888632 3679999999999999999999999999999999887653 568
Q ss_pred eeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcch
Q 009971 250 FGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (521)
Q Consensus 250 ~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil 328 (521)
||++.+|+ +++|+++.|||..+. ++++++|+|+|++++|..+ .. ...+...+++
T Consensus 144 ~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~~~~ 198 (233)
T cd06425 144 YGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIEKEIF 198 (233)
T ss_pred cCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---CcccchhhhH
Confidence 99999987 789999999986432 3589999999999999644 32 2233457899
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+.+++ ..++.+|+++|+|.||+|+++|++|++.++
T Consensus 199 ~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 199 PKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred HHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99988 568999999999999999999999998654
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=288.78 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=189.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecC-ChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++.+ ..+.+.+|+.++..|++.
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~-- 77 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLN-- 77 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCce--
Confidence 4679999999999999999999999999999987 999999999999999999987754 457889999875444321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCee-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
+.+. .| .. +.||++++..+.+++.+ ++++++.||.+ ++.|+.++++.|.++++++|+++.+++
T Consensus 78 -----i~y~--~q--~~---~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~- 141 (292)
T PRK15480 78 -----LQYK--VQ--PS---PDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN- 141 (292)
T ss_pred -----eEEE--EC--CC---CCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-
Confidence 2221 22 11 38999999999988853 46888899974 578999999999888888998887764
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC-CCCh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF 323 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~d~ 323 (521)
++..||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++. .++...+. +.++
T Consensus 142 -~p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~ 198 (292)
T PRK15480 142 -DPERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSARGEL 198 (292)
T ss_pred -CcccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCCCee
Confidence 467899999998899999999986442 45899999999999886 44432232 2333
Q ss_pred -hhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhcc
Q 009971 324 -GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 -~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll 364 (521)
.+++++.+++.+.....+..++ .|+|+||+++|.+|+..+.
T Consensus 199 ~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 199 EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 4799999988665445566678 4999999999999998775
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.12 Aligned_cols=231 Identities=25% Similarity=0.367 Sum_probs=184.6
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.....|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~------- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG------- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC-------
Confidence 6899999999999999999999999999875 9999999999999999999998755 478899997644332
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+++....+. ...||+++++.++.+++ .++|++++||+ +++.++.++++.|.++++++++++.+.++ +
T Consensus 73 --~~i~~~~~~-----~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (240)
T cd02538 73 --IRITYAVQP-----KPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--P 140 (240)
T ss_pred --ceEEEeeCC-----CCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--h
Confidence 222222221 13899999999998885 36899999998 45678999999998888899988877653 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCC-hhh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GAND-FGS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d-~~~ 325 (521)
..||.+.+|++|+|+.+.|||.... ..++++|+|+|++++|+ ++++..+ ...+ ...
T Consensus 141 ~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~ 198 (240)
T cd02538 141 ERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEIT 198 (240)
T ss_pred hcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhH
Confidence 6799999998899999999986432 24889999999999885 5553222 1222 346
Q ss_pred cchHhhhhCCceEEEEEec--ceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~--g~w~dIgt~edy~~An~~l 363 (521)
++++.+++.+ ++.++.++ ++|+||||+++|++||+.+
T Consensus 199 d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 199 DVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 8999998844 56666665 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=280.49 Aligned_cols=244 Identities=23% Similarity=0.314 Sum_probs=188.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccC-----CC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (521)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999987 99999999999999999999999999999999976443210 00
Q ss_pred C--------cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccc---cHHHHHHHHHhcCC
Q 009971 165 Y--------KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDA 233 (521)
Q Consensus 165 ~--------~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a 233 (521)
. ...+ +++....+ .+..||+++++.++.++++ ++|++++||+++.. ++.++++.|++.++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~~-----~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVRQ-----KEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEEc-----CCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 0 0001 12211111 2348999999999988863 68999999997653 49999999988777
Q ss_pred cEEEEEEecCcccCcceeEEEeCC----CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 234 DITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 234 diti~~~~~~~~~~~~~g~v~~d~----~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
++ +++.+.+.+++..||.+.+|+ .++|..+.|||..... .++++++|+|+|++++|
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIF 210 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHH
Confidence 64 555555544567899999985 2489999999863211 13589999999999998
Q ss_pred HHHHhhhCC-CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 310 LNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 310 ~~ll~~~~~-~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
..+.+.... ....+..++++.+++.+ ++++|+++|+|.||||+++|++||+.+.
T Consensus 211 ~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 211 DILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 755331111 12234578999999855 9999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=277.58 Aligned_cols=243 Identities=19% Similarity=0.297 Sum_probs=189.7
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhc--cCCCCcCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYKNE 168 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~~~~ 168 (521)
+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.... ++......
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999986 999999999999999999999999999999999763211 11000000
Q ss_pred CcEEEeecccCC-----CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 169 GFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 169 ~~v~vl~~~q~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
+...+......+ ..+.-++||++++++++.+++ .++||+++||++++.|+.++++.|.+.++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~-- 154 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ-- 154 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--
Confidence 000000000000 000113899999999998885 3689999999999999999999999999999887653
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
++..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|. ++.+ ...++
T Consensus 155 --~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~---~~~~~ 205 (254)
T TIGR02623 155 --PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDG---DATVW 205 (254)
T ss_pred --CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hccc---cCchh
Confidence 356799999884 6999999998532 24899999999999985 5543 23356
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
.+++++.++++ .++++|.++|+|.||||+++|.+|+..+.....|
T Consensus 206 ~~d~i~~l~~~-~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 206 EQEPLETLAQR-GELSAYEHSGFWQPMDTLRDKNYLEELWESGRAP 250 (254)
T ss_pred hhhHHHHHHhC-CCEEEEeCCCEEecCCchHHHHHHHHHHHcCCCC
Confidence 78999999984 4799999999999999999999999988766544
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=277.44 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=184.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccC-----CC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (521)
|+|||||||.||||+|+|..+||||+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999987 99999999999999999999999999999999985432210 00
Q ss_pred Cc---C----CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc-c--cHHHHHHHHHhcCCc
Q 009971 165 YK---N----EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR-M--DYERFIQAHRETDAD 234 (521)
Q Consensus 165 ~~---~----~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~-~--dl~~ll~~h~~~~ad 234 (521)
.. . .....+.... +.+..||+++++.++.++. .++|++++||+++. . ++.++++.|++++++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~-----~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVR-----QKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred HHHHHHhhhccccceEEEEe-----cCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 00 0 0001111111 1235899999999998874 37899999999765 3 799999999988888
Q ss_pred EEEEEEecCcccCcceeEEEeCC----CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHH
Q 009971 235 ITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310 (521)
Q Consensus 235 iti~~~~~~~~~~~~~g~v~~d~----~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~ 310 (521)
+ +++...+.+++..||++.+|. +++|+.+.|||..... .++++++|+|+|++++|.
T Consensus 152 i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 152 I-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred E-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHH
Confidence 6 555555544567899998862 3699999999853211 135899999999999987
Q ss_pred HHHhhhCCCC-CChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHH
Q 009971 311 NLLRDKFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (521)
Q Consensus 311 ~ll~~~~~~~-~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~A 359 (521)
.+........ ..+..++++.+++ ..++++|.++|+|.||||+++|++|
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~l~~-~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRKLLE-KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHHHHh-cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 6544222212 2345789999998 4689999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=279.17 Aligned_cols=231 Identities=25% Similarity=0.402 Sum_probs=185.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEec-CChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|+++ +..+.+.+|+.++..|++
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g~------- 72 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGV------- 72 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccCc-------
Confidence 589999999999999999999999999987 99999999999999999998886 555788899887544432
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
++....|. + +.||++++..++.++++ ++|+++.||. +++.++.++++.|.++++++|+++.+++ ++.
T Consensus 73 --~i~~~~q~--~---~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~ 140 (286)
T TIGR01207 73 --NLSYAVQP--S---PDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPE 140 (286)
T ss_pred --eEEEEEcc--C---CCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHH
Confidence 22222231 1 38999999999998863 6788889997 5678999999999888888999888765 357
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-hhc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GSE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~~d 326 (521)
.||++.+|++|+|+++.|||..+. ++++++|+|+|++++++ +++...+ ...++ .++
T Consensus 141 ~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitd 198 (286)
T TIGR01207 141 RYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITD 198 (286)
T ss_pred HCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHH
Confidence 899999998899999999986432 35899999999999876 5543333 22333 479
Q ss_pred chHhhhhCCceEEEEEe-cce-EEecCCHHHHHHHhhhcc
Q 009971 327 VIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 327 il~~li~~~~~I~~~~~-~g~-w~dIgt~edy~~An~~ll 364 (521)
+++.+++++ ++.++.+ +|+ |+|+||+++|++|+..+.
T Consensus 199 v~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 199 LNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 999998855 3555554 676 999999999999998664
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=269.01 Aligned_cols=233 Identities=25% Similarity=0.395 Sum_probs=191.8
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+..+|++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~------- 72 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGV------- 72 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCC-------
Confidence 7899999999999999999999999999987 99999999999999999999999998999999987544321
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
.+.++. + .+..|++++++.++.+++ .++|++++||++++.++.++++.|.++++++++++.+.++ +..
T Consensus 73 ~i~~~~--~-----~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (236)
T cd04189 73 RITYIL--Q-----EEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRR 140 (236)
T ss_pred eEEEEE--C-----CCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--ccc
Confidence 122321 1 124799999999998875 3689999999999999999999999989999888887643 467
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC--CCChhhcc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~d~~~di 327 (521)
|+.+.+|+ ++|..+.|||..+. +.+.++|+|+|++++|..+ ....+. ...+..++
T Consensus 141 ~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~ 197 (236)
T cd04189 141 FGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDA 197 (236)
T ss_pred ceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHH
Confidence 88888874 59999999975332 2488999999999998744 322221 12234789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
++.+++.+.+|++++++++|.||||+++|.+||+.+++
T Consensus 198 ~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 198 IQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999878899999999999999999999999998764
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=275.25 Aligned_cols=244 Identities=23% Similarity=0.318 Sum_probs=191.2
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~ 165 (521)
+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.+.|+ +..+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999987 9999999999999999999999999999999998654432 1000
Q ss_pred cCC----C-------cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHHHH
Q 009971 166 KNE----G-------FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFIQ 226 (521)
Q Consensus 166 ~~~----~-------~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll~ 226 (521)
... + ...+....| ....||+++++.++.++. +++|++++||++++ .|+.++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-----~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~ 157 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIR 157 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-----CCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHH
Confidence 000 0 011111112 224899999999988775 36899999999764 78999999
Q ss_pred HHHhcCCcEEEEEEecCcccCcceeEEEeCC-------CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeE
Q 009971 227 AHRETDADITVAALPMDEKRATAFGLMKIDE-------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (521)
Q Consensus 227 ~h~~~~aditi~~~~~~~~~~~~~g~v~~d~-------~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (521)
.|.+++++ ++++.+.+ ++..||++..|+ +++|..+.|||..... .++++++
T Consensus 158 ~h~~~~~~-tl~~~~~~--~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~ 215 (302)
T PRK13389 158 RFDETGHS-QIMVEPVA--DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIV 215 (302)
T ss_pred HHHhcCCC-EEEEEEcc--cCCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEE
Confidence 99888876 67776653 467899998863 3579999999974211 1358999
Q ss_pred EEEEEeHHHHHHHHhhhCC--CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 300 GIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 300 GIyifs~~vl~~ll~~~~~--~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
|+|+|++++|. +++...+ ....+.+|+++.+++ +.++++|.++|+|+|||||++|.+|+..+.
T Consensus 216 GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 216 GRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred EEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 99999999985 6654332 223456899999998 568999999999999999999999999874
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=268.69 Aligned_cols=244 Identities=18% Similarity=0.281 Sum_probs=191.0
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCCCcCCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGYKNEG 169 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 169 (521)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+..... +......+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999986 9999999999999999999999999999999998743211 11011111
Q ss_pred cEEEeecccCC-----CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 170 FVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 170 ~v~vl~~~q~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++.....+ ....-.+||++++++++.++.+ .++|++++||++++.|+.++++.|..+++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12222210000 0000126799999999988752 2689999999999999999999999999999887653
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
+...||.+.+|++|+|..+.|||..+ +.++++|+|+|++++++. +... ..++.
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~ 207 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFE 207 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhh
Confidence 24678999999889999999998643 137899999999999864 4322 44566
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
+++++.+++. .++++|.++|+|.||+|+++|..|+..+.....|
T Consensus 208 ~d~l~~li~~-~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~~~ 251 (253)
T cd02524 208 REPLERLAKD-GELMAYKHTGFWQCMDTLRDKQTLEELWNSGKAP 251 (253)
T ss_pred HHHHHHHHhc-CCEEEEecCCEEEeCcCHHHHHHHHHHHHcCCCC
Confidence 8999999985 4899999999999999999999999888665443
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.22 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=179.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ ..|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~--------- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFG--------- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCC---------
Confidence 589999999999999999999999999987 99999999999999999999999999999999986 2232
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHH--hcCCcEEEEEEecCcccCc
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR--ETDADITVAALPMDEKRAT 248 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~--~~~aditi~~~~~~~~~~~ 248 (521)
+.+....+ +.+..||+++++.++..+++ ++|++++||++++.|+.++++.|. +.++++++...+.+ ...
T Consensus 70 ~~i~~~~~----~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (221)
T cd06422 70 LRITISDE----PDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHN 140 (221)
T ss_pred ceEEEecC----CCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCC
Confidence 22222222 11247999999999988853 689999999999999999999998 45566666655543 356
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcch
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil 328 (521)
.||.+.+|++++|..+.+||.. +++++|+|+|++++|..+.+. ....++++
T Consensus 141 ~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~ 191 (221)
T cd06422 141 GVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLW 191 (221)
T ss_pred CcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHH
Confidence 7899999988999999888742 388999999999998754331 23357899
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHH
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~A 359 (521)
+.+++ ..++.+|.++++|.||+|+++|.+|
T Consensus 192 ~~l~~-~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 192 DRAIA-AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHH-cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99998 4589999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=257.46 Aligned_cols=223 Identities=27% Similarity=0.499 Sum_probs=183.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.++. . +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~------~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGI------R-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCc------e-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999876332211 1 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.+.. .+ + ..|+++++..++..++ .++|++++||++++.++.++++.|++.+.++++++.+.+. ...|+
T Consensus 73 ~~~~-~~---~---~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 140 (223)
T cd06915 73 YYVI-EP---E---PLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYG 140 (223)
T ss_pred EEEE-CC---C---CCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcce
Confidence 1211 11 1 3899999999988774 4789999999999889999999998888888888877543 45788
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
.+.+|++|+|..+.+||.... ++++++|+|+|++++|..+... ..++.+++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l 195 (223)
T cd06915 141 NVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPAL 195 (223)
T ss_pred eEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHH
Confidence 888988899999999876431 3588999999999998743221 234567899999
Q ss_pred hhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
++.+ ++.+|+++++|.||||++||..|+
T Consensus 196 ~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 196 VKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 9755 999999999999999999999874
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-31 Score=252.75 Aligned_cols=217 Identities=29% Similarity=0.526 Sum_probs=181.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-------~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGV-------NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCc-------eE
Confidence 69999999999999999999999999986 99999999999999999999999988999999887432221 12
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++. +. ...|++++++.++..+. .++|++++||++++.|+.++++.|.++++++++++.+.+ ++..|+
T Consensus 73 ~~~~--~~-----~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 140 (217)
T cd04181 73 EYVV--QE-----EPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYG 140 (217)
T ss_pred EEEe--CC-----CCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 21 13799999999998772 479999999999999999999999999999999888765 467899
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
.+.+|++|+|..+.|||.... .+++++|+|+|++++++ ++++......++..++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l 198 (217)
T cd04181 141 VVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLL 198 (217)
T ss_pred EEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHH
Confidence 999998899999999986532 25899999999999885 55543333456678999999
Q ss_pred hhCCceEEEEEecceEEecC
Q 009971 332 TSIGMRVQAYLYDGYWEDIG 351 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIg 351 (521)
++ ..++++|+++|+|.|||
T Consensus 199 ~~-~~~v~~~~~~g~w~dig 217 (217)
T cd04181 199 IE-EGKVYGYPVDGYWLDIG 217 (217)
T ss_pred Hh-cCCEEEEEcCCEEecCC
Confidence 98 48999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-31 Score=253.41 Aligned_cols=220 Identities=25% Similarity=0.450 Sum_probs=178.8
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.+.|+++|+|++++..+++.+|+.+...+++ . +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~------~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGV------N-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCc------c-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999886433221 1 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++. + ....||++++..+.... .++|++++||++++.++..+++.|+++++++++++.+.. ....||
T Consensus 73 ~~~~--~-----~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g 139 (220)
T cd06426 73 SYVR--E-----DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYG 139 (220)
T ss_pred EEEE--C-----CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 1 11378999987665433 478999999999999999999999998888888887643 235689
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
++..|+ ++|.++.|||... .++++|+|+|+++++.. +++ .......++++.+
T Consensus 140 ~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~~~~~~ 191 (220)
T cd06426 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPDLIEKL 191 (220)
T ss_pred EEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHHHHHHH
Confidence 988885 8999999987532 37899999999999864 331 1222257889999
Q ss_pred hhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
++.+.++.+|+++++|.||||+++|.+||
T Consensus 192 i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 192 IKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88788899999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=243.86 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=202.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (521)
++-.+|||+|||.||||-|.|+..||-||||-++ |+|+|+++.+.++||++|++||+.++..|.+|+...+.+. +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 5678999999999999999999999999999875 9999999999999999999999999999999998765332 000
Q ss_pred CcC----------CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccc---cHHHHHHHHHhc
Q 009971 165 YKN----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRET 231 (521)
Q Consensus 165 ~~~----------~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~ 231 (521)
+-+ ...+.+....|. + ++|.++|+.+|..++.+ ++|.|+.+|.++.. -+.++++.+.+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~--e---~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK--E---PLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC--C---CCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 000 112344444452 2 48999999999999874 79999999997764 289999999998
Q ss_pred CCcEEEEEEecCcccCcceeEEE----eCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeH
Q 009971 232 DADITVAALPMDEKRATAFGLMK----IDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (521)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~----~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~ 306 (521)
+.+ ++.+.+++.++.+.||++. ++.+ .+|..+.|||+.... .|+++-.|-|+|+|
T Consensus 153 g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p 212 (291)
T COG1210 153 GGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTP 212 (291)
T ss_pred CCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCH
Confidence 876 4777778777889999997 4333 589999999976643 36899999999999
Q ss_pred HHHHHHHhhhCCCC-CC-hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 307 DVMLNLLRDKFPGA-ND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 307 ~vl~~ll~~~~~~~-~d-~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
++|. +|++..++. ++ ..+|.+..+++ ...+++|.++|.-+|+|+...|.+|+..+..+
T Consensus 213 ~IFd-~L~~~~~G~ggEiQLTDai~~L~~-~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 213 EIFD-ILEETKPGAGGEIQLTDAIKKLLK-KEPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred HHHH-HHhhCCCCCCCEeeHHHHHHHHHh-hCcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 9997 666544432 22 35899999998 58999999999999999999999999988654
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=245.36 Aligned_cols=205 Identities=19% Similarity=0.310 Sum_probs=160.2
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.|+... +..
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~--~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKS--SLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccccc--Ccc
Confidence 5899999999999999999999999999986 9999999999999999999999999999999999865554211 001
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHH--HHhhhcCcceEEEEeCCeeccccHHHHHHHHHhc-----CCcEEEEEEec
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYL--WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALPM 242 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~--~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~~ 242 (521)
.+.++. + .+ ..|++++++... ..+ .++||+++||++++.|+.++++.|+++ ++++|+++.+.
T Consensus 78 ~i~~~~--~--~~---~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 78 IVIIIM--S--ED---CRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred eEEEEe--C--CC---cCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 133221 2 11 367888886543 223 368999999999999999999999884 78899988877
Q ss_pred Cccc----CcceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 243 DEKR----ATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 243 ~~~~----~~~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
+.+. ...++++.+|++ ++|+.|.|||..+.....+++..++...+.. ..++++.++|||+|++++|
T Consensus 147 ~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 147 SPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 6433 223678888866 8999999999876554555666666665543 4567899999999999764
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=237.53 Aligned_cols=199 Identities=48% Similarity=0.832 Sum_probs=162.0
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.||||+|+|..+||+|+|++|++|||+|+++++.++|+++|+|+++++.+++.+|+.+...|++. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999998755999999999999999999999999999999999875544321 111224
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++...+. .+++|..||+++++.++..+++...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~-~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 79 FILPPQQR-KGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEeCcccC-CCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 45433321 134467999999999999886433478999999999999999999999998888887664
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC-CCCCChhhcchHh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF-PGANDFGSEVIPG 330 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~-~~~~d~~~dil~~ 330 (521)
+++|+|+|++++|.++++... ....++.+|+++.
T Consensus 147 ---------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~ 181 (200)
T cd02508 147 ---------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181 (200)
T ss_pred ---------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 257999999999876766432 2344667899999
Q ss_pred hhhCCceEEEEEecceEEec
Q 009971 331 ATSIGMRVQAYLYDGYWEDI 350 (521)
Q Consensus 331 li~~~~~I~~~~~~g~w~dI 350 (521)
+++. .++++|.++|+|.||
T Consensus 182 l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 182 MLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred Hhcc-CcEEEEEeCCeEecC
Confidence 9985 799999999999996
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=238.31 Aligned_cols=223 Identities=21% Similarity=0.229 Sum_probs=168.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
.||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|++++++++++.. ....++.+.+... . . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~---~-~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL---A-P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh---C-C--CC
Confidence 48999999999999999999999999986 99999999999999999999986332 2222332211100 0 0 12
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++.... . ..||+++++.++..+.. .++|++++||++++.++.++++.|.+.+.+.++++.+. ....|+
T Consensus 73 ~i~~~~~---~---~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 141 (231)
T cd04183 73 TVVELDG---E---TLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWS 141 (231)
T ss_pred EEEEeCC---C---CCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeE
Confidence 2221111 1 38999999999987742 36899999999999999999998887777777766654 234799
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHH-HHHHHHhhh----CCCCC-Chhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRDK----FPGAN-DFGS 325 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~ll~~~----~~~~~-d~~~ 325 (521)
.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+++++. ..... .+.+
T Consensus 142 ~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (231)
T cd04183 142 YVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYIS 198 (231)
T ss_pred EEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEh
Confidence 9999989999999887431 23789999999987 555555431 11122 3457
Q ss_pred cchHhhhhCCceEEEEEe-cceEEecCCHHHH
Q 009971 326 EVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 356 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~-~g~w~dIgt~edy 356 (521)
++++.+++.+.+|+++.+ +++|.||||+++|
T Consensus 199 d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 199 PLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 899999987889999999 6899999999997
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.62 Aligned_cols=223 Identities=18% Similarity=0.267 Sum_probs=170.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... . + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--~--------~-~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--P--------N-I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--C--------C-e
Confidence 69999999999999999999999999986 999999999999999999999999999999998752 1 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++...+ .+ ..|+++++..++.++. ++||+++||++++. ++++.|.++++++++++.+........++
T Consensus 69 ~~~~~~~--~~---~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (229)
T cd02523 69 KFVYNPD--YA---ETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYV 136 (229)
T ss_pred EEEeCcc--hh---hhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccce
Confidence 3332211 01 3899999999988773 68999999999865 46677777888888888764333334455
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh---hCC--CCCChhhc
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFP--GANDFGSE 326 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~~~--~~~d~~~d 326 (521)
....| +++++.+.+|+..+.. ..+.++|+|+|+++++..+.+. ..+ ...++.++
T Consensus 137 ~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 137 KDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred eeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 44333 3789999988754321 2488999999999998755331 111 23456689
Q ss_pred chHhhhh-CCceEEEEEecceEEecCCHHHHHHHh
Q 009971 327 VIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 327 il~~li~-~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+++.+++ .+.+++.+.. ++|.||||++||++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987 3555666655 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=231.21 Aligned_cols=234 Identities=24% Similarity=0.333 Sum_probs=170.7
Q ss_pred EEEEEEeCCCCCCCCcccc-CCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~-~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
|++||||||.||||+|||+ .+||+|+|++|.+|||+|+++++.+. ++++|+|++++.. +.+.+++.+ ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~~------- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-GL------- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-cC-------
Confidence 6899999999999999996 79999999998559999999999998 4999999999755 445566654 00
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-CcceEEEEeCCeecc--ccHHHHHHHHHh---cCCcEEEEEE
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYR--MDYERFIQAHRE---TDADITVAAL 240 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~--~dl~~ll~~h~~---~~aditi~~~ 240 (521)
..+.++.. +. ..||++++..++..+... .++.+|+++||+++. .++.++++.+.+ .++.+|+.+.
T Consensus 73 --~~~~ii~e---p~----~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~ 143 (274)
T cd02509 73 --PEENIILE---PE----GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIK 143 (274)
T ss_pred --CCceEEEC---CC----CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 01233321 11 279999999998877642 356899999999775 557777765543 5677888877
Q ss_pred ecCcccCcceeEEEeCCCC-----CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 241 PMDEKRATAFGLMKIDEEG-----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g-----rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+.. +.+.||++..+++. +|..|.|||+....+.+ .....+++++|+|+|+++.|.+.++.
T Consensus 144 p~~--~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 144 PTR--PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred ecC--CCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHHHHHH
Confidence 653 35789999998653 89999999987654322 11235799999999999888777765
Q ss_pred hCCCC-------------CC---hhhcchHh---------hhhCCceEEEEEecceEEecCCHHH
Q 009971 316 KFPGA-------------ND---FGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEA 355 (521)
Q Consensus 316 ~~~~~-------------~d---~~~dil~~---------li~~~~~I~~~~~~g~w~dIgt~ed 355 (521)
..|.. .+ +..+.++. ++++..++.+++.+..|-|+|++++
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 209 HAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 44311 01 11233332 3444667899999999999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=214.69 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=173.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+ +. +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~~-----------~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-PN-----------V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-CC-----------c
Confidence 69999999999996 689999999987 99999999999999999999999888888888765 11 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
+++... + ..|+++++++++..++. ..++|++++||+ ++ ..++.++++.|.+.++++++.+.+.+ ++..
T Consensus 65 ~~~~~~----~---~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~p~~ 134 (229)
T cd02540 65 EFVLQE----E---QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTG 134 (229)
T ss_pred EEEECC----C---CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCC
Confidence 232211 1 27999999999988853 247899999999 44 46799999999887788877776654 3567
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCChhhc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~~~d 326 (521)
|+.+..|++|+|..+.||+...... ...+++++|+|+|+++.|.++++.... ....+.++
T Consensus 135 ~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 135 YGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 8888888779999999987532110 012488999999998877666664322 23445689
Q ss_pred chHhhhhCCceEEEEEecce--EEecCCHHHH
Q 009971 327 VIPGATSIGMRVQAYLYDGY--WEDIGTIEAF 356 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~--w~dIgt~edy 356 (521)
+++.+++.+.+|+++.++|| |+.|+|+.++
T Consensus 198 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 198 IIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99999987889999999865 7888998864
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=220.46 Aligned_cols=204 Identities=19% Similarity=0.313 Sum_probs=156.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.+... .+ .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~--~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLS--SK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccccc--CC-c
Confidence 5899999999999999999999999999986 999999999999999999999999999999999875432110 01 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHH--HHhcCCcEEEEEEecCcc--
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA--HRETDADITVAALPMDEK-- 245 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~--h~~~~aditi~~~~~~~~-- 245 (521)
.+.++...+ ....||++++++++..+. ++|++++||++++.|+..++++ +..+++++++.+......
T Consensus 77 ~v~~~~~~~-----~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 147 (216)
T cd02507 77 IVDVITSDL-----CESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVS 147 (216)
T ss_pred eEEEEEccC-----CCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCC
Confidence 133332222 124899999999987774 6899999999999999999976 555566666665544322
Q ss_pred -----cCcceeEEEeCCC---CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 246 -----RATAFGLMKIDEE---GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 246 -----~~~~~g~v~~d~~---grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
....++++.+|++ .+++.+.+++... ..+.++..++...++ ...++++.++|||+|+++++
T Consensus 148 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 2556889999887 5788887777543 233456777777765 35568899999999998763
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=211.58 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=153.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++.. +.+++++.+. .+.. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~-~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSF-PLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhc-cccc----Cc
Confidence 6899999999999999999999999999976 99999999999999999999999765 5677777652 1111 01
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc----
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE---- 244 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~---- 244 (521)
....+. ..+ ....||+++++.++..+. ++|++++||.+++.++..+++.|+++++.+|+++.+...
T Consensus 75 ~~~~~~-~~~-----~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~ 144 (214)
T cd04198 75 KLDEVT-IVL-----DEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ 144 (214)
T ss_pred ceeEEE-ecC-----CCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc
Confidence 111111 111 124899999999987663 689999999999999999999999999999999887532
Q ss_pred -------ccCcceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 245 -------KRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 245 -------~~~~~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
.....+.++.+|++ ++++.+....+. .+.+.++..+|...|+. ..++++.++|||+|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 145 KGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 11234667777765 789888754322 23455677888877653 5568899999999998763
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=226.21 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=168.6
Q ss_pred EEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChH-HHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (521)
|.+||||||.||||+|||.. +||+|+|+.|++|||+|+++.|...++++++|+++.... .+.+.+.. +..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~~~------- 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-IGK------- 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-cCC-------
Confidence 57999999999999999997 899999998756999999999999999999999975442 44455543 110
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc--CcceEEEEeCCeecc--ccHHHHHHHH---HhcCCcEEEEEE
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLYR--MDYERFIQAH---RETDADITVAAL 240 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~l~~--~dl~~ll~~h---~~~~aditi~~~ 240 (521)
....++.. +. ..||+.++..+...+... .++.+|+++||+++. .+|.++++.+ .+.++.+|+...
T Consensus 73 -~~~~~i~E---p~----~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 73 -LASNIILE---PV----GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred -CcceEEec---cc----ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 10112211 11 279999998877666321 234699999998654 3488888865 344555666665
Q ss_pred ecCcccCcceeEEEeCC------CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 241 PMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~------~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+. .+.+.||++..++ .++|..|.|||+....+.+ .....+++|+|||+|+++.|.+.+.
T Consensus 145 p~--~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 145 PT--HPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred CC--CCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHH
Confidence 43 3457899999873 2589999999987554321 1223579999999999777666555
Q ss_pred hhCCCC-----------------CChhhcchH---------hhhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 315 DKFPGA-----------------NDFGSEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 315 ~~~~~~-----------------~d~~~dil~---------~li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+..|+. ..+..++++ .++++..++++++.+..|-|+|++++|+++-
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 210 KHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 433310 011134444 3355567899999999999999999998874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=202.28 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=161.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++|+|+++ .+.+.+++.+ +.
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~~-------- 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-FG-------- 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-cC--------
Confidence 46889999999999995 5999999987 99999999999999999999885 3567777654 11
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc-
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE- 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~- 244 (521)
+.++...+ .++.|++... .+...++....+.+|+++||+ +++ .++.++++.|..++.++++++.+..+
T Consensus 63 ---~~v~~~~~-----~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~ 133 (245)
T PRK05450 63 ---GEVVMTSP-----DHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDA 133 (245)
T ss_pred ---CEEEECCC-----cCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCH
Confidence 22322211 1236776533 344333211246799999999 665 55999999988777777776665522
Q ss_pred ---ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 245 ---~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
.++..++++ +|++|+|+.|.|||..+....- + .-...+++.++|||+|+++++..+.+. .+...
T Consensus 134 ~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~-~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~ 200 (245)
T PRK05450 134 EEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------A-DSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPL 200 (245)
T ss_pred HHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------c-cccCccccEEEEEEecCHHHHHHHHhC-CCCcc
Confidence 234556655 8888999999999853321000 0 000114699999999999999866542 22111
Q ss_pred Chh--hcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 322 DFG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 322 d~~--~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
+.. .+.+ .+++.+.+++++.+++ +|.|||||+||..|+..+
T Consensus 201 ~~~~~~~~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIESLEQL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchhHHHH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 111 1122 3555689999999996 899999999999999754
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=193.83 Aligned_cols=226 Identities=17% Similarity=0.272 Sum_probs=159.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~--------- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FG--------- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cC---------
Confidence 689999999999996 6999999987 9999999999998 89999999864 667777754 11
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCcc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDEK 245 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~~ 245 (521)
++++...+ .+..||++ +..++..++. ..+.||+++||+ ++. .++..+++.|.+. +.++++++.+.++.
T Consensus 63 --~~~~~~~~-----~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (239)
T cd02517 63 --GKVVMTSP-----DHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDE 133 (239)
T ss_pred --CEEEEcCc-----ccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCH
Confidence 22322111 12367874 6666655542 136799999998 554 5699999988776 67888888775431
Q ss_pred ----cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 246 ----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 246 ----~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
+...++ +..|++|+|+.|.+++.....+ +. .....++++|+|+|+++++..+... .. .
T Consensus 134 ~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~-~~--~ 195 (239)
T cd02517 134 EELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL-PP--S 195 (239)
T ss_pred HHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC-CC--c
Confidence 122333 4567779999998765422100 00 0013589999999999999866542 11 1
Q ss_pred Ch-hhcchH--hhhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 322 DF-GSEVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 322 d~-~~dil~--~li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
++ ..+.++ .+++.+.+++++..+++|.||||++||.+|++
T Consensus 196 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 196 PLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 12 123333 35666888999999999999999999999985
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=191.24 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=149.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEe-cCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~-~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+.|+|||||||.|+||+| ..||||+.++|+ +||+|+|++|.+.|++++++|+ ++..+.+++++.+ +++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCcc----
Confidence 4569999999999999998 899999999976 9999999999999999999999 8888888888887 3321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~ 244 (521)
..++.- ..++. .+|+.++..+++.+. +.|++++||++|... ++.+++. .+. ++.+...+.
T Consensus 72 -----~~iv~N-~~y~k----tN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a----~~~-~li~d~~~~ 132 (239)
T COG1213 72 -----AKIVIN-SDYEK----TNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEA----PGE-GLIVDRRPR 132 (239)
T ss_pred -----eEEEeC-CCccc----CCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEEecccc
Confidence 223321 11111 456899999988775 579999999999877 5555442 222 233322211
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh-
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF- 323 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~- 323 (521)
.....-.....+++|++..+..+-.. .+..++|++.|+++++....+. ......+
T Consensus 133 ~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~-~~e~~~~~ 188 (239)
T COG1213 133 YVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYEL-LVERSEYD 188 (239)
T ss_pred ccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHH-HhhhhhHH
Confidence 11111122344578999999865442 2478999999999987644331 1111111
Q ss_pred hhcchHhhhhCCceEEEEE--e-cceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYL--Y-DGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~--~-~g~w~dIgt~edy~~An~~ll~ 365 (521)
..++.... +.+..-+. + ...|+||+||||+.+|.+.+..
T Consensus 189 ~~~~~~~~---~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 189 YREVEKEA---GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred HHHHHHHh---CCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 12222221 22222222 2 2469999999999999987653
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=186.41 Aligned_cols=226 Identities=16% Similarity=0.277 Sum_probs=154.9
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 5789999999999995 4999999987 9999999999998 89999999853 667777764 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCC-cEEEEEEecCc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDA-DITVAALPMDE 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a-diti~~~~~~~ 244 (521)
++++...+ .+..|++ .+..++..++ .+.|++++||+ +. ..++.++++.|.+.+. ++++++.+.+.
T Consensus 64 ---~~v~~~~~-----~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PRK13368 64 ---GKVVMTSD-----DHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST 131 (238)
T ss_pred ---CeEEecCc-----cCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC
Confidence 12221111 1135666 4666665542 47899999998 44 5679999999876543 55555654432
Q ss_pred c----cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 245 ~----~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
. ++..+++ .++++|+++.+.++|.....+. ....++.++|+|+|++++|..+ .......
T Consensus 132 ~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~~~~~~ 194 (238)
T PRK13368 132 EEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQLPETP 194 (238)
T ss_pred HHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-HcCCCCh
Confidence 1 1334444 4456789999987652211000 0013589999999999999853 3211111
Q ss_pred C-Chhh-cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh
Q 009971 321 N-DFGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 321 ~-d~~~-dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ 362 (521)
. .+.. +++ .+++.+.+++++..+++|+||||++||..|+..
T Consensus 195 ~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 195 LEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred hhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1 1222 555 565558889999988999999999999999863
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=198.86 Aligned_cols=242 Identities=19% Similarity=0.310 Sum_probs=166.1
Q ss_pred ccEEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (521)
|+|.+||||||.||||+|+|.. .||+|+|+.|++|||+++++++...++.+.+|+++... ..+++.+.. .+.
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~~~----- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-LNK----- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-cCC-----
Confidence 3589999999999999999998 79999999876799999999999988888888887654 345555544 110
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-C--cceEEEEeCCeeccc-c-HHHHHHHHH---hcCCcEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-N--VLEFLVLAGDHLYRM-D-YERFIQAHR---ETDADITV 237 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~--~~~~Lvl~gD~l~~~-d-l~~ll~~h~---~~~aditi 237 (521)
. .. .++. .|.. .+|+.++..+...+... . +.-++++++|+++.. + |.+.+.... +.+..+|+
T Consensus 78 ~-~~--~ii~---EP~~----rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~ 147 (478)
T PRK15460 78 L-TE--NIIL---EPAG----RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTF 147 (478)
T ss_pred c-cc--cEEe---cCCC----CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 01 1221 1221 67999988776655443 1 356889999997653 2 555444432 23555666
Q ss_pred EEEecCcccCcceeEEEeCCC---------CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHH
Q 009971 238 AALPMDEKRATAFGLMKIDEE---------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV 308 (521)
Q Consensus 238 ~~~~~~~~~~~~~g~v~~d~~---------grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~v 308 (521)
...|. .+.+.||++..++. .+|..|.|||+....+.+- ....|+||+|+|+|+.+.
T Consensus 148 GI~Pt--~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 148 GIVPD--LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAGR 212 (478)
T ss_pred ecCCC--CCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHHH
Confidence 66553 34678999987642 2799999999988765442 334689999999999887
Q ss_pred HHHHHhhhCCCC--------------CCh--h-hcchHh---------hhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 309 MLNLLRDKFPGA--------------NDF--G-SEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 309 l~~ll~~~~~~~--------------~d~--~-~dil~~---------li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+...++++.|.. .++ . .+.++. ++++..++.+.+.+-.|-|+|++.++.+..
T Consensus 213 ~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 213 YLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 766665543310 011 0 122221 233355688889888899999999998764
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=176.28 Aligned_cols=243 Identities=23% Similarity=0.327 Sum_probs=168.1
Q ss_pred cEEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCCh-HHHHHHHHHhhhccCCCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (521)
+|++||||||.|||||||++. +||+++++.|..+|++.+++++.. .+.+++++||+... ..+.+.+.+--. .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~-----~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI-----E 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh-----c
Confidence 378999999999999999875 999999998877999999999998 67899999998665 344455554100 0
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh-hhcCcceEEEEeCCeecccc--HHHHHHHHH---hcCCcEEEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF-EEHNVLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVAA 239 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l-~~~~~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~aditi~~ 239 (521)
...+ -++. |.. ..|+.++..+.-.+ ++..+.-++++++||+.... |.+.++... +.+..+|+..
T Consensus 76 ~~~~--illE----P~g----RnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI 145 (333)
T COG0836 76 NAAG--IILE----PEG----RNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGI 145 (333)
T ss_pred cccc--eEec----cCC----CCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 0011 1322 223 56999998776444 33344569999999966532 665555432 3455566666
Q ss_pred EecCcccCcceeEEEeCCC------CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHH
Q 009971 240 LPMDEKRATAFGLMKIDEE------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (521)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~------grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (521)
.|. .+.+.||++...+. .+|.+|.|||+....+.+. ....++||+|+|+|+...+.+.+
T Consensus 146 ~Pt--~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 146 PPT--RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred CCC--CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHH
Confidence 553 34689999987542 3799999999998876442 34458999999999998776666
Q ss_pred hhhCCCC-------------CChh---hcchH---------hhhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 314 RDKFPGA-------------NDFG---SEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 314 ~~~~~~~-------------~d~~---~dil~---------~li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
+.+.|.- .++. .+.+. .+.++..++.+++.+-.|-|+|++.++++...
T Consensus 211 ~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 211 KKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 6544310 0110 11111 12344678999999989999999999987654
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=164.91 Aligned_cols=236 Identities=16% Similarity=0.191 Sum_probs=158.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.++| ..+.+.+.+++.+ +.
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~-~~-------- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG-FG-------- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH-cC--------
Confidence 46889999999999996 4999999997 999999999998765444333 3567778777754 11
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEE--EEEecC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITV--AALPMD 243 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi--~~~~~~ 243 (521)
++++...+ . +..||++. ..++..++. ..+.+++++||. +.+ ..+.++++.+.+. .++++ ++.+..
T Consensus 109 ---v~vi~~~~--~---~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~ 177 (293)
T PLN02917 109 ---ADVIMTSE--S---CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK 177 (293)
T ss_pred ---CEEEeCCc--c---cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecC
Confidence 22221111 1 12577665 577776642 246899999999 665 5599999988654 33333 333444
Q ss_pred cccCcceeEEE--eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---
Q 009971 244 EKRATAFGLMK--IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--- 318 (521)
Q Consensus 244 ~~~~~~~g~v~--~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--- 318 (521)
.+++..||.++ .|++|+++.|..++-.+..++ .+ ......+.++|||.|+.+.|. .+.....
T Consensus 178 ~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~ 244 (293)
T PLN02917 178 PEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELPPTPL 244 (293)
T ss_pred HHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCCCCcc
Confidence 45577888875 677888886664322111000 00 011235899999999999988 4432111
Q ss_pred CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 319 ~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
+..++.+++. ++++|++|.++..+....-|||++||..++..+..+
T Consensus 245 e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 245 QLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred cchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3345567776 556699999998876677999999999999877554
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=147.79 Aligned_cols=219 Identities=12% Similarity=0.186 Sum_probs=147.1
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.+.||++|+||+|+..+++ +||.+.|.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999997 99999999999999999999999998874 78888653
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
|.++....- . -.....++..++++|+ +.-++.+|.....++ ...+ ...+--.... ... ....
T Consensus 69 -vtLvyN~kY-~----~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~-~~~S~Yfav~-~~~--~tnE 130 (231)
T COG4750 69 -VTLVYNPKY-R----EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTK-ESHSKYFAVY-RSG--KTNE 130 (231)
T ss_pred -eEEEeCchH-H----hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcC-cccceEEEEE-ecC--CCce
Confidence 333321110 0 1456789999999986 467889998555442 1111 1111111112 111 1223
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH---HHHHhhhC-C--CCCCh
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM---LNLLRDKF-P--GANDF 323 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl---~~ll~~~~-~--~~~d~ 323 (521)
| .+..+.+|+|+.+.--.. .....+|+-.|+.+.- ..+++... . ...-+
T Consensus 131 w-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~y 185 (231)
T COG4750 131 W-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLY 185 (231)
T ss_pred e-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHH
Confidence 3 456778899999863211 2377789999996543 33444321 1 11223
Q ss_pred hhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll 364 (521)
-.++.-.-++ ..+++.-.+++ .-++++++++|......++
T Consensus 186 Wd~v~~~ni~-~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 186 WDTVPMENIK-ELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred HHHHHHHHHH-HHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 3555555555 56666666654 5789999999988776644
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=149.12 Aligned_cols=219 Identities=20% Similarity=0.217 Sum_probs=147.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh-HHHHHHHHHhhhccCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (521)
|+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 357899999999999996 3579999999986 99999999999865 899999998655 3333322110
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEec
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPM 242 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~ 242 (521)
...+.++.. . .+.+++++.++..+++ .+.+|++.||. +++ ..+.++++.+.+.+ .++...+.
T Consensus 70 ---~~~~~~~~~-----~----~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (227)
T PRK00155 70 ---DPKVTVVAG-----G----AERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV 133 (227)
T ss_pred ---CCceEEeCC-----c----chHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec
Confidence 011222211 1 3468899999877742 46899999999 665 45999999886653 33444343
Q ss_pred CcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 243 ~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
.+ .+.. ++++|.+..+.+ .... ...-+.|.|+.+.|.+++..... ...
T Consensus 134 ~~----~~~~--v~~~g~~~~~~~---r~~~----------------------~~~~~p~~f~~~~l~~~~~~~~~-~~~ 181 (227)
T PRK00155 134 KD----TIKR--SDDGGGIVDTPD---RSGL----------------------WAAQTPQGFRIELLREALARALA-EGK 181 (227)
T ss_pred cc----cEEE--EcCCCceeecCC---hHHh----------------------eeeeCCccchHHHHHHHHHHHHh-cCC
Confidence 22 1222 254566666532 1111 22234889999988877764322 233
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+..|....+.+.+.++..+..+..+++|+|++||..|+..+.
T Consensus 182 ~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 182 TITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 445555555556788988887777889999999999987654
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=147.31 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=146.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCcCCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|||||||.|+||+. ..||+|++++|+ |||+|+++++.++ ++++|+|++++.. +.+..++... .
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 79999999999973 479999999987 9999999999998 7999999998654 3444433320 0
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.++++.. + .+..++++.++..++ ..+.+|+++||+ +++. .+..+++.+.+. +.+++..+..
T Consensus 67 ~~~~~~~-----~----~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~---- 129 (217)
T TIGR00453 67 VPKIVAG-----G----DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA---- 129 (217)
T ss_pred cEEEeCC-----C----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc----
Confidence 1233211 0 235578888887762 247899999999 6664 599999987654 3344444432
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.++..+|++|.+..+.++.+ -+...+ .|.|+.+.+.+++...... ..+..|.
T Consensus 130 --~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d~ 181 (217)
T TIGR00453 130 --DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEE-GFEITDD 181 (217)
T ss_pred --ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhc-CCCCCcH
Confidence 23445566677887766321 113344 6899999888776532222 2233566
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ 362 (521)
...+.+.+.++..++.+..+++|+|++||..|+..
T Consensus 182 ~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 182 ASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred HHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 67777778899998888777899999999888753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=146.32 Aligned_cols=213 Identities=19% Similarity=0.256 Sum_probs=146.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++...+ +++|+|++++........+.. +.. . .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~------~-~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGL------S-K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-ccc------C-C
Confidence 589999999999984 379999999987 99999999999976 999999998766544443321 110 0 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++.. + .+...+++.++..++....+.+|++.||+ +++. .++++++.+.+.+. .+...+...
T Consensus 70 ~~~~~~~-----~----~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~--- 135 (218)
T cd02516 70 VVKIVEG-----G----ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD--- 135 (218)
T ss_pred CeEEECC-----c----hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc---
Confidence 1333211 1 34578899998877422357899999999 6664 49999998865543 233333221
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
++...|++|.+.++.+..+. ....++ ++|+.+.+.+++...... ..+.+|.
T Consensus 136 ---~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~ 186 (218)
T cd02516 136 ---TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDD 186 (218)
T ss_pred ---cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcH
Confidence 12335667888888763211 255566 899999998887654332 3345676
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHH
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~ 358 (521)
...+.+.+.++..+..+..-+||+|++||..
T Consensus 187 ~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 187 ASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred HHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 6666666778888887666679999999954
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-15 Score=143.29 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=144.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
+||||+|.|+||. +|+|++++|+ |||.|+++++..+++++|+|++. .+.+.+++.+ +. +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~g-----------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-FG-----------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-cC-----------C
Confidence 7999999999994 6999999997 99999999999888999999985 3456665544 11 1
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC--
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA-- 247 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~-- 247 (521)
+++...+ . ...|+ +.+..+...+.....+.++++.||. +.+. .+.++++.+.+.+.+++.++.+..+...
T Consensus 61 ~~v~~~~--~---~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 61 EVCMTSK--H---HNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred EEEEeCC--C---CCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 2221111 1 11343 4455454444211246789999999 6664 5999999886656777777776543111
Q ss_pred -cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh-h
Q 009971 248 -TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-S 325 (521)
Q Consensus 248 -~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~-~ 325 (521)
.+...+..|.+|+.+.|...+-......+. ....|+ ...++...|||.|++++|.++........+..+ -
T Consensus 135 ~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-----~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~l 206 (238)
T TIGR00466 135 NPNAVKVVLDSQGYALYFSRSLIPFDRDFFA-----KRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKL 206 (238)
T ss_pred CCCceEEEeCCCCeEEEecCCCCCCCCCccc-----cccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCcccccchh
Confidence 113334447778888886543221100000 000111 013578999999999999877654222111111 1
Q ss_pred cchHhhhhCCceEEEEEecce-EEecCCHHHH
Q 009971 326 EVIPGATSIGMRVQAYLYDGY-WEDIGTIEAF 356 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~-w~dIgt~edy 356 (521)
|-|. ++++|++|++...++. -..|||++|+
T Consensus 207 eqlr-~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 207 EQLR-VLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HHHh-hhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 2233 3555999999998765 4699999997
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=153.61 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=145.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+.+ +++|+|++++....+.+.+...+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 567899999999999995 4589999999986 99999999999987 79999999876544433322211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~ 243 (521)
..+.++.. + .+..++++.++..++ .+.+|+..||. +++.+ +..+++..++. +.++...++.
T Consensus 72 ---~~v~~v~g-----G----~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~ 134 (378)
T PRK09382 72 ---KFVTLVTG-----G----ATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVA 134 (378)
T ss_pred ---CeEEEeCC-----C----chHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEec
Confidence 11332211 1 346789999998775 36899999998 66654 88888876543 4566666654
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
+ +..|+...+|. ..+..+ ++|+... .+.+.+..+ ... .
T Consensus 135 D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~~~-~ 172 (378)
T PRK09382 135 D--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----GRG-D 172 (378)
T ss_pred c--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----CCC-C
Confidence 3 44565445553 355444 7776432 222222221 112 2
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
.+|..+.+...|.+|..++.+..|++|++|+||..|+..+..
T Consensus 173 ~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 173 FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 367777777779999999999999999999999999886643
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-14 Score=138.63 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=143.9
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
++.+||||||.|+||+ ...||+|++++|+ |||.|+++++.++ .+++|+|+++... ..+.+++.+ +.+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCcC-----
Confidence 4789999999999997 3579999999987 9999999999876 4899999997543 333344433 2210
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~ 244 (521)
...++++.. + .+..++++.++..+++ .+.++++.||. +.+.+ +.++++.+.+.++. +.+.+..+
T Consensus 72 -~~~~~~v~~-----g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d 137 (230)
T PRK13385 72 -DQRVEVVKG-----G----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD 137 (230)
T ss_pred -CCceEEcCC-----C----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc
Confidence 011333311 1 2345899998877753 35688889999 77655 99999988765543 33333221
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
.+... .++.+....+ .... +.--+.+.|+.+.|.+..+.... ...+.
T Consensus 138 ------ti~~~-~~~~~~~~i~---r~~~----------------------~~~qtpq~f~~~~l~~~~~~~~~-~~~~~ 184 (230)
T PRK13385 138 ------TVKRV-KDKQVIETVD---RNEL----------------------WQGQTPQAFELKILQKAHRLASE-QQFLG 184 (230)
T ss_pred ------eEEEE-cCCeeEeccC---HHHH----------------------hhhcCCceeeHHHHHHHHHHHHh-cCCCc
Confidence 11222 2355444322 1111 22234788998888777653221 22334
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+|....+.+.+.+|..++-+...+.|+|++|+..|...+.
T Consensus 185 td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 6666666666889999988888999999999999987653
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=132.36 Aligned_cols=215 Identities=20% Similarity=0.266 Sum_probs=137.6
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++.|||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.+ +..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~~~------- 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-YGA------- 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-hCC-------
Confidence 3679999999999995 3999999997 99999999999887 78888876 34556665543 110
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc--CcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. +.+........+ ..|+.++++.++..++.. ..+.++++.||+ +.. .++.++++.+.+.+++.++.+.+..
T Consensus 64 -~-~~~~~~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 64 -E-VPFLRPAELATD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred -C-ceeeCChHHCCC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 0 111111000011 247889999999877531 136899999999 554 5699999999887777767666543
Q ss_pred cccCcceeEEEeCCCC-CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~g-rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
. ...++.. .+++| .++.+.++.... . .+ ....+..++|+|+++++.+.+.. .
T Consensus 139 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~--q~-------------~~~~~~~n~~~y~~~~~~~~~~~-------~- 191 (223)
T cd02513 139 R--FPWRALG-LDDNGLEPVNYPEDKRTR-R--QD-------------LPPAYHENGAIYIAKREALLESN-------S- 191 (223)
T ss_pred c--CcHHhee-eccCCceeccCcccccCC-c--CC-------------ChhHeeECCEEEEEEHHHHHhcC-------C-
Confidence 2 2222222 22223 222221111000 0 00 00125788899999998764311 0
Q ss_pred hhhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhh
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ 362 (521)
+ -+.++..+..+. ..+||+|++|+..|...
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 1 166888887776 58999999999888653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=132.10 Aligned_cols=121 Identities=25% Similarity=0.356 Sum_probs=94.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----------~-~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----------G-I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----------T-S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----------C-c
Confidence 7999999999998 49999999886 999999999999999999999987 4555555431 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEE
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~ 240 (521)
+++.. +.|..|++.+++.++..+. ..++|++++||+ +++ ..+..+++.+.+++.++++...
T Consensus 61 ~~v~~------~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVD------PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-------STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEe------ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 34322 2234899999999998773 258999999999 445 4599999999888887766554
|
... |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=134.29 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=96.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++.++++++|+++++++.+.++.|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999987 9999999999998999999999988888888887521
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~ 240 (521)
..+.. . +..|...++..++..+. ..++|++++||+ +. ...+..+++.+...+......+.
T Consensus 65 -~~~~~--~------~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN--A------SGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe--c------CCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11221 1 12678888888876442 247899999999 33 45699999988776655444443
|
At this time this gene appears to be present only in Archea |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=129.90 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=89.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++..+.+.+++...+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~----------~-v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS----------N-I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC----------C-e
Confidence 7999999999998 58999999986 9999999999998999999999987765544443211 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcE
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~adi 235 (521)
.++.. +.|..|++++++.++.. . ...+.+++++||+ +++ ..++.+++.+...+.++
T Consensus 65 ~~v~~------~~~~~g~~~si~~~l~~-~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHN------PQYAEGQSSSIKLGLEL-P-VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEEC------cChhcCHHHHHHHHhcC-C-CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 33321 12336899999988862 1 1247899999999 554 45889998876655543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-13 Score=131.15 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=138.6
Q ss_pred CcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChH-HHHHHHHHhhhcc
Q 009971 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSA-SLNRHLSRAYASN 161 (521)
Q Consensus 84 ~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~ 161 (521)
+.+++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++... .+++.+.+ +..
T Consensus 19 ~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~~~- 92 (252)
T PLN02728 19 VVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-IDV- 92 (252)
T ss_pred ccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-cCC-
Confidence 344567899999999999997 3589999999987 999999999998 489999999986643 33333332 110
Q ss_pred CCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCC--e-ecccc-HHHHHHHHHhcCCcEEE
Q 009971 162 MGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGD--H-LYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 162 ~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD--~-l~~~d-l~~ll~~h~~~~aditi 237 (521)
. +.+.. . + .+..++++.++..++. +..+++.+| . +...+ +..+++...+.++ .+
T Consensus 93 -------~-i~~v~-g----g----~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~i 150 (252)
T PLN02728 93 -------P-LKFAL-P----G----KERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--AV 150 (252)
T ss_pred -------c-eEEcC-C----C----CchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--EE
Confidence 1 22221 1 1 2356789999877752 234455555 5 66654 8899988776654 34
Q ss_pred EEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC
Q 009971 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~ 317 (521)
...+..+ .+..+++++.|.. .++.......+ .| -.|+.+.|.+.++...
T Consensus 151 ~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~~Q--------TP--------------Q~F~~~~l~~a~~~~~ 199 (252)
T PLN02728 151 LGVPVKA------TIKEANSDSFVVK---TLDRKRLWEMQ--------TP--------------QVIKPELLRRGFELVE 199 (252)
T ss_pred Eeecchh------hEEEecCCCceee---ccChHHeEEEe--------CC--------------ccchHHHHHHHHHHHH
Confidence 4444322 1222344454433 22222211110 01 1566666665554322
Q ss_pred CCCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 318 PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 318 ~~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
.. ..+.+|....+...|.+|..++-+..-+-|.||+|+..|+..+..
T Consensus 200 ~~-~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 200 RE-GLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred hc-CCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 22 222456566666668888887777778999999999999876543
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=138.57 Aligned_cols=97 Identities=24% Similarity=0.197 Sum_probs=57.7
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCcc--ccccCCC-cccCCCCcCCCceeecccccce
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFR--YFYDRSA-PIYTQPRYLPPSKMLDADVTDS 401 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~--~~~~~~~-~i~~~~~~~~~~~i~~~~i~~~ 401 (521)
.|.++.+++.+ ++.++|||.|+ ++|+++|+.++........ ....+.. .+...+.+.+.+.+. .++
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~----g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR----DQV 99 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----CCe
Confidence 68888888744 88899999999 9999999999976531100 0001111 012223333333321 345
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
.||++|.|+. +.|. +++||++|.|++++.|.
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~ 132 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLG 132 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccC
Confidence 5666666665 5554 46666666666666664
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=127.21 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=93.4
Q ss_pred CcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccC
Q 009971 379 APIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 454 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~ 454 (521)
+.+...+.+.+.+.+. ++.+ .+++||++|.|++ |.|. +++||++|.|++++.|.+++++.+
T Consensus 12 ~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~--------------- 76 (163)
T cd05636 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG--------------- 76 (163)
T ss_pred CEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---------------
Confidence 3333334444444443 3333 3588999999987 8887 799999999999999999988876
Q ss_pred CCcceeeCCCCEEeeeEECCCCEECCCcEEeCC------------------------CccCCceeecCCeEEcCCeEEEC
Q 009971 455 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS------------------------DSVQEAARETDGYFIKSGIVTII 510 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~------------------------~~~~~~~~~~~~~~I~~g~v~I~ 510 (521)
+.|++++++.+++|++++.|++++.+.+. ..+++.+.++.++.|..+ ++|+
T Consensus 77 ----~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig 151 (163)
T cd05636 77 ----TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIG 151 (163)
T ss_pred ----CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEEC
Confidence 58999999999999999999999998652 334555556666666666 7889
Q ss_pred CCCEECCCccC
Q 009971 511 KDALIPSGTII 521 (521)
Q Consensus 511 ~~~~i~~gsvi 521 (521)
++++|++|++|
T Consensus 152 ~~~~i~agsvV 162 (163)
T cd05636 152 PGSWVYPGCVV 162 (163)
T ss_pred CCCEECCCcEe
Confidence 99999999875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=119.50 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=132.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHH-HHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL-NRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~~ 165 (521)
+.++-+||||||.|+||+ .+|-|+|+.|+ ||+.++++...+++++++++|+++..... ......
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 356899999999999999 89999999997 99999999999999999999999873222 222221
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
..+.++ .+++|.+|.+.+++.++..+.... +-++++.||+ +...++..+++.++.++ . ...+
T Consensus 68 ---~~~~~v------~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p-- 131 (199)
T COG2068 68 ---LGVTVV------VNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRP-- 131 (199)
T ss_pred ---CCeEEE------eCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeee--
Confidence 113343 355677999999999998886432 5899999999 55577999999887663 2 1111
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
.| .| +...+ .+|+++.|..+.+ .+ .|
T Consensus 132 -----~~-------~g-------~rG~P------------------------------v~~~~~~~~~l~~--l~--GD- 157 (199)
T COG2068 132 -----VY-------GG-------ARGHP------------------------------VLLSKDLFPALAR--LS--GD- 157 (199)
T ss_pred -----ec-------cC-------CcCCc------------------------------eeechhHHHHHhh--cC--Cc-
Confidence 01 00 11111 1567777764443 11 22
Q ss_pred hhcchHhhhhCCceEEEEEe-cceEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~-~g~w~dIgt~edy~~An~~ll 364 (521)
+..-..+.+.+..+..++. .+.-.|||||+||..++..+.
T Consensus 158 -~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 -VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 1222233333555566665 678999999999999987654
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=123.48 Aligned_cols=115 Identities=22% Similarity=0.253 Sum_probs=83.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++...+.+ .. +
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--------
Confidence 467999999999999995 379999999986 99999999998 67999999987543322 11 0
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRET 231 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 231 (521)
+ +.++.... .+..|+.++++.++...+ .+.+++++||+ +.+.+ +..+++.+.+.
T Consensus 62 --~-~~~v~~~~-----~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 62 --G-LPVIPDSL-----ADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred --C-CcEEeCCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 0 12222111 112688899998887543 47899999999 66644 88888765433
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=134.98 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=88.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.|..++.+.|.+.+. .++.||++|.|+. +.|. +++||++|.|++++.|+. .+.+++
T Consensus 10 ~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~ 85 (262)
T PRK05289 10 IVEPGAKIGENVEIGPFCVIG----PNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGD 85 (262)
T ss_pred EECCCCEECCCCEECCCeEEC----CCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECC
Confidence 445555555555555555442 4577778887776 6666 678888888888877764 233332
Q ss_pred c-cccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EE
Q 009971 440 D-YYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VT 508 (521)
Q Consensus 440 ~-~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~ 508 (521)
+ ... ..+.|.++. -.+.||+++.|. ++.|+++|.||+++++.+...+.+..+++++++|+.+. ++
T Consensus 86 ~~~I~----e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~ 161 (262)
T PRK05289 86 NNTIR----EFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVR 161 (262)
T ss_pred CCEEC----CCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCE
Confidence 1 111 111121111 014677777775 67777777777777777777777777777777777663 67
Q ss_pred ECCCCEECCCccC
Q 009971 509 IIKDALIPSGTII 521 (521)
Q Consensus 509 I~~~~~i~~gsvi 521 (521)
||++++|++||+|
T Consensus 162 Ig~~~~Ig~gs~V 174 (262)
T PRK05289 162 IGAHAMVGGMSGV 174 (262)
T ss_pred ECCCCEEeeecce
Confidence 8889999988875
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=127.08 Aligned_cols=142 Identities=22% Similarity=0.220 Sum_probs=89.3
Q ss_pred cCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEEC-Ccccccccc-cccc
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFL 451 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~-~~~~e~~~~-~~~~ 451 (521)
++.+.+...+.+.+.+.+. ++.+.++.|+++|.|+. +.+.+++|++++.|+++++|....+++ +........ .++.
T Consensus 25 ~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ 104 (193)
T cd03353 25 DPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST 104 (193)
T ss_pred CCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence 3333333334444444443 45556667778888876 777777777777777777776333333 221111111 3455
Q ss_pred ccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCcc-------CCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 452 AAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV-------QEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~-------~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++++ .|++.+++.+++|++++.||+++.+.+.++. +++++++.++.|..+ ++|+++++|++|++|
T Consensus 105 ig~~~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 105 IGEGS---KANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred EcCCC---EecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 66666 6777777788999999999999988775543 334444444444445 789999999999875
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=132.96 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=80.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.+..++.+.|.+.+. .++.||++|.|+. |.|. ++.||++|.|+++++|.. .+.+++
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred EECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 445555555555555554442 3455566666655 5555 466666666666666642 222222
Q ss_pred -ccccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EE
Q 009971 440 -DYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VT 508 (521)
Q Consensus 440 -~~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~ 508 (521)
+... ..+.|..+. -.+.||+++.|. ++.|++++.||++|.|.+...+...++++++++|+.+. ++
T Consensus 83 ~~~Ig----~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~ 158 (254)
T cd03351 83 NNTIR----EFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCR 158 (254)
T ss_pred CCEEC----CccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcE
Confidence 1111 111111110 015677777775 67777777777777777777777777777777776652 77
Q ss_pred ECCCCEECCCccC
Q 009971 509 IIKDALIPSGTII 521 (521)
Q Consensus 509 I~~~~~i~~gsvi 521 (521)
||++++|++|++|
T Consensus 159 Ig~~~~Ig~~s~V 171 (254)
T cd03351 159 IGRHAMVGGGSGV 171 (254)
T ss_pred ECCCCEECcCCEE
Confidence 8888888888764
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-13 Score=130.93 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=77.0
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc-------------------eEEECCccccccccccccccCCCc-
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-------------------TLLMGADYYETDADRRFLAAKGSV- 457 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~-------------------s~i~~~~~~e~~~~~~~~~~~~~~- 457 (521)
++.||++|+|.. ++|. ++.||++|.|++|++|+. .+++++ -+|. +.++.|++++.
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd-~VeI--GanT~Idrga~~ 223 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD-DVEI--GANTTIDRGALD 223 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC-ceEE--cccceecccccc
Confidence 344444444444 4455 366666666666666542 122221 1222 25777888743
Q ss_pred ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 458 PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 458 ~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
.+.||++++|. .+.|++||+||++|.|.+.+++.+..++|++|.|+.. |.|..+..|++++
T Consensus 224 dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~ 285 (338)
T COG1044 224 DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGV 285 (338)
T ss_pred CceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCC
Confidence 45789999998 5899999999999999999999999999999999888 5544444444444
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=125.08 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=90.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+.+.++++|+|++++....+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~----------~ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L----------P 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C----------C
Confidence 4689999999999985 9999999986 99999999999999999999998876655444332 0 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDAD 234 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad 234 (521)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+ +.+ ..+..+++.+...+++
T Consensus 64 -~~~~~~------~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVIN------PDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeC------CChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 222221 11237899999999987752 247899999999 555 4588888887654444
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=134.51 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=50.1
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||+++.|. .+.|++||+||+++.|.+..++....++|++++|+.+. ++||++++|+++|+|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 3456666665 57888899999999998888888888888888887663 778888888888865
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=130.99 Aligned_cols=140 Identities=22% Similarity=0.286 Sum_probs=93.3
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.|...+.+.|.+.+. .++.||++|.|+. +.|. ++.||+++.|++++.|+. .+.+|+
T Consensus 7 ~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 7 VIDPSAKLGSGVEIGPFAVIG----ANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 455555565555565555542 4577777777775 6666 677777777777777753 233332
Q ss_pred c-cccccccccccccCCC---cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEE
Q 009971 440 D-YYETDADRRFLAAKGS---VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 509 (521)
Q Consensus 440 ~-~~e~~~~~~~~~~~~~---~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I 509 (521)
+ ... ..+.|..+. -.+.||+++.|. ++.|+++|.||++|+|.+...+...++++++++|+.+. ++|
T Consensus 83 ~~~I~----e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 83 RNVIR----EGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred ceEEC----CccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 1 110 111111110 025778888876 78899999999999999988888888999999988883 567
Q ss_pred CCCCEECCCccC
Q 009971 510 IKDALIPSGTII 521 (521)
Q Consensus 510 ~~~~~i~~gsvi 521 (521)
|++++|++||+|
T Consensus 159 G~~a~Vg~gs~V 170 (255)
T PRK12461 159 GALAMMAGGSRI 170 (255)
T ss_pred CCCcEECCCceE
Confidence 778888877764
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-12 Score=117.65 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=167.2
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++..+||+|-=.+|||.. |||-.|+|+ |||.|+.++..++|.++++|.| +++.+.+.+.+. +
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---------G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---------G 63 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh---------C
Confidence 567899999988999974 999999997 9999999999999999999999 567888888761 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+.+ ++.. .+...|| +-+..+...+.-...+-++=+.||. +.+ ..+.++++...+.++++..++.+..++
T Consensus 64 -~~a-vmT~------~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ 134 (247)
T COG1212 64 -GEA-VMTS------KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDE 134 (247)
T ss_pred -CEE-EecC------CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCH
Confidence 111 2211 1123677 7777777666433456777889999 655 458889888888888876666665432
Q ss_pred c---CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 246 R---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 246 ~---~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
. ..+--.++.|.+|+-+.|...|-+...++ . -..+++.-.|||.|++.+|.++........+.
T Consensus 135 ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~ 200 (247)
T COG1212 135 EEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSPLEK 200 (247)
T ss_pred HHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCchhHH
Confidence 1 12333456788899999997766443221 0 00256888999999999998887643221111
Q ss_pred hhhcchHh--hhhCCceEEEEEecceE-EecCCHHHHHHHhhhccc
Q 009971 323 FGSEVIPG--ATSIGMRVQAYLYDGYW-EDIGTIEAFYNANLGITK 365 (521)
Q Consensus 323 ~~~dil~~--li~~~~~I~~~~~~g~w-~dIgt~edy~~An~~ll~ 365 (521)
.+-|.+ +++.|++|.+...+..- ..+||++||..+.+.+..
T Consensus 201 --~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 201 --IESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred --HHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 233433 35669999999998654 999999999999877643
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-12 Score=120.54 Aligned_cols=214 Identities=17% Similarity=0.193 Sum_probs=141.6
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
|||||+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+ +.+.+.+...+ +.. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~g~---------~ 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-YGA---------S 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-cCC---------E
Confidence 7999999999995 4999999987 99999999999987 68887766 34556555443 211 0
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhh-cCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.+...... ..+..|+.+++.+++..++. ...+.++++.+|. +.+ .++..+++.+.+.+++..+.+.+.... +
T Consensus 63 v~~~r~~~l---~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-~ 138 (222)
T TIGR03584 63 VPFLRPKEL---ADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-I 138 (222)
T ss_pred eEEeChHHH---cCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-h
Confidence 111111110 11136888999999987753 2246799999999 555 569999999988778877777664321 1
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.+. ...+++|++..+....... .... ....+..+.++|+++++.+.+ . ..+.
T Consensus 139 -~~~-~~~~~~g~~~~~~~~~~~~--~rQd-------------~~~~y~~nga~y~~~~~~~~~--~------~~~~--- 190 (222)
T TIGR03584 139 -QRA-FKLKENGGVEMFFPEHFNT--RSQD-------------LEEAYHDAGQFYWGKSQAWLE--S------GPIF--- 190 (222)
T ss_pred -HHh-eEECCCCcEEecCCCcccC--CCCC-------------CchheeeCCeEEEEEHHHHHh--c------CCcc---
Confidence 122 2344567766655221110 0000 012367899999999987642 1 1111
Q ss_pred hHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 328 IPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
+.++..|.++. ..+||+|++|+..|...+
T Consensus 191 -------~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 191 -------SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred -------CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 45778888875 489999999999987643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-12 Score=119.98 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=84.9
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (521)
++.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +........
T Consensus 3 ~~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~~-------- 66 (200)
T PRK02726 3 TVKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLPP-------- 66 (200)
T ss_pred CcCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhccC--------
Confidence 34567999999999999997 48999999986 9999999999864 78999988632 222111110
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHh
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (521)
+ +.++.. +.|..|..++++.++..++ .+.+++++||+ +...+ +..+++.+..
T Consensus 67 ----~-~~~i~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 ----G-CHWLRE------PPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred ----C-CeEecC------CCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 1 233321 2234799999999998775 37899999999 66654 8888887643
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=110.64 Aligned_cols=98 Identities=35% Similarity=0.581 Sum_probs=85.8
Q ss_pred cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 395 DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
++.+++++||++|.|+++.|.+|+|++++.|+++|+|.+++++++ +.||+++.+.+++|++
T Consensus 7 ~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~siig~ 67 (104)
T cd04651 7 RGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRRAIIDK 67 (104)
T ss_pred CCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEeEEECC
Confidence 455778999999999988899999999999999999999999887 6899999999999999
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
++.||+++++.+.....+ .++++..+++++|++++.+
T Consensus 68 ~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 68 NVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCEECCCCEECCCccccc----ccceEcCCeEEEEecccCC
Confidence 999999999987644433 2688889998999988753
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=127.75 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=42.1
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||++++|. ++.|+++|.||++++|.+...+...++++++++|+.+. ++|+++++|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 5667777764 56666666666666666666666666666666666552 778888888888764
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=130.80 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||+++.|. .+.|++||+||+++.|....++...+++|++++|+.+. ++||++++|+++++|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 4677777776 57788888888888888888888888888888888773 667888888887764
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=119.15 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=103.3
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
.+++.+.|..++.++|.|.++ .++.|++|++|++ ++|. ++.||.+++|.+.+.|+. .++.|+
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg----~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIG----PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred eeCCCCCcCCCCEECceEEEC----CCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 455555566666666655542 4688899999987 7777 788998887777666642 222222
Q ss_pred ccc--ccccc-ccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEEC
Q 009971 440 DYY--ETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTII 510 (521)
Q Consensus 440 ~~~--e~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~ 510 (521)
+-- |...- +.+.-|.+. +.||+++-+. ++.|.++|+||.+|++.|...+..+..++|.++|+... |.||
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~--T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG 164 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGV--TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIG 164 (260)
T ss_pred CCeEeeEEEEeccccCCcee--EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEc
Confidence 111 11111 334444555 7899999987 99999999999999999999999999999999998774 7899
Q ss_pred CCCEECCCccC
Q 009971 511 KDALIPSGTII 521 (521)
Q Consensus 511 ~~~~i~~gsvi 521 (521)
++|+||..|-|
T Consensus 165 ~~amiGg~S~v 175 (260)
T COG1043 165 AHAMIGGLSAV 175 (260)
T ss_pred chheecccccc
Confidence 99999988754
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-11 Score=114.29 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=144.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh-HHHHHHHHHhhhccCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (521)
++++.+||||||.|+||+. ..||.+++++|+ |||+|+++.|..+. |++|+|+++... ..+.++... .
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~----- 70 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL--S----- 70 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--c-----
Confidence 4578999999999999994 899999999986 99999999998754 899999997633 344444421 0
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~ 242 (521)
....++++... ..-.++++.++..++++..+.||+..+=- +... .+.++++..... ...+.+.|+
T Consensus 71 --~~~~v~~v~GG---------~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~--~aai~alpv 137 (230)
T COG1211 71 --ADKRVEVVKGG---------ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKY--GAAILALPV 137 (230)
T ss_pred --cCCeEEEecCC---------ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccC--CcEEEEeec
Confidence 11224444322 23568999999888754567888887776 5554 488888444333 344555554
Q ss_pred CcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 243 ~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
.+ .+...+.++.+.+......-.... .|+ .|+.+.|.+.+...+....+
T Consensus 138 ~D------Tik~~~~~~~i~~t~~R~~l~~~Q-----------TPQ--------------~F~~~~L~~a~~~a~~~~~~ 186 (230)
T COG1211 138 TD------TLKRVDADGNIVETVDRSGLWAAQ-----------TPQ--------------AFRLELLKQALARAFAEGRE 186 (230)
T ss_pred cC------cEEEecCCCCeeeccChhhhhhhh-----------CCc--------------cccHHHHHHHHHHHHhcCCC
Confidence 32 233444566676654332211110 011 56666776666543332222
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+ +|--..+...|.++..+.-+-+-+.|.||+|+..|+..+.
T Consensus 187 ~-tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 187 I-TDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred c-CCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 3 3333334444788888888878899999999999987654
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=116.76 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=131.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (521)
+.|||||||.|+||+ ...||.+++++|+ |+|.|+++.|.+. .+++|+|++.... +.+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 468999999999998 4789999999997 9999999999884 5899999997665 444444444 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.+.++... ..-.+++++++..+++. .+.+|+..|=- +...+ +.++++..++. .+..+...+..+
T Consensus 67 --~v~iv~GG---------~tR~~SV~ngL~~l~~~-~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D- 132 (221)
T PF01128_consen 67 --KVKIVEGG---------ATRQESVYNGLKALAED-CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD- 132 (221)
T ss_dssp --TEEEEE-----------SSHHHHHHHHHHCHHCT-SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS-
T ss_pred --CEEEecCC---------hhHHHHHHHHHHHHHcC-CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc-
Confidence 14444322 22558999999888753 36788877776 66544 88888887652 333455555332
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
.+...+++|.+.+...... . +.-=-=-.|..+.+.+..+....... ..+
T Consensus 133 -----Tik~v~~~~~v~~tldR~~---l----------------------~~~QTPQ~F~~~~l~~a~~~a~~~~~-~~t 181 (221)
T PF01128_consen 133 -----TIKRVDDDGFVTETLDRSK---L----------------------WAVQTPQAFRFELLLEAYEKADEEGF-EFT 181 (221)
T ss_dssp -----EEEEESTTSBEEEEETGGG---E----------------------EEEEEEEEEEHHHHHHHHHTHHHHTH-HHS
T ss_pred -----cEEEEecCCcccccCCHHH---e----------------------eeecCCCeecHHHHHHHHHHHHhcCC-Ccc
Confidence 2334565677766543211 1 11111126777777766654311111 224
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
|--..+...|.+++.++-+..-+-|.+|+|+..|+..+
T Consensus 182 Ddasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 182 DDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp SHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 44444555588999888887789999999999988654
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-12 Score=113.20 Aligned_cols=110 Identities=23% Similarity=0.307 Sum_probs=89.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.+||+|||+|+||+ ..-|||++++|+ |||+|+++.+.+ .+++|++++..+...+++|+...
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~------------ 62 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV------------ 62 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc------------
Confidence 579999999999999 356999999997 999999999999 68999999999999999999873
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHH
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHR 229 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~ 229 (521)
.++++.... .|.-.-++.++..+. .++|++++|+ +.+. .+..+++.+.
T Consensus 63 gv~vi~tpG--------~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 63 GVKVIETPG--------EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred CceEEEcCC--------CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 155654322 456667777776664 4999999999 5554 4788888775
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=116.05 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=88.4
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.+... . ..+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~-~-----~~~- 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLL-A-----DER- 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhh-c-----CCC-
Confidence 58999999999998 48999999986 999999998888889999999987654321 1111000 0 001
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcE
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adi 235 (521)
+.++. .++|..|.+.+++.++..+.....+.+++++||+ +++.+ +..+++...+...++
T Consensus 68 ~~~~~------~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 68 IMLVC------CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred eEEEE------CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 23321 2234468899999999876433357899999999 66655 888888765544443
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=116.75 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=84.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++.... + .. + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~-~~-~----------~ 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---Y-AL-L----------G 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---H-hh-c----------C
Confidence 4689999999999983 9999999986 9999999999988 89999999877544 1 11 1 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADI 235 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~adi 235 (521)
+.++.. +.|..|+.++++.++..++ .+.+++++||+ +.+. .+..+++.+ ..+.++
T Consensus 59 -~~~v~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 -VPVIPD------EPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred -CcEeeC------CCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 223321 1234799999999987764 47899999999 5554 488888776 334443
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=114.18 Aligned_cols=106 Identities=17% Similarity=0.331 Sum_probs=75.8
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCC-CcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (521)
.|++++.+||||||.|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++ +.. . .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~--- 63 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F--- 63 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c---
Confidence 45668999999999999997 6999999998 7 9999999999877 8999999874 111 0 0
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHH
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERF 224 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~l 224 (521)
. ++++..... . ..|...++..++...+ .+.+++++||+ +.+.+ +.++
T Consensus 64 ---~---~~~v~d~~~--~---~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 ---N---APFLLEKES--D---LFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred ---C---CcEEecCCC--C---CCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 0 123322111 1 2566667776654333 47899999999 66655 5555
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=116.29 Aligned_cols=117 Identities=13% Similarity=0.300 Sum_probs=82.0
Q ss_pred CcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCcccccccccccccc
Q 009971 379 APIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 453 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~ 453 (521)
..|..++.+.|.+.+ +.++.||++|.|+. |.|. ..+||++|.||++|+|.... ..++.|+
T Consensus 9 p~i~~~~~I~~~a~I----~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----------~~~siIg 73 (192)
T TIGR02287 9 PVVHPEAYVHPTAVL----IGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----------GQDTVVE 73 (192)
T ss_pred CcCCCCcEECCCCEE----EeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----------CCCCeEC
Confidence 334455555555554 35678888888887 7776 36899999999999984211 0123333
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++ .|+++++|.+|+|+++|.||.++++.+. .+++++++|++| .+|.++..|+++++
T Consensus 74 ~~~---~Ig~~a~I~~siIg~~~~IG~ga~I~~g------~~IG~~s~Vgag-s~V~~~~~ip~~~l 130 (192)
T TIGR02287 74 ENG---HVGHGAILHGCIVGRNALVGMNAVVMDG------AVIGENSIVAAS-AFVKAGAEMPAQYL 130 (192)
T ss_pred CCC---EECCCCEEcCCEECCCCEECCCcccCCC------eEECCCCEEcCC-CEECCCCEECCCeE
Confidence 344 8999999999999999999999988764 456666666666 56666666666654
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=112.11 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=75.2
Q ss_pred cceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|+|+. |.|. .++||++|.|+++|.|.+++.+... ....+.||+++ .|+.++++.+++||
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~~---~i~~~~~i~~~~IG 87 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSNN---VFEVGCKCEALKIG 87 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCCC---EECCCcEEEeeEEC
Confidence 4677888888887 7774 3699999999999999988765331 12344555555 57777888888888
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCC
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 518 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~g 518 (521)
++|.||.++.|.....+++++.++.+++|..+ +.|+++++++.+
T Consensus 88 d~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~ 131 (164)
T cd04646 88 NNNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGA 131 (164)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCC
Confidence 88888888888765444444444444444444 444444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-11 Score=122.74 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=86.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.+++.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 456899999999999995 379999999986 999999999986 4999999776554443333211
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 234 (521)
+.++.... +. ..|..++++.++..++ .+.+++++||+ +++.+ +..+++.+...+++
T Consensus 67 ----~~~i~d~~----~g-~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDIL----PG-FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCC----CC-CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 11222111 11 1588899999987664 36799999998 66654 78888876555554
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=121.52 Aligned_cols=143 Identities=24% Similarity=0.272 Sum_probs=70.6
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-------cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccc-
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-------TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY- 442 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-------~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~- 442 (521)
.+++++.+..++.+.|.+.+. ++.| .+++||++|.||+ |.|. +++|+.++.||++|.|....+++.+-+
T Consensus 107 ~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg 186 (338)
T COG1044 107 VIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFG 186 (338)
T ss_pred cccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccc
Confidence 445666666655555555554 2222 2344445555554 4444 455555555555555554444444322
Q ss_pred -cc-ccc--ccccccCCCcceeeCCCCEEe-eeEECCC----CEECCCcEEeCCCccCCceeecCCeEEcCC-----eEE
Q 009971 443 -ET-DAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKN----ARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVT 508 (521)
Q Consensus 443 -e~-~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~----~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g-----~v~ 508 (521)
.. ... +-.++ |. |.||+++.|. ++.|++. ++||+++.|-|...++..++||++|.|.++ .+.
T Consensus 187 ~a~~~~g~~Ki~q~--g~--V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~ 262 (338)
T COG1044 187 YAGTAIGWVKIPQI--GR--VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVK 262 (338)
T ss_pred cccccCCceEccee--ce--EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccce
Confidence 11 110 00000 12 3444444444 4444444 555555555555555555555555555444 277
Q ss_pred ECCCCEECCCcc
Q 009971 509 IIKDALIPSGTI 520 (521)
Q Consensus 509 I~~~~~i~~gsv 520 (521)
||++|.||..+.
T Consensus 263 IG~~v~igg~vg 274 (338)
T COG1044 263 IGKYVIIGGQVG 274 (338)
T ss_pred ECCeEEECccee
Confidence 888888776553
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=114.82 Aligned_cols=144 Identities=24% Similarity=0.297 Sum_probs=71.8
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc----------------
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED---------------- 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~---------------- 433 (521)
++++.+.+...+.+.+.+.+. ++.+ .++.||++|.|+. +.|. +++||++|.|+++++|..
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 344444444444444444443 2334 4566777777765 6566 367777777777666642
Q ss_pred ---eEEECCc-cccccccccccccCC-CcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-
Q 009971 434 ---TLLMGAD-YYETDADRRFLAAKG-SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI- 506 (521)
Q Consensus 434 ---s~i~~~~-~~e~~~~~~~~~~~~-~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~- 506 (521)
.++++.. +.... +.+..+ ...+.||+++.+. ++.|+.++.||+++.+.+...+....+++++++|+.+.
T Consensus 89 ~~~~v~Ig~~~~Ig~~----~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~ 164 (205)
T cd03352 89 QLGGVIIGDDVEIGAN----TTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVG 164 (205)
T ss_pred CcceEEECCCEEECCC----CEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCE
Confidence 1112211 11110 111000 0013445555554 44555555555555555444444444555555555441
Q ss_pred ----EEECCCCEECCCccC
Q 009971 507 ----VTIIKDALIPSGTII 521 (521)
Q Consensus 507 ----v~I~~~~~i~~gsvi 521 (521)
++|+++++|++|++|
T Consensus 165 v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 165 IAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred EeCCcEECCCCEEcCCCEE
Confidence 668888888887764
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-11 Score=109.44 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=70.8
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEE-----cceEEECCccccccccccccccCCCcceeeCCCCEEe
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAII-----EDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 468 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I-----~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~ 468 (521)
.++.||++|+|+. |.|.. +.||++|.|+++|+| .+++++++ +.|++++.+.
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~ 77 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILH 77 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEE
Confidence 3577888888876 77763 899999999999999 34555544 4899999999
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++|++++.||.+++|.... +++++++|+.+ ++|.++..|+++++
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~-s~v~~~~~i~~~~~ 122 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGA------VIGEESIVGAM-AFVKAGTVIPPRSL 122 (155)
T ss_pred CCEECCCCEECCCCEEeCCC------EECCCCEECCC-CEeCCCCEeCCCCE
Confidence 99999999999999997754 45555555555 44555555555443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=120.19 Aligned_cols=128 Identities=15% Similarity=0.303 Sum_probs=85.5
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADR 448 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~ 448 (521)
+++..+.+...+.+.|.+.+ +.++.||++|.|+. |.|.. ++||++|.|+++|+|..+..-- .....
T Consensus 48 ~~~~~p~I~~~~~I~p~A~V----~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~-----~g~~~ 118 (269)
T PLN02296 48 IFDKAPVVDKDAFVAPSASV----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNL-----SGKVL 118 (269)
T ss_pred hcCCCCccCCCCEECCCcEE----EcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcc-----cCCCC
Confidence 33444555566666666665 34677888888876 76663 4899999999999886321100 00112
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+.||+++ .||++++|.+|+|+++|.||.+++|.. +.+++++++|+.| ++|.+++.|+++++
T Consensus 119 ~siIG~~v---~IG~~avI~g~~Igd~v~IG~ga~I~~------gv~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 119 PTIIGDNV---TIGHSAVLHGCTVEDEAFVGMGATLLD------GVVVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred CcEeCCCC---EECCCceecCCEECCCcEECCCcEECC------CeEECCCCEECCC-CEEecCCEeCCCeE
Confidence 34555555 788888888888999999988888875 4566667777777 66666666666664
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=113.57 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=64.5
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRF 450 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~ 450 (521)
++++...+...+++.|.+.+. .++.||++|+|++ |.|.++.||++|.|++++.|+++++..+......+. ..+
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~ 86 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86 (193)
T ss_pred EEcCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence 445555566666666666552 4678999999987 999989999999999999999888766533221111 123
Q ss_pred cccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 451 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.+++++ .|++++.+.+++|++++.|+..
T Consensus 87 ~Ig~~~---~Ig~~~~i~~s~ig~~~~i~~~ 114 (193)
T cd03353 87 VLGEGV---HIGNFVEIKKSTIGEGSKANHL 114 (193)
T ss_pred EECCCC---EECCcEEEecceEcCCCEeccc
Confidence 343333 4555555555555555544443
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-11 Score=112.77 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=84.8
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. .+++|+|++++.... +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~----------~ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF----------G 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC----------C
Confidence 368999999999998 369999999986 999999999986 599999998654322 221111 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adi 235 (521)
+.++.... .+..|+.++|+.++..++ .+.+++++||+ +.+.+ +.++++.+.+.++.+
T Consensus 62 -~~~i~~~~-----~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDAL-----ADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 22322111 123799999999987764 47899999999 66655 788887765444443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=108.29 Aligned_cols=118 Identities=22% Similarity=0.359 Sum_probs=81.2
Q ss_pred CCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccccccc
Q 009971 378 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 452 (521)
Q Consensus 378 ~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~ 452 (521)
...|.+++.+.|.+.+ ++++.||+++.|+. ++|+ ...||+++.|.+||+|... ....+.|
T Consensus 11 ~P~i~~~a~Va~~A~v----iGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~-----------~~~p~~I 75 (176)
T COG0663 11 SPKIDPTAFVAPSATV----IGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHAD-----------PGYPVTI 75 (176)
T ss_pred CCCCCCceEECCCCEE----EEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecC-----------CCCCeEE
Confidence 4445555666666655 57788888888887 7776 2466666666666665431 1235566
Q ss_pred cCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
|+++ +||+++.|++|.|+++|.||.++++.++ ++||++|+|++| .+|.++-.+|++++
T Consensus 76 G~~v---tIGH~aivHGc~Ig~~~lIGmgA~vldg------a~IG~~~iVgAg-alV~~~k~~p~~~L 133 (176)
T COG0663 76 GDDV---TIGHGAVVHGCTIGDNVLIGMGATVLDG------AVIGDGSIVGAG-ALVTPGKEIPGGSL 133 (176)
T ss_pred CCCc---EEcCccEEEEeEECCCcEEecCceEeCC------cEECCCcEEccC-CcccCCcCCCCCeE
Confidence 6666 8999999999999999999999999984 455556666666 55555555555543
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-11 Score=117.22 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=78.8
Q ss_pred cCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-------------eeEECCCCEECCCCEEcceEEECC
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-------------~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
++.+.+...+++...+.+. .+.| .++.||++|.|++ +.|. +++||++|.|+++|+|......+.
T Consensus 21 ~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 100 (254)
T cd03351 21 GPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGG 100 (254)
T ss_pred CCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCC
Confidence 3333333333333333333 3333 3577788888876 7775 578888888888888875332221
Q ss_pred ccccccccccccccCCCc---ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 440 DYYETDADRRFLAAKGSV---PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 440 ~~~e~~~~~~~~~~~~~~---~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
..... ..++.+++++. .+.||+++.|. ++.+..+++||++|+|.+...+..+++++++++|+.+ ++|-+
T Consensus 101 ~~~~I--G~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~ 173 (254)
T cd03351 101 GVTRI--GNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQ 173 (254)
T ss_pred CceEE--CCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEee
Confidence 00000 01233333321 12566666665 5667777888888888888888888888888888888 44433
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-10 Score=107.85 Aligned_cols=115 Identities=26% Similarity=0.298 Sum_probs=80.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh--HHHHHHHHHhhhccCCCCcCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|||||+|.++||. +|+|+|++|+ |||+|+++.+.+++ +++|+|+++... +.+.+++.. +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~---------- 63 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L---------- 63 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----------
Confidence 7999999999995 3999999987 99999999999987 899999998765 556666543 1
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEE
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADIT 236 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~adit 236 (521)
+ ++++.. +.| + .+......++....+.++++.||+ +.+ ..++++++.+...+.+++
T Consensus 64 ~-v~~v~~------~~~--~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 64 G-VKVFRG------SEE--D---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred C-CeEEEC------Cch--h---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 1 223211 111 1 222222222222347899999999 665 459999998877666654
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-11 Score=117.02 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=57.9
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcc---ccccccccccccCCCcceeeCCCCEEe-eeEECC
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY---YETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 474 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~---~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 474 (521)
++|+++++|++ |.|. +++|..++.||++|.|.+...++... ...+......||+++ .|+++++|. .+.++.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~---~I~e~vtI~~gt~~g~ 100 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN---VIREGVTIHRGTKGGG 100 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce---EECCccEEecCcccCC
Confidence 55555555554 5555 55555555666666665444444311 000111233444444 445555444 233344
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCcc
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 520 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsv 520 (521)
.+.||+++.|.....+...+.+|+++.|+.+. ++|+++++|+++++
T Consensus 101 ~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 101 VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 55555555555555555555555555555431 55666666655554
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=111.23 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=95.4
Q ss_pred ccCCCcccCCCCcCCCceee-ccccc-ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccc-----
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETD----- 445 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~----- 445 (521)
+++.+.|...+.+.++++++ ++.|. .++|++++.|++ |.|. ++.|+.++.||++|.|.+...++.+.++..
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 83 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG 83 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence 46677777777777777775 44453 377777777776 7776 677777778888888877555554322111
Q ss_pred -----ccccccccCCCcceeeCCCCEEe-----eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 446 -----ADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 446 -----~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
....++++++. .|++++.+. ++.|++++.|+.++.|.....+++...++.++.+..+ ++|++++.|
T Consensus 84 ~~~~~~~~~v~Ig~~~---~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~i 159 (205)
T cd03352 84 WVKIPQLGGVIIGDDV---EIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVII 159 (205)
T ss_pred EEEcCCcceEEECCCE---EECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEE
Confidence 11245566555 677777764 3677777777777777766666666666666666666 888888888
Q ss_pred CCCccC
Q 009971 516 PSGTII 521 (521)
Q Consensus 516 ~~gsvi 521 (521)
+++++|
T Consensus 160 g~~~~v 165 (205)
T cd03352 160 GGQVGI 165 (205)
T ss_pred cCCCEE
Confidence 888764
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-11 Score=111.11 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=73.7
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|.|+. |.|.. .+||.+|.||++|+|..... ..+.+++++ .||+++.+.+++|+
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----------~~siIg~~~---~Ig~~a~i~g~vIG 92 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----------TDTIVGENG---HIGHGAILHGCVIG 92 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----------CCCEECCCC---EECCCcEEeeEEEC
Confidence 4677888888886 77764 58999999999998865321 234555555 89999999999999
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++|.||.++++.+. .++++++.|++| .+|-++..++++++
T Consensus 93 ~~v~IG~ga~V~~g------~~IG~~s~Vgag-s~V~~~~~ip~~~~ 132 (196)
T PRK13627 93 RDALVGMNSVIMDG------AVIGEESIVAAM-SFVKAGFQGEKRQL 132 (196)
T ss_pred CCCEECcCCccCCC------cEECCCCEEcCC-CEEeCCcCcCCCcE
Confidence 99999999998764 456666666666 55556665655543
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-11 Score=127.50 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=62.1
Q ss_pred cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCCEEeee-
Q 009971 395 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRA- 470 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~~i~~~- 470 (521)
++.+.+++||++|.|+. +.|. +++||++|.||+++.+.++.+..+..+..... ..+.||+++ .||.++.+.+.
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~---~ig~~~~~~~~~ 384 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNV---NIGAGTITCNYD 384 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCc---EECCCeEEeCcc
Confidence 34455677888888887 7777 68888888888888888777665432211100 123334433 34444444210
Q ss_pred E-ECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 471 I-IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 471 i-i~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
- -+.++.||++++|+....+..+.++|++++|++|
T Consensus 385 ~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g 420 (451)
T TIGR01173 385 GANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAG 420 (451)
T ss_pred cccCCCCEECCCcEECCCCEEECCcEECCCCEEccC
Confidence 0 0013455555555554444556778888888888
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=112.22 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=6.3
Q ss_pred EEECCCCEECCCcc
Q 009971 507 VTIIKDALIPSGTI 520 (521)
Q Consensus 507 v~I~~~~~i~~gsv 520 (521)
++||++++|++|++
T Consensus 127 v~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 127 VTIGNGAVIAAGAV 140 (204)
T ss_pred CEECCCCEECCCCE
Confidence 44444444444443
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=112.94 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCcccccccccccc
Q 009971 377 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 451 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~ 451 (521)
....+...+.+.|.+.+ ++++.||++|.|+. ++|.. .+||.+|.|+++|+|........ .....+.
T Consensus 58 ~~p~i~~~~~I~p~a~i----~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tv 128 (246)
T PLN02472 58 WVPKVAVDAYVAPNVVL----AGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETL 128 (246)
T ss_pred cCCccCCCCEECCCCEE----ecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCcccc-----CCCCCcE
Confidence 33445556666666665 34677888888876 66652 68999999999999953210000 0002344
Q ss_pred ccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 452 AAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
||+++ .||++|.|.+|+|+++|.||.+++|..+ ..+++++.|+.| .+|.++..|++|++
T Consensus 129 IG~~v---~IG~~s~L~~~~Igd~v~IG~~svI~~g------avIg~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 129 IDRYV---TIGAYSLLRSCTIEPECIIGQHSILMEG------SLVETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred ECCCC---EECCCcEECCeEEcCCCEECCCCEECCC------CEECCCCEECCC-CEECCCCEeCCCCE
Confidence 55555 8999999999999999999999988764 456666666666 56666666666654
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=114.82 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=27.8
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++.|. ++.|..+++||++++|.+...+..+.+++++++|+++
T Consensus 121 ~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~ 167 (254)
T TIGR01852 121 VVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGL 167 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeee
Confidence 445555554 4555556666666666666666666666666666666
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=94.68 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=53.0
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++++|++ +.|.+++||++|.|+++|+|++++++.+ +.|++++.|.+++|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 677777776 7777888888888888888888888776 57888888888888888888888
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 88864
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=119.58 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=34.1
Q ss_pred ccccCCCcceeeCCCCEEe-----eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 450 FLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 450 ~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.||+++ .||++++|. +++|++++.|+.++.|.....+++.+.++.++.|..+ ++||+++.|+.++.|
T Consensus 204 v~Ig~~v---~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i 276 (343)
T PRK00892 204 VIIGDDV---EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGI 276 (343)
T ss_pred EEECCCc---EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEE
Confidence 3444444 556655553 2444444444444444433333333333333333333 677777777777653
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=115.12 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=16.7
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLM 437 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~ 437 (521)
++|+++++|++ |.|. +++|+.++.||++|+|.....+
T Consensus 27 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 27 CVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred eEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 44444444443 4444 3444444444445444443333
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=116.98 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=34.9
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC-----eEEECCCCEECCCccC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTII 521 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g-----~v~I~~~~~i~~gsvi 521 (521)
.||++++|.+..+ .+++||+++.|.+...+++.+++|+++.|..+ .++||++++|++++.|
T Consensus 203 ~IGa~~~I~r~~~-~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I 268 (324)
T TIGR01853 203 EIGANTTIDRGAF-DDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGV 268 (324)
T ss_pred EECCCCEEecCCc-CcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEcccccc
Confidence 4555555532211 23555555555555555556666666666544 2778888888777654
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-10 Score=114.65 Aligned_cols=109 Identities=11% Similarity=0.197 Sum_probs=77.7
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|+++..... . +.. +.
T Consensus 173 ~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~--~-~~~-~~-------- 233 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE--Q-YRS-FG-------- 233 (369)
T ss_pred CCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh--H-Hhh-cC--------
Confidence 56789999999999998 59999999987 9999999999874 78898887644221 1 111 10
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHH
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (521)
+.++.... ...|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 234 ---v~~i~d~~------~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 234 ---IPLITDSY------LDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred ---CcEEeCCC------CCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 22332221 12677788888776543 46899999999 66655 6677664
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-11 Score=118.98 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=73.1
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccc-cccccccccCCCcceeeCCCCEEe-eeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYET-DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~-~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 475 (521)
++.||.+++|.. +.++ ++.||++|.||++|+|.||.|..+.-+.. .....+.+++|+ .||+.++++ ++.++.+
T Consensus 268 dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~---~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 268 DVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGA---TVGPFARLRPGAVLGAD 344 (460)
T ss_pred cEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCc---ccCCccccCCcCcccCC
Confidence 345555555554 5555 67777777777777777777766544322 333455666666 788888888 8888888
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
+.||..|.+++ ..++++.+.++-.|||+. .||+++.||+||
T Consensus 345 ~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGt 385 (460)
T COG1207 345 VHIGNFVEVKK-ATIGKGSKAGHLTYLGDA--EIGENVNIGAGT 385 (460)
T ss_pred CeEeeeEEEec-ccccCCccccceeeeccc--eecCCceeccce
Confidence 88888888875 556665554444444443 444444444444
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.13 E-value=4e-10 Score=103.87 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=50.0
Q ss_pred cccCCCcccCCCCcCCCceee-------ccccc-ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-------DADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~-~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
++++.+.|.+.+.+.+++.++ ++.+. +++|+++|.|++ +.|.+++|++++.|+.++.+.++++.++
T Consensus 19 ~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 19 WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred EEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC
Confidence 555566665555555544443 34454 589999999998 9999999999999999999999888776
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.5e-10 Score=100.71 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=68.0
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|.|++ |.|.. .+||++|.|+++|.|.... ..++.|+++ +.|++++++.+++|+
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~-----------~~~~~Ig~~---~~I~~~~~i~~~~Ig 82 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH-----------GYPTEIGDY---VTIGHNAVVHGAKVG 82 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC-----------CCCeEECCC---CEECCCcEEECcEEC
Confidence 4567888888887 77775 4999999999999997620 011223333 489999999999999
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCE
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 514 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~ 514 (521)
+++.||.++.+.....+++...++.++.+..+ ..|+++++
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g-~~i~~~~v 122 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG-KEIPDYSL 122 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCCE
Confidence 99999999999765444444444444444433 34444444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=102.29 Aligned_cols=120 Identities=22% Similarity=0.354 Sum_probs=76.6
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe-----eeEECCCCEECCCCEEcceEEECCccccccccccccccC
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 454 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~ 454 (521)
|..++.+.|.+.+. .++.||++|+|++ |.|. ++.||++|.|++++.|.... + ....+|+
T Consensus 5 ig~~~~I~~~a~i~----~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~--~---------~~v~Ig~ 69 (167)
T cd00710 5 IDPSAYVHPTAVVI----GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE--G---------YSVWIGK 69 (167)
T ss_pred eCCCeEECCCCEEE----eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC--C---------CCEEECC
Confidence 33444444544442 3456677777776 5554 36788888888887774210 0 1223334
Q ss_pred CCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 455 GSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++ .|+.++.|. .++|+++|.||.++.|.+ ..+++.+.++.++.|. + +.|++++.+++|+++
T Consensus 70 ~~---~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 70 NV---SIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred Cc---eECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 44 788888887 489999999999998863 5566666666666663 4 577888888888764
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=120.58 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEE
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 508 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~ 508 (521)
++||+++++.....+..+.++|++++|++|.++
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 444444444444444445677778888777433
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=99.39 Aligned_cols=95 Identities=20% Similarity=0.394 Sum_probs=67.8
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcce-----EEECCccccccccccccccCCCcceeeCCCCEEe
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDT-----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 468 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s-----~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~ 468 (521)
.++.||++|.|++ +.|.. ++||++|.|+++|+|.++ ++..+ +.|+.++++.
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~ 76 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLH 76 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEe
Confidence 3567888888886 76663 589999999999999875 44443 4899999999
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
+++|++++.||.++.+..... ++++++|+.+ ++|.++..|++++
T Consensus 77 ~~~Ig~~~~Ig~~~~v~~~~~------ig~~~~ig~~-~~v~~~~~i~~~~ 120 (153)
T cd04645 77 GCTIGDNCLIGMGAIILDGAV------IGKGSIVAAG-SLVPPGKVIPPGS 120 (153)
T ss_pred eeEECCCCEECCCCEEcCCCE------ECCCCEECCC-CEECCCCEeCCCC
Confidence 999999999999999975544 4445555544 4444444444443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=120.24 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=65.9
Q ss_pred cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccc-cccccccCCCcceeeCCCCEEee-e
Q 009971 395 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFLAAKGSVPIGIGKNSHIKR-A 470 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~-~~~~~~~~~~~~~~Ig~~~~i~~-~ 470 (521)
++.+.+++||++|.|++ +.|. ++.||.++.||+++.|.++.++.+..+-... ..++.||+++ .||+++.+.+ .
T Consensus 312 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~---~ig~~~~~~~~~ 388 (456)
T PRK09451 312 YSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNV---NIGAGTITCNYD 388 (456)
T ss_pred CEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCC---EEcCCeEEeccc
Confidence 34456677788888887 7777 7888888888888888888877654321110 0223333333 3444443321 0
Q ss_pred EE-CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEEC
Q 009971 471 II-DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 510 (521)
Q Consensus 471 ii-~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~ 510 (521)
-. +..++||++|+|.....+..+.+++++++|++| ++|.
T Consensus 389 ~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g-s~v~ 428 (456)
T PRK09451 389 GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAG-TTVT 428 (456)
T ss_pred CcccCCCEECCCcEECCCCEEeCCcEECCCCEECCC-CEEc
Confidence 00 013555555555555555566777778888777 4443
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-10 Score=109.59 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=10.7
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
.||++|.|. +|.|..++.||++++|..
T Consensus 178 iIgDnv~IGa~s~I~~Gv~IGdgavIga 205 (272)
T PRK11830 178 IIEDNCFIGARSEVVEGVIVEEGSVLGM 205 (272)
T ss_pred EEcCCCEECCCCEEcCCCEECCCCEEcC
Confidence 344444443 333333344444443333
|
|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.6e-10 Score=103.71 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=81.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
+++|.+||||||.|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +...
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~---------- 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF---------- 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc----------
Confidence 45799999999999999 57999999996 999999999999744 555555444331 2211
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETD 232 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 232 (521)
+ ++++.+.. .++ |...+++.++..+. .+.+++++||+ +...+ +..+++...+.+
T Consensus 61 --g-~~vv~D~~-----~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 --G-LPVVPDEL-----PGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred --C-CceeecCC-----CCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 34443321 222 89999999997775 47999999999 66655 666666655444
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=88.18 Aligned_cols=65 Identities=45% Similarity=0.673 Sum_probs=55.8
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++|.|++ +.|.+++||++|+|++++.|++++++++ +.|++++.+.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 677777776 7777889999999999999999988876 57999999999999999999998
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88865
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.2e-10 Score=104.60 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=73.1
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe-----eeEE
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAII 472 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii 472 (521)
|+++++|.. +.| .+++||++|.|+++|+|.++ ++++. + +.||++|+|+ +++|
T Consensus 13 i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~---------------~---~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQA---------------G---ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred cCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECC---------------C---CEECCCCEEeCCCCCCCEE
Confidence 344444443 332 47889999999999998764 33332 2 4778888774 4789
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.||.++++.+ ..+++.+.+|.++.|..| ++||+++.|++||+|
T Consensus 75 g~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILHG-CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEee-EEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 99999999998865 447777778888888888 889999999999975
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=99.67 Aligned_cols=86 Identities=14% Similarity=0.303 Sum_probs=52.9
Q ss_pred eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEE-----eeeEECCCCEECCCcEEeCC
Q 009971 416 HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKNARIGDNVKIVNS 487 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~~~Ig~~~~i~~~ 487 (521)
++.||++|.|+++|+|.+. +.++ ++ +.|+++|+| .+++|++++.|+.++++.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG---------------~~---~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~- 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIR---------------DG---ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG- 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEEC---------------CC---CEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-
Confidence 5667777777777666541 2222 22 366677766 4567777777777766643
Q ss_pred CccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 488 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 488 ~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
..+++.+.++.+++|..+ ++|+++++|+++++|
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 79 CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 456666666666666666 666666666666643
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=107.87 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=74.9
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-----------
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----------- 468 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~----------- 468 (521)
.|+++++|.. +.|. ++.||++|.|+++|+|...+ ....||++ +.|+++|+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~------------~~I~IG~~---~~I~d~~vI~~~~~~~~g~~~ 118 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV------------NSISVGSG---TNIQDNSLVHVAKTNLSGKVL 118 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC------------CceEECCC---CEECCCCEEEeCCCcccCCCC
Confidence 3566666655 4433 67888889888888887542 01122223 3788888774
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++||++|.||.+++|.+ ..+++.+.++.++.|.+| ++|+++++|++||+|
T Consensus 119 ~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CcEeCCCCEECCCceecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 578999999999998854 567888888888888888 889999999988875
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=99.89 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=128.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHh--------CCCceEEEEecCChHHHHHHHHHhh-
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSRAY- 158 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~--------~gi~~I~Iv~~~~~~~i~~~l~~~~- 158 (521)
.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.. .+|..+++...+..+.+.+|+++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~ 77 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQ 77 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCC
Confidence 58999999999996 68999999998 76 999999999975 3466666666677789999999843
Q ss_pred hccCCCCcCCCcEEEeeccc-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCe-eccc-cHHHHH
Q 009971 159 ASNMGGYKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYRM-DYERFI 225 (521)
Q Consensus 159 ~~~~~~~~~~~~v~vl~~~q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll 225 (521)
....-..|.++.+..+.... ......| +.|.++.+... ++.+.+...+++.+.+.|. +... |.. ++
T Consensus 78 ~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-~l 156 (266)
T cd04180 78 KNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-FI 156 (266)
T ss_pred CCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-HH
Confidence 11110111222122211110 0011123 56777755533 2333344678899999999 5555 543 56
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEE
Q 009971 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (521)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (521)
-.+...+.++.+-+.+....+ ..-|.+...++| .++++.+-|+........ . ..............++..++
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~--~---~~~~~~~~~~~~~~n~~~~~ 230 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVN--N---QIPKDIDDAPFFLFNTNNLI 230 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcccc--c---cCcCCCCceeeccceEEEEE
Confidence 677777888776655543322 234555543224 478887766543221000 0 00000112234678999999
Q ss_pred EeHHHHHHHHh
Q 009971 304 ISKDVMLNLLR 314 (521)
Q Consensus 304 fs~~vl~~ll~ 314 (521)
|+-+.++++++
T Consensus 231 ~~l~~l~~~~~ 241 (266)
T cd04180 231 NFLVEFKDRVD 241 (266)
T ss_pred EEHHHHHHHHH
Confidence 99988887664
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-10 Score=119.45 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=80.0
Q ss_pred cCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccccccccc
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 453 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~ 453 (521)
.+.+.+..++.++.+++|+ +++|.|++||.||.||. |.|.+|+|+.+|+||+||+|+.++++++
T Consensus 325 ~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~-------------- 390 (673)
T KOG1461|consen 325 SHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD-------------- 390 (673)
T ss_pred hhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC--------------
Confidence 3356667777788888887 78899999999999998 9999999999999999999999999987
Q ss_pred CCCcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 454 KGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|++++++. +|+|+-++++|++-++..
T Consensus 391 -----v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ 419 (673)
T KOG1461|consen 391 -----VKIGEGAILKPGSVLGFGVVVGRNFVLPK 419 (673)
T ss_pred -----cEeCCCcccCCCcEEeeeeEeCCCccccc
Confidence 7899999995 888888888888877764
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=87.42 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=54.2
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++|.|++ |.|.+++||++|.|+++|+|.+++++++ +.|+++++|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 577777776 7777889999999999999998888876 57899999988888888888888
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+..
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 77764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-09 Score=106.50 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=79.4
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
.+.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.|... +++|+|+++... .. + +..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~----~~~-------- 217 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-G----TPL-------- 217 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-h----ccc--------
Confidence 5789999999999998 69999999986 9999999998875 889988885431 11 0 000
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHH
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAH 228 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h 228 (521)
..+.++... .+..|...+|+.++..+. .+++++++||+ +.+.+ +..+++.+
T Consensus 218 ~~v~~I~D~------~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 ENLPTLPDR------GESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred cCCeEEeCC------CCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 002232211 223799999999987654 35789999999 66655 77777765
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=88.76 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=61.7
Q ss_pred ccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 396 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 396 ~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
+.+.++.|+++|.|++ |.|.+++|++++.|+++|+|.+++++++ +.|++++++.+|+|++
T Consensus 12 ~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~~v~~~ii~~ 72 (81)
T cd04652 12 TSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKCKLKDCLVGS 72 (81)
T ss_pred CEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCCEEccCEECC
Confidence 3456788999999998 9999999999999999999999999887 6899999999999999
Q ss_pred CCEECCCc
Q 009971 475 NARIGDNV 482 (521)
Q Consensus 475 ~~~Ig~~~ 482 (521)
++.|++++
T Consensus 73 ~~~i~~~~ 80 (81)
T cd04652 73 GYRVEAGT 80 (81)
T ss_pred CcEeCCCC
Confidence 99998874
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=106.29 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=15.4
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEE
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 436 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i 436 (521)
+.||+||.|.. +++||.+|.||++|+|..+..
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~ 161 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVG 161 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcc
Confidence 34444444443 345555555555555544433
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=118.25 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCC
Q 009971 389 PPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 389 ~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~ 465 (521)
+++.+.++.+.+++|+++|.|+. |.+. +++||.++.||.++.+.++++.++..+..... ..+.||+++ .||.++
T Consensus 311 ~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~---~IG~~~ 387 (482)
T PRK14352 311 EGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHS---NIGASS 387 (482)
T ss_pred CCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCc---EECCCc
Confidence 33333334456788999999998 8887 89999999999999888888877654432211 345666666 677777
Q ss_pred EEee--------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 466 HIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 466 ~i~~--------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.+.+ ++||+++.||.++.|.. +.++|++++|++|
T Consensus 388 ~i~~~~~~~~~~~~IGd~~~iG~~~~i~~------~~~Ig~~~~igag 429 (482)
T PRK14352 388 VFVNYDGVNKHRTTIGSHVRTGSDTMFVA------PVTVGDGAYTGAG 429 (482)
T ss_pred EEeccccccCCCCeECCCcEECCCCEEeC------CCEECCCcEECCC
Confidence 6642 66777777777776665 4566667777777
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=102.45 Aligned_cols=99 Identities=12% Similarity=0.273 Sum_probs=69.5
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEE-----eeeEE
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAII 472 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii 472 (521)
|+++++|.. +.| .+++||++|.|+++|+|... ++++. + +.||++|+| .+++|
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~---------------~---t~Ig~~~~I~~~~~~~siI 72 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKE---------------G---ANIQDNCVMHGFPGQDTVV 72 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECC---------------C---CEECCCeEEeccCCCCCeE
Confidence 455666654 333 36788888888888888642 33332 3 378888888 46888
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.||.+++|.+ ..+++.+.++.++.|..+ ++||+++.|++|++|
T Consensus 73 g~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 73 EENGHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CCCCEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 88888888887764 566666667777777777 778888888887754
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=118.22 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=82.4
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCCEEe-eeEECC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDK 474 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 474 (521)
.++.||++|.|++ |.|. ++.||++|+|+++|+|+++++++++.+...+. ..+.+|+++ .||+++.+. +++|++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~---~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGS---DVGPFARLRPGTVLGE 345 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCce---EECCccEEcCCcEECC
Confidence 4577899999987 8887 68899999999999999999998877654433 456677776 778888886 788888
Q ss_pred CCEECCCcEEeC-----CCccC-----CceeecCCeEEcCC------------eEEECCCCEECCCcc
Q 009971 475 NARIGDNVKIVN-----SDSVQ-----EAARETDGYFIKSG------------IVTIIKDALIPSGTI 520 (521)
Q Consensus 475 ~~~Ig~~~~i~~-----~~~~~-----~~~~~~~~~~I~~g------------~v~I~~~~~i~~gsv 520 (521)
++.|++++.|.+ ...++ ..+++|++|.|+.+ .++||+++.|+++++
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 888888665432 11111 12334444444444 146677777777764
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=95.28 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=16.7
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
++.||++|.|+. +.|. ++.||++|.|++++.|.
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 345666666664 4443 34555555555555444
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=96.68 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=72.9
Q ss_pred ceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 400 DSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
+..||++|.|+. |.|.. +.||++|.|+++|+|.++....+.- .......|++++ .|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~~---~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDYV---FIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCcc---EECCCCEEEeeEEcC
Confidence 345666666665 55553 6999999999999998775433210 011345666666 789999999999999
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
++.||++++|.....++..++++++++|.++ .+|+++++++
T Consensus 95 ~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv~ 135 (161)
T cd03359 95 YVHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVVS 135 (161)
T ss_pred CcEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEEe
Confidence 9999999998775545554444444444444 4444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=102.43 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=34.4
Q ss_pred cccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~ 433 (521)
.+++.+.+. .+.+++++.+. ++.+.+++||++|.|+. |.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 444444442 24455555554 35555666666666665 6666666666666666666653
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=89.84 Aligned_cols=55 Identities=27% Similarity=0.461 Sum_probs=50.0
Q ss_pred eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 412 CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 412 ~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|.+++||.+|.|+ ++.|++++++++ +.|+++++|.+++|++++.||+++.+.+
T Consensus 8 ~~i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~~~i~~ 62 (104)
T cd04651 8 GEVKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRNAVIRR 62 (104)
T ss_pred CEEEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCCCEEEe
Confidence 445578999999999 999999999987 6899999999999999999999999964
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=97.42 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=77.8
Q ss_pred ECCCcEEce--eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-----eeEECCC
Q 009971 403 IGEGCVIKN--CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 475 (521)
Q Consensus 403 Ig~~~~I~~--~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 475 (521)
|++.++|.+ ..|++..||+++.|+++++|..-. ..-.||+++ .|.+|++|+ .+.||++
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~------------~~I~IG~~t---NIQDg~ViH~~~~~p~~IG~~ 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV------------EPIRIGART---NIQDGVVIHADPGYPVTIGDD 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccC------------CceEECCCc---eecCCeEEecCCCCCeEECCC
Confidence 556666665 455689999999999999887432 122334444 677777775 3899999
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++||.+++|.+ ..+++.+.||-|+.|.+| ++||++|+|++|++|
T Consensus 79 vtIGH~aivHG-c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV 122 (176)
T COG0663 79 VTIGHGAVVHG-CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALV 122 (176)
T ss_pred cEEcCccEEEE-eEECCCcEEecCceEeCC-cEECCCcEEccCCcc
Confidence 99999999987 677777777777777777 889999999999876
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=100.80 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=19.7
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||++++|. +++++.++.||++|+|.....+.++.++++++.|+.+
T Consensus 134 ~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~ 180 (197)
T cd03360 134 VIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAG 180 (197)
T ss_pred EECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 344444442 3444444444444444433223333444555555555
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=114.92 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=46.8
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 476 (521)
.++.||++|.|++ |.|. +++||++|.|+++|+|.+++++++. .|++++++.+++|++++
T Consensus 267 ~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~-------------------~I~~~~~i~~~~i~~~~ 327 (459)
T PRK14355 267 RGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDV-------------------TVKAGSVLEDSVVGDDV 327 (459)
T ss_pred CCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCC-------------------EECCCeEEeCCEECCCC
Confidence 3566777788776 7776 6899999999999999988887763 45555555555555555
Q ss_pred EECCCcEEeC
Q 009971 477 RIGDNVKIVN 486 (521)
Q Consensus 477 ~Ig~~~~i~~ 486 (521)
.||+++.+..
T Consensus 328 ~ig~~~~i~~ 337 (459)
T PRK14355 328 AIGPMAHLRP 337 (459)
T ss_pred EECCCCEECC
Confidence 4444444433
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=98.07 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=29.2
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.||+++.+. ++.|.. +.||++|+|.....+.+++.++++++|+.+ ++|.++..|+++++
T Consensus 68 ~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 68 IIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred EECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCC-eEECCCcEECCCeE
Confidence 344444443 344432 555555555555555555555555555555 55555555555544
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=114.95 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=80.7
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCC
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNA 476 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~ 476 (521)
++.||++|.|+. +.|. ++.||++|.|+++|.|.+++++++..+.......+.+++++ .||++++|. +++|++++
T Consensus 255 ~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~---~ig~~~~i~~~~~ig~~~ 331 (448)
T PRK14357 255 DVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDV---SVGPFSRLREGTVLKKSV 331 (448)
T ss_pred ceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCc---EECCCcEECCcccccCCc
Confidence 566777777776 6666 68888888888888888888877766654444677777777 788888885 68888888
Q ss_pred EECCCcEEeC-----CCccCC-----ceeecCCeEEcCC------------eEEECCCCEECCCcc
Q 009971 477 RIGDNVKIVN-----SDSVQE-----AARETDGYFIKSG------------IVTIIKDALIPSGTI 520 (521)
Q Consensus 477 ~Ig~~~~i~~-----~~~~~~-----~~~~~~~~~I~~g------------~v~I~~~~~i~~gsv 520 (521)
+||+++.+.+ ...++. ...+|+++.|+.| .++||+++.|+++++
T Consensus 332 ~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~ 397 (448)
T PRK14357 332 KIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSS 397 (448)
T ss_pred EecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCE
Confidence 8888766532 111111 2345566666543 156777777777764
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=84.84 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=51.5
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.|++++.|+ .+++||++|.||++|+|++++++++ +.|+++++|.++++++++.|+++
T Consensus 7 ~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~~ 63 (80)
T cd05824 7 KIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGRW 63 (80)
T ss_pred EECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECCC
Confidence 344444444 3789999999999999999999887 68999999999999999999999
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 64 ~~~~~ 68 (80)
T cd05824 64 TRLEN 68 (80)
T ss_pred cEEec
Confidence 88865
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=113.16 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=72.5
Q ss_pred cCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCC
Q 009971 387 YLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGK 463 (521)
Q Consensus 387 ~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~ 463 (521)
+..++.+..+.+.+++||++|.|+. |.|. +++||++|.|++++.|.++++.++........ ..+.||+++ .||.
T Consensus 303 ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~---~ig~ 379 (458)
T PRK14354 303 IGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENV---NIGC 379 (458)
T ss_pred ECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCce---EEcC
Confidence 3444444445557789999999998 8888 79999999999999999888776543222111 223333333 3444
Q ss_pred CCEEeee--EECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 464 NSHIKRA--IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 464 ~~~i~~~--ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
++.+.+- .-...++||+++++.....+..+.+++++++|+.| .+|.+
T Consensus 380 ~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~-~~v~~ 428 (458)
T PRK14354 380 GTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG-STITK 428 (458)
T ss_pred ceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCC-CEECC
Confidence 4333210 00013455555555555555556677777777777 44433
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=102.25 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCcCCCceeecccccceEECCCcEEceeEEe-eeEECCCCEECCCCEEcceEEEC
Q 009971 384 QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 384 ~~~~~~~~~i~~~~i~~~~Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
..++.|++.+. .++.||++++|....|. ++.||++|.|+.++.|+.++.+|
T Consensus 100 ~~rv~p~a~i~----~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG 151 (269)
T TIGR00965 100 GFRVVPGAAVR----QGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIG 151 (269)
T ss_pred CEEECCCcEEC----CCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEEC
Confidence 44556655442 24556666666643333 45556666555555555444433
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=101.15 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=18.1
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++|+++|.||.++.|..+..+++++.++.+++|..+
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 555666666666555544444444444444444444
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=94.86 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=53.4
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-----eEECCCCEECCCcEEeCCCcc
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKIVNSDSV 490 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i~~~~~~ 490 (521)
+..||+++.|+++++|.++. ..+.||++ +.|+++++|.. ++|++++.|+.++.+.+ ..+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~------------~~~~IG~~---~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 80 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDV------------NPIRIGER---TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI 80 (153)
T ss_pred eEEECCCcEEcCCeEEECCC------------CceEECCC---CEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence 56777777777777666431 01112222 36777777764 47777777777777754 445
Q ss_pred CCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 491 QEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 491 ~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++.+.++.++.+..+ ++|++++.|+++++
T Consensus 81 g~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 81 GDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred CCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 555556656666555 66666766666654
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-09 Score=101.69 Aligned_cols=99 Identities=11% Similarity=0.237 Sum_probs=71.9
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe---------
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK--------- 468 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~--------- 468 (521)
|+.+++|.. +.+ .++.||+++.|+++++|.+. +.+|. + +.|+++|+|+
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~---------------~---t~Ig~~~vI~~~~~~~~~i 123 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGF---------------C---SNVQERCVLHAAWNSPTGL 123 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECC---------------C---CEECCCCEEeecCccccCC
Confidence 344555554 333 36788888888888877643 44443 3 3788888884
Q ss_pred --eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 --RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 --~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++|+++|.||++++|. ...+++.+.||.+++|..| ++|+++++|++|++|
T Consensus 124 ~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 124 PAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 58999999999999885 4667777888888888888 788888888888764
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-08 Score=97.93 Aligned_cols=212 Identities=16% Similarity=0.195 Sum_probs=127.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCC--CcchhHHHHHHhHhCC-----------CceEEEEec-CChHHHHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G--~~pLI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~i~~~ 153 (521)
.++.+||||||.|||| +...||+|+||++ ++|++++.++.+...+ .-.++|.++ +..+.+.+|
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 4689999999999999 4788999999973 2499999999998732 124567777 667899999
Q ss_pred HHHhhhccCCC----CcCCCcEEEeeccc-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCe-ec
Q 009971 154 LSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LY 217 (521)
Q Consensus 154 l~~~~~~~~~~----~~~~~~v~vl~~~q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~ 217 (521)
+.+...|++.. .+.+..+..+.... ++....| +.|.++-.... ++.+.....+++.+.+.|. +.
T Consensus 91 ~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 91 FKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred HHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 99854443311 11122222211110 0011112 56777654433 2233334678999999999 45
Q ss_pred cccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCce
Q 009971 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (521)
Q Consensus 218 ~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (521)
..--..++-.+.++++++.+-+.+....+ ..-|.+. .|..-.++++.|-|....... . +.. ....+.
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~-~~g---------~l~f~~ 238 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-D-ADG---------ELQYNA 238 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-C-cCC---------cEeccc
Confidence 43234477788888999887665543222 2345444 343446888888765543211 0 000 001123
Q ss_pred eeEEEEEEeHHHHHHHHh
Q 009971 297 ASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 297 ~~~GIyifs~~vl~~ll~ 314 (521)
.++.+.+|+-++++++++
T Consensus 239 ~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 239 GNIANHFFSLDFLEKAAE 256 (323)
T ss_pred chHhhheeCHHHHHHHHh
Confidence 455677899888887765
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=111.29 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred ccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccc-cccc
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRF 450 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~-~~~~ 450 (521)
+.+.+.|...+.+..++.+. ++.+.+++||++|.|+. |.|. +++||++|.||++|.|.++++..+....... ...+
T Consensus 277 i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~ 356 (446)
T PRK14353 277 IEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDA 356 (446)
T ss_pred ECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCc
Confidence 33444444444455555553 45566799999999998 8888 8999999999999999887777653321111 1234
Q ss_pred cccCCCcceeeCCCCEEeee--EECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 451 LAAKGSVPIGIGKNSHIKRA--IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~--ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++ .||.++++.+. ....++.||++++|+....+..+.++|++++|++|
T Consensus 357 ~ig~~~---~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~ 410 (446)
T PRK14353 357 TIGAGA---NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASG 410 (446)
T ss_pred EEcCCc---EECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCC
Confidence 444444 45555544110 00224444444444444444455677777777777
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=113.24 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCC
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~ 465 (521)
..++.+..+.+.+++||++|.|++ |.|. +++||.+|.||+++.|.++++..+..+.. .+.++ . +.||++|
T Consensus 301 ~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~----~~~~~--~--~~i~~~~ 372 (450)
T PRK14360 301 GENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNH----LSYIG--D--ATLGEQV 372 (450)
T ss_pred cCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEecc----ceecC--C--ceecCCc
Confidence 344444444456788999999998 8887 79999999999999999988877654332 12221 1 3466666
Q ss_pred EEe-eeEE-------CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 466 HIK-RAII-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 466 ~i~-~~ii-------~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
.|. ++++ +.+++||++|+|+....+..+.+++++++|++| ++|-+
T Consensus 373 ~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~-~~v~~ 425 (450)
T PRK14360 373 NIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAG-STITK 425 (450)
T ss_pred EECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCC-CEECc
Confidence 665 4444 347899999999988888888999999999998 44443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=93.42 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=56.0
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEee-----eEEC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIID 473 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~ 473 (521)
+|.++++|. .++.||++|.|+++|.|... +.+++ + +.|+++|.|.. ++|+
T Consensus 8 ~i~~~~~i~----~~v~iG~~~~I~~~a~I~~~~~~i~Ig~---------------~---~~Ig~~~~I~~~~~~~~~Ig 65 (154)
T cd04650 8 YVHPTSYVI----GDVVIGELTSVWHYAVIRGDNDSIYIGK---------------Y---SNVQENVSIHTDHGYPTEIG 65 (154)
T ss_pred EECCCCEEE----eeEEECCCCEEcCCeEEEcCCCcEEECC---------------C---CEECCCCEEEeCCCCCeEEC
Confidence 344444443 35677777777777777654 33332 1 36666666653 6677
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++.|+.++++.+ ..+++.+.++.++.+..+ ++|++++.|++++.
T Consensus 66 ~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 66 DYVTIGHNAVVHG-AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CCCEECCCcEEEC-cEECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 7777777776643 345555555555555555 55666666665553
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=83.04 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=58.2
Q ss_pred cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-eEE
Q 009971 395 DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AII 472 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii 472 (521)
++.+.+++||++|.|++ +.|.+++|++++.|+++|.|.+++++++ +.|++++.+.+ +++
T Consensus 11 ~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~~i~~~~~i 71 (79)
T cd03356 11 NAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENVRVVNLCII 71 (79)
T ss_pred CCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCCEEcCCeEE
Confidence 34456788999999997 9999999999999999999999998876 58999999986 888
Q ss_pred CCCCEECC
Q 009971 473 DKNARIGD 480 (521)
Q Consensus 473 ~~~~~Ig~ 480 (521)
+++++|++
T Consensus 72 g~~~~i~~ 79 (79)
T cd03356 72 GDDVVVED 79 (79)
T ss_pred CCCeEECc
Confidence 88888874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=94.89 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.|+.++.+. ++.|++++.||.++++.. +..+++++.|+++
T Consensus 143 ~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~~i~~~~~i~~~ 183 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEGVFIGAGATIIQ------GVTIGAGAIVGAG 183 (201)
T ss_pred EECCCCEEeCCcEECCCCEECCCCEEeC------CCEECCCCEECCC
Confidence 445555544 455555555555555543 3444555555555
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=91.26 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=22.6
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEEC
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
+.|+.++.|++ +.|. ++.|+.++.||++|.|.....++
T Consensus 26 ~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 26 SYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 45566666665 5555 46666666666666665554444
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=89.09 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=46.6
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
+++||++|.|+. +.|. +++||++|.|++++.|.+..+.+. .+..++.+.+++|+++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 466788888875 6664 677777777777777766554442 344566777788888888
Q ss_pred ECCCcEEeCC
Q 009971 478 IGDNVKIVNS 487 (521)
Q Consensus 478 Ig~~~~i~~~ 487 (521)
||.++.+...
T Consensus 76 Ig~~~~v~~~ 85 (119)
T cd03358 76 IGANATILPG 85 (119)
T ss_pred ECcCCEEeCC
Confidence 8888777653
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-09 Score=105.89 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=80.6
Q ss_pred CcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCC
Q 009971 379 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 456 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~ 456 (521)
+.+..++.+.+.+++. ++.|+.|+||++|.||+ ++|.+|+|.+++.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 5566677888888887 77889999999999998 9999999999999999999999999886
Q ss_pred cceeeCCCCEEeeeEECCCCEECCCcEEeCC
Q 009971 457 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 487 (521)
Q Consensus 457 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 487 (521)
+.||++|.+.+|+|+.+-+|.+.....+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 58999999999999999999977766653
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=93.64 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=35.5
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.||++|.|+. +.+. ...+..+.||++|.|.....+.. .+.||+++ .||.++.|.++.|+++|.||
T Consensus 43 v~IG~~~~I~~~~~i~-~~~~~~v~Ig~~~~I~~~~~i~g---------~~~Ig~~~---~Ig~~~~I~~~~Ig~~~~Ig 109 (167)
T cd00710 43 IIIGANVNIQDGVVIH-ALEGYSVWIGKNVSIAHGAIVHG---------PAYIGDNC---FIGFRSVVFNAKVGDNCVIG 109 (167)
T ss_pred EEECCCCEECCCeEEE-ecCCCCEEECCCceECCCCEEeC---------CEEECCCC---EECCCCEEECCEECCCCEEc
Confidence 44555555553 2221 11144556666666655433321 23444444 55555666556666666666
Q ss_pred CCcEE
Q 009971 480 DNVKI 484 (521)
Q Consensus 480 ~~~~i 484 (521)
.++.|
T Consensus 110 ~~s~i 114 (167)
T cd00710 110 HNAVV 114 (167)
T ss_pred CCCEE
Confidence 66555
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-09 Score=97.23 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=78.1
Q ss_pred ccCCCCcCCCceee-cccccc-eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCC
Q 009971 381 IYTQPRYLPPSKML-DADVTD-SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 456 (521)
Q Consensus 381 i~~~~~~~~~~~i~-~~~i~~-~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~ 456 (521)
|.+++.++|++++. +.+|+. |+||++++|++ +.|. |++|--.++||.+++|...-.+|.+- ....-....
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~p------QdlKykge~ 79 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDP------QDLKYKGEP 79 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCC------cccccCCCc
Confidence 34444444544442 222333 66666666665 6666 66666667777777776666555432 011111111
Q ss_pred cceeeCCCCEEe-eeEE------C-CCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCc
Q 009971 457 VPIGIGKNSHIK-RAII------D-KNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 519 (521)
Q Consensus 457 ~~~~Ig~~~~i~-~~ii------~-~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gs 519 (521)
.-+.||+++.|+ .+.| | .-++||+++.+..+.++..+|++|++|++..+. |.|++.++||..|
T Consensus 80 T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 80 TRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred eEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 124566666665 3333 2 245788888888888888888888888887773 6677777776654
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.8e-09 Score=82.54 Aligned_cols=78 Identities=28% Similarity=0.350 Sum_probs=60.2
Q ss_pred EECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeec
Q 009971 418 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARET 497 (521)
Q Consensus 418 ~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~ 497 (521)
+||+++.|+++|.|.++++..+ +.|+++++|.+++|++++.|+++++|. ...+.+.++++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEEC
Confidence 4789999999999998877765 689999999999999999999999996 34455555555
Q ss_pred CCeEEcCCeEEECCCCEEC
Q 009971 498 DGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 498 ~~~~I~~g~v~I~~~~~i~ 516 (521)
.+++|+.+ ++|++++.||
T Consensus 61 ~~~~i~~~-~~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPG-SLISFGVVIG 78 (79)
T ss_pred CCCEECCC-CEEeCCcEeC
Confidence 55555555 5555555554
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=96.07 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=11.9
Q ss_pred cCCeEEcCCeEEECCCCEECCCcc
Q 009971 497 TDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 497 ~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+.++.+..+ ++|+++++|++|++
T Consensus 163 g~~~~v~~~-~~i~~~~~i~~~~~ 185 (201)
T TIGR03570 163 GAGATIIQG-VTIGAGAIVGAGAV 185 (201)
T ss_pred CCCCEEeCC-CEECCCCEECCCCE
Confidence 334555555 55555555555554
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=108.08 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=67.0
Q ss_pred cccCCCcccCCC-----CcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc
Q 009971 374 FYDRSAPIYTQP-----RYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD 447 (521)
Q Consensus 374 ~~~~~~~i~~~~-----~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~ 447 (521)
++++.+.|+..+ .+.+++.+.++.+.+++||++|.|++ |.|.+|.||++|.|+... |.++.+....+.
T Consensus 267 ~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i----- 340 (430)
T PRK14359 267 ELEEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYL----- 340 (430)
T ss_pred EECCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccc-----
Confidence 444444444433 34555555455566788888888886 777777777777666633 344333332221
Q ss_pred ccccccCCCcceeeCCCCEEe--------eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 448 RRFLAAKGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 448 ~~~~~~~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
..+.||+++ .||.++.+. .++||++|.||.++.|. .+.++|++++|++|
T Consensus 341 ~d~~Ig~~~---~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~------~~~~ig~~~~i~~g 397 (430)
T PRK14359 341 GDCEIDEGT---NIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLV------APVNIEDNVLIAAG 397 (430)
T ss_pred cCCEECCCC---EECCCceEccccCccCcCCEECCCeEEcCCCEEe------CCcEECCCCEECCC
Confidence 234455555 555555543 14555555555555554 56777778888888
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=87.95 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=139.3
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
||+.-|||+|.|.++|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+ +++.|.+.-.+ |..+
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~-ygak---- 66 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK-YGAK---- 66 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH-hCcc----
Confidence 457789999999999886 3999999987 99999999999998 78888776 55555554443 2111
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-e-ccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
+-+..+.....+ ...|.+++.+++..+.. ..+.++.+.+-. | ...++++.++.+.+++.+-.+.+.+.+
T Consensus 67 -----~~~~Rp~~LA~D---~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e 137 (228)
T COG1083 67 -----VFLKRPKELASD---RASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE 137 (228)
T ss_pred -----ccccCChhhccC---chhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence 111111111111 02344455555555543 234477777776 4 456799999999988888777777765
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
...-..| .. .+|.+..+-+.+.... +..++ -..|..+..+|+++++.|. ++ ..-|
T Consensus 138 ~~p~k~f---~~-~~~~~~~~~~~~~~~~-rrQ~L-------------pk~Y~~NgaiYi~~~~~l~---e~----~~~f 192 (228)
T COG1083 138 HHPYKAF---SL-NNGEVKPVNEDPDFET-RRQDL-------------PKAYRENGAIYINKKDALL---EN----DCFF 192 (228)
T ss_pred cchHHHH---Hh-cCCceeecccCCcccc-ccccc-------------hhhhhhcCcEEEehHHHHh---hc----Ccee
Confidence 4221222 22 3477777776654321 11111 1246778899999998764 21 1112
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~ 365 (521)
+.+...|..+ ....||++..|+..|+..+..
T Consensus 193 -----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 193 -----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 2344556665 458999999999999887654
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=96.98 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=124.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHhC------------C-CceEEEEe-cCChHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS------------N-ISKIYVLT-QFNSASL 150 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~~------------g-i~~I~Iv~-~~~~~~i 150 (521)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... + .-.++|.+ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 46999999999999997 58999999994 55 9999999999764 1 12445554 4677899
Q ss_pred HHHHHHhhhccCCC----CcCCCcEEEeecc-c-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCC
Q 009971 151 NRHLSRAYASNMGG----YKNEGFVEVLAAQ-Q-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGD 214 (521)
Q Consensus 151 ~~~l~~~~~~~~~~----~~~~~~v~vl~~~-q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD 214 (521)
.+|+.+...+++.. .|.++.+..+... . .+..-.| +.|.++-.... ++.+.....+++.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 99998744343211 1122212211110 0 0000112 45776644432 233344467889999999
Q ss_pred ee-ccccHHHHHHHHHhcCC-cEEEEEEecCcccCcceeEEEe-CCCCCeEEeeeCCChhhhhhcccccccccCCchhhc
Q 009971 215 HL-YRMDYERFIQAHRETDA-DITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAK 291 (521)
Q Consensus 215 ~l-~~~dl~~ll~~h~~~~a-diti~~~~~~~~~~~~~g~v~~-d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~ 291 (521)
.+ ...--..++-++.+.++ ++.-.+.+... ...-|++.. |..-.|+++.|-++..... .. .....
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~---------~~~g~ 328 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DE---------LLTGE 328 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-cc---------ccCCe
Confidence 95 54323346677777777 65444433322 234566654 3333689998866543211 00 00001
Q ss_pred cCCceeeEEEEEEeHHHHHHHHh
Q 009971 292 EMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 292 ~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
..-...++..++|+-+++.++..
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ecccccceEEEEEEHHHHHHHhh
Confidence 11246788999999999987653
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=96.89 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=40.2
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~ 433 (521)
.+++.+.+...+.+.+.+.+. ++.+ .+++||++|.|+. +.|. +++||++|.||.++.|.+
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 445555555555555555554 3444 3578888888886 7775 788888888888887765
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=87.06 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=12.0
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.||.++.| +..|++++.||+++++..
T Consensus 81 ~IG~ga~I-gv~IG~~~vIGaGsvV~k 106 (147)
T cd04649 81 LLGANSGI-GISLGDNCIVEAGLYVTA 106 (147)
T ss_pred EECCCCEE-eEEECCCCEECCCCEEeC
Confidence 44444444 344444444444444443
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=78.39 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=54.9
Q ss_pred cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-eEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~ 476 (521)
.+++|+++|.|++ |.|.+++|++++.|++++.|.+++++.+ +.|++++.+.+ ++|++++
T Consensus 16 ~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~ 76 (80)
T cd05824 16 PNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDV 76 (80)
T ss_pred CCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCce
Confidence 3578899999987 9999999999999999999999999876 58999999985 8888887
Q ss_pred EECC
Q 009971 477 RIGD 480 (521)
Q Consensus 477 ~Ig~ 480 (521)
+||+
T Consensus 77 ~i~~ 80 (80)
T cd05824 77 TIKD 80 (80)
T ss_pred EECC
Confidence 7764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=97.45 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=42.3
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEE-eeeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig~ 480 (521)
.||+|++|.+. .+++||++|.||++|.|..++.+++..- ....+...||+++ .||.++.| .++.||++|.||+
T Consensus 168 ~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~-~~~~r~piIGd~V---~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 168 KIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK-ACGDRHPKIGDGV---LIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred eecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc-ccCCCccEECCCe---EECCeeEECCCCEECCCCEECC
Confidence 34555544431 1478888888888888888877775210 0111334444444 45555544 2455555555555
Q ss_pred CcEEe
Q 009971 481 NVKIV 485 (521)
Q Consensus 481 ~~~i~ 485 (521)
++++.
T Consensus 242 gSVV~ 246 (294)
T PLN02694 242 GSVVL 246 (294)
T ss_pred CCEEC
Confidence 55544
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-06 Score=87.46 Aligned_cols=209 Identities=14% Similarity=0.224 Sum_probs=128.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCCh-HHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFNS-ASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~~-~~i~~~l~~~~~~ 160 (521)
-.++.+|.||||.||||+ ...||.++|+....++++..++.+.. .|.. ..+|-++++. +...++|++ +++
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 367999999999999999 57899999995445899988888754 4543 3466666554 678899987 322
Q ss_pred -cCC-CCcCCCcEEEee-cccCC-------CCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 161 -NMG-GYKNEGFVEVLA-AQQSP-------ENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 161 -~~~-~~~~~~~v~vl~-~~q~~-------~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
... ..|.+....-+. ....+ .+..| +.|.++-.... ++.+.....+++.+.+.|.+.. .|. .
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-K 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-H
Confidence 110 011111111111 00000 11124 56776644432 2333344678999999999765 453 4
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (521)
++.++.++++++++=+.+....+. .-|.+. .|..-+++++.+-|+..... .+ ....-.+.++..+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc------------ccccceeeeeeeE
Confidence 778888889888776665332222 235444 33334688998877654321 00 0112358999999
Q ss_pred EEeHHHHHHHHh
Q 009971 303 VISKDVMLNLLR 314 (521)
Q Consensus 303 ifs~~vl~~ll~ 314 (521)
.|+-+.++++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=84.44 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.++.||++++|.+...+.+...+++++.|+++
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccC
Confidence 35566666666655555444445555555544
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-08 Score=90.05 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=21.4
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
..||++|.|++ +.|. .+.||++|.|+++|.|..
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~ 108 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCT 108 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEEC
Confidence 45666666665 5554 467777777777777643
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-07 Score=85.82 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=18.6
Q ss_pred eCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 461 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 461 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|+.++.+. +++|+++|.||.++.+.....+++.+.++.+++|..+
T Consensus 141 i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 141 IAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred ECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 33333333 3344444444444444433344444444444444433
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-07 Score=78.70 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=46.3
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
+++||++|.|++ |.|. +++||++|.||. .|.++++++. +.|+++++|.+++|+++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 355677777765 5555 467777777754 4667777765 4678888888888888888
Q ss_pred ECCCcEEeC
Q 009971 478 IGDNVKIVN 486 (521)
Q Consensus 478 Ig~~~~i~~ 486 (521)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888877755
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=92.33 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 009971 189 TADAVRQY 196 (521)
Q Consensus 189 t~~al~~~ 196 (521)
..+.+..+
T Consensus 29 ~~~~~~~~ 36 (341)
T TIGR03536 29 PSAELVAA 36 (341)
T ss_pred hhHHHHHH
Confidence 33444443
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-07 Score=84.14 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=9.8
Q ss_pred eeEECCCCEECCCCEEcc
Q 009971 416 HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~ 433 (521)
+..||+++.|+++|.|..
T Consensus 21 ~I~ig~~~~I~~~~~I~g 38 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRG 38 (161)
T ss_pred CEEECCceEEcCCCEEeC
Confidence 345555555555555543
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=99.07 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=75.9
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 452 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~ 452 (521)
++++.+.+ ..+.+.+++.+.+ .+.+|+||++|.|++ |.|.+|+|+++|.|+++|+|.++++..+
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------- 348 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------- 348 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------
Confidence 67777777 4566788887753 467899999999998 9999999999999999999999998876
Q ss_pred cCCCcceeeCCCCEEee-----eEECCCCEECCCcEE
Q 009971 453 AKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKI 484 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i 484 (521)
+.|++++++.+ .+||++++|+++++|
T Consensus 349 ------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 349 ------AVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred ------CEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 58999999976 788888888888766
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-07 Score=75.97 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 476 (521)
.+++|++++.|+. +.+. .++||+++.|++++.|++.+.++. + +.||. .|.+|+|..++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~---------------~---~~Ig~--~i~~svi~~~~ 69 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGP---------------T---CKIGG--EVEDSIIEGYS 69 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECC---------------C---CEECC--EECccEEcCCC
Confidence 3566777777775 5554 467777777777766654333332 1 24442 34556666666
Q ss_pred EECCCcEEe
Q 009971 477 RIGDNVKIV 485 (521)
Q Consensus 477 ~Ig~~~~i~ 485 (521)
.|+.++.|.
T Consensus 70 ~i~~~~~lg 78 (101)
T cd05635 70 NKQHDGFLG 78 (101)
T ss_pred EecCcCEEe
Confidence 655555554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=91.18 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=22.3
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
+.||+|++|++. .+.+||.+|.||++|.|...+.+++
T Consensus 148 a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 148 AKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred ceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEec
Confidence 445666666540 1357777777777777766555553
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=86.20 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=35.1
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
+...+.+.||..+.. -.++.||++++|+. |.|. +..||++|.|+++|.|..
T Consensus 58 ig~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 58 VGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred cCCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 345566777766531 13567888888876 6664 378888888888888864
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-07 Score=84.93 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=19.5
Q ss_pred ceEECCCcEEceeEEeeeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~ 432 (521)
++.++.+|.+..-......||+++.|++++.|.
T Consensus 49 ~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~ 81 (192)
T PRK09677 49 GFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIA 81 (192)
T ss_pred ceEECCCeEEEecCCCeEEECCCCEECCCcEEc
Confidence 344555555532001246888888888888776
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=87.80 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=15.3
Q ss_pred CcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 456 SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 456 ~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|+.||+||.|. |+.+..++.+|++|+|..
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~a 211 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA 211 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEec
Confidence 3345555555554 444444444444444444
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.1e-07 Score=88.39 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=7.5
Q ss_pred EEECCCCEECCCcc
Q 009971 507 VTIIKDALIPSGTI 520 (521)
Q Consensus 507 v~I~~~~~i~~gsv 520 (521)
+.||++|+|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 44555555555554
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-07 Score=91.81 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=45.0
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||.|+.|... .+++||+++.||++|.|..++.+++...+.+ .+.+.||+++ .||.++.|. ++.||+++.||+
T Consensus 234 ~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~V---~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 234 KIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDGV---LIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred EECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCCe---EECCceEEECCeEECCCCEECC
Confidence 34555555530 1356777777777777766666554221111 2345566665 666666663 666777777777
Q ss_pred CcEEeC
Q 009971 481 NVKIVN 486 (521)
Q Consensus 481 ~~~i~~ 486 (521)
++++..
T Consensus 308 gSVV~~ 313 (360)
T PLN02357 308 GSVVLK 313 (360)
T ss_pred CCEECc
Confidence 766653
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-07 Score=76.03 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=24.3
Q ss_pred EECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 402 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
.||++|+|++ +.|. ++.||++|.|+++|+|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4666666665 5554 4889999999999988876
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-07 Score=93.57 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=15.3
Q ss_pred eeeCCCCEEeeeEECCCCEECCCcEEe
Q 009971 459 IGIGKNSHIKRAIIDKNARIGDNVKIV 485 (521)
Q Consensus 459 ~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 485 (521)
+.|+++|+|.+|+|++++.|++++.+.
T Consensus 311 ~~I~~~~~i~~sii~~~~~I~~~~~i~ 337 (369)
T TIGR02092 311 VHVGKDALIKNCIIMQRTVIGEGAHLE 337 (369)
T ss_pred CEECCCCEEEeeEEeCCCEECCCCEEE
Confidence 355555555555555555555555554
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-07 Score=93.02 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.+...+.|++ |.|.+++|+..|.||++|+|++++++++ +.|++|+ .|+ +|.|.+|+|+++++|+
T Consensus 249 ~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~----------~~Ig~~~---~i~-~~~i~~s~i~~~~~i~ 314 (353)
T TIGR01208 249 SKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPY----------TSIGEGV---VIR-DAEVEHSIVLDESVIE 314 (353)
T ss_pred CEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCC----------CEECCCC---EEe-eeEEEeeEEcCCCEEc
Confidence 33444444544 4445666766777777777777777654 2233333 233 3344455555555555
Q ss_pred CCc-EEeCCCccCCceeecCCeEEcCC-eEEECCCCEE
Q 009971 480 DNV-KIVNSDSVQEAARETDGYFIKSG-IVTIIKDALI 515 (521)
Q Consensus 480 ~~~-~i~~~~~~~~~~~~~~~~~I~~g-~v~I~~~~~i 515 (521)
.+. .+. ..-+++.++++.++.|... ..++|+++.|
T Consensus 315 ~~~~~~~-~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~ 351 (353)
T TIGR01208 315 GVQARIV-DSVIGKKVRIKGNRRRPGDLRLTIGDYSQV 351 (353)
T ss_pred CCcceee-cCEEcCCCEECCCcccccccceEEcCCcee
Confidence 442 332 2233333444444444321 1345555544
|
Alternate name: dTDP-D-glucose synthase |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-07 Score=93.34 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCc
Q 009971 404 GEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNV 482 (521)
Q Consensus 404 g~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~ 482 (521)
.+.++|+. +.|.+|+||++|.|+++ .|.+++++.+ +.|+++|+|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 34444444 44455666666666654 5555555544 466666666666666666666666
Q ss_pred EEe
Q 009971 483 KIV 485 (521)
Q Consensus 483 ~i~ 485 (521)
.+.
T Consensus 341 ~l~ 343 (361)
T TIGR02091 341 VIR 343 (361)
T ss_pred EEe
Confidence 664
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-07 Score=71.02 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=17.0
Q ss_pred eeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 494 ARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 494 ~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.++.|..+ ++|++++.|+++++|
T Consensus 51 ~~v~~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 51 VEIGANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCCEEeCC-CEECCCCEECcCcEe
Confidence 333345556556 677777777777764
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=80.44 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=19.1
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
.||++++|++. .+++|++++.||++|.|...+.++.
T Consensus 69 ~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 69 RIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred EECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 34555555420 1356666666666666665555543
|
Cysteine biosynthesis |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=78.00 Aligned_cols=209 Identities=14% Similarity=0.210 Sum_probs=126.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCC-hHHHHHHHHHhhhcc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFN-SASLNRHLSRAYASN 161 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~-~~~i~~~l~~~~~~~ 161 (521)
.++.+|+||||.||||+ ...||.|+||..++++++..++.+.. .|.. ..+|-+++. .+...+||++ +.+.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 36789999999999997 57899999997667999999999854 3432 456666655 4778999987 3211
Q ss_pred -CC-CCcCCCcEEEeec------c--cCCCCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCeecc-ccHHHH
Q 009971 162 -MG-GYKNEGFVEVLAA------Q--QSPENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (521)
Q Consensus 162 -~~-~~~~~~~v~vl~~------~--q~~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (521)
.. ..|.++.+.-+.. . ..+....| +.|.++-..... +.+.....+++.+.+.|.+.. .|. .+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~ 156 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI 156 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence 00 0111111110000 0 00111122 457766443322 233334678999999999765 453 47
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEE
Q 009971 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (521)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (521)
+-+|..+++++++=+.+....+ ..-|.+. .|..-+|+++.|-|...... .. + .....+.+++.+.
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEE
Confidence 8888889999877555433222 2344444 34334688888887754321 00 0 0113478999999
Q ss_pred EeHHHHHHHHhh
Q 009971 304 ISKDVMLNLLRD 315 (521)
Q Consensus 304 fs~~vl~~ll~~ 315 (521)
|+-+.++++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999988877653
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=80.86 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred ceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 400 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
+..||++|+|+. +.|. +.+||+++.|+++|.|..+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 455777777776 5554 4688888888888887643
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=84.83 Aligned_cols=109 Identities=21% Similarity=0.292 Sum_probs=56.7
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeC
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG 462 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig 462 (521)
.|+.|++.++ ..+.|++|++|.. +.|. ++.++..+.|.-++.++.|...| ++++||.|+...++=
T Consensus 109 ~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VG---------kn~higgGa~I~GVL 175 (271)
T COG2171 109 VRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVG---------KNSHIGGGASIGGVL 175 (271)
T ss_pred eeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEEC---------CCcccCCcceEeEEe
Confidence 5666666553 2355666666665 5555 66666666666666666666555 244444444111111
Q ss_pred CCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCC
Q 009971 463 KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA 513 (521)
Q Consensus 463 ~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~ 513 (521)
+.-.-.-++|++||.||+|+.+.. +..+|+||+|..| +.|++++
T Consensus 176 ep~~a~Pv~IgdncliGAns~~ve------GV~vGdg~VV~aG-v~I~~~t 219 (271)
T COG2171 176 EPLQANPVIIGDNCLIGANSEVVE------GVIVGDGCVVAAG-VFITQDT 219 (271)
T ss_pred cCCCCCCeEECCccEeccccceEe------eeEeCCCcEEecc-eEEeCCc
Confidence 111112367777777777765543 2344444444444 4444333
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=76.55 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.9
Q ss_pred eEECCCCEECCCCEEc
Q 009971 417 SVVGLRSCISEGAIIE 432 (521)
Q Consensus 417 s~ig~~~~Ig~~~~I~ 432 (521)
++|..++.||++|.|.
T Consensus 26 avV~~~a~IG~~~iIn 41 (147)
T cd04649 26 GFVNFNAGTLGNCMVE 41 (147)
T ss_pred CEEccCCEECCCeEEC
Confidence 3444444444444443
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=81.37 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=16.5
Q ss_pred ECCCcEEce-eEE---eeeEECCCCEECCCCEEc
Q 009971 403 IGEGCVIKN-CKI---HHSVVGLRSCISEGAIIE 432 (521)
Q Consensus 403 Ig~~~~I~~-~~I---~~s~ig~~~~Ig~~~~I~ 432 (521)
+|+++.|.. +.+ .+..||+++.|+.+|.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~ 91 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV 91 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe
Confidence 556666654 332 145666666666666553
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=85.00 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.2
Q ss_pred eeEECCCCEECCCCEE
Q 009971 416 HSVVGLRSCISEGAII 431 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I 431 (521)
+++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555555
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=93.49 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=48.7
Q ss_pred EEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+.+|+||++|.| ++|.|++|+++.+ +.||++|.|.+|+|+++|.||+++.|.+
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 4568999999999 7999999998886 6899999999999999999999999964
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=68.18 Aligned_cols=68 Identities=35% Similarity=0.446 Sum_probs=41.2
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEE
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 478 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 478 (521)
.||++|.|+. +.|. +++||+++.|+++|.|.++...+. ..++.||+++.+. +++|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~----------------~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNE----------------KNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCc----------------cCCcEECCCcEECCCCEEeCCCEE
Confidence 5677777776 6666 488888899888888887643210 0123555555554 3555555555
Q ss_pred CCCcEEe
Q 009971 479 GDNVKIV 485 (521)
Q Consensus 479 g~~~~i~ 485 (521)
|+++.|.
T Consensus 66 g~~~~i~ 72 (78)
T cd00208 66 GDNAVIG 72 (78)
T ss_pred CCCCEEC
Confidence 5555544
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=81.49 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=24.2
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
+.||+++.|.. +.|. +..||+++.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 45667777765 5554 578899999999988874
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=92.85 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=40.1
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC------------
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK------------ 474 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~------------ 474 (521)
+.+..+.|.++.||++|.| ++|.|++|+++++ +.||+++.|.+|+|..
T Consensus 299 a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~~~~~ 358 (429)
T PRK02862 299 SKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSEEREE 358 (429)
T ss_pred ccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccccccc
Confidence 3333344455666666666 5566666555554 4566666666665543
Q ss_pred -------CCEECCCcEEeCCCccCCceeecCCeEE
Q 009971 475 -------NARIGDNVKIVNSDSVQEAARETDGYFI 502 (521)
Q Consensus 475 -------~~~Ig~~~~i~~~~~~~~~~~~~~~~~I 502 (521)
++.||++|.|.+ .-+++.+++|+++.+
T Consensus 359 ~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 359 LRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRI 392 (429)
T ss_pred ccccCCcccEECCCCEEEE-EEECCCcEECCCcEE
Confidence 466666666643 334444444444444
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=81.16 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEee---eEECCCCEECCCCEEcc
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIED 433 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~---s~ig~~~~Ig~~~~I~~ 433 (521)
+.+.||..... -.+..||++++|+. |+|.+ ..||++|.|+++|.|..
T Consensus 60 ~~i~~~~~~~~--g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t 110 (183)
T PRK10092 60 AYIEPTFRCDY--GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYT 110 (183)
T ss_pred EEEeCCEEEee--cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEc
Confidence 44555553310 13566777777775 55553 37888888888877763
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=80.53 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=53.2
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||.|.+|.+. ...+||+-+.||++|.|..++.+|..--|.. .++..||++. .||.++.|- +-.||+|+.||+
T Consensus 75 ~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V---~IGagAkILG~I~IGd~akIGA 148 (194)
T COG1045 75 KIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGV---YIGAGAKILGNIEIGDNAKIGA 148 (194)
T ss_pred eECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCe---EECCCCEEEcceEECCCCEECC
Confidence 36777777751 1467777777777777777776665433322 3566777776 778777764 777888888888
Q ss_pred CcEEeC
Q 009971 481 NVKIVN 486 (521)
Q Consensus 481 ~~~i~~ 486 (521)
|+++..
T Consensus 149 ~sVVlk 154 (194)
T COG1045 149 GSVVLK 154 (194)
T ss_pred CceEcc
Confidence 877764
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=92.70 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEeeeEECC----------------C---CEECCCCEEcceEEECCccccc
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGL----------------R---SCISEGAIIEDTLLMGADYYET 444 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~----------------~---~~Ig~~~~I~~s~i~~~~~~e~ 444 (521)
+.+.+++.+.++.|.+|+|+++|.|++ |.|.+++|.. + ++||++|+|+++++..+
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~----- 390 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN----- 390 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC-----
Confidence 667888887777788999999999998 9999877744 2 38999999998887665
Q ss_pred cccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 445 DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 445 ~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.||+++.|. ..-+.+..++|+++.+.+
T Consensus 391 --------------v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~ 419 (436)
T PLN02241 391 --------------ARIGKNVVIINKDGVQEADREEEGYYIRS 419 (436)
T ss_pred --------------CEECCCcEEecccccCCccccccccEEeC
Confidence 5788888776 335555666666666654
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=84.85 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=9.2
Q ss_pred eeEECCCCEECCCCEEcc
Q 009971 416 HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~ 433 (521)
++.||++|.|..+++|++
T Consensus 167 ~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 167 TAVIENDVSILQSVTLGG 184 (273)
T ss_pred CCEECCCCEEcCCcEEec
Confidence 345555555555555543
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=87.85 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=48.0
Q ss_pred cCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 382 YTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 382 ~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
..++-+..+|.+.+ .|.+|+|+.++.|+. |.|.+|+|.++|.||+||+|+.++|-.+
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~ 351 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN 351 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC
Confidence 35667788888877 788999999999998 9999999999999999999998887554
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.4e-06 Score=76.36 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.5
Q ss_pred ceeecCCeEEcCC
Q 009971 493 AARETDGYFIKSG 505 (521)
Q Consensus 493 ~~~~~~~~~I~~g 505 (521)
++++|++++|+.|
T Consensus 136 gv~Ig~~~~Vgag 148 (169)
T cd03357 136 GVTIGDNSVIGAG 148 (169)
T ss_pred CCEECCCCEECCC
Confidence 3444555555555
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-06 Score=86.40 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=38.6
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||+|+.|.+. .+++||.+|.||++|.|...+.++....+.. .+...||+++ .||.+++|- ++.||+++.||+
T Consensus 213 ~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g-~r~p~IGd~V---~IGagA~IlG~V~IGd~aiIGA 286 (355)
T PLN02739 213 RIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKETG-DRHPKIGDGA---LLGACVTILGNISIGAGAMVAA 286 (355)
T ss_pred cccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCcCC-CCCcEECCCC---EEcCCCEEeCCeEECCCCEECC
Confidence 35666666530 1345555555555555544444433211111 1344555555 566666654 566666666666
Q ss_pred CcEEe
Q 009971 481 NVKIV 485 (521)
Q Consensus 481 ~~~i~ 485 (521)
|+++.
T Consensus 287 GSVV~ 291 (355)
T PLN02739 287 GSLVL 291 (355)
T ss_pred CCEEC
Confidence 66664
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-06 Score=71.00 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=47.0
Q ss_pred EECCCcEEce-eEEe---eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCE---EeeeEECC
Q 009971 402 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDK 474 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~ 474 (521)
.|++++.|++ +.|. +++||+++.||++|.|...+ .|++++. +..++|++
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~------------------------~i~~~~~~~~~~~~~Ig~ 59 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGV------------------------TLGGKGKGGGKRHPTIGD 59 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCC------------------------EECCCccCCcCCCCEECC
Confidence 4555555554 4443 56788888888888765433 4445553 56778888
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++.|+.++.+... .+++++++|+++
T Consensus 60 ~~~Ig~~~~i~~~------~~Ig~~~~i~~~ 84 (101)
T cd03354 60 NVVIGAGAKILGN------ITIGDNVKIGAN 84 (101)
T ss_pred CcEEcCCCEEECc------CEECCCCEECCC
Confidence 8888888877653 345555555555
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-06 Score=71.51 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=22.6
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
..||++|.|++ +.|. ...||++|.|++++.|.+
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 35666666665 5554 478888888888887753
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=90.22 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=48.9
Q ss_pred EEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+.+++||++|.|+ ++.|++|+|+.+ +.|+++++|.+|+|+++|.||+++.|.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~-------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPN-------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCC-------------------CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 45689999999998 999999888776 6899999999999999999999999975
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-06 Score=78.86 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
+..++.+..++.+..-......||++|.|+. +.|. .+.||++|.|++++.|.+.
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 4444555555554321223467888888876 6665 5789999999999888763
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-06 Score=83.56 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=50.4
Q ss_pred ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeC---CCCEEeeeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG---KNSHIKRAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig---~~~~i~~~ii~~~ 475 (521)
.+.|++++.||. +.|.+ +.++.||++|+|++.+.+... +++| ..+..++++|+++
T Consensus 160 gvdI~p~A~IG~gv~Idh---~tGVVIGe~a~IGdnv~I~~~------------------VtLGg~g~~~~~r~piIGd~ 218 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDH---ATGVVIGETAVIGNNVSILHH------------------VTLGGTGKACGDRHPKIGDG 218 (294)
T ss_pred eEEeCCcceecCCEEEeC---CCCeEECCCcEECCCCEEeec------------------ceeCCcccccCCCccEECCC
Confidence 567899999986 55444 247899999999876544431 2333 2334456777777
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|.||.+++|.+. .++|++++|++|
T Consensus 219 V~IGagA~Ilgg------i~IGd~a~IGAg 242 (294)
T PLN02694 219 VLIGAGATILGN------VKIGEGAKIGAG 242 (294)
T ss_pred eEECCeeEECCC------CEECCCCEECCC
Confidence 777777777653 445555555555
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=85.97 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=43.9
Q ss_pred ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCE---EeeeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~~ 475 (521)
.+-|++++.|+. +.|.| +.++.||++|+|++.+.+... ++||.... -++.+||++
T Consensus 205 GidI~p~A~IG~Gv~IdH---g~GVVIG~~avIGdnv~I~~g------------------VTIGg~g~~~g~r~p~IGd~ 263 (355)
T PLN02739 205 GIDIHPAARIGKGILLDH---GTGVVIGETAVIGDRVSILHG------------------VTLGGTGKETGDRHPKIGDG 263 (355)
T ss_pred CcccCCCccccCceEEec---CCceEECCCCEECCCCEEcCC------------------ceeCCcCCcCCCCCcEECCC
Confidence 456788888875 43333 357888888877765544321 23332111 023556666
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|.||.|+.|.+ +.+||++++|++|
T Consensus 264 V~IGagA~IlG------~V~IGd~aiIGAG 287 (355)
T PLN02739 264 ALLGACVTILG------NISIGAGAMVAAG 287 (355)
T ss_pred CEEcCCCEEeC------CeEECCCCEECCC
Confidence 66666666654 3555556666666
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.6e-06 Score=68.33 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=16.6
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
.|+.++.+. .+.|++++.|++++.+.+
T Consensus 62 ~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 62 VIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEcCCCEEECcCEECCCCEECCCCEECc
Confidence 566666665 366666666666666654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.1e-06 Score=76.48 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=12.3
Q ss_pred eeEECCCCEECCCCEEcce
Q 009971 416 HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s 434 (521)
+++||++|.|++++.|+.+
T Consensus 87 ~~~IG~~~~I~~~v~ig~~ 105 (162)
T TIGR01172 87 TAVIGDDVTIYHGVTLGGT 105 (162)
T ss_pred CCEECCCCEEcCCCEECCC
Confidence 5666666666666666654
|
Cysteine biosynthesis |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=75.46 Aligned_cols=50 Identities=26% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCcCCCceee-cccc-cceEECCCcEEce-eEE-e---eeEECCCCEECCCCEEcc
Q 009971 384 QPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKI-H---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 384 ~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I-~---~s~ig~~~~Ig~~~~I~~ 433 (521)
++.+.|.+.+- .+.+ ++++|++||++.. +.+ . ..+||+++.|.+.+.|.+
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 35677777664 5555 6799999999997 433 3 369999999999998854
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-06 Score=74.50 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=16.4
Q ss_pred eEECCCcEEce---eEEe-eeEECCCCEECCCCEEc
Q 009971 401 SVIGEGCVIKN---CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 401 ~~Ig~~~~I~~---~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
+.||+++.|++ +.|. ++.||++|.|+++|.|+
T Consensus 48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG 83 (146)
T PRK10191 48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIG 83 (146)
T ss_pred CEECCCeEECCCCeEEECCCcEECCCCEECCCCEEC
Confidence 45677777764 2332 34444444444444444
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-06 Score=86.65 Aligned_cols=63 Identities=33% Similarity=0.468 Sum_probs=52.7
Q ss_pred cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 399 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
.+++||++|.|++ +.|.+|+|.++|.|++++.|.+|++..+ +.||++. . +++ +.
T Consensus 278 ~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~-------------------~~ig~~~-~----i~d-~~ 332 (358)
T COG1208 278 PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN-------------------CKIGASL-I----IGD-VV 332 (358)
T ss_pred CCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC-------------------cEECCce-e----ecc-eE
Confidence 3588999999998 9999999999999999999999999987 5788722 1 666 77
Q ss_pred ECCCcEEeC
Q 009971 478 IGDNVKIVN 486 (521)
Q Consensus 478 Ig~~~~i~~ 486 (521)
+|.++.+..
T Consensus 333 ~g~~~~i~~ 341 (358)
T COG1208 333 IGINSEILP 341 (358)
T ss_pred ecCceEEcC
Confidence 777777765
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.3e-06 Score=77.31 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=13.6
Q ss_pred EECCCcEEce-eEEe-eeEECCCC--EECCCCEEc
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRS--CISEGAIIE 432 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~--~Ig~~~~I~ 432 (521)
.+|.++.|++ +.|. +++|++.+ +||++|.|.
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~ 103 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLA 103 (183)
T ss_pred eecCCcEEcCCcEECCceEEecCceEEECCCCEEC
Confidence 3455555554 4443 34444433 444444444
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=74.60 Aligned_cols=175 Identities=24% Similarity=0.320 Sum_probs=103.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
-|||+|-|.++||.- |.|.+++|+ |||+|+++.+.+++ +++|+|.| .++.+.+.+.+ +. .
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~-~g---------~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE-YG---------A 61 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH-TT---------S
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH-cC---------C
Confidence 389999999999973 999999997 99999999999975 79998888 56667777665 21 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHH-HHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCc-EEEEEEecCc-
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYL-WLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDAD-ITVAALPMDE- 244 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~-~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad-iti~~~~~~~- 244 (521)
.+...... . ..++ +....+. .+..+ ..+.++.+.||. |.. ..+..+++.+.+...+ +.-...+...
T Consensus 62 ~v~~~~~~----~---~~~~-~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 132 (217)
T PF02348_consen 62 KVIFRRGS----L---ADDT-DRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSS 132 (217)
T ss_dssp EEEE--TT----S---SSHH-HHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSH
T ss_pred eeEEcChh----h---cCCc-ccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccch
Confidence 12221111 1 1333 3333333 33332 334788999999 665 4599999999988776 3222222211
Q ss_pred ---ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhcc-CCceeeEEEEEEeHH
Q 009971 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKE-MPYIASMGIYVISKD 307 (521)
Q Consensus 245 ---~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~GIyifs~~ 307 (521)
...... ....+.++....+.+.+.....+... .. ..++...++|.+.+.
T Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 133 VEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRNPE-------------EFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp HHHTSTTST-EEEECTTSBEEEEESSESSECHHHHC-------------SSSSTEEEEEEEEEEEHH
T ss_pred hhcccccce-EEEeccccchhhcccCCCcccccccc-------------cccccccccccccccccc
Confidence 111111 22334455555555544332211100 00 135788999999997
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=78.04 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.9
Q ss_pred ecCCeEEcCC
Q 009971 496 ETDGYFIKSG 505 (521)
Q Consensus 496 ~~~~~~I~~g 505 (521)
+|++|+|++|
T Consensus 244 IGd~~VVGAG 253 (319)
T TIGR03535 244 LGDDCVVEAG 253 (319)
T ss_pred ECCCCEECCC
Confidence 3333333333
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=71.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=13.8
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEe
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIV 485 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~ 485 (521)
.||.++.+. ++.|++++.||+++++.
T Consensus 100 ~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 100 ELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 455555554 45555555555555554
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-05 Score=87.46 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=138.6
Q ss_pred eEEEEeCCeecccc--HHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCC--CCeEEeeeCCChhhhhhccccccc
Q 009971 207 EFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTI 282 (521)
Q Consensus 207 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~--grV~~i~ekp~~~~~~~~~~~~~~ 282 (521)
.+||..||.+..++ +.. -.+++++......+.+-.+..|++..|++ +++..+.+||..+...++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 69999999866544 222 23467666666666556778999999887 6888888999987754332
Q ss_pred ccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC------CCCChhhcchHhhhh---------CCceEEEEEec-ce
Q 009971 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP------GANDFGSEVIPGATS---------IGMRVQAYLYD-GY 346 (521)
Q Consensus 283 ~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~------~~~d~~~dil~~li~---------~~~~I~~~~~~-g~ 346 (521)
.....+.++|+|+|+.+.++.+++.... ...|+.+|++..|-. .+.++....+. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 2334689999999999888766654221 122334555544211 14566667665 57
Q ss_pred EEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce--eEEeeeEECCCCE
Q 009971 347 WEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN--CKIHHSVVGLRSC 424 (521)
Q Consensus 347 w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~--~~I~~s~ig~~~~ 424 (521)
|+-+||-..|+.....+.+.. .....+.....-..|+. .|.|++++.++.+++ +.|.+|.|+.+++
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~--------~~~~~i~~~~~~~~~~~----~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ 362 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV--------TDQRRIMHRKVKPHPAM----FVQNAVLSGKLTAENATLWIENSHVGEGWK 362 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh--------hhhhhhhccccCCCCce----EEEeeEecCCcccCCCeEEEEeeEecCCeE
Confidence 999999999886443332211 11111111111112221 256888999999997 5588999999999
Q ss_pred ECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEE
Q 009971 425 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAII 472 (521)
Q Consensus 425 Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii 472 (521)
||.+|+|.+.-..+-+ ..|-+++.|...=+
T Consensus 363 ig~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 363 LASRSIITGVPENSWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred EcCCcEEecccccccc------------------eecCCCcEEEEEEc
Confidence 9999998776432211 36777777774444
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=71.19 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred EECCCcEEce--eEEe--eeEECCCCEECCCCEEcce
Q 009971 402 VIGEGCVIKN--CKIH--HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 402 ~Ig~~~~I~~--~~I~--~s~ig~~~~Ig~~~~I~~s 434 (521)
.||+++.|+. +.+. .+.||++|.|++++.|...
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCC
Confidence 3555555554 3333 5788999999999888765
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00019 Score=72.59 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=123.6
Q ss_pred EEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHhC--------CC-ceEEEEecCC-hHHHHHHHHHh
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS--------NI-SKIYVLTQFN-SASLNRHLSRA 157 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~~--------gi-~~I~Iv~~~~-~~~i~~~l~~~ 157 (521)
.+|+||||.||||+ ..-||.++|| .|+ ++++..++++... +. -.++|.+.++ .+...++|++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999999 6899999999 354 9999999988542 21 2457777754 47899999874
Q ss_pred hhccCCC----CcCCCcEEEeeccc--C------CCCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCe-ecc
Q 009971 158 YASNMGG----YKNEGFVEVLAAQQ--S------PENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDH-LYR 218 (521)
Q Consensus 158 ~~~~~~~----~~~~~~v~vl~~~q--~------~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~-l~~ 218 (521)
..+++.. .|.++.+..+.... . +..-.| +.|.++-..... +.+.+...+++.+..-|. |..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3333211 12222233332110 0 011112 567766443322 233334567888888888 555
Q ss_pred ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe--CCCC--Ce--EEeeeCCChhhhhhcccccccccCCchhhcc
Q 009971 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEG--RI--IEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (521)
Q Consensus 219 ~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~--d~~g--rV--~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (521)
.-...++-.+..++.++...+.+.. ....-|++.. ..+| .| ++|.|-+..-... ..+..- . ....-.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~--~~~~g~--~-~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRAS--GKDDGD--V-DDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhc--CCCCCC--c-cccccc
Confidence 4455567777778888776655522 2345676653 2234 34 7887765432110 000000 0 000112
Q ss_pred CCceeeEEEEEEeHHHHHHHHhh
Q 009971 293 MPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+.+-.++++++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 34578999999998887777663
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.9e-05 Score=79.24 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=65.2
Q ss_pred ceEEEEeCCeecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC---------CeEEeeeCCChhhhhh
Q 009971 206 LEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFSEKPKGEQLKA 275 (521)
Q Consensus 206 ~~~Lvl~gD~l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g---------rV~~i~ekp~~~~~~~ 275 (521)
.-++|..+|+++. .+ ...+. + .+++++++..+.+.+-.+..|+.++|+++ .+.+|..||..+...+
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 3589999995433 33 11222 1 23678888888777667889999999988 8999999999876531
Q ss_pred cccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 276 MKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
- ...........++|++.|+.+..+.++.
T Consensus 130 ~----------~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 S----------GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred C----------CcccCCCcccccccceeccHHHHHHHHH
Confidence 0 1111223346799999999888776654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00032 Score=73.99 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=123.2
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCC-hHHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFN-SASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~-~~~i~~~l~~~~~~ 160 (521)
..++.+|+||||.||||+ ...||.|+||.....+++..++.+.. .|.. ..+|-++++ .+...++|.+-+..
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 357999999999999998 57899999997666889888887754 3432 456666654 58899999982221
Q ss_pred cCCC-CcCCCcEEEeecccC-C----C-----CCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCeeccccHHH
Q 009971 161 NMGG-YKNEGFVEVLAAQQS-P----E-----NPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDHLYRMDYER 223 (521)
Q Consensus 161 ~~~~-~~~~~~v~vl~~~q~-~----~-----~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~l~~~dl~~ 223 (521)
+... .|.+..+..+..... + . ...| +.|.++-..... +.+.....+++.+.+.|.|...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 1110 112222222211110 0 0 0123 457766443322 23333467899999999976532234
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (521)
++..+.++++++.+-+.+....+ ..-|.+. .+..-+|+++.+-|.......-. .....+.++|-.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~-------------~~~~~~FntnNi 276 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKD-------------IKGFLLFNTNNI 276 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHHHHTS-------------TTTSBEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHHhhhc-------------cccceEEEecee
Confidence 77888888999877776643322 2345544 33333677777766552211000 011346788888
Q ss_pred EEeHHHHHHHHhh
Q 009971 303 VISKDVMLNLLRD 315 (521)
Q Consensus 303 ifs~~vl~~ll~~ 315 (521)
.|+-+.++++++.
T Consensus 277 ~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 277 WFSLDFLKRLLER 289 (420)
T ss_dssp EEEHHHHHHHHHT
T ss_pred eEEHHHHHHHHHh
Confidence 9999999888764
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=66.70 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=8.4
Q ss_pred eEEe-eeEECCCCEECCC
Q 009971 412 CKIH-HSVVGLRSCISEG 428 (521)
Q Consensus 412 ~~I~-~s~ig~~~~Ig~~ 428 (521)
+.|. ++.|+++|.|...
T Consensus 22 v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 22 ITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred eEECCCCEECCCCEEECC
Confidence 3343 4555555555443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=69.47 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=80.6
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh--HHHHHHHHHhhhccCCCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~ 165 (521)
++.+||-|-=.+|||.- |.|+|++|+ |||+++|+++.++. +++++|.|.... +.+..+..+
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~--------- 66 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS--------- 66 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH---------
Confidence 34444444445578863 999999987 99999999999875 789999997443 445555544
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHH-HHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTAD-AVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~-al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 234 (521)
.+ +.++ .|+.+ .+......++....+.++=+.||. +.+.+ +...++.|.++++|
T Consensus 67 --~G-~~vf------------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 67 --HG-FYVF------------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred --cC-eeEe------------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 12 2222 45544 444555556555557888999999 77666 78889999998887
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=72.61 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=6.7
Q ss_pred EECCCCEECCCCEE
Q 009971 418 VVGLRSCISEGAII 431 (521)
Q Consensus 418 ~ig~~~~Ig~~~~I 431 (521)
.||+++.||.|+.|
T Consensus 121 tIg~~V~IGagAkI 134 (194)
T COG1045 121 TIGNGVYIGAGAKI 134 (194)
T ss_pred ccCCCeEECCCCEE
Confidence 44445555554443
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-05 Score=78.85 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=13.9
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.||.+++|.+.+-...+.+|.-+++.+
T Consensus 304 ~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 304 KIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred EECCCCEECcccCCCcEEECCCeEEEc
Confidence 555555555544444444555555544
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00058 Score=72.98 Aligned_cols=209 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC--CCcchhHHHHHHhHhC--------------CC-ceEEEEecCC-hHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQFN-SAS 149 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~--G~~pLI~~~l~~l~~~--------------gi-~~I~Iv~~~~-~~~ 149 (521)
.++.+|+||||.||||+ ...||.|++|+ .++++++...+++... +. =..+|-+.+. .+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 57889999999999999 67899999873 2248999998886321 11 1346677644 578
Q ss_pred HHHHHHHhhhccCCCCcCCCcEEEeeccc-------------CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEE
Q 009971 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQ-------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLV 210 (521)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~v~vl~~~q-------------~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lv 210 (521)
..+||.+...|++.. ..|.++.... ++..-.| +.|.++-.... ++.+.....+++.+
T Consensus 192 T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 999998743333211 1122221111 1111112 56776644422 22333346789999
Q ss_pred EeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe-CCCC--CeEEeeeCCChhhhhhcccccccccCC
Q 009971 211 LAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEG--RIIEFSEKPKGEQLKAMKVDTTILGLD 286 (521)
Q Consensus 211 l~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~-d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~ 286 (521)
.+.|. +...--..++-.+..++.++.+-+.+.... ...-|.+.. +.+| .|++|.|-+...... . +
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~-~---------~ 336 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASA-I---------N 336 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhc-c---------C
Confidence 99999 454333457778888889877765543211 234466654 2344 488887765432210 0 0
Q ss_pred chhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 287 DERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+..........+++.++|+-++|+++..
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0001122357788999999999987643
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.6e-05 Score=76.13 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=41.9
Q ss_pred cccCCCcccCCCCcCCCceee-------cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLM 437 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~ 437 (521)
|++|++.+.+.++++|.+.|+ +.++.+|+|-++|+|.+ +++-||+||.+++||.+++++..-+.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~ 361 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVE 361 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccc
Confidence 556665555555555544443 44556677777787776 77777888888888888777755443
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.4e-05 Score=70.16 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=8.3
Q ss_pred EEECCCCEECCCccC
Q 009971 507 VTIIKDALIPSGTII 521 (521)
Q Consensus 507 v~I~~~~~i~~gsvi 521 (521)
|+||+|++|++||+|
T Consensus 219 V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 VTIGEGAVIAAGSVV 233 (269)
T ss_pred eeECCCcEEeccceE
Confidence 455555555555553
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.4e-05 Score=67.21 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=41.5
Q ss_pred cceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 399 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 399 ~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
+.++|-+||.|.. .+.+..+|..|.++.++.|....-.-+ ..-+-.+.+||+- +.|+++|++.-+.|+..+.+
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdh---VFieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDH---VFIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhc---CCceeeeeeecce---EEEecceEeehhhheeeeEe
Confidence 3467777888775 223566777777777777765421000 0000011222221 24555555555556666666
Q ss_pred CCCcEEeC
Q 009971 479 GDNVKIVN 486 (521)
Q Consensus 479 g~~~~i~~ 486 (521)
|+|++|++
T Consensus 111 GknaviGr 118 (184)
T KOG3121|consen 111 GKNAVIGR 118 (184)
T ss_pred ccceeEcC
Confidence 66666655
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0017 Score=67.98 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=109.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCChHHHHHHHHHhhhcc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFNSASLNRHLSRAYASN 161 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~~~~i~~~l~~~~~~~ 161 (521)
-.++.+|+||||.||||+ ..-||.+++|..++++++.+++.++. .+++ ..+|-+..+.++-..++.....++
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 357899999999999999 57899999998334999999888754 3443 456666677766666655422222
Q ss_pred CC----CCcCCCcEE-EeecccCC----CC--CCC-CCChHH---HHHH--HHHHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 162 MG----GYKNEGFVE-VLAAQQSP----EN--PNW-FQGTAD---AVRQ--YLWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 162 ~~----~~~~~~~v~-vl~~~q~~----~~--~~~-~~Gt~~---al~~--~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
+. ..|.+.... ++.....+ .+ ..| +.|.++ +|.. .++.+.....+.+.|.+.|.|.- .|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 10 011221111 22211111 11 234 456654 3332 12222234678899999999554 5644
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCCh
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKG 270 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~ 270 (521)
++..+..++.+.++=+...... ..+-|++. .|..-||+++.+-|..
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred HHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChh
Confidence 6777888888877655542221 23456655 7777899999987775
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.8e-05 Score=70.14 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=23.9
Q ss_pred cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 399 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
.+..+|..|.++. |.+. +..||.++.++++|.|...
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 3567788888876 4432 4567777777777777654
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00043 Score=64.54 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred CCccceecCC--CcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCC
Q 009971 110 RAKPAVPLGA--NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 187 (521)
Q Consensus 110 ~PK~LlpI~G--~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~ 187 (521)
.+|+|+++.| + |||+|+++.+.. .+++|+|+++.+. .+ .. .+ +.++.... . ..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~~-~~~~iivv~~~~~-~~----~~-----------~~-~~~i~d~~--~----g~ 57 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVGQ-RCAPVFVMAAPGQ-PL----PE-----------LP-APVLRDEL--R----GL 57 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHhh-cCCEEEEECCCCc-cc----cc-----------CC-CCEeccCC--C----CC
Confidence 5899999997 7 999999998775 5899999997542 11 00 00 22332211 1 26
Q ss_pred ChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhc
Q 009971 188 GTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRET 231 (521)
Q Consensus 188 Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 231 (521)
|...++..++........+.+++++||+ +.+.+ +.++++.+...
T Consensus 58 gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 58 GPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 7777777666443222357999999999 66655 77777765433
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=79.96 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=46.3
Q ss_pred eEECCCcEEceeEEeeeEEC-CCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKNCKIHHSVVG-LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig-~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.||++|.|+. ..++. +.+.||++|.|.+.+.+...-+|. . .-.+++++||++|.||
T Consensus 598 a~IG~~v~i~~----~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~-----------~-------~~~~~~v~IG~~~~IG 655 (695)
T TIGR02353 598 VKIGRGVYIDG----TDLTERDLVTIGDDSTLNEGSVIQTHLFED-----------R-------VMKSDTVTIGDGATLG 655 (695)
T ss_pred CEECCCeEECC----eeccCCCCeEECCCCEECCCCEEEeccccc-----------c-------ccccCCeEECCCCEEC
Confidence 44555555553 22332 336888888887655443211111 0 0012345555555555
Q ss_pred CCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 480 ~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.++++.. +.++|+++.|+++ .++.++..+++|++
T Consensus 656 ~~a~V~~------g~~IGd~a~Ig~~-SvV~~g~~vp~~s~ 689 (695)
T TIGR02353 656 PGAIVLY------GVVMGEGSVLGPD-SLVMKGEEVPAHTR 689 (695)
T ss_pred CCCEECC------CCEECCCCEECCC-CEEcCCcccCCCCE
Confidence 5555543 3455556666666 55555555666553
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00039 Score=78.38 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=53.7
Q ss_pred ceEECCCcEEceeEE---eeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCC
Q 009971 400 DSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I---~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 475 (521)
.+.||+||+|+...+ ....||++|.|+++|.|.+..+.+.. +--| |+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-----------l~~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-----------LHTG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-----------eeec--CcEECCCcEECCCCEEcCC
Confidence 456788888876322 24678888888888887654332210 0001 25666666665 6666666
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKS 504 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~ 504 (521)
++||++++|.....+.++..+.++.....
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G 207 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHG 207 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEe
Confidence 66666666666555555444444444433
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.024 Score=62.55 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=125.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHhC-----------CC-ceEEEEecCC-hHHH
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS-----------NI-SKIYVLTQFN-SASL 150 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~~-----------gi-~~I~Iv~~~~-~~~i 150 (521)
..++.+|+||||.||||+ ..-||.++|+ .|+ ++++..++.+... +. --++|-+.++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 358999999999999999 5789999998 244 9999999987542 11 2457777755 4788
Q ss_pred HHHHHHhhhccCCC----CcCCCcEEEeecc-c-----C--CCCCC-CCCChHHHHHHHH-----HHhhhcCcceEEEEe
Q 009971 151 NRHLSRAYASNMGG----YKNEGFVEVLAAQ-Q-----S--PENPN-WFQGTADAVRQYL-----WLFEEHNVLEFLVLA 212 (521)
Q Consensus 151 ~~~l~~~~~~~~~~----~~~~~~v~vl~~~-q-----~--~~~~~-~~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~ 212 (521)
.++|.+...|++.. .|.+..+..+... . . +.... .+.|.++-..... +.+.....+++.+.+
T Consensus 202 ~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 202 LKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 99998843333211 1122222222111 0 0 01111 2557765433322 233334678999999
Q ss_pred CCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe--CCCCC----eEEeeeCCChhhhhhcccccccccC
Q 009971 213 GDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR----IIEFSEKPKGEQLKAMKVDTTILGL 285 (521)
Q Consensus 213 gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~--d~~gr----V~~i~ekp~~~~~~~~~~~~~~~~~ 285 (521)
.|. |...-...++-.+..++.++.+-+.+... ...-|+++. ..+|+ +++|.|.+..-. ....+..-+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~--~a~~p~g~l~~ 357 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLR--ATGHPDGDVND 357 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHH--hccCCCccccc
Confidence 999 44433477888888899998777665432 334555553 23344 446666543311 11111111110
Q ss_pred CchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 286 DDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 286 ~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
... .+.+-.++...+++-+.+.+++++
T Consensus 358 ~~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 112224788889998777777764
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=71.98 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=47.5
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
+.|-.+..+.. +.++ +|.||+++.||++|+|++.+.+.+ +.+-.+. .++.++.|..++++.++.|
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~~---~~~~~s~i~s~ivg~~~~I 325 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQD----------STILGAD---YYETHSEISSSIVGWNVPI 325 (371)
T ss_pred ccccccEeeccccccCCccEECCCceECCCcEecCceEEEe----------eEEEccc---eechhHHHHhhhccccccc
Confidence 33333344444 5555 677777777777777777766643 2333333 4666677777788888888
Q ss_pred CCCcEEeCCCccC
Q 009971 479 GDNVKIVNSDSVQ 491 (521)
Q Consensus 479 g~~~~i~~~~~~~ 491 (521)
|.+++|-+.+.++
T Consensus 326 G~~~~id~~a~lG 338 (371)
T KOG1322|consen 326 GIWARIDKNAVLG 338 (371)
T ss_pred cCceEEecccEec
Confidence 8887776643333
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=61.42 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=3.5
Q ss_pred CEECCCCEE
Q 009971 423 SCISEGAII 431 (521)
Q Consensus 423 ~~Ig~~~~I 431 (521)
.+||+++.+
T Consensus 88 i~ig~~~~i 96 (190)
T COG0110 88 ITIGDNVVV 96 (190)
T ss_pred eEECCCceE
Confidence 333333333
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0031 Score=56.84 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=7.2
Q ss_pred eeEECCCCEECCC
Q 009971 416 HSVVGLRSCISEG 428 (521)
Q Consensus 416 ~s~ig~~~~Ig~~ 428 (521)
++.|+.++.|..+
T Consensus 27 ~~~I~~~v~i~~~ 39 (145)
T cd03349 27 FCSIAPGVKIGLG 39 (145)
T ss_pred CCEECCCCEECCC
Confidence 4555555555554
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=58.68 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=18.3
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 431 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I 431 (521)
+.|.+++++-. +.|+ +.+|+++|.|.+.+++
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~ 41 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF 41 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEE
Confidence 45677777664 5555 4566666655555544
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00099 Score=62.76 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=21.1
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
.||+|-.+.++ ...+||+-+.||+++.|...+-++.
T Consensus 156 ~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 156 KIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 36777666652 2456666666666666655555554
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.14 Score=52.86 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=167.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCceEEEE-ecCCh-HHHHHHHHHhhhcc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNISKIYVL-TQFNS-ASLNRHLSRAYASN 161 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~~I~Iv-~~~~~-~~i~~~l~~~~~~~ 161 (521)
.++..+=|-||.||-|+ ..-||.++++-.....+|-++..... .+++--.|+ ..++. ++...++.+.+..+
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 35777889999999998 67899999996555877765554432 445433333 44554 56666676643322
Q ss_pred CC--CCcCCCcEEE-----eeccc---CCCCCCC-CCChHHHHHHHH------HHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 162 MG--GYKNEGFVEV-----LAAQQ---SPENPNW-FQGTADAVRQYL------WLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 162 ~~--~~~~~~~v~v-----l~~~q---~~~~~~~-~~Gt~~al~~~~------~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
+. .+-...|-++ ++... ....+.| +.|.++-..... .++. ...+.+++.+.|.+.. .|+.
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~lla-qGkEylFVSNiDNLGAtvDL~- 256 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLA-QGKEYLFVSNIDNLGATVDLN- 256 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHh-CCceEEEEeccccccceeeHH-
Confidence 11 1101111111 11111 1122457 446655333221 2232 2568999999999764 5654
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGI 301 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI 301 (521)
+++.....+....|=+++....+. .-|.+ ++-+| |++++..-|.....+-..++ .-.+.++.-
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aDv-KgGtL-i~y~G~lrlLEiaQVP~ehv~eFkS~k-------------kFkifNTNN 321 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRADV-KGGTL-IQYEGKLRLLEIAQVPKEHVDEFKSIK-------------KFKIFNTNN 321 (498)
T ss_pred HHHHHhcCCCceEEEecccchhhc-ccceE-EeecCEEEEEEeccCChhHhhhhccce-------------eEEEeccCC
Confidence 344444556665555544322111 12322 22345 56666665554322100000 012445555
Q ss_pred EEEeHHHHHHHHhhhCCCC--------CChhhcchHh------hhhCCceEEEEEe-cceEEecCCHHHHHHHhhhcccC
Q 009971 302 YVISKDVMLNLLRDKFPGA--------NDFGSEVIPG------ATSIGMRVQAYLY-DGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 302 yifs~~vl~~ll~~~~~~~--------~d~~~dil~~------li~~~~~I~~~~~-~g~w~dIgt~edy~~An~~ll~~ 366 (521)
-.++-+.+++++++..-.. -+.+.++|+. +++.=..-.+..+ ...|..+.|-.|++.....+-.-
T Consensus 322 lWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~l 401 (498)
T KOG2638|consen 322 LWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDL 401 (498)
T ss_pred eEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeec
Confidence 5566667777776532110 1112233332 1221011122222 34577777777765544433221
Q ss_pred CCCCccccccCCCcccCCCCcC--CCce-ee--cccccce--EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 367 PIPDFRYFYDRSAPIYTQPRYL--PPSK-ML--DADVTDS--VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~--~~~~-i~--~~~i~~~--~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
....+. .++ .|.. +|.. ++ ..++... .+-.--.| ..+.+-.|.-++..|.++.+.+.+++-+
T Consensus 402 d~Gsl~--l~~-------~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia 470 (498)
T KOG2638|consen 402 DNGSLT--LSP-------SRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIA 470 (498)
T ss_pred cCCeEE--ech-------hhcCCCCCeeecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEe
Confidence 111110 111 1111 1111 11 1112211 11111111 1223555566677788888877766543
Q ss_pred ccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECC
Q 009971 440 DYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480 (521)
Q Consensus 440 ~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 480 (521)
+ ..-++.|-+|+++++++|-.|++|-+
T Consensus 471 ~--------------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 N--------------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred c--------------CCCeeecCCCCeeecceEeccccccc
Confidence 1 12236788999999998888887754
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0014 Score=57.32 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=10.1
Q ss_pred cceEECCCcEEce-eEEe
Q 009971 399 TDSVIGEGCVIKN-CKIH 415 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~ 415 (521)
.++.||..|+++. |.|+
T Consensus 53 AnVr~GryCV~ksrsvIR 70 (184)
T KOG3121|consen 53 ANVRIGRYCVLKSRSVIR 70 (184)
T ss_pred ccceEcceEEeccccccC
Confidence 4566666666665 5554
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=59.29 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=36.3
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCce
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAA 494 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~ 494 (521)
-.++|+.+.+|+++.|.+.++..+ +.|+.+|.+. |.++..++.||+.+.|...-.+..+-
T Consensus 33 ~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdL 93 (277)
T COG4801 33 YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDL 93 (277)
T ss_pred eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccc
Confidence 445666666666666666555543 4566666664 55555566666665555443333333
Q ss_pred eecCCeEE
Q 009971 495 RETDGYFI 502 (521)
Q Consensus 495 ~~~~~~~I 502 (521)
.+|+.+.|
T Consensus 94 dig~dV~I 101 (277)
T COG4801 94 DIGADVII 101 (277)
T ss_pred ccccceEE
Confidence 33333333
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0011 Score=44.48 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=21.6
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
++.||++|+|+. +.|. ++.||++|.|++++.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 356777777776 5555 67777777777776664
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0051 Score=58.31 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=44.7
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 478 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 478 (521)
.++++...+++ +.|.+.+++.+++|+.+|.+.+.++..++ .-||+.++|. +.++..+--|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEeccccc
Confidence 34555555554 55556666677777777777777766654 3577777776 5666667777
Q ss_pred CCCcEEeC
Q 009971 479 GDNVKIVN 486 (521)
Q Consensus 479 g~~~~i~~ 486 (521)
|+++.|.+
T Consensus 96 g~dV~Ieg 103 (277)
T COG4801 96 GADVIIEG 103 (277)
T ss_pred ccceEEec
Confidence 77777764
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.002 Score=43.13 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=5.4
Q ss_pred EECCCCEECCCcEE
Q 009971 471 IIDKNARIGDNVKI 484 (521)
Q Consensus 471 ii~~~~~Ig~~~~i 484 (521)
+|++++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 3 VIGDNVIIGPNAVI 16 (36)
T ss_dssp EEETTEEEETTEEE
T ss_pred EEcCCCEECCCcEe
Confidence 33333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0042 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=15.2
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAII 431 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I 431 (521)
..||++|+|+. |.| ...||++|.|++|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 45777888876 554 3555555555555554
|
... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.016 Score=38.49 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=4.4
Q ss_pred ECCCCEECCCcEE
Q 009971 472 IDKNARIGDNVKI 484 (521)
Q Consensus 472 i~~~~~Ig~~~~i 484 (521)
||+||.||.++.+
T Consensus 4 IG~~~~ig~~~~i 16 (34)
T PF14602_consen 4 IGDNCFIGANSTI 16 (34)
T ss_dssp E-TTEEE-TT-EE
T ss_pred ECCCEEECccccc
Confidence 4444444444443
|
... |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.076 Score=50.00 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=59.3
Q ss_pred cchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh
Q 009971 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (521)
Q Consensus 121 ~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l 200 (521)
+|||+|+++.+...++++++++++. +.+.+++.. + + ++++... . .|...+++.++..+
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----------~-v~~i~~~------~--~G~~~si~~al~~~ 87 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----------G-APVLRDP------G--PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----------C-CEEEecC------C--CCHHHHHHHHHHHh
Confidence 4999999999999888888888863 344444332 1 1 2333211 1 38899999998766
Q ss_pred hhcCcceEEEEeCCe-ecc-ccHHHHHHHHH
Q 009971 201 EEHNVLEFLVLAGDH-LYR-MDYERFIQAHR 229 (521)
Q Consensus 201 ~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~ 229 (521)
.. ..+.++++.||+ +.. .++.++++.+.
T Consensus 88 ~~-~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE-PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc-cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 43 235899999999 554 56888888653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.34 Score=41.79 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=66.5
Q ss_pred ceecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH
Q 009971 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (521)
Q Consensus 114 LlpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~ 191 (521)
++|..+..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ......+.. . . ..|.+.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~---~----~~g~~~ 67 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRVIN-E---E----NQGLAA 67 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEEEe-c---C----CCChHH
Confidence 3566666689999999999987 7889999887777777776663221 011111111 1 1 268888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
++..++...+ .+.++++.+|..+..+ +..++..+.
T Consensus 68 ~~~~~~~~~~---~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 68 ARNAGLKAAR---GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHhc---CCEEEEECCCCccCccHHHHHHHHHh
Confidence 8888877664 4789999999988776 555534443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.5 Score=41.00 Aligned_cols=105 Identities=23% Similarity=0.196 Sum_probs=63.0
Q ss_pred EEEEEEeC---CCCCCCCcccc-CCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 90 VLGIILGG---GAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 90 ~~aVILAa---G~GtRl~PlT~-~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|.+||+-. +.-|||.|.-. +.-+-+ . +-||-.++..+... +.+|.|++.. +.+..+-.+
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~---~--laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~~--------- 63 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENF---A--LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPATK--------- 63 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHH---H--HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhccc---------
Confidence 45677644 56788887522 111221 1 35888999999876 7899999853 222222111
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-e-ccccHHHHHHHH
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAH 228 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h 228 (521)
.+++.. + +--.++.++++.+.. .+.++|+++|. + ...+++.+++..
T Consensus 64 -----~~vl~d------~----dLN~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 64 -----LEVLAD------P----DLNTAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred -----ceeeec------c----chHHHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhc
Confidence 134332 1 122467777766653 25699999999 4 456688887754
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=90.61 E-value=4.4 Score=35.57 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred eecCCCcchhHHHHHHhHhC--CCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-+....|..+|+.+.+. ...+|+|+-+...+...+.+.+.... ...++++...+ ..|.+.+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~-------~~~i~~i~~~~-------n~g~~~~ 69 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAES-------DPNIRYIRNPE-------NLGFSAA 69 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCC-------STTEEEEEHCC-------CSHHHHH
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccc-------ccccccccccc-------ccccccc
Confidence 45543335788888888775 45677777654444555555553210 12255554332 1577888
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEE
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAAL 240 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~ 240 (521)
+..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+...
T Consensus 70 ~n~~~~~a~---~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 70 RNRGIKHAK---GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccc---eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 888877665 4699999999988777 88999998887776555443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.69 Score=49.14 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=53.0
Q ss_pred CceEEEEEec-ceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce-e
Q 009971 335 GMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-C 412 (521)
Q Consensus 335 ~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~ 412 (521)
+.++.+..+. +.++=+||-.+|++--..-..-.+.... +.. .+........+ ++.|-||++..++.+++ +
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~-~~~--~~~~~~~~~~~-----~~~VinSil~~~~~vg~~s 297 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRK-FSH--SPATTPSDSEA-----SSCVINSILEGGVSVGPGS 297 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHhhccCcccccceee-eec--cccccccccCC-----CeeEEEeEecCCceECCCC
Confidence 5677777665 6789999998876543322000000000 000 00000111122 22345677777777776 7
Q ss_pred EEeeeEECCCCEECCCCEEcceEEEC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
+|.+|.|+.++.||++|.|.+.-+..
T Consensus 298 vIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 298 VIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred EEEeeecCCCCEECCCCEEECCcccc
Confidence 77788888888888888777665544
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.6 Score=40.87 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
.|-+.++..++.... .+.++++.+|...+.+ +.++++...+.+.+++..
T Consensus 79 ~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 677888887776543 4789999999977755 888888776667776443
|
|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=86.01 E-value=12 Score=35.11 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=59.6
Q ss_pred eecCCCcchhHHHHHHhHhCC---CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~ 191 (521)
+|.-.....|...++.+.+.- --+|+||-+...+...+.+.+ +.- ....+.++.... ..|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~-~~~------~~~~i~~~~~~~-------n~G~~~ 68 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE-LAK------EYPRVRLIVRPG-------KRGLGS 68 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH-HHH------hCCceEEEecCC-------CCChHH
Confidence 444333245677777776532 346766654333333333332 110 011233432211 268888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
++..++.... .+.++++.+|.....+ +..+++.....+.++...
T Consensus 69 a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 69 AYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8888876554 4788899999977655 888888765566665433
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=84.23 E-value=14 Score=35.06 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred eecCCCc-chhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHH
Q 009971 115 VPLGANY-RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV 193 (521)
Q Consensus 115 lpI~G~~-pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al 193 (521)
+|.-+.. ..|...|+.+.+....+|+||.....+...+.+..... ...+.++... + .|-+.++
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--------~~~~~v~~~~----~----~g~~~a~ 69 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--------YGGIFVITVP----H----PGKRRAL 69 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--------CCcEEEEecC----C----CChHHHH
Confidence 4444444 67888888887755567888877666665666533211 1113343221 1 5677777
Q ss_pred HHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 194 RQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 194 ~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
..++...+ .+.++++.+|..+..+ +.++++.+.
T Consensus 70 n~g~~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 70 AEGIRHVT---TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHhC---CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77765543 5889999999988877 777777665
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=83.29 E-value=5.9 Score=37.19 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (521)
.|-+.++..++.... .+.++++.+|..+..+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 688889888876654 4789999999977755 8888887556666655443
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=82.07 E-value=26 Score=30.67 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=62.6
Q ss_pred eecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-+...++..+++.+.+.. ..+|+|+-....+...+.+.+.+. .+.++... . ..|.+.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~---~----~~g~~~a 65 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNG---E----NLGFGAG 65 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecC---C----CcChHHH
Confidence 455555568888899987753 457777766555555555554211 13333211 1 2688888
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcC
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (521)
+..++.... .+.++++..|..+..+ +..+++.+.+..
T Consensus 66 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 66 NNQGIREAK---GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred hhHHHhhCC---CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 888876663 5789999999977766 777777655443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=81.68 E-value=22 Score=33.72 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=61.7
Q ss_pred eecCCCcchhHHHHHHhHhCCC----ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChH
Q 009971 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~ 190 (521)
+|.-++.+.|...++.+.+... -+|+|+-+...+...+.+..-.. ....+.++... + .|-+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-------~~~~v~~i~~~----~----~~~~ 70 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-------KDPRIRLIDNP----K----RIQS 70 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-------cCCeEEEEeCC----C----CCch
Confidence 4444444577888888876543 36777766555555555544110 01124444211 1 3555
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEE
Q 009971 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (521)
.++..++...+ .+.++++.+|.+...+ +.++++.+.+.+.++..
T Consensus 71 ~a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 71 AGLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred HHHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 67777765543 4789999999977666 88888766655555433
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=80.54 E-value=23 Score=32.00 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=59.3
Q ss_pred chhHHHHHHhHhC----CCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHH
Q 009971 122 RLIDIPVSNCLNS----NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (521)
Q Consensus 122 pLI~~~l~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~ 197 (521)
..|..+|+.+.+. ...+|+|+-+...+...+.+.. +... ...+.++.... ..|.+.++..++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~-~~~~------~~~~~~~~~~~-------n~G~~~a~n~g~ 75 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE-LAAR------VPRVRVIRLSR-------NFGKGAAVRAGF 75 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH-HHHh------CCCeEEEEccC-------CCCccHHHHHHH
Confidence 3566667777664 3567777765444444444433 1110 01123332221 267788888877
Q ss_pred HHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEE
Q 009971 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (521)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (521)
.... .+.++++.+|.....+ +..++....+.+.++.+..
T Consensus 76 ~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 76 KAAR---GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 6554 3789999999977666 8888887566666654443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 521 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 0.0 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 3e-48 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 3e-06 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 1e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 4e-05 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 5e-05 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 7e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 7e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 7e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 7e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 8e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 9e-05 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 9e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 1e-04 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 1e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 521 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 1e-20 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 4e-19 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 9e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 6e-10 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 9e-07 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 5e-06 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 9e-06 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 1e-05 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 1e-05 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 1e-05 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 4e-05 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 3e-04 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 7e-05 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 1e-04 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 1e-04 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 1e-04 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 1e-04 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 1e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 730 bits (1886), Expect = 0.0
Identities = 426/451 (94%), Positives = 444/451 (98%), Gaps = 1/451 (0%)
Query: 71 AVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN 130
AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN
Sbjct: 2 AVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN 61
Query: 131 CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190
CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTA
Sbjct: 62 CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTA 121
Query: 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAF 250
DAVRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAF
Sbjct: 122 DAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAF 181
Query: 251 GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310
GLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASMGIYVISKDVML
Sbjct: 182 GLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVML 241
Query: 311 NLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPD 370
NLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP+PD
Sbjct: 242 NLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPD 301
Query: 371 FRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAI 430
F FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAI
Sbjct: 302 FS-FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAI 360
Query: 431 IEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 490
IED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+V
Sbjct: 361 IEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNV 420
Query: 491 QEAARETDGYFIKSGIVTIIKDALIPSGTII 521
QEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 421 QEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 544 bits (1403), Expect = 0.0
Identities = 131/449 (29%), Positives = 215/449 (47%), Gaps = 62/449 (13%)
Query: 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146
+R + +L GG G+RL LT +RAKPAV G R+ID +SN LNS I +I V TQ+
Sbjct: 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 147 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL 206
+ SL RHL R + + + ++L A Q W++GTADAV Q + + E +
Sbjct: 70 AHSLIRHLQRGW--DFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPE 127
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
++LAGDH+Y+MDYE +Q H ++ AD+T+ L + AT FG+M ++E+ II+F E
Sbjct: 128 YMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIE 187
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323
KP E +ASMGIYV ++ +R + DF
Sbjct: 188 KPADP--------------PGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDF 233
Query: 324 GSEVIPGATSIGMRVQAYL-----------YDGYWEDIGTIEAFYNANLGITKKPIPDFR 372
G ++IP G + A+ ++ YW D+GTI+A++ AN+ +T +PD
Sbjct: 234 GKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT-DVVPDLD 291
Query: 373 YFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCIS 426
YD+S PI+T PP+K + D SV+ C+I ++ S++ +
Sbjct: 292 -IYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRAN 350
Query: 427 EGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486
+ +E+ +++ + + IG+++ + +ID I + + +
Sbjct: 351 SYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEGLIV-G 390
Query: 487 SDSVQEAARETDGYFIKSGIVTIIKDALI 515
D +A R +SGI I + +
Sbjct: 391 EDPELDAKR---FRRTESGICLITQSMID 416
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 1e-20
Identities = 79/469 (16%), Positives = 137/469 (29%), Gaps = 121/469 (25%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IL G+G RL P+T R K VP+ + LI+ + I I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPI-LSKPLIEYQIEYLRKCGIRDITVIVS------- 54
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
++ Y V Q+ +GT A+ F + E L++
Sbjct: 55 -SKNKEYFEKKLK--EISIVT----QKDD-----IKGTGAAILSA--KFND----EALII 96
Query: 212 AGDHLY--RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
GD + + I I + +G++ +D + + + EKP+
Sbjct: 97 YGDLFFSNEKEICNIITLKENA---IIGVKVS----NPKDYGVLVLDNQNNLSKIIEKPE 149
Query: 270 G--EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA-NDFGSE 326
L + GIY ++ D+ L +
Sbjct: 150 IPPSNL-----------------------INAGIYKLNSDI-FTYLDKISISERGELELT 185
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR 386
+ RV+ Y+GYW DIG + N + +
Sbjct: 186 DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN------------KWALDNLVFSQNLG 233
Query: 387 YLPPSKMLDADVT---DSVIGEGCVIKNCKI--HHSVVGLRSCISEGAIIEDTLLMGADY 441
+ + + V D+ I G I+ S +G S + I+ + +GA
Sbjct: 234 NVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGA-- 291
Query: 442 YETDADRRFLAAKGSVPIGIGKNSHIKR------AIIDKNARIGDNVKIVN-------SD 488
+ K SV I + S I ++I ++ G I N
Sbjct: 292 --------SVEVKESV---IMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVK 340
Query: 489 SVQEAARETDGY-----------FIKSGI-----VTIIKDALIPSGTII 521
+ R + G + V I A I G ++
Sbjct: 341 VNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV 389
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-19
Identities = 37/281 (13%), Positives = 75/281 (26%), Gaps = 86/281 (30%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS----NCLNSNISKIYVLTQFNSA 148
+IL G GTRL + K P V +G + L+ ++S+ ++
Sbjct: 22 VILAAGLGTRLGGVPK----PLVRVG------GCEIILRTMKLLSPHVSEFIIVA----- 66
Query: 149 SLNRHLSRAYASNMGGYKNE--------GFVEV-LAAQQSPENPNWFQGTADAVRQYLWL 199
+ + PE G ++
Sbjct: 67 ---------------SRYADDIDAFLKDKGFNYKIVRHDRPEK-----GNGYSLLVAKNH 106
Query: 200 FEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG 259
E+ F++ GDH+Y FI+ + I + +++++ G
Sbjct: 107 VED----RFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDIGE--ATKIRVED-G 156
Query: 260 RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319
R+ + + + G +V+ + +
Sbjct: 157 RVAKIGKDLREFDC-----------------------VDTGFFVLDDSIF-----EHAEK 188
Query: 320 ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
D + + Y+ W D+ T E AN
Sbjct: 189 LRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 9e-17
Identities = 34/277 (12%), Positives = 81/277 (29%), Gaps = 67/277 (24%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
IIL G GTRL PLT+ K V + LI+ + I+ I ++
Sbjct: 29 IILAAGLGTRLRPLTENTPKALVQVN-QKPLIEYQIEFLKEKGINDIIIIVG-------- 79
Query: 153 HLSRAYASNMGGYKNEGF-VEVLAAQQSPENPNWFQ-GTADAVRQYLWLFEEHNVLEFLV 210
Y Y E + V ++ N + + L+L +E +++
Sbjct: 80 -----YLKEQFDYLKEKYGVRLV------FNDKYADYNNFYS----LYLVKEELANSYVI 124
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
A ++L++ + + T ++ ++ T + ++ ++ + K
Sbjct: 125 DADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYKVQDIIVDSK- 174
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV------MLNLLRDKFPGANDFG 324
G+ ++ + +
Sbjct: 175 -----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYW 211
Query: 325 SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNAN 360
++ + V +G +I +++ +
Sbjct: 212 DNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 52/393 (13%), Positives = 101/393 (25%), Gaps = 127/393 (32%)
Query: 192 AVRQYLWLFEEHN---VLEFL--VLAGDH--LY----------RMDYERFIQAHRETDAD 234
+ W V +F+ VL ++ L M +I+ D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 235 ITVAALPMDEKRATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAM----KVDTTILGL 285
V A + R + L+++ ++ + + K T + L
Sbjct: 123 NQVFA-KYNVSRLQPYLKLRQALLELRPAKNVL----------IDGVLGSGK---TWVAL 168
Query: 286 ----DDERAKEMP---YIASMGIYVISKDVMLNL------LRDKFPGANDFGSEVIPGAT 332
+ +M + ++ + V+ L + + +D S +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 333 SIGMRVQAYL----Y-------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPI 381
SI ++ L Y + AF +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAF-------------NLS--------- 265
Query: 382 YTQPRYLPPSKML----DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 437
K+L VTD + + + H + L ++ +
Sbjct: 266 ---------CKILLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTP--------DEVKSL 306
Query: 438 GADYYETDADR-RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA--- 493
Y + + P + S I +I D A DN K VN D +
Sbjct: 307 LLKYLDCRPQDLPREVLTTN-PRRL---SIIAESIRDGLATW-DNWKHVNCDKLTTIIES 361
Query: 494 ------ARETDGYFIKSGIVTIIKDALIPSGTI 520
E F + + A IP+ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 79/547 (14%), Positives = 144/547 (26%), Gaps = 202/547 (36%)
Query: 66 VVSPQAVSDSKNSQTCLDPEASRSVLGIIL-G-GGAG-TRLYPLTKKRAKPAVPLGANYR 122
V Q + + L P +++ G G+G T + A+ + +Y+
Sbjct: 131 VSRLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWV----------ALDVCLSYK 175
Query: 123 LID--------IPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVL 174
+ + + NC + VL L + + S N
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET----VLEMLQK--LLYQIDPNWTSRSDHSSNI------ 223
Query: 175 AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA------- 227
+ Q +R+ L N L LVL ++ + A
Sbjct: 224 -----KLRIHSIQ---AELRRLLKSKPYENCL--LVL--LNVQ---NAKAWNAFNLSCKI 268
Query: 228 ---HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILG 284
R +T I + + + + + L +D
Sbjct: 269 LLTTR--FKQVTDFLSAATTTH--------ISLDHHSMTLTP-DEVKSLLLKYLDCRPQD 317
Query: 285 LDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD 344
L E P S+ I++ +RD D + +
Sbjct: 318 LPREVLTTNPRRLSI----IAE-----SIRD-GLATWDN-----------------WKHV 350
Query: 345 GYWEDIGTIEAFYNANLGITKKPIPDFRYFYDR------SAPIYTQPRYLPPSKML---- 394
+ IE+ N L +P ++R +DR SA I P+ +L
Sbjct: 351 NCDKLTTIIESSLN-VL----EP-AEYRKMFDRLSVFPPSAHI--------PTILLSLIW 396
Query: 395 -------DADVTDSVIGEGCVIKNCK-----IHHSVVGLRSCISEGA-----IIE----- 432
V + + V K K I + L+ + I++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 433 -----DTL----------------LMGADYYETDA-------DRRFLAAK----GSVPIG 460
D L L ++ E D RFL K +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 461 IGKNSHI-------KRAIIDKNAR-------IGDNV-----KIVNS---DSVQEA-ARET 497
G + K I D + + I D + ++ S D ++ A E
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 498 DGYFIKS 504
+ F ++
Sbjct: 577 EAIFEEA 583
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-10
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+I+ GG GTR+ + KP + L LID VS L S ++ I++ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLC-GRCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+++ AY + + ++ S +G + + + + F E FLV+
Sbjct: 58 EYINSAY---------KDYKNIVVIDTSG------KGYIEDLNECIGYFSE----PFLVV 98
Query: 212 AGD--HLYRMDYERFIQAHRETDADITV 237
+ D +L + A
Sbjct: 99 SSDLINLKSKIINSIVDYFYCIKAKTPD 126
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 83/518 (16%), Positives = 143/518 (27%), Gaps = 178/518 (34%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL 150
++L G GTR+ + P V L A ++ + ++ V+ + +
Sbjct: 16 LVLAAGPGTRM-----RSDTPKVLHTL-AGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69
Query: 151 NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLV 210
+ L + GT AV L + +V
Sbjct: 70 -----APLVGELADTLGRTIDVALQDRP--------LGTGHAVLCGLSALPDDYAGNVVV 116
Query: 211 LAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RIIEFS 265
+GD L D I HR A +TV +D+ +G + ++ I+E
Sbjct: 117 TSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDD--PFGYGRILRTQDHEVMAIVE-- 172
Query: 266 EKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
+ D T +R +E+ + G+Y + + L + N
Sbjct: 173 QT-----------DAT----PSQREIREV----NAGVYAFDIAALRSAL-SRLSSNNAQQ 212
Query: 325 ----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL-------GITK 365
++VI S G V A D G + + N + G+T
Sbjct: 213 ELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVT- 271
Query: 366 KPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT---------------------DSVIG 404
+ D P + +D DVT V+G
Sbjct: 272 --VVD------------------PATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVG 311
Query: 405 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG---- 460
+ + + +R+ + I D GA +G
Sbjct: 312 PDTTLTDVAVGDGASVVRTHG-SSSSIGD----GAA------------------VGPFTY 348
Query: 461 ------IGKNSHI------KRAIIDKN-----------ARIGDNVKI------VNSDSVQ 491
+G + + K + I A IG+ I VN D
Sbjct: 349 LRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTS 408
Query: 492 EAARET---DGYFIKSGI-----VTIIKDALIPSGTII 521
+ R T S VTI A +GT++
Sbjct: 409 K--RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV 444
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 5e-06
Identities = 24/265 (9%), Positives = 67/265 (25%), Gaps = 34/265 (12%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+I G +R + + K + L + V++ S ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEA-HGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL--EFLV 210
+ E +G A+ V L + V +
Sbjct: 62 FVREKATQLGIKQFYI-----------AELHTETRGQAETVTLGLEELAKQGVDYQGSIT 110
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
+ +R ++ + +F + ++I+ +EK
Sbjct: 111 VFNIDTFRPNFVFPDISQHSDGYLEV----FQGGGDNWSFAKPEHAGSTKVIQTAEKNP- 165
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPG 330
+ D + + + Y+ + + ++ + + +
Sbjct: 166 --------------ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNE 211
Query: 331 ATSIGMRVQAYLYDGY-WEDIGTIE 354
G+ + +L + G +
Sbjct: 212 LIQKGLNIHYHLIARHEVIFCGVPD 236
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 400 DSVIGEGCVIK-NCKIHHSV-VGLRSCISEGAIIEDTLLMGAD--YYETDADRRFLAAK- 454
S +GE I I V +G R I GA+I G+ Y T A +
Sbjct: 172 YSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI------GSCGFGYVTSAFGQHK--HL 223
Query: 455 ---GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 486
G V I IG N+ I R ++ + + KI N
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFK-HSVVREGSKIDN 261
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 79/449 (17%), Positives = 136/449 (30%), Gaps = 146/449 (32%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
S IIL G GTR+ K P V + A +++ + K +
Sbjct: 10 HSNFAIILAAGKGTRM-----KSDLPKVLHKV-AGISMLEHVFRSVGAIQPEKTVTVVGH 63
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNV 205
+ + L+ + QS + GT AV + E +
Sbjct: 64 KAELVEEVLAG---------------QTEFVTQSEQL-----GTGHAVMMTEPILEGLSG 103
Query: 206 LEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---R 260
LV+AGD L + + I H T+ D +G + ++ R
Sbjct: 104 -HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRNDNAEVLR 160
Query: 261 IIEFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFPG 319
I+E +K D T D E+ KE+ + G YV + + L
Sbjct: 161 IVE--QK-----------DAT----DFEKQIKEI----NTGTYVFDNERLFEAL-KNINT 198
Query: 320 ANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL------ 361
N G ++VI G +V AY + E +G T E+ +
Sbjct: 199 NNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMV 258
Query: 362 -GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT---------------DSVIGE 405
G++ + P + +D DV + IG
Sbjct: 259 NGVS---FVN------------------PEATYIDIDVEIAPEVQIEANVILKGQTKIGA 297
Query: 406 GCVIK-NCKIHHSVVG----LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 460
V+ + S +G + + + E + + D G
Sbjct: 298 ETVLTNGTYVVDSTIGAGAVITNSMIEESSVAD----GVT-------------------- 333
Query: 461 IGKNSHIKR--AIIDKNARIGDNVKIVNS 487
+G +HI R + + IG+ V++ S
Sbjct: 334 VGPYAHI-RPNSSLGAQVHIGNFVEVKGS 361
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 400 DSVIGEGCVIK-NCKIHHSVV-GLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 454
SVIGEG + ++H V G R I GA+I G + + + +A
Sbjct: 167 RSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI------GGEGFGFANEKGVWQKIAQI 220
Query: 455 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 486
G V IG IG N+ I R + + IG+ VK+ N
Sbjct: 221 GGVTIGDDVEIGANTTIDRGALS-DTLIGNGVKLDN 255
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 400 DSVIGEGCVIK-NCKIHH-SVVGLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 454
+S IG G + N I+H +G I G ++ GAD Y + +
Sbjct: 145 NSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV------GADGFGYANDRGNWVKIPQI 198
Query: 455 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 486
G V IG IG + I R +D + IG+ V I N
Sbjct: 199 GRVIIGDRVEIGACTTIDRGALD-DTIIGNGVIIDN 233
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 400 DSVIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 458
+ I GC+I N I I +I+ + L+ + P
Sbjct: 26 NVYIDYGCIIRDNVHIKKGSF-----IGARSILGEYLVDFYNDRINKKH----------P 70
Query: 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 517
+ IG+N+ I+ +I + IGDN + + +++E + + I + I I +
Sbjct: 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTL-SDIQHHVYIGN 129
Query: 518 GTII 521
I
Sbjct: 130 YVNI 133
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 30/140 (21%)
Query: 402 VIGEGCVI-KNCKI---------------HHSVVGLRSCISEGAIIEDTLLMGADYYETD 445
I +G I + H ++G + I +I +
Sbjct: 40 HIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYG----DTIIGDNF 95
Query: 446 ADRRFLAAKGSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYF 501
+ + + IG IG S I + IG+ V I ++ V E + D +
Sbjct: 96 QTGHKVTIRENTKIGNNVKIGTLSDI-----QHHVYIGNYVNIHSNVFVGEKSIIKDFVW 150
Query: 502 IKSGIVTIIKDALIPSGTII 521
+ V + D PS ++
Sbjct: 151 LFPH-VVLTNDPTPPSNELL 169
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 94/524 (17%), Positives = 153/524 (29%), Gaps = 186/524 (35%)
Query: 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLT 143
+++ +IL G GTR+ P V + A ++ + I+++
Sbjct: 2 TKKALSAVILAAGKGTRM-----YSDLPKVLHTI-AGKPMVKHVIDTAHQLGSENIHLIY 55
Query: 144 QFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH 203
+ HL+ NE VL +Q GTA AV+Q F+++
Sbjct: 56 GHGGDLMRTHLA-----------NEQVNWVLQTEQ--------LGTAHAVQQAAPFFKDN 96
Query: 204 NVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 261
+ +VL GD L + E+ I+A E + L G GRI
Sbjct: 97 ENI--VVLYGDAPLITKETLEKLIEAKPENGIALLTVNLD------NPTGY------GRI 142
Query: 262 IEFSEKPKG--EQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFP 318
I + EQ K D ++ KE+ + G+ V L +
Sbjct: 143 IRENGNVVAIVEQ----K-DAN----AEQLNIKEV----NTGVMVSDGASFKKWL-ARVG 188
Query: 319 GANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL----- 361
N G +++I A +V A E G +E ++
Sbjct: 189 NNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLL 248
Query: 362 --GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT-------------------- 399
G+ I D P L +
Sbjct: 249 LEGVM---IYD------------------PARFDLRGTLEHGKDVEIDVNVIIEGNVKLG 287
Query: 400 -DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 458
IG GCV+KN I + V + E +I+ +
Sbjct: 288 DRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGE----------------------KAA 325
Query: 459 IG----------IGKNSHI------KRAIIDKN-----------ARIGDNVKI------V 485
IG + +H+ K++ + K + IG N I
Sbjct: 326 IGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITC 385
Query: 486 NSDSVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 521
N D + +T D F+ S V + A I +GT I
Sbjct: 386 NYDGANK--FKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG G+RLYP+TK
Sbjct: 27 GIILAGGTGSRLYPITK 43
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 92 GIILGGGAGTRLYPLTK 108
GI+L GG+GTRLYP+T+
Sbjct: 6 GIVLAGGSGTRLYPITR 22
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 91/522 (17%), Positives = 165/522 (31%), Gaps = 176/522 (33%)
Query: 83 DPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIY 140
+ ++ S+ +IL G GTR+ P V PL A ++ + + ++
Sbjct: 2 NAMSNSSMSVVILAAGKGTRM-----YSDLPKVLHPL-AGKPMVQHVIDAAMKLGAQHVH 55
Query: 141 VLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200
++ L + L+ + VL A+Q GT A++Q F
Sbjct: 56 LVYGHGGELLKKTLA-----------DPSLNWVLQAEQ--------LGTGHAMQQAAPHF 96
Query: 201 EEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFG--LMKID 256
+ + L+L GD L +D +R + A E + L + +G + +
Sbjct: 97 ADDEDI--LMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLD----NPSGYGRIVRENG 150
Query: 257 EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRD 315
+ I+E K D + D +R E+ + GI V + + L
Sbjct: 151 DVVGIVE--HK-----------DAS----DAQREINEI----NTGILVANGRDLKRWL-S 188
Query: 316 KFPGANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL-- 361
N G +++I A + G ++ E G +E +
Sbjct: 189 LLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAE 248
Query: 362 -----GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVT---------------DS 401
G+ + D P L ++T
Sbjct: 249 KLLLAGVM---LLD------------------PSRFDLRGELTHGRDITIDTNVIIEGHV 287
Query: 402 VIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 460
++G+ I C + + V+G S IS ++ED + A+ +G
Sbjct: 288 ILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA-RLDAN----------------CTVG 330
Query: 461 ----------IGKNSHI------KRAIIDKN-----------ARIGDNVKI------VNS 487
+ + +H+ K+A + K A IG V I N
Sbjct: 331 PFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNY 390
Query: 488 DSVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 521
D + +T D F+ S VT+ A I +GT +
Sbjct: 391 DGANK--FKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG+GTRL+P T
Sbjct: 5 GIILAGGSGTRLHPATL 21
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG+GTRL+P+T+
Sbjct: 6 GIILAGGSGTRLHPITR 22
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.98 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.98 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.95 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.92 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.88 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.87 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.85 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.83 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.83 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.83 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.83 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.82 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.8 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.79 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.78 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.74 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.73 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.73 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.73 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.72 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.72 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.71 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.71 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.65 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.63 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.57 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.56 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.5 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.5 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.49 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.49 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.48 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.48 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.48 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.48 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.46 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.46 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.46 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.46 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.44 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.43 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.42 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.41 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.4 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.4 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.39 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.37 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.36 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.36 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.36 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.36 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.36 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.36 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.35 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.35 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.35 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.33 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.33 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.31 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.31 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.3 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.3 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.3 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.28 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.27 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.27 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.26 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.26 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.26 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.25 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.23 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.23 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.22 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.21 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.2 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.2 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.19 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.18 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.18 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.17 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.16 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.13 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.12 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.12 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.1 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.1 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.09 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.09 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.09 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.05 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.99 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.98 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.97 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.97 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.97 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.97 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.96 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.96 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.85 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.81 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.81 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.81 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.8 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.8 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.8 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.79 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.77 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.77 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.76 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.73 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.7 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.7 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.67 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.67 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.64 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.63 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.62 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.61 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.61 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.61 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.6 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.59 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.59 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.58 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.58 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.57 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.56 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.52 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.47 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.43 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.42 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.4 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.37 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.34 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.33 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.32 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.21 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.2 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.16 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.15 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.09 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.04 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.93 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.37 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.57 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 87.86 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 84.71 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-62 Score=524.18 Aligned_cols=448 Identities=95% Similarity=1.443 Sum_probs=366.7
Q ss_pred CCCCCCCCCCCCcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHH
Q 009971 73 SDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152 (521)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~ 152 (521)
+++.....+.++..|++|+|||||||.|+||+|||..+||+|+||+|++|||+|++++|.++|+++|+|+++++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~ 83 (451)
T 1yp2_A 4 SDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 83 (451)
T ss_dssp ------CCCCSSCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHH
T ss_pred ccccccceecCcccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHH
Confidence 44555566777777778999999999999999999999999999998669999999999999999999999999899999
Q ss_pred HHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcC
Q 009971 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETD 232 (521)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~ 232 (521)
|+.+.+..++..++..+.++++...|.+.+++|..||+++++.++.+++....++||+++||++++.++.++++.|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~ 163 (451)
T 1yp2_A 84 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETD 163 (451)
T ss_dssp HHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTT
T ss_pred HHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcC
Confidence 99864310111000123356666556555667889999999999988864335799999999999999999999999999
Q ss_pred CcEEEEEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHH
Q 009971 233 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNL 312 (521)
Q Consensus 233 aditi~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~l 312 (521)
+++|+++.+.+.+++..||++.+|++++|+.|.|||..+..+.++++.+++...+......++++++|+|+|++++|.++
T Consensus 164 ~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 243 (451)
T 1yp2_A 164 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL 243 (451)
T ss_dssp CSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHH
T ss_pred CcEEEEEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHH
Confidence 99999888765445678999999988999999999987766667777777766544333356799999999999998777
Q ss_pred HhhhCCCCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCce
Q 009971 313 LRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSK 392 (521)
Q Consensus 313 l~~~~~~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (521)
+++.++...+|.+++|+.+++++.+++++.++++|.||||+++|++|++.++.+..+..+ ++++++++++.+.+.|++.
T Consensus 244 l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~-~~~~~~~i~~~~~i~~~~~ 322 (451)
T 1yp2_A 244 LRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRSAPIYTQPRYLPPSK 322 (451)
T ss_dssp HHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSC-SCCSSSCCCCCCCCCCCEE
T ss_pred HHhhcccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchh-ccCCCCeeccCCccCCCeE
Confidence 776555566787899999988678999999999999999999999999999887656666 8899999999999999999
Q ss_pred eecccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEE
Q 009971 393 MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAII 472 (521)
Q Consensus 393 i~~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii 472 (521)
+.++.|.++.||++|+|+.|.|.+++||++|.||++|+|++++++++++++...........|.+.+.||+++.|.+++|
T Consensus 323 i~~~~I~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~I 402 (451)
T 1yp2_A 323 MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAII 402 (451)
T ss_dssp EEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEE
T ss_pred EcceEEeCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEe
Confidence 98888889999999999988888999999999999999999999998777654332222223333368999999999999
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
|++|.||++++|.+.+++.++.++|++++|++|.|+||++++||+||+|
T Consensus 403 g~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 403 DKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp CTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 9999999999999999998888999999999998899999999999987
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-51 Score=429.43 Aligned_cols=384 Identities=33% Similarity=0.593 Sum_probs=301.1
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+|++|+|||||||.|+||+|||..+||+|+|++|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.|... ..
T Consensus 9 mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~--~~ 86 (420)
T 3brk_X 9 LARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFF--RP 86 (420)
T ss_dssp GGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCC--CG
T ss_pred hhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccc--cc
Confidence 3567999999999999999999999999999998658999999999999999999999998899999998753210 00
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+....+.++...+...++.|..||+++++.++.+++....++||+++||++++.++.++++.|+++++++|+++.+.+.+
T Consensus 87 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~ 166 (420)
T 3brk_X 87 ERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRM 166 (420)
T ss_dssp GGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETT
T ss_pred cccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCcc
Confidence 01123555544332113567799999999999888643347899999999998999999999999999999998876544
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d 322 (521)
++..||++.+|++++|+.|.|||..+... . .....+++++|+|+|++++|.+++++..+ ...+
T Consensus 167 ~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 232 (420)
T 3brk_X 167 EATGFGVMHVNEKDEIIDFIEKPADPPGI--P------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRD 232 (420)
T ss_dssp GGGGSEEEEECTTSBEEEEEESCSSCCCB--T------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC------
T ss_pred ccCcccEEEECCCCcEEEeEeCCCccccc--c------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCCcccc
Confidence 56789999999889999999998643210 0 00124699999999999988767754332 1235
Q ss_pred hhhcchHhhhhCCceEEEEEe-----------cceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCc
Q 009971 323 FGSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPS 391 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~-----------~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~ 391 (521)
|..++++.+++++ ++++|.+ +++|.||||+++|++|++.++.+. +... ++.+.+++++.+.+.|++
T Consensus 233 ~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~-~~~~-~~~~~~~i~~~~~i~~~~ 309 (420)
T 3brk_X 233 FGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVV-PDLD-IYDKSWPIWTYAEITPPA 309 (420)
T ss_dssp ----CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSS-CSSC-TTCCSSCCCCCCCCCCCC
T ss_pred chHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCC-chhh-cCCCCCceeeccccCCCc
Confidence 6689999998855 9999999 889999999999999999998765 4445 667888999999999999
Q ss_pred eeec------ccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCC
Q 009971 392 KMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 392 ~i~~------~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~ 465 (521)
.+.. +.+.++.||++|+|.++.|.+++||++|.||++|.|++++++++ +.||+++
T Consensus 310 ~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~ 370 (420)
T 3brk_X 310 KFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHA 370 (420)
T ss_dssp EEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTC
T ss_pred EEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCC
Confidence 9873 66789999999999448999999999999999999999999887 6899999
Q ss_pred EEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEE-cCCeEEECCC
Q 009971 466 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTIIKD 512 (521)
Q Consensus 466 ~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I-~~g~v~I~~~ 512 (521)
+|.+|+||++|.||+++++.+.... ..++.+| ..|+++|.++
T Consensus 371 ~i~~~~ig~~~~i~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~ 413 (420)
T 3brk_X 371 QLSNVVIDHGVVIPEGLIVGEDPEL-----DAKRFRRTESGICLITQS 413 (420)
T ss_dssp EEEEEEECTTCEECTTCEESSCHHH-----HHHHSEECTTSCEEECHH
T ss_pred EEeceEECCCCEECCCCEEeCCCCC-----CCceEEEecCceEEEecc
Confidence 9999999999999999999853221 1123666 5675566544
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=393.62 Aligned_cols=391 Identities=17% Similarity=0.187 Sum_probs=283.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhh-hccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~-~~~~~~~ 165 (521)
+..+.+||||||+||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++++|+.+.. .++.
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~--- 82 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGR--- 82 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTS---
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCC---
Confidence 346899999999999999975 9999999986 9999999999999999999999999999999998632 2211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. ++++ .| ++++||++||+++++++.+...+++|+++||. |+. ..+.++++.|+++++++|+++.+.+
T Consensus 83 ---~-i~~~--~q-----~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~ 151 (501)
T 3st8_A 83 ---T-IDVA--LQ-----DRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLD 151 (501)
T ss_dssp ---C-CEEE--EC-----SSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred ---c-EEEE--Ec-----CCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccC
Confidence 1 2332 22 23599999999999988765567899999999 555 4599999999999999999998876
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CC
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GA 320 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~ 320 (521)
++..||.+..|++|+|+.|.||++.+..+. ..+++++|+|+|++++|..++..... ..
T Consensus 152 --dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~-----------------~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~ 212 (501)
T 3st8_A 152 --DPFGYGRILRTQDHEVMAIVEQTDATPSQR-----------------EIREVNAGVYAFDIAALRSALSRLSSNNAQQ 212 (501)
T ss_dssp --CCTTSCEEEECTTCCEEEEECGGGCCHHHH-----------------HCCEEEEEEEEEEHHHHHHHHTTCCCCSTTC
T ss_pred --CchhccccccccceeEEeeccccCCChhhc-----------------cceeeeceeeeecchhHHHhhhhhccccccc
Confidence 478999999999999999999976543211 13589999999999999888764322 23
Q ss_pred CChhhcchHhhhhCCceEEEEEecceEEec--CCHHHHHHHhhhcc--------cCC----CCCccccccCCCcccCCCC
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDI--GTIEAFYNANLGIT--------KKP----IPDFRYFYDRSAPIYTQPR 386 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~g~w~dI--gt~edy~~An~~ll--------~~~----~~~~~~~~~~~~~i~~~~~ 386 (521)
..+.++++..+...+..+.++..+..|... ++...+.++...+. ... .|... +++.+..|...+.
T Consensus 213 e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~-~i~~dv~IG~dv~ 291 (501)
T 3st8_A 213 ELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATT-WIDVDVTIGRDTV 291 (501)
T ss_dssp SCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGE-EECTTCEECTTCE
T ss_pred ccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccc-cccCceEECCcce
Confidence 445688888888889999999998776554 44444444332221 111 12222 4555566666666
Q ss_pred cCCCceeec-ccc-cceEECCCcEEce-----------eEEeeeEECCCCEECCCCEEcceEEECC-----ccccccccc
Q 009971 387 YLPPSKMLD-ADV-TDSVIGEGCVIKN-----------CKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADR 448 (521)
Q Consensus 387 ~~~~~~i~~-~~i-~~~~Ig~~~~I~~-----------~~I~~s~ig~~~~Ig~~~~I~~s~i~~~-----~~~e~~~~~ 448 (521)
+.+++.+.+ +.+ .+++|+++|.+.+ +.+..+.+|.++.|+++++|...+++++ +|+|. +
T Consensus 292 I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~i---k 368 (501)
T 3st8_A 292 IHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEV---K 368 (501)
T ss_dssp ECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEE---E
T ss_pred ecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEE---c
Confidence 666665542 111 2233333333332 2233334445554444444443222222 12222 5
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCc-eeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~-~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++.||+|+ .|++.+++.+++||+||.||+++++.|.+++.+. +.||++|+||++. |+||++|+|++||+|
T Consensus 369 ~s~Ig~gs---kI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 369 NSTIGTGT---KVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV 444 (501)
T ss_dssp SCEECTTC---EEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred cceecCCc---EEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEE
Confidence 67788887 8999999999999999999999999999998776 6689999998773 889999999999986
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=378.47 Aligned_cols=384 Identities=19% Similarity=0.225 Sum_probs=264.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+.
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~~------------ 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQ------------ 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSSS------------
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCCC------------
Confidence 4899999999999984 789999999987 999999999999999999999998877777665431
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
++++. + .+..|++++++.++..++. ..++||+++||+ +...++.++++.|++.++++++++.+.++ +
T Consensus 76 -i~~v~--~-----~~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~--~ 144 (468)
T 1hm9_A 76 -TEFVT--Q-----SEQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--P 144 (468)
T ss_dssp -SEEEE--C-----SSCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--C
T ss_pred -cEEEe--C-----CccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCC--C
Confidence 23332 1 1248999999999988752 247899999999 45677999999999988999888877643 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..|++++|..|.|||..... ....+++++|+|+|+++.|.+++++.... ...+.
T Consensus 145 ~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~ 207 (468)
T 1hm9_A 145 FGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 207 (468)
T ss_dssp TTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCT
T ss_pred CceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEH
Confidence 67999999888999999998752110 01246999999999999776666543322 22345
Q ss_pred hcchHhhhhCCceEEEEEecceEEe--cCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcCCC
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWED--IGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~d--Igt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
+++++.+++.+.+++++.++++|.+ |+|++||..|+..+..+. .|... ++++.+.|..++.+.|+
T Consensus 208 ~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~i~~~~~i~~~ 286 (468)
T 1hm9_A 208 TDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEAT-YIDIDVEIAPEVQIEAN 286 (468)
T ss_dssp THHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGC-EECTTCEECTTCEECSS
T ss_pred HHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCee-EECCCcEECCCCEECCC
Confidence 8999999887889999999999977 559999999987553221 11111 33333444433333333
Q ss_pred ceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-ccccccCC
Q 009971 391 SKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKG 455 (521)
Q Consensus 391 ~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~~~ 455 (521)
+.+. ++.|.++.||++|.|+.+.|.+++||++|.||++|.|. ++++..+........ .++.|+++
T Consensus 287 ~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~ 366 (468)
T 1hm9_A 287 VILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGEN 366 (468)
T ss_dssp CEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTT
T ss_pred cEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCC
Confidence 3332 23334445555555555455566666666666666666 333333222111111 23333444
Q ss_pred CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 456 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 456 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+ .|++.+.+.++.||++|.||+++++.+.++... .+.+|++++|+.+. ++||++++|++||+|
T Consensus 367 ~---~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 367 T---KAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTI 435 (468)
T ss_dssp C---EEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred c---EeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEE
Confidence 3 344444455678999999999999987554433 34566666665552 678999999998875
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=376.89 Aligned_cols=356 Identities=19% Similarity=0.282 Sum_probs=266.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|++++. +.+++.+.+.
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------- 66 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------- 66 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT----------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC----------
Confidence 6899999999999999999999999999986 9999999999999999999999876 7777765311
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++.. +.|+.|++++++.++. .++||+++||+++. .+++++++ .++.++++.+.++ +
T Consensus 67 ~i~~~~~------~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~--~ 127 (401)
T 2ggo_A 67 EISIVTQ------KDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSN--P 127 (401)
T ss_dssp TCEEEEC------CTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSC--C
T ss_pred cEEEEeC------CCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCC--C
Confidence 1333321 1134788888876543 36899999999776 56877776 3567888777543 4
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-hh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~~ 325 (521)
..|+.+..+++|++..+.|||..+. ++++++|+|+|++++|+. ++...+ ...++ ..
T Consensus 128 ~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~ 185 (401)
T 2ggo_A 128 KDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERGELELT 185 (401)
T ss_dssp SSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSSCBCHH
T ss_pred cceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCCceEHH
Confidence 5788888888899999999885431 469999999999999864 443322 11222 36
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCC-CCccccccCCCcccCCCCcCCCceee-cccc-cceE
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPI-PDFRYFYDRSAPIYTQPRYLPPSKML-DADV-TDSV 402 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~ 402 (521)
++++.+ +.+.+++++..+++|.||+||+||..|++.++.+.. +....++++.+.+...+.+.+.+.+. ++.+ .++.
T Consensus 186 ~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~ 264 (401)
T 2ggo_A 186 DAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVY 264 (401)
T ss_dssp HHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEE
T ss_pred HHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeE
Confidence 788877 546789999999999999999999999998876543 21111445555555555555555553 3444 4678
Q ss_pred ECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECC
Q 009971 403 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480 (521)
Q Consensus 403 Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 480 (521)
||++|.|+. |.|. +++||++|.||++|.|++++++++ +.|++++.|.+++||+++.||+
T Consensus 265 Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~~Ig~ 325 (401)
T 2ggo_A 265 IGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDVNFGA 325 (401)
T ss_dssp ECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTCEECT
T ss_pred ECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCcEECC
Confidence 899999977 8887 789999999999999988887776 5899999999999999999999
Q ss_pred CcEEeC------------------------CCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 481 NVKIVN------------------------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 481 ~~~i~~------------------------~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.|.+ ...+++++.+|.+++|..| ++||++++|++||+|
T Consensus 326 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g-v~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 326 GTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG-VKIGAYARIYPGAVV 389 (401)
T ss_dssp TCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCC-cEECCCcEECCCCeE
Confidence 999973 2334444444445555555 778888888888764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=371.19 Aligned_cols=383 Identities=17% Similarity=0.189 Sum_probs=263.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+|.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+. .
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~-~-------- 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP-S-------- 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC-C--------
Confidence 479999999999999996 789999999986 999999999999999999999999888888887651 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
++++. + .+..|++++++.++..+++ .++||+++||+ +...++.++++.|++ .+++++..+..+
T Consensus 74 ---~~~v~--~-----~~~~g~~~~i~~~~~~~~~--~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~- 138 (459)
T 4fce_A 74 ---LNWVL--Q-----AEQLGTGHAMQQAAPHFAD--DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDN- 138 (459)
T ss_dssp ----CEEE--C-----SSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSC-
T ss_pred ---cEEEe--C-----CCCCCcHHHHHHHHHhcCC--CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCC-
Confidence 22322 1 1248999999999887752 47999999999 445679999998865 566777766543
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d 322 (521)
+..|+.+..| ++++..+.|||...... ...+++++|+|+|+++.|.++++... .....
T Consensus 139 -~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 199 (459)
T 4fce_A 139 -PSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNNAQGEF 199 (459)
T ss_dssp -CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSC
T ss_pred -CCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 5678888887 79999999886432110 12469999999999998866766422 12233
Q ss_pred hhhcchHhhhhCCceEEEEEecceE--EecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w--~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+++++.+++.+.+++++..+++| ++|+|++||..|+..+..+. .|... ++++.+.+..++.+.
T Consensus 200 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~-~~~~~~~ig~~~~i~ 278 (459)
T 4fce_A 200 YITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRF-DLRGELTHGRDITID 278 (459)
T ss_dssp CTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGE-EEEEEEEECSSCEEC
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeE-EEeCcEEECCCcEEC
Confidence 4688999998888999999999765 67999999999986554221 12212 344555566666666
Q ss_pred CCceee-------------cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcc-eEEECCcccccccc-ccccc
Q 009971 389 PPSKML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLA 452 (521)
Q Consensus 389 ~~~~i~-------------~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~-s~i~~~~~~e~~~~-~~~~~ 452 (521)
|.+.+. ++.+.++.||++|.|+. |.|.+++||++|.||++|+|.. +.+.++..+..... ..+.+
T Consensus 279 ~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i 358 (459)
T 4fce_A 279 TNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARL 358 (459)
T ss_dssp TTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEE
T ss_pred CCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEE
Confidence 666553 22233445555555554 5445555555555555555542 22222221111111 23344
Q ss_pred cCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCc-eeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~-~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++++ .|++.+.+.+++|+++|.||+++++.+.+++.+. ++||++++|+.|. ++||++|+||+||+|
T Consensus 359 ~~~~---~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 359 GKGS---KAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430 (459)
T ss_dssp CTTC---EEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred cCCC---EECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 4444 4555556667899999999999999886665553 5566666666552 778999999999875
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=360.04 Aligned_cols=383 Identities=19% Similarity=0.210 Sum_probs=265.8
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
++++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+.
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------- 69 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE--------- 69 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC---------
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC---------
Confidence 3578999999999999984 689999999986 999999999999999999999998878888777641
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
+ ++++.. .+..|++++++.++..+++ .++||+++||+ +...++.++++.|.+ ++++++..+.++
T Consensus 70 --~-~~~v~~-------~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~ 135 (456)
T 2v0h_A 70 --Q-VNWVLQ-------TEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDN 135 (456)
T ss_dssp --C-CEEEEC-------SCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSS
T ss_pred --C-cEEEeC-------CCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCC
Confidence 1 233321 1238999999999877742 47999999999 445779999998866 577777766543
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (521)
+..|+.+..| ++++..+.||+...... ...+++++|+|+|+++.|.++++..... ..
T Consensus 136 --~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 195 (456)
T 2v0h_A 136 --PTGYGRIIRE-NGNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNNAQGE 195 (456)
T ss_dssp --CTTSCEEEEE-TTEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCC
T ss_pred --CCccceEEEc-CCcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhcccccccc
Confidence 5568888877 78999999986532110 1246899999999999776666543221 22
Q ss_pred ChhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~ 387 (521)
.+.+++++.+++.+.+++++..+++ |++|+|++||.+|+..+..+. .|... ++++...+..++.+
T Consensus 196 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ig~~~~I 274 (456)
T 2v0h_A 196 YYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARF-DLRGTLEHGKDVEI 274 (456)
T ss_dssp CCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGE-EEEEEEEECSSCEE
T ss_pred EEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCcc-EEcCceEECCCCEE
Confidence 3458899998887889999999765 579999999999987654321 01112 33444455555555
Q ss_pred CCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccccccCCCc-------
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV------- 457 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~~~~~~~~------- 457 (521)
.+++.+. .++.||++|.|+. |.|.+++||++|.|+++|.|.++.+..+......+. ..+.||+++.
T Consensus 275 ~~~~~i~----~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i 350 (456)
T 2v0h_A 275 DVNVIIE----GNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEI 350 (456)
T ss_dssp CSSEEEE----EEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred cCCcEEc----CCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEE
Confidence 5555542 3567777777776 777777788888777777776655544433221111 1233333320
Q ss_pred -ceeeCCCCEE------eeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 458 -PIGIGKNSHI------KRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 458 -~~~Ig~~~~i------~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+..|++++.+ .++.||+||.||+++++.+.++... .++||++++|+.+. ++||++++|++||+|
T Consensus 351 ~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 351 KKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427 (456)
T ss_dssp ESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEE
T ss_pred eccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 0112333333 2358889999999998887544333 34566666665552 778999999999875
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=289.88 Aligned_cols=246 Identities=21% Similarity=0.298 Sum_probs=194.5
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+.+.- ...
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~--~l~ 77 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEH--QIQ 77 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC---------
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhh--hhh
Confidence 358999999999999999999999999999987 99999999999999999999999999999999876432110 000
Q ss_pred -C-------------CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-----HHHHHHHH
Q 009971 168 -E-------------GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-----YERFIQAH 228 (521)
Q Consensus 168 -~-------------~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-----l~~ll~~h 228 (521)
. ..+.+....+ .+..||+++++.++.+++ .++|++++||++++.+ +.++++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~Gt~~al~~a~~~l~---~~~~lv~~~D~~~~~~~~~~~l~~l~~~~ 149 (281)
T 3juk_A 78 GTNKENALKSIRNIIEKCCFSYVRQ-----KQMKGLGHAILTGEALIG---NEPFAVILADDLCISHDHPSVLKQMTSLY 149 (281)
T ss_dssp -CCHHHHHHHHHHHHHHCEEEEEEC-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEEECTTSCCHHHHHHHHH
T ss_pred cccchhhhhhhhccccCccEEEEec-----CCCCCcHHHHHHHHHHcC---CCCEEEEeCCeeccCccchHHHHHHHHHH
Confidence 0 0012211122 234899999999998885 3789999999999888 99999999
Q ss_pred HhcCCcEEEEEEecCcccCcceeEEEeCC--CC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEE
Q 009971 229 RETDADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI 304 (521)
Q Consensus 229 ~~~~aditi~~~~~~~~~~~~~g~v~~d~--~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyif 304 (521)
.++++ .++++...+.+++..||++..|+ +| +|..|.|||..... .++++++|+|+|
T Consensus 150 ~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiYi~ 209 (281)
T 3juk_A 150 QKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRYIL 209 (281)
T ss_dssp HHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEE
T ss_pred HHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEEEE
Confidence 98887 67777776555678999999986 77 99999999974321 146899999999
Q ss_pred eHHHHHHHHhhhCCC--CCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 305 SKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 305 s~~vl~~ll~~~~~~--~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
++++|. .+....+. ......++++.+++.+ ++++|.++++|.|||||++|++|++.++..
T Consensus 210 ~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 210 TPDIFE-ILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp CTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 999986 55532221 1122488999998855 999999999999999999999999988754
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=273.24 Aligned_cols=237 Identities=24% Similarity=0.366 Sum_probs=192.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~ 165 (521)
.+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++. .+++.+++.....+++
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~~~~~--- 97 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEFGV--- 97 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC---
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhccccCc---
Confidence 3569999999999999999999999999999876 9999999999999999999999975 4778888876433321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.+.+. .+ .+..|++++++.++..++ .++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 98 ----~i~~~--~~-----~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 162 (269)
T 4ecm_A 98 ----SFTYR--VQ-----DKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD- 162 (269)
T ss_dssp ----EEEEE--EC-----SSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSC-
T ss_pred ----eEEEe--eC-----CccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCC-
Confidence 12222 11 124899999999988875 4799999999999988999999999989999998887653
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF- 323 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~- 323 (521)
+..||++..| +|+|+.|.|||..+. ++++++|+|+|++++|. .+....+ ...++
T Consensus 163 -~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ge~~ 218 (269)
T 4ecm_A 163 -PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARGELE 218 (269)
T ss_dssp -GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTSCBC
T ss_pred -CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCCeee
Confidence 5689999887 499999999985321 46999999999999885 4543222 12333
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCC
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~ 367 (521)
..++++.+++.+ ++.++.++++|.||||+++|.+|++.+++..
T Consensus 219 l~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 219 ITDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp HHHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 488999998855 8999999999999999999999999887654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=270.09 Aligned_cols=245 Identities=23% Similarity=0.305 Sum_probs=187.8
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc----
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN---- 161 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~---- 161 (521)
+++.|+|||||||.||||+|+|+.+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+...
T Consensus 5 ~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 83 (302)
T 2e3d_A 5 NTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_dssp CCSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC
T ss_pred hhcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhh
Confidence 34568999999999999999999999999999986 9999999999999999999999998899999987532100
Q ss_pred -CCCC----------cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc-----c---cHH
Q 009971 162 -MGGY----------KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR-----M---DYE 222 (521)
Q Consensus 162 -~~~~----------~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~-----~---dl~ 222 (521)
.+.. .....+.++. + .+..||+++++.++..++ .++|++++||++++ . ++.
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~l~ 153 (302)
T 2e3d_A 84 KRVKRQLLDEVQSICPPHVTIMQVR--Q-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLA 153 (302)
T ss_dssp ----CHHHHHHHHTSCTTCEEEEEE--C-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEECTTSSCTTTSTHH
T ss_pred hccchhhhhhhhhccccCcceEEee--C-----CccCCHHHHHHHHHHHcC---CCcEEEEcCCccccCccccchHHHHH
Confidence 0000 0001122221 1 234899999999998875 36899999999876 2 799
Q ss_pred HHHHHHHhcCCcEEEEEEecCcccCcceeEEEeC----CCC---CeEEeeeCCChhhhhhcccccccccCCchhhccCCc
Q 009971 223 RFIQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295 (521)
Q Consensus 223 ~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d----~~g---rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (521)
++++.|++.++ +++++.+.+ ++..||++..+ ++| +|..|.|||..... .++
T Consensus 154 ~l~~~~~~~~~-~~i~~~~~~--~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~-------------------~~~ 211 (302)
T 2e3d_A 154 EMIRRFDETGH-SQIMVEPVA--DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSN 211 (302)
T ss_dssp HHHHHHHHHCC-EEEEEEECS--CGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-------------------SCS
T ss_pred HHHHHHHhcCC-cEEEEEEcc--CCCCccEEEecccccCCCCceeEEEEEECCCCCcc-------------------ccc
Confidence 99999988777 677776653 46789998874 456 89999999864221 146
Q ss_pred eeeEEEEEEeHHHHHHHHhhhCCC--CCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 296 IASMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 296 l~~~GIyifs~~vl~~ll~~~~~~--~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
++++|+|+|++++|. .++...+. ...+..++++.+++.+ +++++.++++|.||||+++|++|++.++.
T Consensus 212 ~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~~~~ 281 (302)
T 2e3d_A 212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVEYGI 281 (302)
T ss_dssp EEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCSCEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence 999999999999885 55433331 1223478888888755 99999999999999999999999976653
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-32 Score=264.76 Aligned_cols=247 Identities=21% Similarity=0.302 Sum_probs=181.1
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhc--cCCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~ 165 (521)
|+|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+...+ ++...
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 358999999999999999999999999999986 999999999999999999999999989999999764210 11000
Q ss_pred cCCCcEEEeecccCC-----CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEE
Q 009971 166 KNEGFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~ 240 (521)
.+.+.++++.....+ .+.....||+++++.++.+++. .++|++++||++++.++.++++.|.++++++|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~ 157 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC--CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence 000012222110000 0001148999999999887742 478999999999888999999999888888877543
Q ss_pred ecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
+ ++..|+++.+| +|+|..|.|||... .+++++|+|+|++++|. .+.. ..
T Consensus 158 ~----~~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~---~~ 206 (259)
T 1tzf_A 158 F----PPGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN---DA 206 (259)
T ss_dssp C----CCCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---TT
T ss_pred c----CCCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---cc
Confidence 2 35679988888 79999999988532 25899999999998874 3321 22
Q ss_pred CChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
.++..++++.+++.+ +++++.++++|.||||++||.+++..+.....|
T Consensus 207 ~~~~~~~i~~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~~p 254 (259)
T 1tzf_A 207 TTWEQEPLMTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp CCTTTHHHHHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred cccHHHHHHHHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcCCCC
Confidence 346678898888744 899999999999999999999999988765544
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=269.45 Aligned_cols=246 Identities=19% Similarity=0.272 Sum_probs=170.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc-----C
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN-----M 162 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~-----~ 162 (521)
+.|+|||||||.|+||+|+|+.+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+... .
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 468999999999999999999999999999986 9999999999999999999999998899999986532100 0
Q ss_pred CC----C---c-CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc---ccHHHHHHHHHhc
Q 009971 163 GG----Y---K-NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR---MDYERFIQAHRET 231 (521)
Q Consensus 163 ~~----~---~-~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~---~dl~~ll~~h~~~ 231 (521)
+. . . ....+.++. + .+..||+++++.++..++ .++|++++||++++ .++.++++.|++.
T Consensus 92 ~~~~~~~~~~~~~g~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~ 161 (297)
T 2ux8_A 92 GKSLDVLDGTRLKPGNIAYVR--Q-----QEPMGLGHAVWCARDIVG---DEPFAVLLPDDFMFGQPGCLKQMVDAYNKV 161 (297)
T ss_dssp TCCGGGGTTSCCSTTSEEEEE--C-----CSCCCHHHHHHTTHHHHC---SSCEEEECTTEEEESSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhcccCCCceEEEe--C-----CCCCChHHHHHHHHHHcC---CCcEEEEeCCeecCCChHHHHHHHHHHHhc
Confidence 00 0 0 001133332 1 124899999999988775 37899999999877 5699999999887
Q ss_pred CCcEEEEEEecCcccCcceeEEEeCC--CC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHH
Q 009971 232 DADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD 307 (521)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~~d~--~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~ 307 (521)
++ .++++.+.+..++..||++..|+ ++ +|..|.|||..... .++++++|+|+|+++
T Consensus 162 ~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~ 221 (297)
T 2ux8_A 162 GG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGRYILQPE 221 (297)
T ss_dssp CS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEEEEECTH
T ss_pred CC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEEEEECHH
Confidence 76 56666655434566798887663 45 89999999853221 136899999999999
Q ss_pred HHHHHHhhhCCC-CCCh-hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 308 VMLNLLRDKFPG-ANDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 308 vl~~ll~~~~~~-~~d~-~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
+|. .++...+. ..++ ..++++.+++. .+++++.++++|.||||+++|.+|++.++..
T Consensus 222 ~l~-~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~ 280 (297)
T 2ux8_A 222 VMR-ILENQGKGAGGEIQLTDAMQRMIGD-QPFHGVTFQGTRYDCGDKAGFIQANLAVALS 280 (297)
T ss_dssp HHH-HHHHTC--------CCTTGGGGTTT-SCEEEEECSSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHH-HHHhhCCCCCCeeEHHHHHHHHHhc-CCEEEEEecceEEeCCCHHHHHHHHHHHHhc
Confidence 886 44433322 1122 47888888874 4999999999999999999999999877644
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=267.58 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=189.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--C---
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--M--- 162 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~--- 162 (521)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.|. +
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 358999999999999999999999999999986 9999999999999999999999998889998876432210 0
Q ss_pred CC--------Cc-CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--ccHHHHHHHHHhc
Q 009971 163 GG--------YK-NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRET 231 (521)
Q Consensus 163 ~~--------~~-~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~ 231 (521)
+. .+ ....+.++. + .+..||+++++.++..+.+ ..+.|++++||++++ .++.++++.|.+.
T Consensus 90 ~~~~~~~~~~~~~~g~~i~~~~--~-----~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~ 161 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLIKAVPVT--Q-----DKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEF 161 (323)
T ss_dssp TCHHHHHHTTHHHHHCEEEEEE--C-----SSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTT
T ss_pred chhhhhhhhhccccCcceEEEe--C-----CccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhc
Confidence 00 00 001122221 1 1248999999999877752 123399999999776 5699999999877
Q ss_pred CCcEEEEEEecCcccCcceeEEEeC----CCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEe
Q 009971 232 DADITVAALPMDEKRATAFGLMKID----EEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (521)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~~d----~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (521)
++ .++++.+.+.+++..||++..| +++ +|..|.|||..... .+++.++|+|+|+
T Consensus 162 ~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~GiY~~~ 221 (323)
T 2pa4_A 162 GG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAATGRYLLD 221 (323)
T ss_dssp CS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEE
T ss_pred CC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEEEEEEEC
Confidence 65 5666666654456789998876 454 99999999854221 1468999999999
Q ss_pred HHHHHHHHhhhCCCC-CCh-hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCC
Q 009971 306 KDVMLNLLRDKFPGA-NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (521)
Q Consensus 306 ~~vl~~ll~~~~~~~-~d~-~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~ 367 (521)
+++|. .+....+.. ..+ ..++++.+++.+.+++++.++++|.||||++||.+|++.++...
T Consensus 222 ~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~ 284 (323)
T 2pa4_A 222 RKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSH 284 (323)
T ss_dssp THHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTC
T ss_pred HHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcC
Confidence 99886 444333221 122 37899999886789999999999999999999999998776543
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-31 Score=265.39 Aligned_cols=258 Identities=14% Similarity=0.175 Sum_probs=189.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceec--CCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMG 163 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI--~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~ 163 (521)
||+|+|||||||.|+||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +.+.+|+.+.+.++..
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIP 76 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTSC
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCCc
Confidence 5678999999999999997 6999999 476 99999999999999999999999985 8999999876554321
Q ss_pred CCcCCCcEEEeeccc--------CCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHh---c
Q 009971 164 GYKNEGFVEVLAAQQ--------SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE---T 231 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q--------~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~---~ 231 (521)
+.++.... ......+++||++++++++.+++ ++|||++||++++.+ +.++++.|.+ +
T Consensus 77 -------i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~----~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~ 145 (303)
T 3pnn_A 77 -------VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR----EPFAVINADDFYGRNGFEVLARKLMTLEGK 145 (303)
T ss_dssp -------EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC----SCEEEEESSCBCCHHHHHHHHHHHHTTTTC
T ss_pred -------EEEEecccccccccccccccccccCCcHHHHHHHHHhcC----CCEEEEECCeecCHHHHHHHHHHHHHhccc
Confidence 22221110 00001135899999999987773 689999999999876 9999999976 5
Q ss_pred CCcEEEEEEecCcccCcce-----eEEEeCCCCCeEEeeeCCChhhhhh-cccccccccCCchhhccCCceeeEEEEEEe
Q 009971 232 DADITVAALPMDEKRATAF-----GLMKIDEEGRIIEFSEKPKGEQLKA-MKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (521)
Q Consensus 232 ~aditi~~~~~~~~~~~~~-----g~v~~d~~grV~~i~ekp~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (521)
++++++++.+.++. ...| |++.+|++|+|+.|.|||+...... ..+... .........++++++|+|+|+
T Consensus 146 ~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~---~g~~~~~~~~~~i~~GiY~f~ 221 (303)
T 3pnn_A 146 QGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE---TGKICTLAEDAPVSMNMWGFT 221 (303)
T ss_dssp SSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT---TSCEEEECTTCEEEEEEEEEC
T ss_pred cCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc---ccccccCCCCCEEEEEEEEEC
Confidence 68889988876532 1344 7888998899999999986421000 000000 000000012469999999999
Q ss_pred HHHHHHHHh--------hhC-CCCCChhhcchHhhhhCCc-eEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 306 KDVMLNLLR--------DKF-PGANDFGSEVIPGATSIGM-RVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 306 ~~vl~~ll~--------~~~-~~~~d~~~dil~~li~~~~-~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
+++|..+.+ ... .....+..++++.+++.+. ++++|.++++|+||||+++|.+|+..+..
T Consensus 222 ~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 222 PDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp THHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 999874432 111 1223346899999988776 99999999999999999999999987654
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=256.91 Aligned_cols=226 Identities=11% Similarity=0.087 Sum_probs=173.0
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhhh-ccCCCCcCCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYA-SNMGGYKNEG 169 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~-~~~~~~~~~~ 169 (521)
+||||||.||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+ +.+++.+... ++. .
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~------~ 73 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGI------K 73 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTC------S
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCC------C
Confidence 79999999999999999999999999987 999999999999 799999999998866 6666655321 111 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhh---cCcceEEEEeCCeec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE---HNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~---~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.+.++.. + .+..||++++++++..+.. ..+++|+|++||+++ +.++.++ .++++.++++.+.+.
T Consensus 74 ~~~~~~~-~-----~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 74 QFYIAEL-H-----TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp SEEEEEE-S-----SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred CceEEEe-C-----CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 1112111 1 1248999999999998831 124789999999988 4556543 256778888887653
Q ss_pred cCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHH-HHHHH----HhhhCC
Q 009971 246 RATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNL----LRDKFP 318 (521)
Q Consensus 246 ~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~l----l~~~~~ 318 (521)
+ .||++..|++| +|+.|.||+.. ++++++|+|+|++. .|.+. ++...+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 89999999888 99999999432 35999999999975 33322 322211
Q ss_pred ---CCCChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhh
Q 009971 319 ---GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 319 ---~~~d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ 362 (521)
....+.+++++.+++.+.++.++.++ ++|+||||+++|.++...
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 23345689999999888999999996 899999999999998754
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=255.03 Aligned_cols=234 Identities=24% Similarity=0.352 Sum_probs=183.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEec-CChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|+|+|||||||.||||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|++. ++.+.+.+++.++..|++
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~---- 75 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGL---- 75 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC----
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcccccCc----
Confidence 358999999999999999999999999999986 99999999999999999998874 566888899887543321
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCee-ccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.+.+. .+. .+.|+++++..++.++. .++++++.||++ ++.++.++++.|.+.+.+.++++.+..+
T Consensus 76 ---~i~~~--~~~-----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d- 141 (293)
T 1fxo_A 76 ---DLQYA--VQP-----SPDGLAQAFLIGESFIG---NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD- 141 (293)
T ss_dssp ---EEEEE--ECS-----SCCCGGGHHHHTHHHHT---TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC-
T ss_pred ---eEEEe--eCC-----CCCCHHHHHHHHHHHhC---CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 12222 121 13799999999988875 368888899994 4678999999998777778887776553
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF- 323 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~- 323 (521)
+..||++..|++|+|+.|.|||..+. ++++++|+|+|+++++.. +....+ ...++
T Consensus 142 -p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ge~~ 198 (293)
T 1fxo_A 142 -PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDI-ARDLKPSPRGELE 198 (293)
T ss_dssp -GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHH-HHHCCCCTTSSCC
T ss_pred -cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHH-HHhcCcccCCcee
Confidence 56799999998999999999985332 358999999999999864 433222 12223
Q ss_pred hhcchHhhhhCCceEEEEEec-ce-EEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~-w~dIgt~edy~~An~~ll 364 (521)
.+++++.+++.+ ++.++... ++ |.||||++||.+|+..+.
T Consensus 199 ~td~~~~~l~~g-~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 199 ITDVNRAYLERG-QLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp HHHHHHHHHHTT-CEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 378888888744 67777775 74 999999999999987664
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=252.44 Aligned_cols=233 Identities=22% Similarity=0.352 Sum_probs=182.1
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEec-CChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+...+++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g~~~g~----- 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGV----- 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTS-----
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhccccCc-----
Confidence 37999999999999999999999999999986 99999999999999999999886 667888899887443321
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCee-ccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
.+.++. +. ++.|+++++..++.++. .++++++.||++ ++.++.++++.|.+.+.+.++++.+..+
T Consensus 77 --~i~~~~--~~-----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 142 (295)
T 1lvw_A 77 --RFSYRV--QE-----EPRGIADAFIVGKDFIG---DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD-- 142 (295)
T ss_dssp --EEEEEE--CS-----SCCCGGGHHHHTHHHHT---TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--
T ss_pred --eEEEee--CC-----CCCChHHHHHHHHHHhC---CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--
Confidence 122221 21 13799999999988875 367888889994 4678999999998777778887777654
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-h
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-G 324 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~ 324 (521)
+..||++..|++|+|+.|.|||..+. ++++++|+|+|+++++.. +....+ ...++ .
T Consensus 143 p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~-~~~~~~~~~ge~~~ 200 (295)
T 1lvw_A 143 PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEI-ARRIEPSDRGELEI 200 (295)
T ss_dssp CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHH-HHHCCCCTTSCCCH
T ss_pred cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHH-HHhcCCcccCceeH
Confidence 55799999998999999999985332 358999999999999864 433222 12222 3
Q ss_pred hcchHhhhhCCceEEEEEec-ce-EEecCCHHHHHHHhhhcc
Q 009971 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~-g~-w~dIgt~edy~~An~~ll 364 (521)
+++++.+++. .++.++.+. ++ |.||||++||.+|+..+.
T Consensus 201 td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 201 TSVNEEYLRM-GKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp HHHHHHHHHT-TCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 7888888874 466777675 64 999999999999998664
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=253.55 Aligned_cols=232 Identities=22% Similarity=0.330 Sum_probs=181.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEec-CChHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|++||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~------ 76 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGI------ 76 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC------
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcccccCc------
Confidence 7999999999999999999999999999986 99999999999999999999886 667888888877433321
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
. +.++. +. ++.|+++++..++.+++ .++++++.||+ +++.++.++++.|.+.+.+.+++..+..+ +
T Consensus 77 ~-i~~~~--~~-----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p 143 (296)
T 1mc3_A 77 Q-LEYAE--QP-----SPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--P 143 (296)
T ss_dssp E-EEEEE--CS-----SCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--C
T ss_pred e-EEEec--cC-----CCCCHHHHHHHHHHHhC---CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--c
Confidence 1 22221 21 13799999999988885 25788888999 44678999999997777777887776554 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-hh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~~ 325 (521)
..||++..|++|+|+.|.|||..+. ++++++|+|+|+++++. .++...+ ...++ .+
T Consensus 144 ~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ge~~~t 201 (296)
T 1mc3_A 144 ERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEIT 201 (296)
T ss_dssp SSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCHH
T ss_pred ccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHH-HHHhcCccccCCccHH
Confidence 5799999988899999999985332 35899999999999986 4443222 12223 37
Q ss_pred cchHhhhhCCceEEEEEec-ce-EEecCCHHHHHHHhhhcc
Q 009971 326 EVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~-g~-w~dIgt~edy~~An~~ll 364 (521)
++++.+++. .++.++.+. ++ |.||||++||.+|+..+.
T Consensus 202 d~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 202 SINQMYLEA-GNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp HHHHHHHHT-TCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 888888874 467777775 74 999999999999998664
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=255.09 Aligned_cols=243 Identities=18% Similarity=0.286 Sum_probs=156.6
Q ss_pred CccEEEEEEeCCCCCCCCcccc-CCCccceecC-CCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTK-KRAKPAVPLG-ANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMG 163 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~-~~PK~LlpI~-G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~ 163 (521)
.++|+|||||||.||||+|||. .+||+|+||+ |+ |||+|+++++.++ +++|+|++++.. +.+.+++.+. ++
T Consensus 2 ~~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~--~~-- 75 (308)
T 2qh5_A 2 SLKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE--IK-- 75 (308)
T ss_dssp -CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT--CS--
T ss_pred CCccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh--hC--
Confidence 3568999999999999999997 8999999995 65 9999999999999 999999999875 5777877652 11
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeec-ccc-HHHHHHH---HHhcCCcEEEE
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQA---HRETDADITVA 238 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~---h~~~~aditi~ 238 (521)
...+.++... +..||+++++.++..+. .++.||+++||+++ +.+ +.++++. |.+.++++|+.
T Consensus 76 ----~~~~~~i~~~-------~~~gt~~al~~a~~~l~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 142 (308)
T 2qh5_A 76 ----NKSVGFLLES-------LSKNTANAIALSALMSD--KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFG 142 (308)
T ss_dssp ----SCEEEEEEES-------SCCCHHHHHHHHHHTSC--TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----CCccEEEeCC-------CCCChHHHHHHHHHHhC--CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1012333211 13899999999987773 13469999999977 666 9999987 77777788888
Q ss_pred EEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC
Q 009971 239 ALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP 318 (521)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~ 318 (521)
+.+.. ++..||++..|++++|..|.|||.......+ .....+++++|+|+|++++|.+.+++..+
T Consensus 143 ~~~~~--~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-------------~~~g~~~~n~Giy~~~~~~ll~~l~~~~p 207 (308)
T 2qh5_A 143 VSIDK--PNTEFGYIESPNGLDVKRFIEKPSLDKAIEF-------------QKSGGFYFNSGMFVFQAGVFLDELKKHAP 207 (308)
T ss_dssp EECSS--CCTTSEEEECSSSSBCSEEEESCCHHHHHHH-------------HHHCCEEEEEEEEEEEHHHHHHHHHHHCH
T ss_pred EecCC--CCCCceEEEECCCCEEEEEEECCChHHHHHH-------------hhcCCeEEEeEEEEEEHHHHHHHHHHhCh
Confidence 87654 3467999988877999999999986532111 00124699999999999886444443221
Q ss_pred C------------C------CChh---hcchH--------h-hhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 319 G------------A------NDFG---SEVIP--------G-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 319 ~------------~------~d~~---~dil~--------~-li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
. . .++. .++++ . +++++.++++++++++|.||||+++|.+++..-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 208 TILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred HHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 1 0 1111 24443 2 566578999999999999999999999998654
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=246.94 Aligned_cols=235 Identities=20% Similarity=0.297 Sum_probs=172.9
Q ss_pred EEEEEEeCCCCCCCCccc-cCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 90 VLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT-~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
|++||||||.||||+||| ..+||+|+|++|.+|||+|+++++.++ |+++|+|++++.. ..+.+++.+...+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~------ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDE------ 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGG------
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccc------
Confidence 799999999999999999 779999999998349999999999996 8999999999864 5677777652111
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccc--cHHH----HHHHHHhcCCcEEEEEE
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM--DYER----FIQAHRETDADITVAAL 240 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~--dl~~----ll~~h~~~~aditi~~~ 240 (521)
. + ++.+. ..||+.++..+...+. ..+.+++++||+++.. ++.. +++.|.++++.+|+.+.
T Consensus 76 --~-i-i~e~~--------~~gta~ai~~a~~~~~--~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~ 141 (336)
T 2x65_A 76 --N-I-IAEPM--------KKNTAPACFIGTKLAD--DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIV 141 (336)
T ss_dssp --G-E-EEESS--------CCCHHHHHHHHHTTSC--TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred --e-E-EeCCC--------CCCcHHHHHHHHHhhC--CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEee
Confidence 1 1 22211 3799999998876442 2467999999997643 4544 44557666777777776
Q ss_pred ecCcccCcceeEEEeCCC-----CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 241 PMDEKRATAFGLMKIDEE-----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~-----grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+... .+.||++..+++ ++|..|.|||.....+.+ .....+++++|+|+|+++.|.+.+++
T Consensus 142 p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 142 PTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp CCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHHHHHHHH
T ss_pred cccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHHHHHHHH
Confidence 6443 468999988754 799999999987543211 01224799999999999887544443
Q ss_pred hCCC----------CC-ChhhcchHh---------hhhCCceEEEEEecceEEecCCHHHHHHH
Q 009971 316 KFPG----------AN-DFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (521)
Q Consensus 316 ~~~~----------~~-d~~~dil~~---------li~~~~~I~~~~~~g~w~dIgt~edy~~A 359 (521)
..+. .. +|..++++. +++++.++++++++++|.||||+++|+++
T Consensus 207 ~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 207 CEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 2221 01 344566665 45557899999999999999999999999
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=243.34 Aligned_cols=234 Identities=22% Similarity=0.298 Sum_probs=167.8
Q ss_pred cEEEEEEeCCCCCCCCccc-cCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCC
Q 009971 89 SVLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT-~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (521)
+|.+||||||.||||+||| ..+||+|+|++|.+|||+|+++++.++ |+++|+|++++.. ..+.+++..
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--------- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--------- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS---------
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc---------
Confidence 5899999999999999999 689999999998349999999999998 8999999998764 344444332
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-CcceEEEEeCCeeccc--cHHHHHH----HHHhcCCcEEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYRM--DYERFIQ----AHRETDADITVA 238 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~~--dl~~ll~----~h~~~~aditi~ 238 (521)
..+ ++.+ +..||+.++..+.. +... .++.+++++||+++.. ++..+++ .|.+ ++.+|+.
T Consensus 73 ---~~~-i~e~--------~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~ 138 (337)
T 2cu2_A 73 ---IRL-LLEP--------LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALG 138 (337)
T ss_dssp ---SEE-EEES--------SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEE
T ss_pred ---Cce-EecC--------CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEe
Confidence 111 2221 13789999998877 5422 3578999999997642 3555444 3433 5677777
Q ss_pred EEecCcccCcceeEEEeCCC----CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 239 ALPMDEKRATAFGLMKIDEE----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~----grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+.+.. +++.||++..+++ ++|..|.|||.....+.+ .... +++++|+|+|+++.|.+.++
T Consensus 139 i~p~~--~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g-~~~n~Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 139 LRPTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY-------------IRKG-YVWNGGVFAFAPATMAELFR 202 (337)
T ss_dssp ECCSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH-------------HHTT-CEEEEEEEEECHHHHHHHHH
T ss_pred eccCC--CCCCceEEEECCcccccCeEEEEEeCCChHHHHHH-------------hhcC-CEEEEEEEEEeHHHHHHHHH
Confidence 76654 3468999988765 799999999986543211 0112 69999999999998754554
Q ss_pred hhCCCC---------CChhhcchHh---------hhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 315 DKFPGA---------NDFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 315 ~~~~~~---------~d~~~dil~~---------li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
+..+.. +....+.++. +++++.++++++++++|.||||+++|+++..
T Consensus 203 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 203 RHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 332210 0001233443 4555789999999999999999999999864
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-27 Score=229.65 Aligned_cols=221 Identities=13% Similarity=0.166 Sum_probs=159.6
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++|.|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.++... +.
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~-~~-------- 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK-YG-------- 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH-HC--------
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh-CC--------
Confidence 368999999999999999999999999999986 99999999999999999999999887777554432 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
+.++...+ . ...|++++++.++..++ ++++++||+++..+ +..++ +.++.+++. ..+ .
T Consensus 94 ---~~iv~~~~--~---~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~~~~~t~~---~~~-~ 152 (254)
T 1jyk_A 94 ---VRLVFNDK--Y---ADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TRSTYFSVY---RED-C 152 (254)
T ss_dssp ---CEEEECTT--T---TTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CSEEEEECE---ESS-C
T ss_pred ---cEEEECCC--c---cCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hCCceEEEE---ccc-C
Confidence 23332211 0 13799999998876653 48999999976545 33322 222223322 221 1
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHH---HHHhhhCC---CC
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML---NLLRDKFP---GA 320 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~---~ll~~~~~---~~ 320 (521)
...|+++ +|++|+|+.|.|++. ..++++|+|+|+++.+. +++++... ..
T Consensus 153 ~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~ 207 (254)
T 1jyk_A 153 TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFV 207 (254)
T ss_dssp SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCT
T ss_pred CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCcc
Confidence 2357754 788899999998653 23889999999987433 33332221 12
Q ss_pred CChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhccc
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~ 365 (521)
..+.++++..+++ +.+++++.++ ++|.+|||++||.+|++.+..
T Consensus 208 e~~~~d~~~~l~~-~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 208 DLYWDNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp TCCTTHHHHTTGG-GCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHh-hCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 3445777777766 7899999998 799999999999999987653
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=222.98 Aligned_cols=240 Identities=15% Similarity=0.174 Sum_probs=173.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|++.|||||+|.|||| | ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 1 M~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~-~g-------- 62 (252)
T 3oam_A 1 MSFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA-FG-------- 62 (252)
T ss_dssp CCEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH-cC--------
Confidence 3689999999999999 3 7999999987 99999999999999999999994 5788888875 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
++++... ++++.||++ +..++..++....+.||+++||. ++ ..++.++++.|.++++++++++.+.++
T Consensus 63 ---~~v~~~~-----~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~- 132 (252)
T 3oam_A 63 ---GVVCMTS-----PNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIED- 132 (252)
T ss_dssp ---CEEEECC-----TTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECC-
T ss_pred ---CEEEEcC-----CCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCC-
Confidence 2232211 123488887 56666665311257899999999 44 467999999998888899999888764
Q ss_pred cCcce-----eEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 246 RATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 246 ~~~~~-----g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
+..| +.+..|++|+++.|.++|..+...+..-.. .....+++.++|+|+|++++|..+... .+..
T Consensus 133 -~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~--------~~~~~~~~~n~GiY~~~~~~l~~~~~~-~~~~ 202 (252)
T 3oam_A 133 -EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKAD--------KAIVQPLLRHIGIYAYRAGFINTYLDW-QPSQ 202 (252)
T ss_dssp -HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSS--------CCCCSCEEEEEEEEEEETTHHHHHHHS-CCCH
T ss_pred -HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccc--------ccccccceEEEEEEEcCHHHHHHHHcC-CCCc
Confidence 3445 889999999999999987543211100000 000125799999999999999876653 2211
Q ss_pred CChhhcchHh--hhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccC
Q 009971 321 NDFGSEVIPG--ATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 321 ~d~~~dil~~--li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~ 366 (521)
.+. .+.|.+ ++++|.+|.++..+ .+|.||||++||.+|+..+..+
T Consensus 203 ~e~-~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 203 LEK-IECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccc-cchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 111 123332 34558999998775 4689999999999999877654
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=209.90 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=163.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|++.|||||+|.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~-~g-------- 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED-FG-------- 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-cC--------
Confidence 56899999999999995 7999999987 99999999999999999999985 4777777764 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~ 244 (521)
++++.. .++++.|++. +..++..++....+.|+++.||. +++ .++.++++.|.+. ++++++++.+..+
T Consensus 70 ---~~v~~~-----~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~ 140 (256)
T 3tqd_A 70 ---AVVCMT-----SSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITE 140 (256)
T ss_dssp ---CEEEEC-----CTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCC
T ss_pred ---CeEEEe-----CCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCC
Confidence 223221 1234578865 77787777421357899999999 554 5699999999875 5677777777643
Q ss_pred ----ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 245 ----KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 245 ----~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
.++..++ |..|++|+++.|.++|......... .........+++...|+|.|++++|..+... .+.
T Consensus 141 ~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l-~~s- 210 (256)
T 3tqd_A 141 VDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLSW-DAC- 210 (256)
T ss_dssp HHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-CCC-
T ss_pred HHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHhC-CCC-
Confidence 1233343 5678899999999998643211000 0000001235799999999999999866542 221
Q ss_pred CChh-hcchHh--hhhCCceEEEEEecce-EEecCCHHHHHHHhhh
Q 009971 321 NDFG-SEVIPG--ATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLG 362 (521)
Q Consensus 321 ~d~~-~dil~~--li~~~~~I~~~~~~g~-w~dIgt~edy~~An~~ 362 (521)
.++ .+-|.+ ++++|++|+++.++++ |.+||||+||.+|+..
T Consensus 211 -~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 211 -PAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp -HHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred -cccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 122 233332 3566999999999875 8999999999999864
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=209.39 Aligned_cols=239 Identities=16% Similarity=0.167 Sum_probs=167.9
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
..|++.|||||||.||||. +|+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 15 ~~M~~~aIIlA~G~stRlp------~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~-~g------ 78 (264)
T 3k8d_A 15 SHMSFVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA-AG------ 78 (264)
T ss_dssp ---CCEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT------
T ss_pred CCCceEEEEEcCCCCCCCC------CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-cC------
Confidence 3457899999999999993 5999999987 99999999999999999999984 5677777764 21
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
++++.. .++|+.||+. +..++..++....+.++++.||. ++ ..++.++++.+.+.++++++++.+..
T Consensus 79 -----~~v~~~-----~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~ 147 (264)
T 3k8d_A 79 -----GEVCMT-----RADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 147 (264)
T ss_dssp -----CEEEEC-----CTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECC
T ss_pred -----CEEEEe-----cCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcC
Confidence 223221 1234578866 77777776422357899999999 44 46699999999888889999988875
Q ss_pred cc----cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC
Q 009971 244 EK----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (521)
Q Consensus 244 ~~----~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~ 319 (521)
+. ++..+ .+..|++|+++.|.+||..........+ +.....+++.++|+|.|++++|..+... .+
T Consensus 148 d~~~~~~p~~v-kVv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~- 216 (264)
T 3k8d_A 148 NAEEAFNPNAV-KVVLDAEGYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRYVNW-QP- 216 (264)
T ss_dssp SHHHHTCTTSC-EEEECTTSBEEEEESSCCSCCHHHHHHC--------SSCCCSCCEEECSEEEEEHHHHHHHHHS-CC-
T ss_pred CHHHccCCCce-EEEECCCCeEEEEecCCCCCCCcccccc--------ccccCCcceEEEEEEEECHHHHHHHHhC-CC-
Confidence 42 12222 3567889999999999753211100000 0000124799999999999999876552 12
Q ss_pred CCChh-hcchHh--hhhCCceEEEEEec-ceEEecCCHHHHHHHhhhc
Q 009971 320 ANDFG-SEVIPG--ATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 320 ~~d~~-~dil~~--li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~l 363 (521)
..++ .+.|.+ ++++|++|+++... .+|.+||||+||..|+..+
T Consensus 217 -~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 217 -SPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp -CHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred -ChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 1122 233332 34669999999765 4689999999999998654
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=195.02 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=155.5
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+.
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~----------- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL----------- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----------
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----------
Confidence 5899999999999997 8999999987 9999999999999 9999999976 6677776541
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC-cc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD-EK 245 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~-~~ 245 (521)
+.++... +.+..|++.++ .++..+ ..+.+++++||+ +++ .++.++++.|.+.++.+++...... ..
T Consensus 61 --~~~~~~~-----~~~~~g~~~~~-~~~~~~---~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (234)
T 2y6p_A 61 --CEVFLTP-----SDLPSGSDRVL-YVVRDL---DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYE 129 (234)
T ss_dssp --SEEEECC-----TTCCSHHHHHH-HHHTTC---CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGG
T ss_pred --eEEEECC-----cccccchHHHH-HHHHhC---CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhc
Confidence 1222111 11236777755 444333 247899999999 887 6799999999887744444443211 11
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
++..++ +..|++|++..|.+||....... ...+.+.++|+|+|+++.|..+... .+...+. .
T Consensus 130 ~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~-~ 191 (234)
T 2y6p_A 130 RPEDVK-VVLDREGYALYFSRSPIPYFRKN---------------DTFYPLKHVGIYGFRKETLMEFGAM-PPSKLEQ-I 191 (234)
T ss_dssp CTTSCE-EEECTTSBEEEEESSCCSCCSSC---------------CSSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHH-H
T ss_pred CCCceE-EEEcCCCCEeeeecCCCCccccc---------------ccceeeEEEEEEEcCHHHHHHHHhC-CCCccch-h
Confidence 233344 34577899999999874310000 0002478999999999998766542 1111111 1
Q ss_pred cchH--hhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 326 EVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~--~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
+.+. .++..+.+++++..+++|.||+|++||..|+..+
T Consensus 192 d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 192 EGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 1121 2344488999999999999999999999998765
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=195.32 Aligned_cols=238 Identities=13% Similarity=0.113 Sum_probs=166.8
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHH-HHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPV-SNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l-~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
+.|||||+|.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+++ .+.+.+++.+ +.
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~-~g--------- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATD--DERIAEICRA-EG--------- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHT-TT---------
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHH-cC---------
Confidence 579999999999997 4999999997 9999999 9999999999999995 4677777654 11
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc-
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE- 244 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~- 244 (521)
++++... +++..|+ +++..++..++....+.+|++.||. +.+ ..+.++++.|.+. +.+++.++.+..+
T Consensus 63 --~~v~~~~-----~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~ 134 (253)
T 4fcu_A 63 --VDVVLTS-----ADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHAL 134 (253)
T ss_dssp --CCEEECC-----TTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCH
T ss_pred --CeEEEeC-----CCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCH
Confidence 1222111 1223677 5788888777532357899999999 665 5699999999876 3455444444321
Q ss_pred ---ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 245 ---~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
.++..+ .+..|++|+++.|.++|..........+.+ .....++.++|+|+|++++|..+... + ..
T Consensus 135 ~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~~~--------~~~~~~~~~~GiY~f~~~~l~~~~~~--~-~~ 202 (253)
T 4fcu_A 135 DEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRDEP--------TLHTQAFRHLGLYAYRVSLLQEYVTW--E-MG 202 (253)
T ss_dssp HHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSSSC--------CCCSCCEEEEEEEEEEHHHHHHHTTS--C-CC
T ss_pred HHccCCCcc-EEEECCCCeEEEecCCCCCCCCCccccccc--------ccccceeEEEEEEEeCHHHHHHHHhC--C-CC
Confidence 234444 456788999999999875432111000000 00124688999999999999876532 2 22
Q ss_pred Chh-hcchHhh--hhCCceEEEEEecce-EEecCCHHHHHHHhhhcccC
Q 009971 322 DFG-SEVIPGA--TSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 322 d~~-~dil~~l--i~~~~~I~~~~~~g~-w~dIgt~edy~~An~~ll~~ 366 (521)
.++ .|.|.++ +++|++|+++..+++ |.+||||+||..|+..+..|
T Consensus 203 ~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 203 KLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred cccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 232 3445543 466999999999999 99999999999999877654
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=194.68 Aligned_cols=229 Identities=16% Similarity=0.263 Sum_probs=160.1
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCC-ceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI-SKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+ +.
T Consensus 1 m~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~~------- 63 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-FG------- 63 (245)
T ss_dssp CCEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-TT-------
T ss_pred CCeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH-cC-------
Confidence 3589999999999999 5 8999999987 999999999999996 999999975 677777765 11
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhc-CCcEEEEEEecC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~ 243 (521)
++++... +.+..|+++.+ .++..++ .+.+++++||+ +.+ .++.++++.|.+. ++++++++.+.+
T Consensus 64 ----~~~~~~~-----~~~~~g~~~~~-~~~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 130 (245)
T 1h7e_A 64 ----GKAIMTR-----NDHESGTDRLV-EVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAIS 130 (245)
T ss_dssp ----CEEEECC-----SCCSSHHHHHH-HHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEEC
T ss_pred ----CeEEeCC-----CccCCcHHHHH-HHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Confidence 2333211 12336775544 4444442 47899999999 444 5699999999887 788877776652
Q ss_pred ccc--CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 244 EKR--ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 244 ~~~--~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
... ...+..+..+++|++..|.+++....... ...+.+.++|+|+|+++.+..++. .+ ..
T Consensus 131 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~~--~~-~~ 192 (245)
T 1h7e_A 131 AAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYSQ--LP-ES 192 (245)
T ss_dssp HHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGGG--SC-CC
T ss_pred HHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHHh--CC-CC
Confidence 111 01121223367889999987643211000 001247899999999998866552 22 22
Q ss_pred Ch-hhcchHhhh--hCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 322 DF-GSEVIPGAT--SIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 322 d~-~~dil~~li--~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
++ .++.++.+. +.|.+++++..+++|+||||++||..|+..+.
T Consensus 193 ~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 193 MPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 22 356665543 55889999999999999999999999987654
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=191.93 Aligned_cols=246 Identities=15% Similarity=0.141 Sum_probs=163.6
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
++.|||||||.|+||. +|+|+|++|+ |||+|++++|.++++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~~--------- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-FG--------- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-TT---------
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-cC---------
Confidence 5799999999999995 3999999987 999999999999999999999974 567777654 11
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
++++... +.+..|++ .+..++..++....+.+|+++||+ +. ..++.++++.|.+.++++++++.+..+..
T Consensus 63 --~~~~~~~-----~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (262)
T 1vic_A 63 --AEVCMTS-----VNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAE 134 (262)
T ss_dssp --CEEEECC-----CSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHH
T ss_pred --CEEEECC-----ccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHH
Confidence 2232211 12336675 465666555422347899999999 44 46699999999888888888877765320
Q ss_pred ---CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 247 ---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 247 ---~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
...+..+..+++|+++.|.+++..........+ +..... ..-..+..++|+|+|+++++..+... .+...+.
T Consensus 135 ~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~---~~~~~~-~~p~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~ 209 (262)
T 1vic_A 135 ELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL---QDVQKV-QLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLEN 209 (262)
T ss_dssp HHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC---SCGGGC-CCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHH
T ss_pred HhcCCCceEEEECCCCCEeeeecCCCCcCCcccccc---cccccc-ccccceEEEEEEEEeeHHHHHHHHhC-CCCchhh
Confidence 123444555778999999887532100000000 000000 00012589999999999988755432 1111111
Q ss_pred hhcchH--hhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccCC
Q 009971 324 GSEVIP--GATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKP 367 (521)
Q Consensus 324 ~~dil~--~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~~ 367 (521)
.+++. .+++.+.+++++..+ ++|+||+||+||..|+..+....
T Consensus 210 -~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 210 -LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp -HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred -hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 11121 245458899999998 79999999999999998876554
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=196.22 Aligned_cols=214 Identities=16% Similarity=0.210 Sum_probs=134.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++.+.+.
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~~------- 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDKG------- 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTSC-------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhcC-------
Confidence 56799999999999999986 9999999986 9999999999999 99999999 777788787644221
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
. .+.++.. +.|..|++++++.++..++ +++++++||+.++.+ +..+++.+ . +++.......
T Consensus 82 -~-~~~~v~~------~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~~~~~l~~~~-----~-~~~~~~~~~~ 143 (232)
T 2xme_A 82 -F-NYKIVRH------DRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQFIEKAVRGE-----G-VIADREPRFV 143 (232)
T ss_dssp -C-CEEEEEC------SCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHHHHHHHTTCC-----E-EEEESSCSSS
T ss_pred -C-cEEEEEC------CCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHHHHHHHHhCC-----C-cEEEcccccc
Confidence 0 1344421 2233799999999887664 579999999976655 45554421 1 2222111111
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
+..+++.+..+ +|++..+.+++.. .+..++|+|+|++++|. .+.+... ..++
T Consensus 144 ~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~-~g~~-- 195 (232)
T 2xme_A 144 DIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRD-REEI-- 195 (232)
T ss_dssp CTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTT-SSCC--
T ss_pred CCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHh-cChh--
Confidence 23456666665 6899999877642 24788999999999987 4443321 1111
Q ss_pred cchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhh
Q 009971 326 EVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ 362 (521)
-+..+++ ..++..+.++ ++|.||+||+||.+|+..
T Consensus 196 -~l~~ll~-~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 196 -PLSEIVK-LARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp -CHHHHHH-HHTCBEEECCSCCEEEEECC---------
T ss_pred -HHHHHHH-cCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 1333443 2246666765 689999999999988754
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=188.61 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=157.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHH-HHHHHHHhhhccCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSAS-LNRHLSRAYASNMGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~ 164 (521)
|+++.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++.... +.+.+.+ +.+.
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~~~--- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKK-YISD--- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHH-HCCC---
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHH-hCCC---
Confidence 4568999999999999986 5789999999987 99999999999987 99999999876643 4444443 2211
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc----CcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEE
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVA 238 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~----~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~ 238 (521)
..+.++.. + .+..++++.++..+.+. ..+.+|+++||. +.. ..+.++++.+.+.++.++
T Consensus 74 ----~~~~~~~~-~--------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~-- 138 (246)
T 3f1c_A 74 ----DRIVVIEG-G--------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDT-- 138 (246)
T ss_dssp ----TTEEEEEC-C--------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEE--
T ss_pred ----CCEEEECC-C--------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEE--
Confidence 12444321 1 46788999999888641 257899999999 544 569999999988765443
Q ss_pred EEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC
Q 009971 239 ALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP 318 (521)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~ 318 (521)
+.+..+ .++..++++.+..+.+++.. +.--..++|+.+.|.+.++....
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHH
Confidence 344322 23444445566655555321 12224569998888777764211
Q ss_pred CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCC
Q 009971 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPD 370 (521)
Q Consensus 319 ~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~ 370 (521)
....+.+|.+..+...|.++..++.+.+|++|+|++||..|+..+..+..++
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~~~~ 239 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERIANE 239 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC---
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcccccC
Confidence 1122457788888777999999999999999999999999998877655433
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=182.05 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=143.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (521)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++.+ +...+ .
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~----~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-YLPLY----K 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-HCGGG----G
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-ccccc----c
Confidence 7999999999999997 6789999999987 9999999999998 5999999999877 556666654 22101 0
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhh--c--CcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEe
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE--H--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALP 241 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~--~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~ 241 (521)
..+.... .. .|+.++++.++..+.. . ..+.+++++||+ ++. .++.++++.|.+.++ ++++.+
T Consensus 75 -~~~~~~~-----~~----~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~ 142 (236)
T 2vsh_A 75 -ERIIITK-----GG----ADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVE 142 (236)
T ss_dssp -GGEEEEE-----CC----SSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEE
T ss_pred -CceEEEC-----CC----CchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEe
Confidence 0122211 11 5788999999887742 1 236799999999 555 579999999987654 244444
Q ss_pred cCcccCcceeEEEeCCCC-CeEEeeeCCChhhhhhcccccccccCCchhhccCCceee-EEEEEEeHHHHHHHHhhhCCC
Q 009971 242 MDEKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS-MGIYVISKDVMLNLLRDKFPG 319 (521)
Q Consensus 242 ~~~~~~~~~g~v~~d~~g-rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~GIyifs~~vl~~ll~~~~~~ 319 (521)
..+ + +..+++| ++..+.+++. +.. ...|+|+++.+.++++....
T Consensus 143 ~~~--~-----~~~~~~g~~~~~~~~~~~--------------------------~~~~~~p~~f~~~~l~~~~~~~~~- 188 (236)
T 2vsh_A 143 AVD--T-----IVESTNGQFITDIPNRAH--------------------------LYQGQTPQTFRCKDFMDLYGSLSD- 188 (236)
T ss_dssp CCS--C-----EEECSSSSBCCBCCCGGG--------------------------EEEEEEEEEEEHHHHHHHHHTCCH-
T ss_pred ccc--c-----EEEeCCCCeeeeecChHH--------------------------heeecCCcEecHHHHHHHHHHHHh-
Confidence 332 2 2224567 7777766531 211 23789999888766653211
Q ss_pred CCCh-hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 320 ANDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 320 ~~d~-~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
...+ ..+.+..+...+.++..+..+++|.||+||+||..|+..+.
T Consensus 189 ~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 189 EEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred cCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 1111 23444555555778999998889999999999999987553
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=178.07 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=144.8
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+++.|||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++..+.+.+++...+.
T Consensus 2 ~~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~------ 71 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESID------ 71 (228)
T ss_dssp TTCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSS------
T ss_pred CcceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCC------
Confidence 457999999999999998 3579999999987 9999999999998 8999999999887666665543211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. .+.++.. + .|..++++.++..++. ..+.++++.||. ++. .++..+++.|.+.++ ++++.+..
T Consensus 72 --~-~v~~~~~-----~----~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~ 136 (228)
T 2yc3_A 72 --V-DLSFAIP-----G----KERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAK 136 (228)
T ss_dssp --S-EEEEECC-----C----SSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred --C-cEEEECC-----C----CCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEecc
Confidence 0 1333321 1 5788999999877753 246789999998 555 569999999877654 44444432
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
+ .+..+|+++.+..+.+++. ..... ..|+|+++.+.+.++..... ..+
T Consensus 137 ~------~~~~~~~~~~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~-~~~ 184 (228)
T 2yc3_A 137 A------TIKEVNSDSLVVKTLDRKT------------------------LWEMQ-TPQVIKPELLKKGFELVKSE-GLE 184 (228)
T ss_dssp S------CCCCBCTTSCBCCCCSCCC------------------------CEEEE-EEEEECHHHHHHHHHHHHHH-TCC
T ss_pred c------eEEEEcCCCceEEecCccc------------------------eEEEe-CCcEEEHHHHHHHHHHHHhc-CCC
Confidence 2 1112344455543322211 11333 48999987766555421111 122
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
..+.+..+.+.+.++..+..+..|+||+||+||..|+..+.
T Consensus 185 ~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 185 VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp CCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred cccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 45666666666888876666667999999999999987654
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=171.85 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=136.7
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
++|.|||||||.|+||++ ..||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.+ +..
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-AFP------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-HCT------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-cCC------
Confidence 468999999999999996 579999999986 99999999999985 99999999987766666 543 110
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc----CcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEE
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~----~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~ 240 (521)
..+.++. . ..|++++++.++..+... ..+.+++++||. +.+ ..+.++++.|.+.+... +++.
T Consensus 73 --~~i~~~~-----~----~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~-~~~~ 140 (231)
T 1vgw_A 73 --QVRVWKN-----G----GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-ILAV 140 (231)
T ss_dssp --TSEEECC-----C----CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EEEE
T ss_pred --CceEEEc-----C----CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeE-EEEe
Confidence 1134331 1 168999999998777421 247899999998 555 45999999887654233 3344
Q ss_pred ecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
+..+ ... .. ++|++....++ . ..+.....|+|+++.+..+++.....
T Consensus 141 ~~~~--~~~----~~-~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~~l~~~~~~~~~~- 187 (231)
T 1vgw_A 141 PVAD--TLK----RA-ESGQISATVDR---S----------------------GLWQAQTPQLFQAGLLHRALAAENLG- 187 (231)
T ss_dssp ECCS--CEE----EE-SSSBEEEEECC---T----------------------TEEEEEEEEEEEHHHHHHHHHC-----
T ss_pred eccc--ceE----Ee-CCCceEecCCh---H----------------------HheeeeCCcEecHHHHHHHHHHHhhc-
Confidence 4322 111 12 34555543222 1 01222348999998887766532211
Q ss_pred CChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
. .++....+...+.++..+..++.|+|||||+||..|+..+
T Consensus 188 g--~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 188 G--ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp C--CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred C--CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 1 1222333333367888888778899999999999998654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=173.99 Aligned_cols=216 Identities=17% Similarity=0.108 Sum_probs=151.6
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChH-HHHHHHHHhhhccCCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSA-SLNRHLSRAYASNMGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~ 165 (521)
|+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++... .+.+++..
T Consensus 1 m~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~--------- 67 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGG--------- 67 (223)
T ss_dssp -CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCB---------
T ss_pred CceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhcc---------
Confidence 35899999999999998 4689999999986 99999999999988 9999999987753 34443320
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
..+.++... .+.+++++.++..++ ..+.+++++||+ +.+ .++..+++.|. .+.+.++.+.+..
T Consensus 68 ---~~v~~~~~~---------~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~ 132 (223)
T 2xwl_A 68 ---EDSVIVSGG---------VDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPA 132 (223)
T ss_dssp ---TTEEEEECC---------SSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCS
T ss_pred ---CCeEEEcCC---------CCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecc
Confidence 013333211 457889999987762 246789999999 555 46999999883 3445666555543
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
+ +..+ .|++|++..+.+++.. ......|+|+++.+..+++... .++
T Consensus 133 d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~~~ 178 (223)
T 2xwl_A 133 D--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---AGG 178 (223)
T ss_dssp S--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---SCC
T ss_pred c--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---CCC
Confidence 2 2222 3677899888776421 1112357899988776654321 223
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
..+....+...+.++..+..+++|+|||||+||..|+..+..
T Consensus 179 ~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 179 VTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp CCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 344455555556789999988899999999999999876543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-21 Score=197.15 Aligned_cols=262 Identities=17% Similarity=0.155 Sum_probs=146.2
Q ss_pred eEEEEeCCeeccc--cHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCC--CCCeEEeeeCCChhhhhhccccccc
Q 009971 207 EFLVLAGDHLYRM--DYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE--EGRIIEFSEKPKGEQLKAMKVDTTI 282 (521)
Q Consensus 207 ~~Lvl~gD~l~~~--dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~--~grV~~i~ekp~~~~~~~~~~~~~~ 282 (521)
.=|+-.+|++|++ ||.++++.|. .++.. .+++..||+..+++ +++| .|.|||+....
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------- 72 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------- 72 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH---------
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh---------
Confidence 3467789999997 8999999984 35543 23466789888875 4566 99999985421
Q ss_pred ccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhhhhCCceEEEEEecceEEec--CCHHHHHHHh
Q 009971 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI--GTIEAFYNAN 360 (521)
Q Consensus 283 ~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~li~~~~~I~~~~~~g~w~dI--gt~edy~~An 360 (521)
..+.++|+|+|+++++.++. +| .++++ ++..+ +.++|....+|++. .++.
T Consensus 73 -----------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~-~~~a~~~~~~~~~~~i~~~~------ 124 (374)
T 2iu8_A 73 -----------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSES-PSLVFQKCLELFITPVDSGF------ 124 (374)
T ss_dssp -----------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSC-HHHHHHHHHTTTSCCCCCSC------
T ss_pred -----------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCC-HHHHHHHHHHHhcccccccc------
Confidence 13678999999998764211 12 45555 54422 33334344445543 2211
Q ss_pred hhcccCCCCCccccccCCCcccCCCCcCCCceee-cccc------c-ceEECCCcEEce-eEEe-eeEECCCCEECCCCE
Q 009971 361 LGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADV------T-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAI 430 (521)
Q Consensus 361 ~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i------~-~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~ 430 (521)
...+... ++++++.|...+.+.|++.+. ++.| . +++|+++|.|++ |.|. +++|+.++.||++|.
T Consensus 125 -----~~i~~~~-~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 198 (374)
T 2iu8_A 125 -----PGIHPTA-VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVI 198 (374)
T ss_dssp -----CSBCTTC-EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCE
T ss_pred -----CccCCCC-EECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCE
Confidence 1112223 666777777777666666654 2222 1 233334444443 4443 344444444444444
Q ss_pred EcceEEECCccccc---cc--------cccccccCCC------c-------ceeeCCCCEEe-eeEECCCCEECCCcEEe
Q 009971 431 IEDTLLMGADYYET---DA--------DRRFLAAKGS------V-------PIGIGKNSHIK-RAIIDKNARIGDNVKIV 485 (521)
Q Consensus 431 I~~s~i~~~~~~e~---~~--------~~~~~~~~~~------~-------~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~ 485 (521)
|+....++.+.+.. +. ...+.||+++ . .+.||+++.|. .+.|++||+||++++|.
T Consensus 199 I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~ 278 (374)
T 2iu8_A 199 IQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIV 278 (374)
T ss_dssp ECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEc
Confidence 44333222211000 00 0123333333 1 12344444444 46778899999999999
Q ss_pred CCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 486 NSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 486 ~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.+.+...+++|++|+|+.+. ++||++|+|++||+|
T Consensus 279 ~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 279 AQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp TTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred cCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 999998888999999998873 678888888888764
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=170.98 Aligned_cols=217 Identities=15% Similarity=0.128 Sum_probs=147.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|+++ .+.+.+++.+ +.
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~--~~~i~~~~~~-~~------- 65 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKN-FG------- 65 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEES--CHHHHHHHHH-TT-------
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECC--CHHHHHHHHH-cC-------
Confidence 46789999999999998 7999999987 99999999999988 899999996 3556666654 21
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
++++.... .-..+..|++++++.++..++. ..+.+++++||+ +.. .++..+++.|.+.++++++.+.+..+
T Consensus 66 ----~~~~~~~~--~~~~~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 1ezi_A 66 ----VEVVLRPA--ELASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138 (228)
T ss_dssp ----CEEEECCC--------CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS
T ss_pred ----CEEEeCch--HHcCCCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 12221100 0000126789999999987741 247899999999 444 56999999887777777777776543
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCCh-hhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKG-EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
. +..+ ..+|++|++..+.+.... .... . ....+..+.|+|+++++.+.+.++ +
T Consensus 139 ~-p~~~--~~~~~~g~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~giy~~~~~~l~~~~~--------~ 192 (228)
T 1ezi_A 139 H-PLKT--LLQINNGEYAPMRHLSDLEQPRQ--------------Q-LPQAFRPNGAIYINDTASLIANNC--------F 192 (228)
T ss_dssp C-TTSC--EEECC--CEEESSCHHHHTCCGG--------------G-SCCEEEEEEEEEEEEHHHHHHHTS--------S
T ss_pred C-ccee--eEEcCCCcEeeccccccccCCcc--------------c-CchhheeeeEEEEEeHHHHhhCCc--------c
Confidence 1 2223 333777899888652110 0000 0 001235678999999987653210 1
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll 364 (521)
.+.++..+..+ ..|.||+||+||..|+..+.
T Consensus 193 ----------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 193 ----------FIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp ----------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred ----------cCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 15677778776 57999999999999987654
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-20 Score=179.43 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=140.3
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++.+.++++ +|+|++.. +.+.+++
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------------- 62 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------------- 62 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC--------------
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc--------------
Confidence 58999999999 88777666689999999986 999999999999998 88887643 3322211
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
.+++ . +..|++++++.++..++ ++|++++||+ +...++..+++ | +.++++++...+.+..
T Consensus 63 -~~~~--~--------~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~- 124 (232)
T 2dpw_A 63 -ALTL--P--------DRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAV- 124 (232)
T ss_dssp -SEEE--C--------CCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHH-
T ss_pred -CeEe--c--------CCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccch-
Confidence 1333 1 13799999999987664 6899999999 44566999998 7 5667777776653211
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh---h--CCC--
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---K--FPG-- 319 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~--~~~-- 319 (521)
...|+.+ .++|+.+.||| .+++|+|+|+++++..+.+. . ...
T Consensus 125 ~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P 173 (232)
T 2dpw_A 125 EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVALRKRP 173 (232)
T ss_dssp HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCH
T ss_pred hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCH
Confidence 1233321 24577766653 57899999999887544321 0 000
Q ss_pred -----------------CCChhhcchHhhhh-CCceEEEEEec--ceEEecCCHHHHH
Q 009971 320 -----------------ANDFGSEVIPGATS-IGMRVQAYLYD--GYWEDIGTIEAFY 357 (521)
Q Consensus 320 -----------------~~d~~~dil~~li~-~~~~I~~~~~~--g~w~dIgt~edy~ 357 (521)
.....+++++.+.. .+.++..+.++ +.|.|||||+||.
T Consensus 174 ~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 174 LALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 12234677765542 36789999884 5799999999984
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=164.57 Aligned_cols=222 Identities=12% Similarity=0.150 Sum_probs=143.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.. +.
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~------ 72 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL-AN------ 72 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG-GG------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh-cC------
Confidence 467999999999999998 4579999999986 99999999999887 89999999876655544 322 11
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
...+.++.. + .|..++++.++..+++ .+.+++++||+ +.+. .+..+++.+.+.++.. +.+.+..
T Consensus 73 --~~~v~~~~~-----~----~g~~~~i~~al~~~~~--~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~ 138 (236)
T 1i52_A 73 --HPQITVVDG-----G----DERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVR 138 (236)
T ss_dssp --CTTEEEEEC-----C----SSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECC
T ss_pred --CCCEEEECC-----C----CCHHHHHHHHHHhcCC--CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecc
Confidence 112433321 1 4788999998877642 47899999999 5554 5889998876655333 3333322
Q ss_pred cccCcceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
+ . + ...+++ |++....+.. .-+..-+.++|+++.+..+++........
T Consensus 139 ~--~--~--~~~~~~~~~i~~~~~~~-------------------------~i~~~~~p~~f~~~~l~~~~~~~~~~g~~ 187 (236)
T 1i52_A 139 D--T--M--KRAEPGKNAIAHTVDRN-------------------------GLWHALTPQFFPRELLHDCLTRALNEGAT 187 (236)
T ss_dssp S--C--E--EEECTTSSSEEEEECCT-------------------------TCEEEEEEEEEEHHHHHHHHHHHHHTTCC
T ss_pred c--c--E--EEEcCCCCceeeccChH-------------------------hheeeeCCceecHHHHHHHHHHHHhcCCC
Confidence 1 1 1 112444 4554332110 01222256788887776665432111111
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
.++....+...+.++..+..++.|+||+||+||..|+..+..+
T Consensus 188 -~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 188 -ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp -CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred -cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 2222333333467888888888899999999999998876544
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=160.33 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=137.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.+ +.
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~--~~~~i~~~~~~-~g------- 64 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQ-FG------- 64 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TT-------
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEEC--ChHHHHHHHHH-cC-------
Confidence 46899999999999995 4999999987 99999999999988 69999999 35667777654 11
Q ss_pred CCCcEEEee-cccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 167 NEGFVEVLA-AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~-~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
++++. ......+ ..+..+++..++..+. ..+.+++++||. +.+ .++..+++.|.+.+++.++.+.+..
T Consensus 65 ----~~~~~~~~~~~~~---~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~ 135 (229)
T 1qwj_A 65 ----AQVHRRSSETSKD---SSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRH 135 (229)
T ss_dssp ----CEEEECCGGGSST---TCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEEC
T ss_pred ----CEEEeChhhhcCC---CCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeecc
Confidence 22221 1100001 1344588888887663 247899999999 554 5699999999888777655544322
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
++..+++ .| + +..|.+++......+ ..++ .....+..++|+|+|+++.| +.
T Consensus 136 --~p~~~~v--~~--~-~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~n~giY~~~~~~l---~~--------- 186 (229)
T 1qwj_A 136 --QFRWSEI--QK--G-VREVTEPLNLNPAKR---------PRRQ-DWDGELYENGSFYFAKRHLI---EM--------- 186 (229)
T ss_dssp --CCEECCC--CS--S-TTCCCCBSSSBTTBC---------CCTT-TSCCEEEEEEEEEEEEHHHH---HT---------
T ss_pred --ChhHhhc--cc--c-ccccccccccccccc---------cCCC-CCCceEEEeeEEEEEEHHHh---cc---------
Confidence 2333322 22 2 111221110000000 0000 00012477999999999877 11
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~ 365 (521)
.+. .+..+..+..+ ++|.||||++||..|+..+..
T Consensus 187 ------~~~-~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 ------GYL-QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ------TCS-SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ------ccc-cCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 111 25566443555 689999999999999886643
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=154.90 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=127.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++|.+||||||.|+||+ .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+ +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------- 67 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL-D--------- 67 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC-T---------
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc-C---------
Confidence 46899999999999995 79999999986 99999999999999999999999887777666543 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+ ++++.. +.|..|++++++.++..+.. ..+.+++++||+ +.+ .++.++++. +.++++++...
T Consensus 68 -~-~~~~~~------~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~----- 131 (197)
T 2wee_A 68 -G-TDVVVV------EDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY----- 131 (197)
T ss_dssp -T-SEEEEC------C----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----
T ss_pred -C-CEEEEC------CCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 1 233321 12337999999999877631 247899999999 554 558888887 44444432211
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
+ |+ +. .-++|+++.+..+.. .. .+.
T Consensus 132 ----------~--g~-------~~------------------------------~P~~~~~~~l~~l~~--~~--~~~-- 156 (197)
T 2wee_A 132 ----------A--DG-------VG------------------------------HPFWFSRTVFGELAR--LH--GDK-- 156 (197)
T ss_dssp ----------T--TE-------EE------------------------------EEEEEEGGGHHHHHT--CC--STT--
T ss_pred ----------C--CC-------cC------------------------------CCEEECHHHHHHHHh--CC--CCh--
Confidence 1 11 00 002677777765542 21 111
Q ss_pred cchHhhhh-CCceEEEEEec-ceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATS-IGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~-~~~~I~~~~~~-g~w~dIgt~edy~~An~~l 363 (521)
-+..+++ .+.++..+..+ +.|.||+||+||..++..+
T Consensus 157 -~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 157 -GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp -HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred -hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 1233333 24568877774 5899999999999887543
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=153.35 Aligned_cols=213 Identities=16% Similarity=0.234 Sum_probs=137.9
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHH-HHHHHHhhhccCCCCc
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASL-NRHLSRAYASNMGGYK 166 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~~~ 166 (521)
.|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++....+ .+++. +
T Consensus 13 ~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~----~------ 78 (234)
T 1vpa_A 13 MNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF----H------ 78 (234)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC----C------
T ss_pred cCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc----c------
Confidence 5899999999999998 3579999999987 99999999999988 999999998765432 22211 0
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.. .+... . .+ .+..++++.++..+++...+.+++++||. +.+ ..+..+++.+.+.++ .+.+.+..+
T Consensus 79 ~~-~~~~~---~--gg----~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~~~~~ 146 (234)
T 1vpa_A 79 EK-VLGIV---E--GG----DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 146 (234)
T ss_dssp TT-EEEEE---E--CC----SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred CC-ceEEe---C--CC----CcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEecCC
Confidence 11 12111 0 00 23778899988777431235788899999 655 459999998876543 333333321
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
++..++++| + .+.++.. .+..-..++|+++.+.+++... .+.
T Consensus 147 ------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~-----~~~ 188 (234)
T 1vpa_A 147 ------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENG-----GEW 188 (234)
T ss_dssp ------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTC-----CCC
T ss_pred ------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhc-----CCC
Confidence 122234556 5 5544310 0111234588988887666531 112
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
.+....+...+.++..+..++.|.||+||+||..|+..+..
T Consensus 189 ~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 189 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred CcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 23333333346678777777789999999999999876543
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=151.58 Aligned_cols=217 Identities=19% Similarity=0.185 Sum_probs=153.2
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+++.. .
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~--~------- 73 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH--R------- 73 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG--G-------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC--C-------
Confidence 4899999999999998 3689999999987 99999999999875 999999998766 455555432 0
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-CcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
+.++... .+..++++.++..+++. ..+.+|++.||. +.+. .+..+++.+.+ +.+..+...+..
T Consensus 74 ----v~~v~gg---------~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~ 139 (231)
T 3q80_A 74 ----AMIVAGG---------SNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLS 139 (231)
T ss_dssp ----CEEEECC---------SSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCS
T ss_pred ----eEEEcCC---------CchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEecc
Confidence 2333211 23468999999877532 246899999999 6654 48999998865 245556666654
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC-CCC
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-AND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~d 322 (521)
+ +.. ..+++|+|....+. ... +.+.+ -+.|+.+.|.+.++....+ ...
T Consensus 140 d--t~~----~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~ 188 (231)
T 3q80_A 140 D--TIK----AVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDLPAA 188 (231)
T ss_dssp S--CEE----EECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC-----
T ss_pred C--CEE----EEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhcCCC
Confidence 3 222 24667887766432 111 13344 5899998888777653321 123
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
+.+|....+...|.++..++-+..++.|+||+|+..|+..+
T Consensus 189 ~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 189 EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 45777777777799999888877799999999999998754
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=164.33 Aligned_cols=337 Identities=14% Similarity=0.113 Sum_probs=196.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecC-CCcchhHHHHHHhHhC----CCc-eEEEEec-CChHHHHHHHHHhhh
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNS----NIS-KIYVLTQ-FNSASLNRHLSRAYA 159 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~-G~~pLI~~~l~~l~~~----gi~-~I~Iv~~-~~~~~i~~~l~~~~~ 159 (521)
..++.+||||||.||||+ ...||+|+||+ |+ |||+|+++.+... |+. .++|+++ +..+.+.+||.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 457999999999999998 57999999998 76 9999999999876 533 3666666 777999999987322
Q ss_pred ccCCCCcCCCcEEEeecccC---------------CC---CC-CCCCChHHHHHHH-----HHHhhhcCcceEEEEeCCe
Q 009971 160 SNMGGYKNEGFVEVLAAQQS---------------PE---NP-NWFQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH 215 (521)
Q Consensus 160 ~~~~~~~~~~~v~vl~~~q~---------------~~---~~-~~~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~ 215 (521)
+++ . +.++ .|. +. .. ..+.||++++... ++.+.....++++|++||.
T Consensus 166 fg~------~-i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn 236 (488)
T 2i5k_A 166 NRI------R-IRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN 236 (488)
T ss_dssp SSC------E-EEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB
T ss_pred cCc------e-EEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc
Confidence 221 1 2211 121 00 01 1368999999733 3444333468999999999
Q ss_pred ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCCC--eEEeeeCCChhhhhhcccccccccCCchhhcc
Q 009971 216 LYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (521)
Q Consensus 216 l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~gr--V~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (521)
|.. .|+. ++..|.++++++++.+.+.++. ...||.+..+ +|+ |+++.+.+....... . + ..
T Consensus 237 L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~~-~--------~----~~ 300 (488)
T 2i5k_A 237 LGATVDLK-ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQVRLLEVAQVPKEHIDEF-K--------N----IR 300 (488)
T ss_dssp SSCCCCHH-HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTEEEEECGGGSCTTSHHHH-T--------C----TT
T ss_pred CCCcccHH-HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCcEEEEEeccCCHHHHhhc-c--------c----cc
Confidence 876 5775 6688989999999988865431 2348887664 454 555555554322100 0 0 01
Q ss_pred CCceeeEEEEEEeHHHHHHHHhhhCCCC---------------------CChhhcchHhhhhCCceEEEEEec-ceEEec
Q 009971 293 MPYIASMGIYVISKDVMLNLLRDKFPGA---------------------NDFGSEVIPGATSIGMRVQAYLYD-GYWEDI 350 (521)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~~~~~~---------------------~d~~~dil~~li~~~~~I~~~~~~-g~w~dI 350 (521)
.....++|+|+|+.+.|.+++....... +.|..|+++.+ + +..++.++ ..|.-+
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~-~---~~~~~~V~R~~F~Pv 376 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF-D---GAHGVVVPRSRFLPV 376 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS-S---SCEEEEECGGGCCBC
T ss_pred ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc-c---CceEEEecccccccc
Confidence 1246799999999999988877421100 11222333332 1 23344442 357788
Q ss_pred CCHHHHHHHhhhcccCCCCCccccccCC-CcccCCCCcCCCceeecccccc--eEECCCcEEceeEEeeeEECCCCEECC
Q 009971 351 GTIEAFYNANLGITKKPIPDFRYFYDRS-APIYTQPRYLPPSKMLDADVTD--SVIGEGCVIKNCKIHHSVVGLRSCISE 427 (521)
Q Consensus 351 gt~edy~~An~~ll~~~~~~~~~~~~~~-~~i~~~~~~~~~~~i~~~~i~~--~~Ig~~~~I~~~~I~~s~ig~~~~Ig~ 427 (521)
-+..+++.+...+-...... . ..++. .++.+...+.+. ..++.+ ..+.....|-++ .+-+|--+++.|.
T Consensus 377 Kn~~~ll~~~~~~~~~~~g~-~-~~~~~~~e~~P~v~~~~~----~~~~~~~~~rf~~~p~i~~~--~~l~v~Gdv~fg~ 448 (488)
T 2i5k_A 377 KTCSDLLLVKSDLFRLEHGS-L-KLDPSRFGPNPLIKLGSH----FKKVSGFNARIPHIPKIVEL--DHLTITGNVFLGK 448 (488)
T ss_dssp CSHHHHHHHTSTTEEEETTE-E-EECTTCCSSCCEEEECGG----GSSHHHHHHHCSSCCBCTTE--EEEEEESSEEECT
T ss_pred cCCccHHHHHHHHHHHhcCc-E-eecCCcCCCCCeEEECCc----ccchhhHHhhcCCCcccccc--ceEEEEeeeEEcC
Confidence 88888766665432111000 0 11111 111111111111 111111 111111112211 2335555577778
Q ss_pred CCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 428 GAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 428 ~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
++.+.+.+++.++ +|. ++.|.++++++|.+|..|.+|
T Consensus 449 ~v~l~G~v~i~a~-------------~~~-~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 449 DVTLRGTVIIVCS-------------DGH-KIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp TCEEEEEEEEECC-------------TTC-CEEECTTCEEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEcC-------------CCC-eEEeCCCCEEecceeeccccc
Confidence 8888777766531 122 467888889988887766665
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=148.52 Aligned_cols=188 Identities=16% Similarity=0.194 Sum_probs=130.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------- 67 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL-D--------- 67 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC-T---------
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc-C---------
Confidence 45899999999999997 69999999986 99999999999999999999999877777666543 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+ +.++.. +.+..|++++++.++..++. ..+.+++++||+ +. ..++.++++. +.++++++...
T Consensus 68 -~-~~~~~~------~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~----- 131 (199)
T 2waw_A 68 -G-LDIVLV------DDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY----- 131 (199)
T ss_dssp -T-SEEEEC------CCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----
T ss_pred -C-CEEEEC------CCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 1 233321 11237889999999887731 247899999999 33 4568888887 44555433221
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
+ ++ +. .-++|+++.+..+.. .. .+..
T Consensus 132 ----------~--g~-------~~------------------------------~P~~~~~~~l~~~~~--~~--~~~~- 157 (199)
T 2waw_A 132 ----------A--NG-------IG------------------------------HPFWVSRGVFGDLAE--LH--GDKG- 157 (199)
T ss_dssp ----------T--TE-------EE------------------------------EEEEEEGGGHHHHHT--CS--STTC-
T ss_pred ----------C--Cc-------cc------------------------------CCEEEcHHHHHHHHh--cC--CCHH-
Confidence 1 10 00 012678877775543 11 1111
Q ss_pred cchHhhhh-CCceEEEEEec-ceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATS-IGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~-~~~~I~~~~~~-g~w~dIgt~edy~~An~~l 363 (521)
+..+++ .+.++..+..+ +.|.|||||+||..++..+
T Consensus 158 --~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 158 --VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp --HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred --HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 223333 24578888874 5899999999999988754
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=155.01 Aligned_cols=129 Identities=23% Similarity=0.336 Sum_probs=93.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++++.++++++|+|+++++.+.+.+++.+.+.+. .
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~-------~ 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDY-------K 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTT-------T
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCC-------C
Confidence 5899999999999997 89999999987 9999999999999999999999998889999998754321 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHh-----cCCcEEEEEEec
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRE-----TDADITVAALPM 242 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~-----~~aditi~~~~~ 242 (521)
.+.++... ..|++++++.++..+ .+.+++++||+ +. ..++.++++.|.+ .+.+..+.+.+.
T Consensus 69 ~~~~~~~~--------~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 69 NIVVIDTS--------GKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp EEEE----------------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred CEEEEECC--------CCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 13333211 267778888877655 47899999999 44 4669999999987 556666666553
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-17 Score=156.18 Aligned_cols=208 Identities=13% Similarity=0.016 Sum_probs=128.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++ .+.+ +..
T Consensus 24 M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~---~~~~-~~~----------- 81 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPP---GAEP-PKG----------- 81 (236)
T ss_dssp CCCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECT---TCCC-CTT-----------
T ss_pred CceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCH---HHHH-hhc-----------
Confidence 357799999999999984 3 9999999987 999999999 6689999999975 1111 111
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
..++++.. . .|..++++.++..++ .+.+|+++||+ +++ ..+..+++.+.+.++ .+.+.+..+
T Consensus 82 -~~v~~~~~-----~----~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~- 145 (236)
T 2px7_A 82 -LGAVFLEG-----G----ATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLPVPD- 145 (236)
T ss_dssp -CSCEEEEC-----C----SSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEECCS-
T ss_pred -CCcEEEeC-----C----CchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEecCC-
Confidence 01333321 1 467889999887764 46899999998 555 458999998876543 333333321
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
... ..+ +|++..+.++.. .+... ..++|+++.+.++++....... ...
T Consensus 146 -~~~----~~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~g~-~~~ 193 (236)
T 2px7_A 146 -TLM----APE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAHAYARRKGL-EAS 193 (236)
T ss_dssp -EEE----EEC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHHHHHHHHTC-CCS
T ss_pred -cEE----Eec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHHHHHHhcCC-Cch
Confidence 111 124 678776644211 01222 2567888877655543211111 112
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
+....+...+.++..+..++.|.|||||+||..|+..+..
T Consensus 194 d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 194 DDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp SHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred hHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 3333333336678888888889999999999999876644
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=147.39 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=115.1
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
+|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|++++..+.+.+++. .
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~------------~ 60 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM------------D 60 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT------------T
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc------------C
Confidence 4899999999999998 39999999987 9999999999887 888999877554443322 1
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
+ + ++. ++.|..|++++++.++..+++ .+.+++++||+ +.+. .+.++++.+ +.++++++...
T Consensus 61 ~-~-~v~------~~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~------ 123 (197)
T 3d5n_A 61 Q-I-VIY------NPFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH------ 123 (197)
T ss_dssp S-C-EEE------CTTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE------
T ss_pred C-E-EEE------CCCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe------
Confidence 1 2 221 123447999999999987753 36899999999 6554 488888876 44555433221
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhc
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~d 326 (521)
+ |+ +.. + .+|+++.+..+.. .... .+
T Consensus 124 ---------~--g~-------~~~-----------------------P-------~~~~~~~l~~l~~--l~g~----~~ 149 (197)
T 3d5n_A 124 ---------K--GE-------RGN-----------------------P-------VLISKSLFNEIEK--LRGD----VG 149 (197)
T ss_dssp ---------T--TE-------ECS-----------------------C-------EEEEHHHHHHHHH--CCTT----CC
T ss_pred ---------C--Cc-------ccC-----------------------C-------EEECHHHHHHHHc--cCCC----cc
Confidence 0 10 000 1 1788888876553 2211 12
Q ss_pred chHhhhhCCceEEEEEec--ceEEecCCHHHHHHHhhhcc
Q 009971 327 VIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~--g~w~dIgt~edy~~An~~ll 364 (521)
+-..+.+.+.++..+..+ +.|.||+||+||..++..+.
T Consensus 150 ~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 150 ARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp THHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred HHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 222222224456667764 46899999999988876543
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=147.35 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=112.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
++++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++ +++|+|++++... +++. +
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~-----~----- 71 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL-----N----- 71 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-----T-----
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-----C-----
Confidence 345799999999999998 79999999986 9999999999998 9999999987654 1111 1
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHH-HHHHHHhcCCcEEEEEEecC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YER-FIQAHRETDADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~-ll~~h~~~~aditi~~~~~~ 243 (521)
++++.. +.+..|++++++.++..++ .+.+++++||+ +.+.+ +.. ++ +.++++.
T Consensus 72 ----~~~v~~------~~~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~----- 127 (201)
T 2e8b_A 72 ----APVVLD------EFEESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS----- 127 (201)
T ss_dssp ----CCEEEC------CCSSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-----
T ss_pred ----ceEEec------CCCCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-----
Confidence 223321 1234799999999987764 47899999999 44544 666 65 1222110
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
.. +|+ ....+|+| |+++++..+.+....+ ...
T Consensus 128 ----------~~--~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g-~~~ 159 (201)
T 2e8b_A 128 ----------VA--KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKG-DYR 159 (201)
T ss_dssp ----------EE--ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTT-CCC
T ss_pred ----------ec--CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcC-Cch
Confidence 00 010 14568999 9998776443211111 112
Q ss_pred hhcchHhhhhCCceEEEEEec--ceEE--ecCCHHHHHHHhhhc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD--GYWE--DIGTIEAFYNANLGI 363 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~--g~w~--dIgt~edy~~An~~l 363 (521)
..++++. .++..+.++ +.|. |||||+||.+++..+
T Consensus 160 ~~~~l~~-----~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 160 IWALLKD-----VGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp HHHHHHH-----HCCEEEECCGGGGGGGCCSCCC----------
T ss_pred HHHHHHH-----CCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 2444443 245566664 5689 999999998887543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=136.43 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=83.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+. + .+
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~---~~----- 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIYQ----A---SG----- 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T---TS-----
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h---cC-----
Confidence 457999999999999998 479999999987 999999999985 58999999987754321 1 11
Q ss_pred CCCcEEEeecccCCCCCCCC-CChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHH
Q 009971 167 NEGFVEVLAAQQSPENPNWF-QGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQA 227 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~-~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~ 227 (521)
++++... .+. .|++++++.++..++ .+.+++++||+ +.+. .+..+++.
T Consensus 66 ----~~~v~~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ----LKVIEDS------LADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ----CCEECCC------TTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ----CeEEecC------CCCCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 2233211 112 689999999988774 47899999999 5554 47888775
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=147.87 Aligned_cols=210 Identities=15% Similarity=0.200 Sum_probs=140.6
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHh--------CC----CceEEEEecCChHHHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN--------SN----ISKIYVLTQFNSASLNR 152 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~--------~g----i~~I~Iv~~~~~~~i~~ 152 (521)
.+|.+||||||.||||+ ...||+|+|| .|+ |+|+++++.+.. .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 57999999999999996 5799999999 666 999999999876 36 66666666677899999
Q ss_pred HHHHhhhccCCC----CcCCCcEEEeeccc-----CCCC-CCCCCChHHHHHHHHH-----HhhhcCcceEEEEeCCee-
Q 009971 153 HLSRAYASNMGG----YKNEGFVEVLAAQQ-----SPEN-PNWFQGTADAVRQYLW-----LFEEHNVLEFLVLAGDHL- 216 (521)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~~v~vl~~~q-----~~~~-~~~~~Gt~~al~~~~~-----~l~~~~~~~~Lvl~gD~l- 216 (521)
|+++...+++.. ++.+..+..+.... .+.. ...+.||++.+..... .+.....++|+|+++|.+
T Consensus 177 ~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L 256 (505)
T 1jv1_A 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (505)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccc
Confidence 998854443310 01111111110000 0000 1125899998876542 222223589999999995
Q ss_pred ccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCC
Q 009971 217 YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP 294 (521)
Q Consensus 217 ~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
+..+...++..|.++++++++.+.+... ....+|++..+ +| ++++|.|+|...... .+ +. .....
T Consensus 257 ~~~~d~~~lg~~~~~~~~~~~~v~~k~~-~~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~~---~~-------~~-g~~~~ 323 (505)
T 1jv1_A 257 VKVADPRFIGFCIQKGADCGAKVVEKTN-PTEPVGVVCRV-DGVYQVVEYSEISLATAQK---RS-------SD-GRLLF 323 (505)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCS-TTCSCCEEEEE-TTEEEEECGGGSCHHHHHC---BC-------TT-SSBSS
T ss_pred cccchHHHHHHHHHcCCCEEEEEEEccC-CccCcceEEEE-CCeEEEEEEeeCCHHHhhh---cc-------cc-ccccc
Confidence 7777778999999999999998876321 34678888774 34 567777777643211 00 00 01123
Q ss_pred ceeeEEEEEEeHHHHHHHHh
Q 009971 295 YIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 295 ~l~~~GIyifs~~vl~~ll~ 314 (521)
+..++|+|+|+.++++++.+
T Consensus 324 ~~~N~~~~~f~l~~L~~i~~ 343 (505)
T 1jv1_A 324 NAGNIANHFFTVPFLRDVVN 343 (505)
T ss_dssp CEEEEEEEEEEHHHHHHHHH
T ss_pred ceeeEEEEEecHHHHHHHHH
Confidence 58999999999999987765
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=149.94 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=129.2
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
||++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+.+++.+
T Consensus 1 Mmki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~~--------- 66 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTKN--------- 66 (371)
T ss_dssp -CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCSS---------
T ss_pred CCccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhCC---------
Confidence 356899999999999998 3579999999987 999999999998 57999999998 44433322211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
++++.. ..|..++++.++..++ .+.+++++||. +.+ ..+.++++.+.+.+ .++.+.+..
T Consensus 67 -----v~~v~~---------g~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~~~ 127 (371)
T 1w55_A 67 -----YEFIEG---------GDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALKVA 127 (371)
T ss_dssp -----SEEEEC---------CSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEECCC
T ss_pred -----CEEEeC---------CCChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEEee
Confidence 233311 1568899999987664 47899999999 555 45889998876543 344444332
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeE-EEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM-GIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-GIyifs~~vl~~ll~~~~~~~~d 322 (521)
+ ...+ . .+.+.... +... .-++|+++.+.++++... .
T Consensus 128 d--~vk~----v---------~~t~~r~~-----------------------l~~~~~P~~f~~~~l~~~~~~~~----~ 165 (371)
T 1w55_A 128 D--TTLF----D---------NEALQREK-----------------------IKLIQTPQISKTKLLKKALDQNL----E 165 (371)
T ss_dssp S--CEEE----T---------TEEECGGG-----------------------CCEECSCEEEEHHHHHHHTSSCC----C
T ss_pred c--Ceee----e---------eeecCccc-----------------------eeecCCcceecHHHHHHHHHhcc----c
Confidence 1 1000 0 01111100 1000 124688887766654321 1
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
..+....+...+.++..++.++.|+||+||+||..|+
T Consensus 166 -~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 166 -FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp -CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred -ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 2232333334467888888778899999999998887
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=137.11 Aligned_cols=144 Identities=16% Similarity=0.168 Sum_probs=90.9
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc-------------ceEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLL 436 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~-------------~s~i 436 (521)
++++.+.|.+.+.+.+.+.+. .+.| .++.||++|.|+. +.|. ++.||++|.|+++|.|+ ...|
T Consensus 24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~I 103 (283)
T 4eqy_A 24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVI 103 (283)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEE
T ss_pred ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEE
Confidence 566666666666666666665 4444 4688888888886 7777 78999999999888883 2333
Q ss_pred ECCccccccccccccccCCCc----ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----
Q 009971 437 MGADYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI----- 506 (521)
Q Consensus 437 ~~~~~~e~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~----- 506 (521)
.++..... .+.|..+.. .+.||+++.|. ++.|++++.||++++|.+...+.++++++++++|+.+.
T Consensus 104 G~~~~Ig~----~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~ 179 (283)
T 4eqy_A 104 GDRNTIRE----FTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY 179 (283)
T ss_dssp CSSCEECT----TEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCCcccCc----ceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC
Confidence 33322211 122222111 15666666665 56666666666666666666666666666666666662
Q ss_pred EEECCCCEECCCccC
Q 009971 507 VTIIKDALIPSGTII 521 (521)
Q Consensus 507 v~I~~~~~i~~gsvi 521 (521)
++||++++|++|++|
T Consensus 180 v~Ig~~~vvg~~s~V 194 (283)
T 4eqy_A 180 VRIGAHSMLGGASAL 194 (283)
T ss_dssp CEECTTCEECTTCEE
T ss_pred eEECCCcEECCCCeE
Confidence 567777777777764
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=134.01 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=93.4
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEE-------------cceEEEC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII-------------EDTLLMG 438 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I-------------~~s~i~~ 438 (521)
++++.+.|..++.+.|++.+. .++.||++|+|+. +.|. ++.||++|.|+++|.| ...+.++
T Consensus 8 ~I~~~a~ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG 83 (259)
T 3hsq_A 8 IIDPKAELHESVEVGPYSIIE----GNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIG 83 (259)
T ss_dssp EECTTCEECTTCEECTTCEEC----SSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEEC
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEEC
Confidence 566677777777777776652 4677888888876 7777 5888888888888888 4444444
Q ss_pred CccccccccccccccCCCc---ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEE
Q 009971 439 ADYYETDADRRFLAAKGSV---PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 509 (521)
Q Consensus 439 ~~~~e~~~~~~~~~~~~~~---~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I 509 (521)
++.+- ...+.+..+.. .+.||+++.|. ++.|++++.||+++++.+...+..+++++++++|+.+. ++|
T Consensus 84 ~~~~I---g~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I 160 (259)
T 3hsq_A 84 DHNIF---REYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFV 160 (259)
T ss_dssp SSCEE---CTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred CCcEE---CCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEE
Confidence 32110 01222221111 35677777776 67778888888888888777777777777777777772 456
Q ss_pred CCCCEECCCccC
Q 009971 510 IKDALIPSGTII 521 (521)
Q Consensus 510 ~~~~~i~~gsvi 521 (521)
|++++|++||+|
T Consensus 161 g~~~~Vg~~s~V 172 (259)
T 3hsq_A 161 GDYSMVAGLAKV 172 (259)
T ss_dssp CTTCEECSSEEE
T ss_pred CCCCEECCCCEE
Confidence 777777777654
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=137.74 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=39.5
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCcc
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 520 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsv 520 (521)
.||+++.|. ++.|+++++||++|+|.....+...++||++|+|+.+. ++|+++++|+++++
T Consensus 229 ~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~ 295 (357)
T 4e79_A 229 ILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM 295 (357)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred cccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence 445555554 45666677777777777777777777788888887772 34555555555554
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=136.59 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=39.7
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCcc
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 520 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsv 520 (521)
.||+++.|. ++.|++++.||++|+|.....+.+..+||++++|+.+. ++|+++++|+++++
T Consensus 224 ~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~ 290 (341)
T 3eh0_A 224 IIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGM 290 (341)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCE
T ss_pred EeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCE
Confidence 344444444 45666677777777777777777777777777777763 45666666666665
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=141.03 Aligned_cols=259 Identities=15% Similarity=0.102 Sum_probs=161.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC-CCcchhHHHHHHhHhCCCc-----eEEEEec-CChHHHHHHHH-Hhhh
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNSNIS-----KIYVLTQ-FNSASLNRHLS-RAYA 159 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~-G~~pLI~~~l~~l~~~gi~-----~I~Iv~~-~~~~~i~~~l~-~~~~ 159 (521)
.++.+||||||.||||+ ...||+|+||+ |+ |+|+++++++...+.. .++|.+. +..+.+.+||+ +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 47999999999999999 67999999998 76 9999999999886533 4555554 55789999998 6433
Q ss_pred ccCC----CCcCCCcEEEeeccc-C---CC----CCCCCCChHHHHHHH-----HHHhhhcCcceEEEEeCCeecc-ccH
Q 009971 160 SNMG----GYKNEGFVEVLAAQQ-S---PE----NPNWFQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDY 221 (521)
Q Consensus 160 ~~~~----~~~~~~~v~vl~~~q-~---~~----~~~~~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl 221 (521)
|++. ..|.++.+..+.... . .+ ....+.||++.+... ++.+.....++++++++|.+.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 4331 112222222222111 0 00 011257999988755 3333222457999999999874 577
Q ss_pred HHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeC------CCCC---------eEEeeeCCChhhhhhcccccccccCC
Q 009971 222 ERFIQAHRETDADITVAALPMDEKRATAFGLMKID------EEGR---------IIEFSEKPKGEQLKAMKVDTTILGLD 286 (521)
Q Consensus 222 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d------~~gr---------V~~i~ekp~~~~~~~~~~~~~~~~~~ 286 (521)
.++..|.++++++++.+.+.... ...+|++..+ .+|+ ++++.+-|....... +
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~----~------ 297 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF----Q------ 297 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH----H------
T ss_pred -HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc----c------
Confidence 89999999999999998876542 2467887762 4567 666666655432210 0
Q ss_pred chhhccCCceeeEEEEEEeHHHHHHHHhhh-----CCC-----CCC-----h-----hhcchHhhhhCCceEEEEEec-c
Q 009971 287 DERAKEMPYIASMGIYVISKDVMLNLLRDK-----FPG-----AND-----F-----GSEVIPGATSIGMRVQAYLYD-G 345 (521)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~~~-----~~~-----~~d-----~-----~~dil~~li~~~~~I~~~~~~-g 345 (521)
......+.++...+|+-+.+.++++.. .+. .-+ . .+-.+..+++.-.+..++.++ .
T Consensus 298 ---g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~ 374 (505)
T 2oeg_A 298 ---DINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRS 374 (505)
T ss_dssp ---CTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGG
T ss_pred ---CccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccc
Confidence 001123589999999999988877651 110 000 0 011112222211234444443 2
Q ss_pred eEEecCCHHHHHHHhhhccc
Q 009971 346 YWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 346 ~w~dIgt~edy~~An~~ll~ 365 (521)
.|.-+-+..++..+...+..
T Consensus 375 ~FsPvKn~~dl~~~~sdly~ 394 (505)
T 2oeg_A 375 RFAPVKTCADLLALRSDAYV 394 (505)
T ss_dssp GCCCCSSHHHHHHHHSTTEE
T ss_pred eeecccCCCCHHHHHHHHHh
Confidence 47778888888877776553
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=133.63 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=90.2
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc-------------ceEEEC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLLMG 438 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~-------------~s~i~~ 438 (521)
++++.+.|..++.+.|.+.+. .++.||++|+|+. |.|. ++.||++|.|+++|.|+ ...|.+
T Consensus 9 ~I~~~a~Ig~~~~Ig~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~ 84 (270)
T 1j2z_A 9 IISPKAEINKGVEIGEFCVIG----DGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE 84 (270)
T ss_dssp EECTTSEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECC
Confidence 334444444444444444432 4788899999987 8887 89999999999999984 223333
Q ss_pred CccccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EE
Q 009971 439 ADYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VT 508 (521)
Q Consensus 439 ~~~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~ 508 (521)
+.... ..+.+..+. -.+.||+++.|. ++.|++++.||++++|.+...+..+++++++++|+.+. ++
T Consensus 85 ~~~I~----~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~ 160 (270)
T 1j2z_A 85 DNLIR----EFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVR 160 (270)
T ss_dssp SCEEC----TTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCE
T ss_pred CCEEC----CCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcE
Confidence 22221 112222221 126778888775 67777777888887777777777777777777777663 66
Q ss_pred ECCCCEECCCccC
Q 009971 509 IIKDALIPSGTII 521 (521)
Q Consensus 509 I~~~~~i~~gsvi 521 (521)
||++|+|++||+|
T Consensus 161 IG~~a~Ig~~s~V 173 (270)
T 1j2z_A 161 IAKGCMIAGKSAL 173 (270)
T ss_dssp ECTTCEECTTCEE
T ss_pred eCCceEEecCcEe
Confidence 7788888887764
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=136.96 Aligned_cols=61 Identities=18% Similarity=0.394 Sum_probs=42.1
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCcc
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 520 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsv 520 (521)
.||+++.|. ++.|++++.||++|+|.+...+...++||++|+|+.+. ++||++++|+++++
T Consensus 246 ~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~ 312 (372)
T 3pmo_A 246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM 312 (372)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence 455555554 56666777777777777777777778888888888773 34566666666654
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-13 Score=124.96 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=84.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +|+|++++ .+.+. .+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc--------C--
Confidence 689999999999997 79999999987 9999999999987 89999864 33333 332211 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi 237 (521)
++++... .+..|...+++.++..+ .+.+ +++||+ +.+.+ +..+++.+.+.+.++++
T Consensus 60 -~~~v~d~------~~~~G~~~si~~gl~~~----~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 -AEFIWDL------HKGVGSIAGIHAALRHF----GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp -SCEECCT------TCCCSHHHHHHHHHHHH----SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred -CeEEecC------CCCCChHHHHHHHHHHc----CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 2233211 12368889999998776 2578 999999 66655 88898888765666543
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=132.42 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=103.1
Q ss_pred HHHhhhcccCCC-CCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee-----eEECCCCEECCCC
Q 009971 357 YNANLGITKKPI-PDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH-----SVVGLRSCISEGA 429 (521)
Q Consensus 357 ~~An~~ll~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~-----s~ig~~~~Ig~~~ 429 (521)
.++|..++.+.. ..+. +++....+...+.+.|++.+. .++.||++|.|+. |.|.. ++||++|.|+++|
T Consensus 38 ~~~~~~~~~~~p~~~~~-~~~~~~~I~~~~~I~~~a~I~----g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~ 112 (247)
T 1qre_A 38 TVDEFSNIRENPVTPWN-PEPSAPVIDPTAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGV 112 (247)
T ss_dssp CCCCCCSEECCCCBTTB-SSCCCCEECTTCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTC
T ss_pred hhhhhhhccCCCCcccc-ccCCCcEECCCcEECCCCEEe----CCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCe
Confidence 345556544321 1244 566677788888888888763 4667777777776 66663 3899999999999
Q ss_pred EEcceEEE-------CCccccccc-cccccccCCCcceeeCCCCEEee-eEECCCCEECCCcEEeCCCccCCceeecCCe
Q 009971 430 IIEDTLLM-------GADYYETDA-DRRFLAAKGSVPIGIGKNSHIKR-AIIDKNARIGDNVKIVNSDSVQEAARETDGY 500 (521)
Q Consensus 430 ~I~~s~i~-------~~~~~e~~~-~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~ 500 (521)
.|...... ...+++... ...+.||+++ .||++++|.+ ++||++|.||.+++|.+ ..+++++.++.++
T Consensus 113 ~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v---~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~Igags 188 (247)
T 1qre_A 113 VLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNV---SLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRS 188 (247)
T ss_dssp EEEECCSBCTTSCBCGGGCEEETTEEESEEECTTC---EECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTC
T ss_pred EEEecccccccCcccccceeeccCccCceEECCCC---EECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCC
Confidence 99753210 001111111 1245666666 8999999986 99999999999999986 5555555555555
Q ss_pred EEcCCeEEECCCCEECCCccC
Q 009971 501 FIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 501 ~I~~g~v~I~~~~~i~~gsvi 521 (521)
+| .+ ++|+++++|++|++|
T Consensus 189 vV-~~-~~I~~~~~v~~g~vv 207 (247)
T 1qre_A 189 AA-IG-VTIPDGRYIPAGMVV 207 (247)
T ss_dssp EE-ES-CEECTTBEECTTCEE
T ss_pred EE-CC-eEeCCCCEECCCCEE
Confidence 55 44 557888888888764
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=131.92 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=90.5
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc-------------ceEEEC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLLMG 438 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~-------------~s~i~~ 438 (521)
++++.+.|+.++.+.|++.+. .++.||++|+|+. +.|. ++.||++|.|++++.|. ..+.++
T Consensus 12 ~I~~~a~Ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG 87 (266)
T 3r0s_A 12 VIEEGAQLGDDVVIEAYAYVS----KDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIG 87 (266)
T ss_dssp EECTTCEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEEC
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEEC
Confidence 566667777777777766653 4677888888886 7777 78888888888888884 233333
Q ss_pred -CccccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----E
Q 009971 439 -ADYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 507 (521)
Q Consensus 439 -~~~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v 507 (521)
+..... .+.+..+. -++.||+++.|. ++.|++++.||+++++.+...+..+++++++++|+.+. +
T Consensus 88 ~~~~Ig~----~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 163 (266)
T 3r0s_A 88 KNATIRE----FATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV 163 (266)
T ss_dssp TTCEECT----TCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCCEECC----ceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCc
Confidence 322211 11221111 015677777775 66677777777777777766666666777777766662 6
Q ss_pred EECCCCEECCCccC
Q 009971 508 TIIKDALIPSGTII 521 (521)
Q Consensus 508 ~I~~~~~i~~gsvi 521 (521)
+||++++|++|++|
T Consensus 164 ~Ig~~a~Vg~~s~V 177 (266)
T 3r0s_A 164 KVGEGCMIAGASAL 177 (266)
T ss_dssp EECTTCEECSSCBB
T ss_pred EECCCCEEccCCeE
Confidence 67777787777764
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=134.26 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=88.0
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc-----eEEECCccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-----TLLMGADYYET 444 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~-----s~i~~~~~~e~ 444 (521)
+++|.+.|.+.+.+.+++.+. .+.| .++.||++|+|+. +.|. ++.||++|.|++++.|.. +.|..+.....
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 445555555555555555554 3334 3566666666665 5555 566666666666665542 11111111000
Q ss_pred ---------------ccc------------ccccccCCC---cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCc
Q 009971 445 ---------------DAD------------RRFLAAKGS---VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEA 493 (521)
Q Consensus 445 ---------------~~~------------~~~~~~~~~---~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~ 493 (521)
... ..+.|..+. -++.||+++.|. ++.|+++|.||+++++.+...+...
T Consensus 89 ~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~ 168 (305)
T 3t57_A 89 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGH 168 (305)
T ss_dssp TCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred ccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCC
Confidence 000 122222211 135677777775 7788888888888888888888888
Q ss_pred eeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 494 ARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 494 ~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
.+++++++|+.+. ++||++|+|++||+|
T Consensus 169 v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 169 VVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 8888888888773 668888888888764
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=131.24 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=84.2
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc-------------ceEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLL 436 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~-------------~s~i 436 (521)
++++.+.+.+.+.+.+.+.+. .+.| .++.||++|+|+. +.|. ++.||++|.|++++.|+ ...|
T Consensus 9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~I 88 (265)
T 4e6u_A 9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEI 88 (265)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEE
T ss_pred eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEE
Confidence 444444444444444444443 3333 5678888888886 7777 68888888888888883 2333
Q ss_pred ECCccccccccccccccCCCc----ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----
Q 009971 437 MGADYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI----- 506 (521)
Q Consensus 437 ~~~~~~e~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~----- 506 (521)
.++.... ..+.+..+.. .+.||+++.|. ++.|++++.||++++|.+...+.++++++++++|+.+.
T Consensus 89 G~~~~Ig----~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~ 164 (265)
T 4e6u_A 89 GNNNLIR----EHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF 164 (265)
T ss_dssp CSSCEEC----TTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred CCCeEEC----CceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC
Confidence 3322221 1222222110 14566666665 55566666666666666666555566666666666552
Q ss_pred EEECCCCEECCCccC
Q 009971 507 VTIIKDALIPSGTII 521 (521)
Q Consensus 507 v~I~~~~~i~~gsvi 521 (521)
++||++++|++||+|
T Consensus 165 v~Ig~~~~i~~~svV 179 (265)
T 4e6u_A 165 CKIDSYSMIGGASLI 179 (265)
T ss_dssp CEECTTCEECTTCEE
T ss_pred cEECCCCEEcCCCEE
Confidence 667777888777764
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-14 Score=152.16 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=77.9
Q ss_pred cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 399 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
.++.||++|.|+. |.|.+++||++|.|+++|+|.+++|.++ +.||+++.|.+++||++|.
T Consensus 290 g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig~~a~I~gv~IGd~v~ 350 (496)
T 3c8v_A 290 GDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTAHGGKIINAHLGDMIF 350 (496)
T ss_dssp SSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEECTTCEEESEEEEETCE
T ss_pred CCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEECCCcEEcCceECCCcE
Confidence 4788999999997 8889999999999999999999998876 6899999999999999999
Q ss_pred ECCCcEEeCCCccCCceeecCCeEEcCCeEEEC--CCCEECCCc
Q 009971 478 IGDNVKIVNSDSVQEAARETDGYFIKSGIVTII--KDALIPSGT 519 (521)
Q Consensus 478 Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~--~~~~i~~gs 519 (521)
||++++|.+.. ...+++|++++|+.| ++|. +++.||+++
T Consensus 351 IG~~a~I~~~~--~~~v~IG~~a~IGag-svV~~~~~~~I~~~s 391 (496)
T 3c8v_A 351 TGFNSFLQGSE--SSPLKIGDGCVVMPH-TIIDLEEPLEIPAGH 391 (496)
T ss_dssp ECTTCEEECCS--SSCEEECTTCEECTT-CEEECSSCEEECSSE
T ss_pred ECCCCEEeCCC--CcceEECCCCEECCC-CEEecCCCcEeCCCC
Confidence 99999998761 122445555555555 3333 444444444
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=129.66 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=33.3
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEee---------------eEECCCCEECCCCEEc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIHH---------------SVVGLRSCISEGAIIE 432 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~~---------------s~ig~~~~Ig~~~~I~ 432 (521)
++++.+.|..++.+.+++.+. ++.| .++.||++|.|++ |.|.+ ++||++|.|++++.|.
T Consensus 10 ~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~ 86 (273)
T 3fs8_A 10 IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIY 86 (273)
T ss_dssp EECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEE
T ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEe
Confidence 444445554444444444444 3334 4466666666665 66553 6777777777666664
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=122.33 Aligned_cols=117 Identities=17% Similarity=0.322 Sum_probs=89.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEc------ceEEECCccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIE------DTLLMGADYY 442 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~------~s~i~~~~~~ 442 (521)
++++...|..++.+.|++.+. .++.||++|.|+. |.|. +++||++|.|+++|.|. ++++.++
T Consensus 29 ~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~--- 101 (191)
T 3ixc_A 29 YAGVSPSVDSTAFIAGNARII----GDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF--- 101 (191)
T ss_dssp BTTBCCEECTTSEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT---
T ss_pred ccCCCCEECCCCEECCCCEEe----CCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC---
Confidence 556777778888888887763 3567777777776 6665 34999999999999997 4555444
Q ss_pred cccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 443 ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 443 e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+.||+++.|.+++|+++|.||.+++|.+ +.+++++++|++| ++|.++..|+++++
T Consensus 102 ----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~------~~~Ig~~~~Ig~g-svV~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 ----------------VTIGHSCILHACTLGNNAFVGMGSIVMD------RAVMEEGSMLAAG-SLLTRGKIVKSGEL 156 (191)
T ss_dssp ----------------CEECTTCEECSCEECTTCEECTTCEECT------TCEECTTCEECTT-CEECTTCEECTTEE
T ss_pred ----------------CEECCCCEEECCEECCCCEECCCCEEeC------CeEECCCCEECCC-CEECCCcCcCCCeE
Confidence 5899999999999999999999998876 4567777777777 66777777777665
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=127.43 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=83.6
Q ss_pred ccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEEC
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 438 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~ 438 (521)
+++.+.+.+.+.+.+.+.+. .+.| .++.||++|+|+. |.|. ++.||++|.|+++|.|.. .+.++
T Consensus 8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG 87 (262)
T 2qia_A 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG 87 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEEC
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEEC
Confidence 33444443334444444333 2333 4688888888887 7777 788888888888888853 23333
Q ss_pred C-ccccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----E
Q 009971 439 A-DYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 507 (521)
Q Consensus 439 ~-~~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v 507 (521)
+ .... ..+.|..+. -++.||+++.|. ++.|.+++.||+++++.+...+.+..+++++++|+.+. +
T Consensus 88 ~~~~Ig----~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v 163 (262)
T 2qia_A 88 DRNRIR----ESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFC 163 (262)
T ss_dssp SSCEEC----TTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CCceeC----CCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCC
Confidence 2 1111 111221111 025666666665 56666666666666666666666666666666666552 6
Q ss_pred EECCCCEECCCccC
Q 009971 508 TIIKDALIPSGTII 521 (521)
Q Consensus 508 ~I~~~~~i~~gsvi 521 (521)
+||++++|++||+|
T Consensus 164 ~Ig~~~~ig~~s~V 177 (262)
T 2qia_A 164 IIGAHVMVGGCSGV 177 (262)
T ss_dssp EECTTCEECSSCEE
T ss_pred EECCCCEEccCCEE
Confidence 68888888888764
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=118.59 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=87.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEc-----ceEEECCcccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIE-----DTLLMGADYYE 443 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~-----~s~i~~~~~~e 443 (521)
+.++...+...+.+.|++.+. .++.||++|.|+. |.|.. ++||++|.|+++|.|. ++++.++
T Consensus 8 ~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~---- 79 (173)
T 1xhd_A 8 YKEKKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---- 79 (173)
T ss_dssp BTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT----
T ss_pred cCCCCCEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC----
Confidence 445566677777777777763 4678888888887 77764 8999999999999998 4555443
Q ss_pred ccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 444 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 444 ~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+.|++++.|.+++|+++|.||.+++|... .+++++++|+++ ++|.++..||++++
T Consensus 80 ---------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~------~~Ig~~~~Ig~~-s~V~~~~~i~~~~v 134 (173)
T 1xhd_A 80 ---------------VTVGHQVILHSCHIKKDALIGMGSIILDG------AEIGEGAFIGAG-SLVSQGKKIPPNTL 134 (173)
T ss_dssp ---------------CEECTTCEEESCEECTTCEECTTCEECTT------CEECTTCEECTT-CEECTTCEECTTEE
T ss_pred ---------------CEECCCCEEeCCEECCCCEEcCCCEEcCC------CEECCCCEECCC-CEECCCcEeCCCCE
Confidence 58999999999999999999999988764 556666666666 55555556665554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-14 Score=135.70 Aligned_cols=140 Identities=19% Similarity=0.261 Sum_probs=67.2
Q ss_pred CceEEEEEecce----EEecCCHHHHHHHhhhcccCCCC---CccccccCCCcccCCCCcCCCceeecccccceEECCCc
Q 009971 335 GMRVQAYLYDGY----WEDIGTIEAFYNANLGITKKPIP---DFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGC 407 (521)
Q Consensus 335 ~~~I~~~~~~g~----w~dIgt~edy~~An~~ll~~~~~---~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~ 407 (521)
..+++++...++ |.|+++ |+++|..++..... ...............+.+.|++.+. .++.||++|
T Consensus 38 ~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~----~~v~Ig~~~ 110 (240)
T 3r8y_A 38 TVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIR----DHVEIGDNA 110 (240)
T ss_dssp TSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEB----SSCEECTTC
T ss_pred cceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEEC----CCcEECCCC
Confidence 456777766666 888877 88888876532210 0000000000011123333333331 345566666
Q ss_pred EEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee---------eEECCCC
Q 009971 408 VIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR---------AIIDKNA 476 (521)
Q Consensus 408 ~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~ii~~~~ 476 (521)
+|+. +.|. +++||++|.|+.+|.|++.++++. + +.|++++.+.+ ++|+++|
T Consensus 111 ~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~---------------~---~~I~~~~~i~~~~~~~~~~~~~Ig~~~ 172 (240)
T 3r8y_A 111 VIMMNATINIGAVIGEGSMIDMNAVLGGRATVGK---------------N---CHVGAGAVLAGVIEPPSAKPVIVEDDV 172 (240)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECT---------------T---CEECTTCEECCCCSCTTSCCCEECTTC
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECC---------------C---cEECCCcEECCCccCCCCCCcEECCCC
Confidence 6654 4442 455555555555555542222221 2 25555665554 5666666
Q ss_pred EECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 477 RIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 477 ~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||.+++|.. ++++|++++|++|
T Consensus 173 ~IG~~~~I~~------~~~Ig~~~~I~~g 195 (240)
T 3r8y_A 173 VIGANVVVLE------GVTVGKGAVVAAG 195 (240)
T ss_dssp EECTTCEECT------TCEECTTCEECTT
T ss_pred EECCCCEECC------CcEECCCCEECCC
Confidence 6666666543 2344444555554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=122.89 Aligned_cols=131 Identities=19% Similarity=0.178 Sum_probs=81.0
Q ss_pred CCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccc-cccccccc
Q 009971 377 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYY-ETDADRRF 450 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~-e~~~~~~~ 450 (521)
++..|.+.+.+.+.+.+. .++.||++|+|+. |.|. ++.||++|.|+++|.|.+......... .......+
T Consensus 11 ~~v~I~~~a~I~~~a~I~----g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~ 86 (194)
T 3tv0_A 11 KSVKIAPGAVVCVESEIR----GDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 86 (194)
T ss_dssp -CEEECTTCEECTTSEEE----SSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred CCCEECCCCEEcCCCEEe----CCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence 334445555555555542 4678888888887 7775 468999999999999976543322111 11111334
Q ss_pred cccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 451 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.||++. .|+.++.+.++.|++++.||.++.|. .+++||++|+|++| ++|.+++.||++++|
T Consensus 87 ~Ig~~~---~i~~~~~i~~~~Ig~~~~Ig~~~~I~------~gv~IG~~~~Igag-svV~~~~~Ip~~svv 147 (194)
T 3tv0_A 87 IIGTNN---VFEVGCYSQAMKMGDNNVIESKAYVG------RNVILTSGCIIGAC-CNLNTFEVIPENTVI 147 (194)
T ss_dssp EECSSC---EECTTCEECCSEECSSCEECTTCEEC------TTEEECSSCEECTT-CEECCCEEECTTEEE
T ss_pred EECCcc---eEecceeEeeeeecccceecceeeEC------CeEEECCCCEECCC-CEECCCcEECCCCEE
Confidence 454444 56666666666666666666666665 45677777777777 777777777777654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=132.68 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=83.5
Q ss_pred EEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCC
Q 009971 347 WEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLR 422 (521)
Q Consensus 347 w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~ 422 (521)
++-+.+|+..+.....++........ .+++.+.+...+.+.+++.+. ++.| .++.||++|+|+. |.|. ++.||++
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~-~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~ 173 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAA-GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEG 173 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCS-EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred EEEECCHHHHHHHHHHHhcccccccc-ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 45566676655444444433212223 566666666655555555554 2223 2344444444443 3333 3444444
Q ss_pred CEECCCCEEcceEEECCcc-ccccc---------------------cccccccCCCcceeeCCCCEE-----eeeEECCC
Q 009971 423 SCISEGAIIEDTLLMGADY-YETDA---------------------DRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 475 (521)
Q Consensus 423 ~~Ig~~~~I~~s~i~~~~~-~e~~~---------------------~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 475 (521)
|.|++++.|.+.+.+++.. ....+ ...+.||+++ .||++++| .+++|+++
T Consensus 174 ~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v---~IGa~~~I~~g~~~~t~IG~~ 250 (372)
T 3pmo_A 174 GWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV---EIGANTTIDRGALSDTLIGNG 250 (372)
T ss_dssp CEECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSC---EECTTCEEECCSSSCEEECTT
T ss_pred cccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCC---EECCCcEEccCcccceEECCC
Confidence 4444333333322222110 00000 0133444444 55555555 34556666
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.|+.++.|.....+++.+.++.++.|..+ ++||++|+|+++++|
T Consensus 251 ~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~-v~IG~~~~Ig~~a~V 295 (372)
T 3pmo_A 251 VKLDNQIMIAHNVQIGDHTAMAACVGISGS-AKIGRHCMLAGGVGL 295 (372)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCC-CEECCCeEEeCCCEE
Confidence 666666666555555555555555555555 888999988888764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=130.50 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=78.0
Q ss_pred eEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECC
Q 009971 346 YWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGL 421 (521)
Q Consensus 346 ~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~ 421 (521)
.|.-+.+|...+.....++.+..+ +. .+++.+.|.+++.+.+++.+. ++.| .++.||++|+|+. |.|. ++.||+
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~-~~-~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~ 155 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKIS-ST-GIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGK 155 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCC-CC-EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred cEEEECCHHHHHHHHHHHhccccc-cC-eeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 356677777654443444433211 13 555555555555554444443 2222 2344444444443 4444 444444
Q ss_pred CCEECCCCEEc------------ceEEECCccc--ccccc--------ccccccCCCcceeeCCCCEE-----eeeEECC
Q 009971 422 RSCISEGAIIE------------DTLLMGADYY--ETDAD--------RRFLAAKGSVPIGIGKNSHI-----KRAIIDK 474 (521)
Q Consensus 422 ~~~Ig~~~~I~------------~s~i~~~~~~--e~~~~--------~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~ 474 (521)
+|.|++++.|. ...+++.+-+ ..... -.+.||+++ .||++++| .+++|++
T Consensus 156 ~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v---~IG~~~~I~~g~~~~t~Ig~ 232 (357)
T 4e79_A 156 DCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDV---RIGSNCSIDRGALDNTILED 232 (357)
T ss_dssp SCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTC---EECTTCEECCCSSSCEEECT
T ss_pred CCEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCc---EEccccEEeccccCCccccC
Confidence 44444444442 2222221100 00000 023333333 34444444 2344444
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.|+.++.|.....+++.+.++.++.|..+ ++||++|+|+++++|
T Consensus 233 ~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~-v~IG~~~~Ig~~s~V 278 (357)
T 4e79_A 233 GVIIDNLVQIAHNVHIGSNTAIAAKCGIAGS-TKIGKNCILAGACGV 278 (357)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CcccCCCcccCCCeEECCCCEECCCCEECCC-cEECCCCEECcCCEE
Confidence 4444444444444444444444444444444 888999999888864
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=126.77 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred CcccCCCCcCCCceee-ccccc-ceEECCCcEEce-eEE-------------eeeEECCCCEECCCCEEcce-------E
Q 009971 379 APIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKI-------------HHSVVGLRSCISEGAIIEDT-------L 435 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i~-~~~Ig~~~~I~~-~~I-------------~~s~ig~~~~Ig~~~~I~~s-------~ 435 (521)
+.|...+.+.+++.+. ++.|. ++.||++|.|+. |.| .+++||+++.|+++|.|... +
T Consensus 26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~ 105 (270)
T 1j2z_A 26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKT 105 (270)
T ss_dssp CEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEE
T ss_pred CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccE
Confidence 3333334444444443 34443 677888888876 777 46788888888888888643 3
Q ss_pred EECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe
Q 009971 436 LMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 506 (521)
Q Consensus 436 i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~ 506 (521)
.++++.. . ...++++.+ +.||+++.|. ++.+..+++||++++|.....+...++++++++|+.+.
T Consensus 106 ~IG~~~~-I--~~~~~I~~~---~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s 171 (270)
T 1j2z_A 106 LIGDKNL-L--MAYVHVAHD---CVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKS 171 (270)
T ss_dssp EECSSCE-E--CTTCEECTT---CEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred EECCCcE-E--CcccccCCC---cEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEeCCceEEecCc
Confidence 3332100 0 012223322 2566666665 56666667777777777777777777777777777773
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=117.59 Aligned_cols=129 Identities=15% Similarity=0.214 Sum_probs=90.0
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-e---eEECCCCEECCCCEEcceEEECCccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIEDTLLMGADYYETDADR 448 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~---s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~ 448 (521)
+......+...+.+.|++.+. .++.||++|.|+. +.|. + +.||++|.|+++|.|.... .........
T Consensus 11 ~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~----~~~~~~~~~ 82 (187)
T 3r3r_A 11 YKNLFPGIGQRVMIDTSSVVI----GDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTH----KSSSNPHGN 82 (187)
T ss_dssp BTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBC----CBTTBC-CB
T ss_pred hcccCcccCCCeEECCCCEEE----CceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCC----ccccCCCCC
Confidence 445667777888888888763 3577888888876 7776 3 4999999999999994210 000001112
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+.||+++ .||++++|.+++||++|.||.+++|.. +++++++++|+++ ++|.++..|+++++
T Consensus 83 ~~~Ig~~~---~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~------~~~Ig~~~~Ig~~-s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 83 PLIIGEDV---TVGHKVMLHGCTIGNRVLVGMGSIVLD------GAIIEDDVMIGAG-SLVPQHKRLESGYL 144 (187)
T ss_dssp CEEECSSC---EECTTCEEESCEECSSEEECTTCEECT------TCEECSSEEECTT-CEECTTCEECTTEE
T ss_pred CeEECCCC---EECCCCEEeCcEECCCCEECCCCEECC------CCEECCCCEECCC-CEECCCcCcCCCcE
Confidence 33444444 899999999999999999999998865 4667777777777 66777777777765
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=129.60 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=88.7
Q ss_pred EecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCC
Q 009971 348 EDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRS 423 (521)
Q Consensus 348 ~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~ 423 (521)
+-+.+|...+.....++....+... .+++.+.+..++++.+++.+. ++.| .++.||++|+|+. |.|. ++.||++|
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~-~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~ 152 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQ-NIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGS 152 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCC-SBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEeCCHHHHHHHHHHHhcccCCccC-ccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCc
Confidence 4456776644433334333222223 566666666666666655554 3333 2455555555554 5553 45555555
Q ss_pred EECCCCEEcceEEEC-Cccccccc---------------------cccccccCCCcceeeCCCCEE-----eeeEECCCC
Q 009971 424 CISEGAIIEDTLLMG-ADYYETDA---------------------DRRFLAAKGSVPIGIGKNSHI-----KRAIIDKNA 476 (521)
Q Consensus 424 ~Ig~~~~I~~s~i~~-~~~~e~~~---------------------~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~~ 476 (521)
.|++++.|.+.+.++ +.+....+ .....||+++ .||++++| .+++|++++
T Consensus 153 ~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v---~Ig~~~~I~~~~~~~~~Ig~~~ 229 (341)
T 3eh0_A 153 RLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRV---EIGACTTIDRGALDDTIIGNGV 229 (341)
T ss_dssp EECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSC---EECTTCEEECCSSSCEEECTTC
T ss_pred EECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCc---EECCccEeeccccCceEeccce
Confidence 555444442222122 11110000 0123444444 55555555 245566666
Q ss_pred EECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 477 RIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 477 ~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.|+.++.|.....+++.+.++.++.|..+ ++||++|+|+++++|
T Consensus 230 ~I~~~v~I~~~v~IG~~~~i~~~~~i~g~-v~IG~~~~Ig~~s~V 273 (341)
T 3eh0_A 230 IIDNQCQIAHNVVIGDNTAVAGGVIMAGS-LKIGRYCMIGGASVI 273 (341)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTT-EEECTTCEECTTCEE
T ss_pred EECCCCEEeCCcEECCCCEECCCCEECCC-cEECCCcEEcCCCEE
Confidence 66666666555555555555556666556 889999999999875
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=117.71 Aligned_cols=129 Identities=18% Similarity=0.307 Sum_probs=90.2
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADR 448 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~ 448 (521)
+......+...+.+.|++.+. .++.||++|.|+. |.|. ++.||++|.|+++|.|..+..... .....
T Consensus 15 ~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~----~~~~~ 86 (189)
T 3r1w_A 15 YQGISPKLGERVFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDY----NPGGY 86 (189)
T ss_dssp BTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSS----STTCB
T ss_pred ccCcCCEECCCcEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccC----CCCCC
Confidence 445556777888888888774 3677888888876 7775 359999999999999977521110 00112
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+.||++ +.||+++.|.+++||++|.||.+++|.. +.+++++++|++| ++|.++..|+++++
T Consensus 87 ~~~Ig~~---~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~------~v~Ig~~~~Ig~~-s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 87 PLIIGDD---VTIGHQAMLHGCTIGNRVLIGMKSMIMD------GAIVEDEVIVAAG-ATVSPGKVLESGFV 148 (189)
T ss_dssp CEEECSS---EEECTTCEEESCEECSSEEECTTCEECT------TCEECSSCEECTT-CEECTTCEECTTEE
T ss_pred CeEECCC---CEECCCCEEeCcEECCCcEECCCCEEcC------CCEECCCCEEccC-CEECCCCEeCCCCE
Confidence 3333334 4889999998889999999998888875 4566777777777 66666677776665
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=116.72 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=84.0
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEcc-----eEEECCcccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIED-----TLLMGADYYE 443 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~-----s~i~~~~~~e 443 (521)
|.++...+..++.+.|++.+. .++.||++|.|+. +.|.. +.||++|.|+++|.|.. +++.++
T Consensus 6 ~~~~~~~i~~~~~I~~~a~i~----g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~---- 77 (173)
T 1v3w_A 6 INGKKPRIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY---- 77 (173)
T ss_dssp BTTBCCEECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS----
T ss_pred cCCCCCEECCCCEECCCCEEe----CCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC----
Confidence 445556677777788877763 3677888888876 76663 89999999999999974 344333
Q ss_pred ccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 444 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 444 ~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+.|++++.|.+++|+++|.||.++.|.+. ++++++++|+++ ++|.++..||++++
T Consensus 78 ---------------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~------~~Ig~~~~Ig~~-s~V~~~~~i~~~~~ 132 (173)
T 1v3w_A 78 ---------------VTIGHNAMVHGAKVGNYVIIGISSVILDG------AKIGDHVIIGAG-AVVPPNKEIPDYSL 132 (173)
T ss_dssp ---------------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTT-CEECTTCEECTTEE
T ss_pred ---------------CEECCCCEECCCEECCCCEECCCCEEeCC------CEECCCCEECCC-CEECCCcEeCCCcE
Confidence 48999999999999999999999998875 445555555555 44444444444443
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=131.60 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=139.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHhC--------C------CceEEEEecCChHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS--------N------ISKIYVLTQFNSASL 150 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~~--------g------i~~I~Iv~~~~~~~i 150 (521)
.++.+||||||.||||+ ...||+|+||+ |+ |+|+++++.+... | |..+++...+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 37999999999999995 67899999998 76 9999999999875 6 778888888888999
Q ss_pred HHHHHHhhhccCCCC----cCCCcEEEeeccc--C----CCCCC-CCCChHHHHHHHH-----HHhhhcCcceEEEEeCC
Q 009971 151 NRHLSRAYASNMGGY----KNEGFVEVLAAQQ--S----PENPN-WFQGTADAVRQYL-----WLFEEHNVLEFLVLAGD 214 (521)
Q Consensus 151 ~~~l~~~~~~~~~~~----~~~~~v~vl~~~q--~----~~~~~-~~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD 214 (521)
.+||++...+++... |.+..+..+.... . +.... .+.|+++.+.... +.+.....+++.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 999988544443210 1111111111100 0 00001 2579988776542 22333356789999999
Q ss_pred e-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCC-CC--CeEEeeeCCChhhhhhcccccccccCCchh
Q 009971 215 H-LY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDER 289 (521)
Q Consensus 215 ~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~-~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~ 289 (521)
. +. ..|. .++..|.++++++++.+.+... .....|++...+ +| +|++|.|+|...... . +.. ..
T Consensus 258 N~l~~~~Dp-~~lg~~~~~~~~~~~~vv~k~~-~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~-~--~~~------~~ 326 (486)
T 2yqc_A 258 NCLVKVADP-IFIGFAIAKKFDLATKVVRKRD-ANESVGLIVLDQDNQKPCVIEYSEISQELANK-K--DPQ------DS 326 (486)
T ss_dssp BTTCCTTCH-HHHHHHHHHTCSEEEEEEECCS-TTCCCCEEEEETTTTEEEEECGGGSCHHHHHC-E--ETT------EE
T ss_pred CceeeccCH-HHHHHHHHcCCCEEEEEEEcCC-CCCceeEEEEEecCCCEEEEEEecCCHHHhhc-c--ccc------cc
Confidence 8 44 3553 5788999999999988876532 224677776431 34 588998988643211 0 000 00
Q ss_pred hccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 290 AKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 290 ~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
.....+..++++|+|+.+++.+++..
T Consensus 327 ~~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 327 SKLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccccccceeEEEEEEeHHHHHHHHHh
Confidence 01123588999999999999874543
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-11 Score=123.57 Aligned_cols=210 Identities=13% Similarity=0.122 Sum_probs=141.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHh-------------CCCceEEEEecCChHHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN-------------SNISKIYVLTQFNSASLN 151 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~-------------~gi~~I~Iv~~~~~~~i~ 151 (521)
.++.+|+||||.||||+ ...||+|+|| .|+ |++++.++.+.. .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 47999999999999996 4799999999 776 999999988853 567766666677789999
Q ss_pred HHHHHhhhccCCC----CcCCCcEEEeeccc-----CCCCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCe-
Q 009971 152 RHLSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDH- 215 (521)
Q Consensus 152 ~~l~~~~~~~~~~----~~~~~~v~vl~~~q-----~~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~- 215 (521)
+|+++...|++.. .|.+..+..+.... .+....| +.|+++.+.... +.+.+...+++++.+.|.
T Consensus 110 ~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~ 189 (405)
T 3oc9_A 110 NYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNI 189 (405)
T ss_dssp HHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBT
T ss_pred HHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCc
Confidence 9999855454321 01111111110000 0001112 578888776532 223333457899999999
Q ss_pred eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe-CCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCC
Q 009971 216 LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP 294 (521)
Q Consensus 216 l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~-d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
|.......++..|.++++++++-+.+.... ....|.+.. |...+|++|.|.|+. . ..-..+. ....
T Consensus 190 L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e-~-e~~~~~g----------~l~f 256 (405)
T 3oc9_A 190 LCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDE-L-NKQLSNG----------EFIY 256 (405)
T ss_dssp TCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTT-T-TCBCTTS----------CBSS
T ss_pred ccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHH-H-hhcCCCC----------ceee
Confidence 888888889999999999999888775432 246777764 544589999988775 2 1100000 1113
Q ss_pred ceeeEEEEEEeHHHHHHHHh
Q 009971 295 YIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 295 ~l~~~GIyifs~~vl~~ll~ 314 (521)
+..+.++++|+.++|+++.+
T Consensus 257 n~~Ni~~h~fs~~fL~~i~~ 276 (405)
T 3oc9_A 257 NCGHISINGYSTSFLEKAAE 276 (405)
T ss_dssp CEEEEEEEEEEHHHHHHHTT
T ss_pred ccceeEeeecCHHHHHHhhh
Confidence 46789999999999987763
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-12 Score=123.49 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred CCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEE-------------e-eeEECCCCEECCCCEEcc------
Q 009971 377 RSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKI-------------H-HSVVGLRSCISEGAIIED------ 433 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I-------------~-~s~ig~~~~Ig~~~~I~~------ 433 (521)
+.+.|...+.+.+.+.+. ++.| .++.||++|.|+. |.| . +++||++|.|+++|.|..
T Consensus 23 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 102 (259)
T 3hsq_A 23 PYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDS 102 (259)
T ss_dssp TTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTB
T ss_pred CCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCC
Confidence 333333333344444333 3333 3477777777776 666 3 678888888888887762
Q ss_pred -eEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 434 -TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 434 -s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
..+.++.+.. ..+.++.++ .||+++.|. ++.+..+++||++|+|.....+....+++++++|+.+
T Consensus 103 ~~~IG~~~~I~----~~~~I~~~~---~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~ 169 (259)
T 3hsq_A 103 PTVIGNKNYFM----GNSHVGHDC---ILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGL 169 (259)
T ss_dssp CEEECSSCEEC----TTCEECTTC---EECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSS
T ss_pred cEEECCCcEEc----CCcEECCCc---EECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCC
Confidence 2222211110 123333333 555566555 5566666667777777666666667777777777777
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=118.45 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=12.4
Q ss_pred eecCCeEEcCCeEEECCCCEECCCcc
Q 009971 495 RETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 495 ~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+|.++.|..| ++||++++|++||+
T Consensus 110 ~IG~~~~I~~g-~~Ig~~~~Igagsv 134 (192)
T 3mqg_A 110 TLGANCTVVCG-ATIGRYAFVGAGAV 134 (192)
T ss_dssp EECTTCEECTT-CEECTTCEECTTCE
T ss_pred EECCCCEECCC-CEECCCCEEcCCCE
Confidence 33334444444 55555555555554
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=114.47 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred ceEEC--CCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCC
Q 009971 400 DSVIG--EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNA 476 (521)
Q Consensus 400 ~~~Ig--~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~ 476 (521)
++.|| ++|+|++ +++|+.+++||++|.|.....++++ +.||++++|. ++.|..++
T Consensus 87 ~~~Ig~~~g~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~------------------~~Ig~~~~I~~~~~i~~~~ 144 (194)
T 3bfp_A 87 SAIVEENAGILIMP----YVVINAKAKIEKGVILNTSSVIEHE------------------CVIGEFSHVSVGAKCAGNV 144 (194)
T ss_dssp TCEECTTSCCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTC
T ss_pred CceeCCCCCcEEcC----CCEECCCCEECCCCEECCCCEEcCC------------------CEECCCCEECCCCEECCCc
Confidence 34566 6666664 3344444555555544433333321 3555555555 45555556
Q ss_pred EECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 477 RIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 477 ~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+||++++|.....+.++.+++++++|++|
T Consensus 145 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igag 173 (194)
T 3bfp_A 145 KIGKNCFLGINSCVLPNLSLADDSILGGG 173 (194)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred EECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 66666666554434444555555555555
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=117.36 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=85.9
Q ss_pred cccCCCCcCCCceeecccccceEECCCcEEce-eEEe-----eeEECCCCEECCCCEEcce---EEECCccccccccccc
Q 009971 380 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRF 450 (521)
Q Consensus 380 ~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-----~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~ 450 (521)
.+...+.+.+.+.+. .++.||++|.|+. |.|. +++||++|.|+++|.|..+ ..++.+ .....+
T Consensus 41 ~i~~~~~I~~~a~i~----~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~----~~~~~~ 112 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLI----GDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDD----GQEYSV 112 (213)
T ss_dssp EECTTCEECTTSEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTT----SCEESE
T ss_pred cCCCCCEECCCCEEe----CceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccC----Ccccce
Confidence 344445555555542 4577888888887 7775 3799999999999999741 122211 001235
Q ss_pred cccCCCcceeeCCCCEEee-eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 451 LAAKGSVPIGIGKNSHIKR-AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~-~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.||+++ .|++++.|.+ ++|+++|.||.+++|.+ ..+++.+.++.+++| .+ ++|++++.|++|++|
T Consensus 113 ~IG~~v---~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~-~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 113 WIGDNV---SITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QD-VEIPPGKYVPSGMVI 178 (213)
T ss_dssp EECTTC---EECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ES-CEECTTBEECTTCEE
T ss_pred EECCCc---EECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CC-cEeCCCCEECCCcEE
Confidence 555555 7888888885 99999999999999975 444555555555554 23 457888888888864
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=123.10 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=24.5
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++||+++.|+.++.|.....+++.+.++.++.+..+ ++||++++|+++++
T Consensus 126 ~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~-v~Igd~~~Ig~~a~ 175 (283)
T 4eqy_A 126 TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGH-VEIGDWAIVGGMSG 175 (283)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred eEECCCcEECceeEEcCCcEECCCcEECCCceEcCC-cEECCCeEEecCCE
Confidence 445555555555544444444444444444444444 55555555555554
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=130.27 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=22.2
Q ss_pred hhcchHhhhhCCceEEEEEecce-----EEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGY-----WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~-----w~dIgt~edy~~An~~ll 364 (521)
..++|..|-+.+.++..+ .++. |.+......|......+.
T Consensus 73 ~~~~~~~l~~~~~rva~~-~~~~~~~~~w~k~~ill~f~~~~~~~i 117 (316)
T 3tk8_A 73 VAHAIEQLDRGALRVAEK-IDGAWTVHQWLKKAVLLSFRLEDNAPM 117 (316)
T ss_dssp HHHHHHHHHTTSSCSEEE-ETTEEEECHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHhCCCEEeee-ccchHHHHHHHHHHHHHhhhhcccccc
Confidence 467777777766777776 3443 444444555444443333
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=120.53 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=21.5
Q ss_pred eCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 461 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 461 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
||+++.|. ++.+..+++||++++|.....+....+++++++|+.+
T Consensus 129 Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~ 174 (262)
T 2qia_A 129 VGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGC 174 (262)
T ss_dssp ECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS
T ss_pred ECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccC
Confidence 34444443 3444444444555555444444455555555555555
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=120.34 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=21.5
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++.|. ++.+..+++||++|+|.....+.+..+++++++|+.+
T Consensus 130 ~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~ 176 (265)
T 4e6u_A 130 IVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGA 176 (265)
T ss_dssp EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred EECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCC
Confidence 344444443 3444444444444444444444444555555555555
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=119.58 Aligned_cols=50 Identities=14% Similarity=-0.006 Sum_probs=19.9
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++||+++.|+.++.+.....+++.+.++.++.+..+ ++||++++|+++++
T Consensus 109 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~-v~Igd~~~Ig~~a~ 158 (266)
T 3r0s_A 109 TRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGH-VELGDFTVVGGLTP 158 (266)
T ss_dssp EEECTTCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred EEECCCceeCCcceEccccccCCCeEECCCceecCC-eEECCCcEEccCCE
Confidence 344444444444444333333333333333333333 44444444444443
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-12 Score=125.01 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=25.9
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCC-------EECCCcc
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA-------LIPSGTI 520 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~-------~i~~gsv 520 (521)
++||++|.||.+++|.....+++++.++.|++|..+ ++|++++ .||++++
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~-~~I~~~~~~~~~~g~Vp~~sv 234 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS-TRIYDRETGEVHYGRVPAGSV 234 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCC-cEEccccccceeccccCCCcE
Confidence 556666666666655554444444444444444444 4444444 5666655
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=113.22 Aligned_cols=102 Identities=16% Similarity=0.320 Sum_probs=82.3
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe------
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------ 468 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~------ 468 (521)
...||++|.|.. +.|. ++.||++|.|+++|.|... +.+++ + +.|++++.|.
T Consensus 33 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~---------------~---~~I~~~~~I~~~~~~g 94 (191)
T 3ixc_A 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGE---------------G---TNIQDNTVVHTDSMHG 94 (191)
T ss_dssp CCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEECC----C
T ss_pred CCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECC---------------C---CEECCCCEEeecCCcC
Confidence 356777777776 6665 7899999999999999743 24443 2 4899999997
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++|+++|.||+++.+.+ ..+++.+.++.+++|..+ ++||++++|++|++|
T Consensus 95 ~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 95 DTVIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLL 145 (191)
T ss_dssp CEEECTTCEECTTCEECS-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CeEECCCCEECCCCEEEC-CEECCCCEECCCCEEeCC-eEECCCCEECCCCEE
Confidence 899999999999999865 677888888888888888 889999999998875
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=114.43 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
++.||++|.|+. |.|. ++.||++|.|+++|.|.
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~ 86 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALY 86 (205)
T ss_dssp GEEECSSEEECTTCEEEEEEEECSSEEECTTCEEE
T ss_pred eeEECCCCEECCCCEEccceEECCCCEECCCeEEE
Confidence 455666666665 5555 56777777777777763
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=118.81 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=28.0
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s 434 (521)
|++++.+.|++.+. .++.|+++|+|+. |.|. ++.||++|.|+++|.|++.
T Consensus 5 i~~~~~I~~~a~I~----~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~ 56 (273)
T 3fs8_A 5 ISKSAIIKEGVIIG----ENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEY 56 (273)
T ss_dssp ECTTCEECTTCEEC----SSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEEC
T ss_pred cCCCeEECCCcEEC----CCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCc
Confidence 44445555555542 2344555555554 4444 5667777777777776653
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=122.62 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=70.7
Q ss_pred cccC-CCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--cc
Q 009971 374 FYDR-SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RR 449 (521)
Q Consensus 374 ~~~~-~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~ 449 (521)
|+++ ++.+..++.+.+++.+. .+++||++|.|++ |.|.+|+||+++.|+++++|+++++.++.....++. .+
T Consensus 60 ~I~~~~a~I~~~a~I~~~~~I~----g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~ 135 (334)
T 2pig_A 60 WIYDENAMAFAGTEITGNARIT----QPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQ 135 (334)
T ss_dssp EECCTTCEEETTCEECTTCEEE----SSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred EEcCCCeEEcCCcEECCCcEEe----eeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence 4444 45555555555555542 3466777777776 777777777777777777777776665543211111 22
Q ss_pred ccccCC-------CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 450 FLAAKG-------SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 450 ~~~~~~-------~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+.+..+ ...+.|+++++|.+++|+++|+|+.++.|. ...+.+...++++++|.++
T Consensus 136 s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~ 197 (334)
T 2pig_A 136 SEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGD 197 (334)
T ss_dssp CEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECC
T ss_pred EEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCc
Confidence 222221 112356666666666666666666666665 3444555555555555433
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=130.78 Aligned_cols=122 Identities=12% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCcccCCCCcCCCceeeccc------------ccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccc
Q 009971 378 SAPIYTQPRYLPPSKMLDAD------------VTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYE 443 (521)
Q Consensus 378 ~~~i~~~~~~~~~~~i~~~~------------i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e 443 (521)
...|...+.+.+++.+.++. +.++.||++|.|+. |.|. ++.||+++.||++|.|.++++..+....
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 365 (459)
T 4fce_A 286 HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAG 365 (459)
T ss_dssp EEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEE
T ss_pred ceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEEC
Confidence 34445555566666555433 34455666666665 6665 5667777777777777666665543221
Q ss_pred cccc-ccccccCCCcceeeCCCCEEee--------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEE
Q 009971 444 TDAD-RRFLAAKGSVPIGIGKNSHIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 508 (521)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~Ig~~~~i~~--------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~ 508 (521)
.... ..+.||+++ .||+++.+.+ ++||++|.||.+++|. .+.+||++++|++|.++
T Consensus 366 ~~~~i~~~~Ig~~~---~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~------~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 366 HLSYLGDAEIGAGV---NIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLV------APVTVANGATIGAGTTV 430 (459)
T ss_dssp EEEEEEEEEECTTC---EECTTCEEECBCSSCBCCEEECTTCEECTTCEEE------SSEEECTTCEECTTCEE
T ss_pred CceEECCeEECCCC---EECCCCEEeccccccCCCCEECCCeEEcCCCEEc------CCcEECCCCEECCCCEE
Confidence 1111 234555555 5666666642 5666666666666665 46778888888888433
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-11 Score=108.09 Aligned_cols=101 Identities=20% Similarity=0.343 Sum_probs=81.6
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe-----ee
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RA 470 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ 470 (521)
..|++++.|.. +.|. ++.||++|.|+++|.|.+. +.+++ + +.|+++++|. ++
T Consensus 13 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~---------------~---~~I~~~~~I~~~~~~~~ 74 (173)
T 1xhd_A 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGD---------------R---VNVQDQCTLHQSPQYPL 74 (173)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECCTTCCE
T ss_pred CEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECC---------------C---CEECCCCEEEeCCCCCe
Confidence 45677777765 5554 7899999999999999764 44443 3 4899999998 79
Q ss_pred EECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 471 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 471 ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+|++++.||.++.|.+ ..+++.+.++.++.|..+ ++||++++|++|++|
T Consensus 75 ~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 75 ILEDDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (173)
T ss_dssp EECTTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEeC-CEECCCCEEcCCCEEcCC-CEECCCCEECCCCEE
Confidence 9999999999999965 567777888888888888 899999999999875
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=128.82 Aligned_cols=122 Identities=13% Similarity=0.185 Sum_probs=77.9
Q ss_pred ccCCCcccCCCCcCCCceeec-----------ccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcc
Q 009971 375 YDRSAPIYTQPRYLPPSKMLD-----------ADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY 441 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~~-----------~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~ 441 (521)
+.+...|...+.+.+.+.+.+ +.+.+++||++|.|+. |.|. +++||.++.||++|.|.++++..+..
T Consensus 289 i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~ 368 (468)
T 1hm9_A 289 LKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTK 368 (468)
T ss_dssp EESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCE
T ss_pred ECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcE
Confidence 344455555556666665543 3345678888888887 7777 78888888888888888777766533
Q ss_pred cccccc-ccccccCCCcceeeCCCCEEee--------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 442 YETDAD-RRFLAAKGSVPIGIGKNSHIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 442 ~e~~~~-~~~~~~~~~~~~~Ig~~~~i~~--------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
...... ..+.||+++ .||.++.+.+ ++||++|.||.++.|.. +.++|++++|++|
T Consensus 369 i~~~~~i~~~~Ig~~~---~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~------~v~Ig~~~~i~~~ 432 (468)
T 1hm9_A 369 AGHLTYIGNCEVGSNV---NFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIA------PVELGDNSLVGAG 432 (468)
T ss_dssp EEEEEEEESEEECTTC---EECTTCEEECBCSSCBCCEEECTTCEECTTCEEES------SCEECTTCEECTT
T ss_pred eCCceEEccccccCCc---EECCCcEEecCcCccCCCcEECCCeEECCCCEEeC------CcEECCCCEECCC
Confidence 221110 234556555 6666666643 66666666666666654 5667777777777
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=118.41 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred cCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccccccc
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 451 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~ 451 (521)
++.+.|.+.+.+.|.+++. ++.| ..++|+++++|++ |.|. +++|+.++.||++|.|.....++.+ ....+.
T Consensus 5 ~~~~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d-----~~g~~~ 79 (305)
T 3t57_A 5 DSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDE-----LPGYTF 79 (305)
T ss_dssp ----CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCS-----SSEEEE
T ss_pred CCCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccC-----CCCceE
Confidence 4555666666666666654 3333 2244444444443 4444 4444444555555555444444321 012355
Q ss_pred ccCCCcceeeCCCCEE
Q 009971 452 AAKGSVPIGIGKNSHI 467 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i 467 (521)
||+++ .|++++.|
T Consensus 80 IG~~~---~Ig~~a~I 92 (305)
T 3t57_A 80 IGCNN---IIGHHAVV 92 (305)
T ss_dssp ECSSC---EECTTCEE
T ss_pred ECCce---EECCccEe
Confidence 55555 55555555
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=108.74 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=81.3
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceE---EECCccccccccccccccCCCcceeeCCCCEE--------
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTL---LMGADYYETDADRRFLAAKGSVPIGIGKNSHI-------- 467 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~---i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-------- 467 (521)
..||+++.|.. +.|. ++.||++|.|++++.|.... .+++ + +.|++++.|
T Consensus 16 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~---------------~---~~I~~~~~I~~~~~~~~ 77 (187)
T 3r3r_A 16 PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGA---------------R---TNIQDGSVLHVTHKSSS 77 (187)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECBCCBTT
T ss_pred cccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECC---------------C---CEECCCCEEecCCcccc
Confidence 45677777765 5555 78999999999999998542 4443 2 489999999
Q ss_pred ----eeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 468 ----KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 468 ----~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.+++|++++.||.++.|.+ ..+++.+.++.+++|..+ ++||++++|++|++|
T Consensus 78 ~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 78 NPHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLV 133 (187)
T ss_dssp BC-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred CCCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 6899999999999999975 677888888888888888 889999999998875
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=108.86 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=75.9
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc---eEEECCccccccccccccccCCCcceeeCCCCEEe------
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED---TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------ 468 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~---s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~------ 468 (521)
++.|+++++|.. |.|. ++.||++|.|+++|+|.. .+.+| +++ .|+++++|.
T Consensus 12 ~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG---------------~~~---~I~~~~~I~~~~~~~ 73 (194)
T 3tv0_A 12 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIG---------------EGN---LIEEQALIINAYPDN 73 (194)
T ss_dssp CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEEC---------------TTC---EECTTCEEEECCCSC
T ss_pred CCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEEC---------------CCc---cccCCcccccccccc
Confidence 466777777776 6666 788888888888888742 23333 233 566666663
Q ss_pred -----------eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 -----------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 -----------~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.++|++++.|+.++.+. ...+++.+.++.++.|+.| ++||++|+|++|++|
T Consensus 74 ~~~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV 135 (194)
T 3tv0_A 74 ITPDTEDPEPKPMIIGTNNVFEVGCYSQ-AMKMGDNNVIESKAYVGRN-VILTSGCIIGACCNL 135 (194)
T ss_dssp C---------CCEEECSSCEECTTCEEC-CSEECSSCEECTTCEECTT-EEECSSCEECTTCEE
T ss_pred cccccccCcCCceEECCcceEecceeEe-eeeecccceecceeeECCe-EEECCCCEECCCCEE
Confidence 36788888888888875 4567888888889999999 999999999999875
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=113.38 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=55.6
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe----eeEECCCCEECCCcEEe------
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----RAIIDKNARIGDNVKIV------ 485 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~----~~ii~~~~~Ig~~~~i~------ 485 (521)
+..||++|.|+++|.|...+.+|+. +.|++++.|. +++||++|.||+++.|.
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~ 113 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF 113 (205)
T ss_dssp GEEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred eeEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence 4677777777777777665555542 4677777772 37777777777777772
Q ss_pred -------------------CCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 486 -------------------NSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 486 -------------------~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
....+++.+.+|.++.|..| ++||++|+|++|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-v~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 114 SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN-VVIGEGVAVGAMSMV 167 (205)
T ss_dssp SSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS-CEECTTCEECTTCEE
T ss_pred ccccccCcccccccceeccCCEEECCCCEECCCCEEcCC-CEECCCCEEcCCCEE
Confidence 33334444555555555555 666677777776654
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=107.95 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=80.8
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEeee-----
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRA----- 470 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~----- 470 (521)
..||+++.|.. +.|. ++.||++|.|+++|.|... +.+|+ + +.|++++.|..+
T Consensus 20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~---------------~---~~I~~~~~I~~~~~~~~ 81 (189)
T 3r1w_A 20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGA---------------R---TSVQDGSVLHITHASDY 81 (189)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECBCCSSS
T ss_pred CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECC---------------C---CEECCCCEEecCCcccC
Confidence 34666666665 5555 7899999999999999733 34443 2 488999998654
Q ss_pred -------EECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 471 -------IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 471 -------ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+|+++|.||+++.|.+ ..+++.+.++.+++|..+ ++||++++|++|++|
T Consensus 82 ~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 82 NPGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDG-AIVEDEVIVAAGATV 137 (189)
T ss_dssp STTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred CCCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCC-CEECCCCEEccCCEE
Confidence 9999999999999976 778888888888888888 889999999999875
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-11 Score=118.66 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred ccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEc-ceEEECC----------cc
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGA----------DY 441 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~----------~~ 441 (521)
+++.+.|...+.+.+.+++. ++.|.+++|++++.|++ +.|.+++|+.+|.|+.++++. ++.++++ .+
T Consensus 74 I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~ 153 (334)
T 2pig_A 74 ITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQ 153 (334)
T ss_dssp ECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEE
T ss_pred ECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeE
Confidence 34444444444444444444 55667888888888886 888888888888887777665 3444443 11
Q ss_pred -ccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 442 -YETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 442 -~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
++......+.+++++ .|+.++.|.+++|++++.|++++.+..
T Consensus 154 I~~~a~I~~s~I~~g~---~I~~~a~I~~svI~~~a~I~~~a~V~~ 196 (334)
T 2pig_A 154 IYDRATVNHSRIVHQV---QLYGNATITHAFIEHRAEVFDFALIEG 196 (334)
T ss_dssp ECTTCEEESCEEETTC---EECTTCEEESEEECTTCEECTTCEEEC
T ss_pred ECCCCEEeccEEcCCC---EEcCCeEEeCcEEcCCCEECCCcEECC
Confidence 111122345566666 677777777777777777777766654
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-10 Score=116.34 Aligned_cols=58 Identities=24% Similarity=0.168 Sum_probs=27.9
Q ss_pred cccCCCcccCCCCcCCCceee-ccccc-ceEECCCcEEce-eEEe-eeEECCCCEECCCCEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 431 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i~-~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I 431 (521)
.+++.+.+..++.+.+++.+. ++.|. ++.||++|.|+. |.|. ++.||++|.|+++|+|
T Consensus 126 ~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I 187 (374)
T 2iu8_A 126 GIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVI 187 (374)
T ss_dssp SBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEE
Confidence 345555555555555555553 33332 455555555553 4443 3444444444444444
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=126.11 Aligned_cols=143 Identities=21% Similarity=0.241 Sum_probs=78.5
Q ss_pred cccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEEC-Ccccccccc-cc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RR 449 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~-~~~~e~~~~-~~ 449 (521)
++++.+.|...+.++..+.+. ++.|.++.||++|.|+. |.|.+++||++|.|++++.|...+.++ +........ .+
T Consensus 273 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~ 352 (456)
T 2v0h_A 273 EIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKK 352 (456)
T ss_dssp EECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEES
T ss_pred EEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEec
Confidence 334444444444445555544 44556788888888886 777778888888888777776433333 222111111 22
Q ss_pred ccccCCCc--------ceeeCCCCEEe-eeEECC-------CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCC
Q 009971 450 FLAAKGSV--------PIGIGKNSHIK-RAIIDK-------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA 513 (521)
Q Consensus 450 ~~~~~~~~--------~~~Ig~~~~i~-~~ii~~-------~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~ 513 (521)
+.++++.. ++.||+++.|. +++|.. +++||++|+|+....+..+.+++++++|++| .+|.++
T Consensus 353 ~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~-s~v~~~- 430 (456)
T 2v0h_A 353 STVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAG-TTITRD- 430 (456)
T ss_dssp CEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTT-CEECSC-
T ss_pred cEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCC-CEECCC-
Confidence 33333321 23556666554 444432 4555555555555555556788888888888 444333
Q ss_pred EECCCc
Q 009971 514 LIPSGT 519 (521)
Q Consensus 514 ~i~~gs 519 (521)
|++++
T Consensus 431 -v~~~~ 435 (456)
T 2v0h_A 431 -VGENE 435 (456)
T ss_dssp -BCTTC
T ss_pred -cCCCC
Confidence 44444
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=112.35 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=70.1
Q ss_pred cceEECCCcEEce-eEE-----eeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe----
Q 009971 399 TDSVIGEGCVIKN-CKI-----HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK---- 468 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I-----~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~---- 468 (521)
.++.|++++.|.. +.+ ....||++|.|++++.|... ..+.||+++ .|+++++|.
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g-------------~~v~IG~~~---~Ig~~~~I~~~~~ 125 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKG-------------SKVIIGRRT---TIGAGFEVVTDKC 125 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESS-------------CEEEECTTC---EECTTCEEECSSS
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccC-------------CEEEECCCC---EECCCcEEEeCCC
Confidence 4578888888876 444 23455555555555555310 123444454 788888887
Q ss_pred eeEECCCCEECCCcEEeCCC-------------------ccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 RAIIDKNARIGDNVKIVNSD-------------------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~-------------------~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.||++|.||++|+|.+.+ .+++.+.+|.++.|..| ++||++|+|++||+|
T Consensus 126 ~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~g-v~IG~~~~IgagsvV 196 (252)
T 3jqy_B 126 NVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKG-VSVGSGSVIGYGSIV 196 (252)
T ss_dssp EEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTT-CEECTTCEECTTCEE
T ss_pred CeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCC-CEECCCCEECCCCEE
Confidence 88999999999999998762 34445555555555555 778888888888764
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-10 Score=103.81 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=76.8
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe-----ee
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RA 470 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ 470 (521)
..|++++.|.. +.+. ++.||++|.|++++.|.+. +.+++ + +.|+++++|. ++
T Consensus 11 ~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~---------------~---~~I~~~~~I~~~~~~~~ 72 (173)
T 1v3w_A 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGK---------------Y---SNVQDNVSIHTSHGYPT 72 (173)
T ss_dssp CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECBTTBCE
T ss_pred CEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECC---------------C---CEECCCcEEEecCCCCe
Confidence 34666666665 5554 7899999999999998763 33333 3 4788999987 58
Q ss_pred EECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 471 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 471 ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+|++++.|++++.|.+ ..+++.+.++.++.|..+ ++||++++|++|++|
T Consensus 73 ~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 121 (173)
T 1v3w_A 73 EIGEYVTIGHNAMVHG-AKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp EECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred EECCCCEECCCCEECC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 9999999999999864 566777777777777777 888888888888864
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-10 Score=105.82 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=54.9
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRR 449 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~ 449 (521)
++++.+.|...+.+.+++.+. .+.+ .++.||++|.|+. +.|. ++.||++|.|++++.|.+.+.++++
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~--------- 75 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD--------- 75 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT---------
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC---------
Confidence 444555554444444444443 2222 3456666666654 5554 3555555555555555444333321
Q ss_pred ccccCCCcceeeCCCCEE----------------eeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 450 FLAAKGSVPIGIGKNSHI----------------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 450 ~~~~~~~~~~~Ig~~~~i----------------~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+.||+++.+ .+++|+++|.||.+++|... .+++++++|++|
T Consensus 76 ---------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g------~~Ig~~~~Igag 132 (192)
T 3mqg_A 76 ---------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCG------ATIGRYAFVGAG 132 (192)
T ss_dssp ---------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTT------CEECTTCEECTT
T ss_pred ---------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCC------CEECCCCEEcCC
Confidence 234444333 34666666666666666543 445555555555
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=118.94 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=80.7
Q ss_pred CCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccccccccc
Q 009971 377 RSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 453 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~ 453 (521)
+.+.|...+.+.+++.+. ++.| .+++||++|.|+. |.|.+++||+++.|++++.|+++++.++
T Consensus 255 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~-------------- 320 (401)
T 2ggo_A 255 SGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED-------------- 320 (401)
T ss_dssp TTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT--------------
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC--------------
Confidence 333333334444444443 4444 3688999999998 8888999999999999999988777665
Q ss_pred CCCcceeeCCCCEEee---------eEEC----------CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCE
Q 009971 454 KGSVPIGIGKNSHIKR---------AIID----------KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 514 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~---------~ii~----------~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~ 514 (521)
+.||++++|.+ +.++ .+++||++|+|.....+.++.++|++++|++| .+|-++
T Consensus 321 -----~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~g-svv~~~-- 392 (401)
T 2ggo_A 321 -----VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPG-AVVNRD-- 392 (401)
T ss_dssp -----CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTT-CEECSC--
T ss_pred -----cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCC-CeEccc--
Confidence 45666666641 2222 25566666666655555667788888888888 555554
Q ss_pred ECCCcc
Q 009971 515 IPSGTI 520 (521)
Q Consensus 515 i~~gsv 520 (521)
|+++++
T Consensus 393 vp~~~~ 398 (401)
T 2ggo_A 393 VGYGEF 398 (401)
T ss_dssp BCTTCE
T ss_pred cCCCcE
Confidence 566665
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-10 Score=106.92 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=11.1
Q ss_pred EEecCCHHHHHHHhhhcccC
Q 009971 347 WEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 347 w~dIgt~edy~~An~~ll~~ 366 (521)
+.-|++++...+....+...
T Consensus 75 ~iAIg~~~~R~~i~~~l~~~ 94 (220)
T 4ea9_A 75 FVAIGDNRLRQKLGRKARDH 94 (220)
T ss_dssp EECCCCHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHHHHhc
Confidence 44566766655555555443
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-11 Score=118.05 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=8.9
Q ss_pred eEECCCCEECCCCEEcceE
Q 009971 417 SVVGLRSCISEGAIIEDTL 435 (521)
Q Consensus 417 s~ig~~~~Ig~~~~I~~s~ 435 (521)
++||.+|.||++|.|....
T Consensus 171 ~~Ig~~~~IG~~v~I~~~~ 189 (304)
T 3eg4_A 171 ATVGSCAQIGKNVHLSGGV 189 (304)
T ss_dssp EEECTTCEECTTCEECTTC
T ss_pred cEECCCCccCCCcEECCCC
Confidence 4444444444444444433
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=114.15 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=6.6
Q ss_pred eEECCCCEECCCcEEe
Q 009971 470 AIIDKNARIGDNVKIV 485 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~ 485 (521)
++||++|.||.+++|.
T Consensus 203 v~IGd~v~IG~~a~I~ 218 (304)
T 3eg4_A 203 TIIEDNCFIGARSEVV 218 (304)
T ss_dssp CEECTTCEECTTCEEC
T ss_pred eEEcCCCEECCCCEEc
Confidence 3444444444444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-10 Score=106.42 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=68.1
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcce----EEECCccccccccccccccCCCcceeeCCCCEEee------
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR------ 469 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s----~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~------ 469 (521)
.|+++++|.. |.|. ++.||++|.|+++|.|.+. +.+|+ + +.|+++++|..
T Consensus 41 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~---------------~---~~Ig~~~~I~~~~~~~~ 102 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGS---------------R---TNIQDGVVIHGLQQGRV 102 (213)
T ss_dssp EECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECT---------------T---CEECTTCEEEECSSCCE
T ss_pred cCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECC---------------C---CEECCCCEEEecCCCce
Confidence 4555566655 4444 6899999999999988653 33332 3 37777777763
Q ss_pred ---------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 470 ---------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 470 ---------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++||+++.||.++.|.+...+++.+.+|.++.|. + ++||++|+|++|++|
T Consensus 103 ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~-~-~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 103 IGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVF-N-ARVGAGCVVMMHVLI 161 (213)
T ss_dssp ECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEE-E-EEECTTCEECSSCEE
T ss_pred eccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEe-C-cEECCCCEEcCCCEE
Confidence 7788888888887777555555555555555554 2 678888888888875
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=109.07 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=63.3
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 451 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~ 451 (521)
.+++.+.+...+.+.+++.+. .+++|+.+|.|++ |.|. +++|+.++.||++|+|+....+.+.....
T Consensus 93 ~I~~~a~I~~~v~Ig~~~~I~----~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~------- 161 (240)
T 3r8y_A 93 RIEPGAIIRDHVEIGDNAVIM----MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPP------- 161 (240)
T ss_dssp EECTTCEEBSSCEECTTCEEC----TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCT-------
T ss_pred EECCCCEECCCcEECCCCEEC----CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCC-------
Confidence 334444444444444444442 3344444444444 4444 55666666666666665444443321100
Q ss_pred ccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 452 AAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
..-|+.||+++.|. +++|.++++||++++|.....+.+. +.+++++...
T Consensus 162 ---~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~--vp~~~v~~G~ 211 (240)
T 3r8y_A 162 ---SAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTED--VPPYTVVAGT 211 (240)
T ss_dssp ---TSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEET
T ss_pred ---CCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCcEEEcc
Confidence 11236788888886 7888888888888888776555543 4555555444
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-10 Score=107.65 Aligned_cols=101 Identities=12% Similarity=0.169 Sum_probs=57.9
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceE----EECCccccccccccccccCCCcceeeCCCCEEe------
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTL----LMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------ 468 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~----i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~------ 468 (521)
..|+++++|.. |.|. ++.||++|.|+++|.|.+.. .+|+ + +.|+++++|.
T Consensus 60 ~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~---------------~---~~Ig~~~~I~~~~~~~ 121 (247)
T 1qre_A 60 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGD---------------R---SNVQDGVVLHALETIN 121 (247)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECT---------------T---CEECTTCEEEECCSBC
T ss_pred cEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECC---------------C---CEECCCeEEEeccccc
Confidence 34566666665 5554 67888888888888876542 3332 2 2555555554
Q ss_pred ------------------eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 ------------------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 ------------------~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++||+++.||+++.|.+...+++.+.+|.++.|.. ++||++++|++|++|
T Consensus 122 ~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 122 EEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 190 (247)
T ss_dssp TTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred ccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCEE
Confidence 266666666666666654334444444444444433 455666666665543
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=112.73 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=28.0
Q ss_pred eeCCCCEEee---------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 460 GIGKNSHIKR---------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 460 ~Ig~~~~i~~---------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
.|+++++|.. ++||++|.||.|++| +.+||++|+|++| ++|.+++.|
T Consensus 238 ~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--------GVtIGd~~iIGAG-SVVtkdt~I 293 (347)
T 3r5d_A 238 DLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--------GIPLGDRNIVEAG-LYITAGTKV 293 (347)
T ss_dssp EECTTCEECC------CCCCEECTTCEECTTCEE--------CSCBCTTCEECTT-CEECTTCEE
T ss_pred EECCCCEEccccCCCCccceEECCCCEECCCCEE--------eeEECCCCEECCC-CEECCCCEE
Confidence 5666666643 566667777776666 2455556666666 555555544
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=108.48 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=13.2
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.||++|.|. +|+|.++++||++|+|..
T Consensus 219 v~IGd~v~IG~~a~I~~gv~IG~g~vIga 247 (316)
T 3tk8_A 219 VIIEDNCFIGARSEVVEGVIVEENSVISM 247 (316)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred cEECCCCEECCCCEEcCCCEECCCCEEcC
Confidence 3445444443 444444444444444443
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=106.49 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=8.4
Q ss_pred EEECCCCEECCCccC
Q 009971 507 VTIIKDALIPSGTII 521 (521)
Q Consensus 507 v~I~~~~~i~~gsvi 521 (521)
++||++|+|++|++|
T Consensus 273 VtIGd~~iIGAGSVV 287 (347)
T 3r5d_A 273 IPLGDRNIVEAGLYI 287 (347)
T ss_dssp SCBCTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 455566666665553
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=106.70 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=50.5
Q ss_pred cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc---eEEECCccccccccccccccCCCcceeeCCCCEEee--
Q 009971 399 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED---TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-- 469 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~---s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-- 469 (521)
.++.||++|.|.+ +.|. +++||++|.|+++|.|.. .+.+++ + +.||++++|.+
T Consensus 84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~---------------~---~~Ig~~~~I~~~~ 145 (252)
T 3jqy_B 84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGH---------------D---CMIARDVILRASD 145 (252)
T ss_dssp CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECT---------------T---CEECSSEEEECSC
T ss_pred CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECC---------------C---CEEcCCcEEecCC
Confidence 4467777777776 6663 577777777777777763 222222 1 36666666654
Q ss_pred ------------------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 470 ------------------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 470 ------------------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++|+++|.||++++|.. ++++|++++|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~------gv~IG~~~~Igag 193 (252)
T 3jqy_B 146 GHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMK------GVSVGSGSVIGYG 193 (252)
T ss_dssp SSCEEETTTCBBCCCCCCEEECSSCEECSSEEECT------TCEECTTCEECTT
T ss_pred CcccccccccccccccCCeEEecCcEECCCCEECC------CCEECCCCEECCC
Confidence 36666666666666654 3455555555555
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=102.38 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=15.2
Q ss_pred eEECCCcEEce-eEEee----eEECCCCEECC
Q 009971 401 SVIGEGCVIKN-CKIHH----SVVGLRSCISE 427 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~ 427 (521)
+.||++|.|+. +.+.+ +.||++|.|++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~ 90 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGN 90 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECS
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECC
Confidence 56666666665 54442 55555555555
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-10 Score=110.00 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.6
Q ss_pred eeCCCCEEee---------eEECCCCEECCCcEE
Q 009971 460 GIGKNSHIKR---------AIIDKNARIGDNVKI 484 (521)
Q Consensus 460 ~Ig~~~~i~~---------~ii~~~~~Ig~~~~i 484 (521)
.|+.++.|.. ++||++|.||.|++|
T Consensus 215 ~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI 248 (332)
T 3fsy_A 215 DVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL 248 (332)
T ss_dssp EECTTCEECSBCC---CCBCEECTTCEECTTCEE
T ss_pred EECCCCEEcCCCCCCCccceEECCCCEECCCCEE
Confidence 5555555542 666666666666666
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=115.53 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=70.1
Q ss_pred cccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 451 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~ 451 (521)
++++.+.+...+.+++++.+. ++.|.+++||++|.|+. |.|.+++||++|.|++++.|.+++|.++
T Consensus 281 ~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~------------ 348 (496)
T 3c8v_A 281 SVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM------------ 348 (496)
T ss_dssp EECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET------------
T ss_pred EECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCC------------
Confidence 566666665566666666665 56667888899999987 8888889999999998888887776665
Q ss_pred ccCCCcceeeCCCCEEee-----eEECCCCEECCCcEEe
Q 009971 452 AAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKIV 485 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i~ 485 (521)
+.||++++|.. ++|+++|.||.++++.
T Consensus 349 -------v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~ 380 (496)
T 3c8v_A 349 -------IFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380 (496)
T ss_dssp -------CEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred -------cEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence 57888888873 4777777777777665
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=105.99 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=18.3
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETD 498 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~ 498 (521)
+.||++|.|. +|+|.++++||++|+|..+..+.++.++++
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~ 218 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYD 218 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEcc
Confidence 3444444443 444444444444444444444444444333
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=100.27 Aligned_cols=9 Identities=33% Similarity=0.065 Sum_probs=4.3
Q ss_pred EEecCCHHH
Q 009971 347 WEDIGTIEA 355 (521)
Q Consensus 347 w~dIgt~ed 355 (521)
-.+.+.++.
T Consensus 123 p~~~~~f~~ 131 (332)
T 3fsy_A 123 PCAIDGFEA 131 (332)
T ss_dssp EEESTTHHH
T ss_pred ccchhHhHH
Confidence 345555544
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-09 Score=98.35 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.9
Q ss_pred cCCCCcCCCceeecccc-cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcceE
Q 009971 382 YTQPRYLPPSKMLDADV-TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 435 (521)
Q Consensus 382 ~~~~~~~~~~~i~~~~i-~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~ 435 (521)
...+.+.+|... .+ .++.||++|+|+. |.|. ..+||++|.||++|.|....
T Consensus 60 g~~~~I~~p~~~---~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~ 115 (195)
T 3nz2_A 60 GHKSCVQPPFHC---EFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTAS 115 (195)
T ss_dssp CTTCEECSSEEE---SCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEE
T ss_pred CCCcEEcCCeEE---EeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCC
Confidence 344555565432 12 3678888888886 7775 35899999999999997655
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=96.45 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=9.0
Q ss_pred eeEECCCCEECCCcEEeC
Q 009971 469 RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~ 486 (521)
+++||++|.||+++.|.+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECTTEEEES
T ss_pred CEEECCCCEEcCCEEEEC
Confidence 344555555555555543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=94.09 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=13.5
Q ss_pred ECCCcEEce---eEEe-eeEECCCCEECCCCEE
Q 009971 403 IGEGCVIKN---CKIH-HSVVGLRSCISEGAII 431 (521)
Q Consensus 403 Ig~~~~I~~---~~I~-~s~ig~~~~Ig~~~~I 431 (521)
+++++.|.. |.+. ++.||+++.|+++|.|
T Consensus 59 ig~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i 91 (195)
T 3nz2_A 59 LGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVM 91 (195)
T ss_dssp ECTTCEECSSEEESCSTTEEECTTCEECTTEEE
T ss_pred cCCCcEEcCCeEEEeCCCeEECCCcEECcCCEE
Confidence 556666654 2222 3444444444444444
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.5e-09 Score=96.54 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=35.0
Q ss_pred CCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcceE
Q 009971 383 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 435 (521)
Q Consensus 383 ~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~ 435 (521)
..+.+.+|..+.. -.++.||++|+|+. |.|. .++||++|.||++|.|..+.
T Consensus 59 ~~~~i~~~~~~~~--g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~ 113 (199)
T 3ftt_A 59 DNVSISIPFDTDY--GWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTAT 113 (199)
T ss_dssp SSEEECSSEEESS--STTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEE
T ss_pred CCeEEeCCEEEEe--cCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCC
Confidence 3445555555421 13577888888886 7775 36999999999999996554
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-09 Score=101.43 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=17.6
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+++||++|.||.+++|.+ +++||++++|++|
T Consensus 119 ~v~IG~~v~IG~~a~I~~------gv~IG~gavIgag 149 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMP------GVKIGDGAIIAAE 149 (220)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CeEECCCcEECCCCEEeC------CCEECCCCEEcCC
Confidence 455666666666666654 3455555555555
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=103.27 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=18.3
Q ss_pred ecceEEecCC--HHHHHHHhhhccc
Q 009971 343 YDGYWEDIGT--IEAFYNANLGITK 365 (521)
Q Consensus 343 ~~g~w~dIgt--~edy~~An~~ll~ 365 (521)
...+|.+.+. |++|......+..
T Consensus 168 ~~~~Wt~~G~~~~~~f~~~~~~l~~ 192 (387)
T 2rij_A 168 SNVAWSDDKPIELEYLRANEMRLKM 192 (387)
T ss_dssp CCEEEETTEEECHHHHHHHHHHHHH
T ss_pred ceeeeccCcccCHHHHHHHHHHHHh
Confidence 3468999998 7888888887763
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=96.31 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=21.5
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||++++|. ++.|+.+++||++|+|.....+.++.+++++++|++|
T Consensus 149 ~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igag 195 (220)
T 4ea9_A 149 RLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAG 195 (220)
T ss_dssp EECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCC
Confidence 344444443 3444444444444444443333334455555555555
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=95.26 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=35.3
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEee---eEECCCCEECCCCEEcce
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~---s~ig~~~~Ig~~~~I~~s 434 (521)
+...+.+.+|..+.. -.++.||++++|+. |.|.+ ..||++|.||++|.|...
T Consensus 59 ig~~~~I~~~~~~~~--g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~ 114 (188)
T 3srt_A 59 VGKQINVEQNIRCDY--GYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTA 114 (188)
T ss_dssp CCSCEEECSCEEESS--STTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECE
T ss_pred cCCCCEEcCCEEEEe--CCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeC
Confidence 344455666665421 13677888888886 77763 489999999999988654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=92.52 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcceEE
Q 009971 384 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLL 436 (521)
Q Consensus 384 ~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~i 436 (521)
.+.+.||..+.- -.++.||++++|+. |.|. .+.||++|.|+++|.|.++..
T Consensus 64 ~~~I~~~~~~~~--g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~ 118 (190)
T 3hjj_A 64 KAQINPDFRCDY--GYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATH 118 (190)
T ss_dssp CCEECSSCEESS--STTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEEC
T ss_pred CcEECCCEEEEe--CCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCc
Confidence 455556555420 13567788888876 7665 568999999999999976543
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-08 Score=105.93 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=53.1
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee--------eE
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR--------AI 471 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~--------~i 471 (521)
++|+++|.|++ +.+.+|+||+++.|++.+.|++++|..+ +.||+++.+.| ++
T Consensus 353 ~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~-------------------v~IG~g~i~~n~dg~~~~~t~ 413 (501)
T 3st8_A 353 TALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEY-------------------SNIGASSVFVNYDGTSKRRTT 413 (501)
T ss_dssp CEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSS-------------------CEECTTCEEECBCSSSBCCEE
T ss_pred cEEccccccCCeEEEccceecCCcEEeccceecCceEcCC-------------------CEECCCEEEEcccCCcccCCE
Confidence 44555555554 5555555555555555555555554443 37888887743 77
Q ss_pred ECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 472 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 472 i~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
||++|.||.++.|.. ..+||++++|++| .+|-+
T Consensus 414 IGd~~~iG~~~~l~~------~v~Ig~~~~i~ag-s~v~~ 446 (501)
T 3st8_A 414 VGSHVRTGSDTMFVA------PVTIGDGAYTGAG-TVVRE 446 (501)
T ss_dssp ECTTCEECTTCEEES------SEEECTTCEECTT-CEECS
T ss_pred ECCCcEECCCCEEcC------CcEECCCCEECCC-CEECc
Confidence 888888888877775 4677777888777 44433
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=92.25 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=21.1
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.|++++.|. +++|+++|.||.++++.....+++.+.++.+++|..+
T Consensus 133 ~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~ 179 (194)
T 3bfp_A 133 HVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN 179 (194)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred EECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence 344444444 2444444444444444444444444444444444433
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=92.87 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=37.4
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEee---eEECCCCEECCCCEEcce
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~---s~ig~~~~Ig~~~~I~~s 434 (521)
+...+.+.||..+.. ..++.||++|+|+. |.|.+ +.||++|.||++|.|...
T Consensus 58 ig~~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 113 (203)
T 1krr_A 58 VGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT 113 (203)
T ss_dssp CCSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESE
T ss_pred cCCCcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecC
Confidence 344556666654321 24678999999987 77764 799999999999988754
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-08 Score=99.20 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=28.1
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-----eeEECCCCEECCCcEEeC
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~ 486 (521)
+++||++|.||++|.|...+.+++. +.|++++.+. +++||++|.||.+++|.+
T Consensus 183 gvvIG~~~~IG~~v~I~~~vtIG~~------------------~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg 240 (313)
T 3q1x_A 183 GVVIGETAIIGEWCRIYQSVTLGAM------------------HFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG 240 (313)
T ss_dssp TCEECTTCEECSSCEECTTCEEECC------------------CCCCTTCCCCCCSSCSCEECSSCEECTTCEEES
T ss_pred ceEECCCcEECCCCEECCCcEEeCC------------------cEECCCceEcCCCccCCEECCCCEECCCCEECC
Confidence 3566666666666666554443321 1233333332 346666777777666654
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-08 Score=100.22 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=50.1
Q ss_pred eEECCCcEEc--e-eEEe-eeEECCCCEECCCCEEcceEEEC-CccccccccccccccCCCcceeeCCCCEEe-eeEECC
Q 009971 401 SVIGEGCVIK--N-CKIH-HSVVGLRSCISEGAIIEDTLLMG-ADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 474 (521)
Q Consensus 401 ~~Ig~~~~I~--~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~-~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 474 (521)
+.||++++|+ . +.|+ +++||++|.|+++++|++....+ +........+...||+++ .||.+++|. ++.||+
T Consensus 170 a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v---~IGaga~Ilggv~IG~ 246 (313)
T 3q1x_A 170 ASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYV---TIGTGAKVLGNIIVGS 246 (313)
T ss_dssp CEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSC---EECTTCEEESSCEECS
T ss_pred CEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCC---EECCCCEECCCcEECC
Confidence 4456666663 2 5666 68999999999999987644433 222222223444565555 566666654 566666
Q ss_pred CCEECCCcEEeC
Q 009971 475 NARIGDNVKIVN 486 (521)
Q Consensus 475 ~~~Ig~~~~i~~ 486 (521)
+|.||+++++..
T Consensus 247 ~a~IGagsvV~~ 258 (313)
T 3q1x_A 247 HVRIGANCWIDR 258 (313)
T ss_dssp SEEECTTCEECS
T ss_pred CCEECCCCEECC
Confidence 666666666643
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=88.09 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=16.6
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+.+++||++|+|.....+.++++||++++|++|
T Consensus 129 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgag 161 (203)
T 1krr_A 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAG 161 (203)
T ss_dssp ECCEEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCCcEECCCeEECCCCEEeCCeEECCCCEECCC
Confidence 344455555555443333344555555666655
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-08 Score=101.68 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=53.3
Q ss_pred eEECCCcEEce------eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 401 SVIGEGCVIKN------CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 401 ~~Ig~~~~I~~------~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
+.|.+++.|+. +.+.++.||++|.| +++.|.+++|..+ +.||+++.|.+|+|++
T Consensus 303 ~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~i~~ 362 (420)
T 3brk_X 303 AEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTG-------------------VRANSYSRLENAVVLP 362 (420)
T ss_dssp CCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTT-------------------CEECTTCEEEEEEECT
T ss_pred cccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCC-------------------CEECCCCEEcceEEcC
Confidence 44555666652 56668888888888 8888887777665 5899999999999999
Q ss_pred CCEECCCcEEeC
Q 009971 475 NARIGDNVKIVN 486 (521)
Q Consensus 475 ~~~Ig~~~~i~~ 486 (521)
+|.||+++.|.+
T Consensus 363 ~~~i~~~~~i~~ 374 (420)
T 3brk_X 363 SVKIGRHAQLSN 374 (420)
T ss_dssp TCEECTTCEEEE
T ss_pred CCEECCCCEEec
Confidence 999999999975
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-08 Score=95.70 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=19.0
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQ 491 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~ 491 (521)
+.||+++.|. +|+|..+++||++|+|.....+.
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~ 153 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 153 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence 4566666665 56666666666666665544333
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.7e-08 Score=90.42 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=28.6
Q ss_pred cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 399 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
.++.||++|+|+. |.|. ...||++|.|+++|.|...
T Consensus 71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 110 (182)
T 1ocx_A 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTA 110 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeC
Confidence 4577888888886 7774 5789999999999988754
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-08 Score=103.02 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=71.4
Q ss_pred cceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCC---
Q 009971 399 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN--- 475 (521)
Q Consensus 399 ~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~--- 475 (521)
.++.|+++++|.++.|.+++||++|.|+. |.|.+++|..+ +.||++++|.++++..+
T Consensus 313 ~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~~~~~~~ 372 (451)
T 1yp2_A 313 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDSLLMGADYY 372 (451)
T ss_dssp CCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT-------------------CEECTTCEEESCEECCCSSC
T ss_pred cCCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC-------------------CEECCCCEEcCceEECCCCc
Confidence 35667777777547777788888888875 77776666554 58999999987766666
Q ss_pred ----------------CEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCc
Q 009971 476 ----------------ARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 519 (521)
Q Consensus 476 ----------------~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gs 519 (521)
+.||+++.|.+ ..+++.+.||++++|..+. .+||+++.||+|+
T Consensus 373 ~~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~ 436 (451)
T 1yp2_A 373 ETDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 436 (451)
T ss_dssp CCHHHHHHHHTTTCCCSEECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE
T ss_pred ccccccccccccCceeEEECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE
Confidence 89999988864 5667777777777776541 2566666666665
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=87.77 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=36.4
Q ss_pred eeEECCCCEECCCCEEcce--EEECCccccccccccccccCCCcceeeCCCCEEee-------------eEECCCCEECC
Q 009971 416 HSVVGLRSCISEGAIIEDT--LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-------------AIIDKNARIGD 480 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s--~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-------------~ii~~~~~Ig~ 480 (521)
++.||++|.|+++|.|.+. +.+|++ +.||+++.|.. ..++..++||+
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~------------------v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~ 135 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDN------------------VFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGS 135 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSS------------------EEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred CcEECCCeEECCCeEEecCCEEEECCC------------------CEECCCCEEecCCCcCccccccccceecCCeEEcC
Confidence 5666666666666666433 333321 46677776632 12334444444
Q ss_pred CcEEeCCCccCCceeecCCeEEcCC
Q 009971 481 NVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 481 ~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+|+|.....+.++++||++++|++|
T Consensus 136 ~v~IG~~~~I~~gv~IG~~~vIgag 160 (199)
T 3ftt_A 136 NTWFGGHVAVLPGVTIGEGSVIGAG 160 (199)
T ss_dssp SEEECTTCEECTTCEECTTCEECTT
T ss_pred CcEEcCCCEECCCCEECCCCEECCC
Confidence 4444443333334455555555555
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=87.72 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=49.8
Q ss_pred ECC-CcEEce-eEE--e-eeEECCCCEECCCCEEcc--eEEECCccccccccccccccCCCcceeeCCCCEEee------
Q 009971 403 IGE-GCVIKN-CKI--H-HSVVGLRSCISEGAIIED--TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR------ 469 (521)
Q Consensus 403 Ig~-~~~I~~-~~I--~-~s~ig~~~~Ig~~~~I~~--s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~------ 469 (521)
+++ ++.|.. +.+ . ++.||+++.|+++|.|.+ .+.+|+ + +.||++++|..
T Consensus 60 ~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~~v~IG~---------------~---~~Ig~~~~I~~~~~~~~ 121 (190)
T 3hjj_A 60 SADGKAQINPDFRCDYGYNIHVGKSFFANFNCVILDVCEVRIGD---------------H---CMFAPGVHIYTATHPLH 121 (190)
T ss_dssp ESSSCCEECSSCEESSSTTEEECTTCEECTTCEEECSSCEEECT---------------T---CEECTTCEEECEECCSS
T ss_pred cCCCCcEECCCEEEEeCCceEECCceeeCCCeEEEeCCCeEECC---------------c---eEEcCCcEEecCCccCc
Confidence 455 555554 322 3 688888888888888874 333333 2 37777777732
Q ss_pred -------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 470 -------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 470 -------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+.++.+++||++|+|.....+.++++||++++|++|
T Consensus 122 ~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgag 164 (190)
T 3hjj_A 122 PVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASG 164 (190)
T ss_dssp HHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred hhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 233455556666555554444445555666666666
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=84.93 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=43.0
Q ss_pred ECCCcEEce-eEE---eeeEECCCCEECCCCEEcce--EEECCccccccccccccccCCCcceeeCCCCEEe--------
Q 009971 403 IGEGCVIKN-CKI---HHSVVGLRSCISEGAIIEDT--LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-------- 468 (521)
Q Consensus 403 Ig~~~~I~~-~~I---~~s~ig~~~~Ig~~~~I~~s--~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 468 (521)
+++++.|.. ..+ .++.||+++.|+.+|.|.+. +.+|+ + +.||++++|.
T Consensus 59 ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~IG~---------------~---~~Ig~~v~I~~~~h~~~~ 120 (188)
T 3srt_A 59 VGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIEIGD---------------N---VMLAPNVQIYTAYHPIDA 120 (188)
T ss_dssp CCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEEECS---------------S---CEECTTCEEECEECCSSH
T ss_pred cCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceEECC---------------e---eEECCCcEEeeCCccCch
Confidence 344444443 222 25677777777777776542 23332 2 3677777762
Q ss_pred -----eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 -----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 -----~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++.++..++||++|+|.....+.++.+||++++|++|
T Consensus 121 ~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgag 162 (188)
T 3srt_A 121 QLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAG 162 (188)
T ss_dssp HHHHTTEEEECCEEECSSCEECTTCEECTTCEECSSEEECTT
T ss_pred hhccccceECCCcEECCCcEEcCCCEECCCcEECCCCEECCC
Confidence 1222344444444444443333334555556666665
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=85.14 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.1
Q ss_pred cceEECCCcEEce-eEE---eeeEECCCCEECCCCEEcce
Q 009971 399 TDSVIGEGCVIKN-CKI---HHSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I---~~s~ig~~~~Ig~~~~I~~s 434 (521)
.++.||++++|+. |.| .+..||++|.|+++|.|.+.
T Consensus 73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 112 (185)
T 2p2o_A 73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTA 112 (185)
T ss_dssp TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcC
Confidence 4677888888886 777 36799999999999999754
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.3e-08 Score=89.38 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=6.5
Q ss_pred ceeecCCeEEcCC
Q 009971 493 AARETDGYFIKSG 505 (521)
Q Consensus 493 ~~~~~~~~~I~~g 505 (521)
+++||++++|++|
T Consensus 148 gv~IG~~~vIgag 160 (185)
T 2p2o_A 148 GVTIGDNAVIASG 160 (185)
T ss_dssp TCEECTTCEECTT
T ss_pred CCEECCCCEECCC
Confidence 3444555555555
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.4e-08 Score=94.14 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=41.3
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||++|+|+.. .+++||++|.||++|.|...+.+++...+. ..+.+.||+++ .||.+++|. ++.||++|.||+
T Consensus 172 ~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~-~~r~~~IGd~v---~IGaga~Il~gv~IG~~a~IGa 245 (287)
T 3mc4_A 172 RLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTGKSS-GDRHPKIRQGV---LIGAGAKILGNIQVGQCSKIAA 245 (287)
T ss_dssp EECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC------CCCSCEECTTC---EECTTCEEESSCEECTTCEECT
T ss_pred EECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCcccC-CCcCCEECCCC---EECCCCEECCCcEECCCCEECC
Confidence 44555555420 145666666666666666554444321111 12345555555 566666665 566666666666
Q ss_pred CcEEeC
Q 009971 481 NVKIVN 486 (521)
Q Consensus 481 ~~~i~~ 486 (521)
++++..
T Consensus 246 gsvV~k 251 (287)
T 3mc4_A 246 GSVVLK 251 (287)
T ss_dssp TCEECS
T ss_pred CCEEcc
Confidence 666653
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=91.26 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=42.0
Q ss_pred ceEECCCcEEceeEEeeeEEC--CCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEE---eeeEECC
Q 009971 400 DSVIGEGCVIKNCKIHHSVVG--LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI---KRAIIDK 474 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I~~s~ig--~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i---~~~ii~~ 474 (521)
++.|++++.|++ ++.|+ .++.||++|+|++.+.++.. +.||.+... ++++||+
T Consensus 164 gi~I~p~a~IG~----~v~I~hg~gvvIG~~~~IGd~v~I~~g------------------vtIg~~~~~~~~r~~~IGd 221 (287)
T 3mc4_A 164 QTDIHPAARLGS----GLFLDHATGLVVGETAVVEDNVSILHG------------------VTLGGTGKSSGDRHPKIRQ 221 (287)
T ss_dssp CCEECTTCEECS----SCEEESCTTCEECTTCEECSSCEEETT------------------CEEEC-----CCCSCEECT
T ss_pred CeEECCCCEECC----CeEEccCCCeEECCCeEECCCCEEcCC------------------CEEcCCcccCCCcCCEECC
Confidence 456777777774 44444 67777777777655443321 233322111 1256677
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
||.||.+++|... ++||++++|++|
T Consensus 222 ~v~IGaga~Il~g------v~IG~~a~IGag 246 (287)
T 3mc4_A 222 GVLIGAGAKILGN------IQVGQCSKIAAG 246 (287)
T ss_dssp TCEECTTCEEESS------CEECTTCEECTT
T ss_pred CCEECCCCEECCC------cEECCCCEECCC
Confidence 7777777666653 444444555544
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=92.78 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=24.4
Q ss_pred cceEE--EEeCCeeccccHHHHHHHHHhcC
Q 009971 205 VLEFL--VLAGDHLYRMDYERFIQAHRETD 232 (521)
Q Consensus 205 ~~~~L--vl~gD~l~~~dl~~ll~~h~~~~ 232 (521)
.|++| ++++|+|...++.+.+.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 47899 99999999999999999997654
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.8e-06 Score=87.80 Aligned_cols=346 Identities=14% Similarity=0.116 Sum_probs=181.7
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC----CC-ceEEEEecC-ChHHHHHHHHHhhh
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NI-SKIYVLTQF-NSASLNRHLSRAYA 159 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~----gi-~~I~Iv~~~-~~~~i~~~l~~~~~ 159 (521)
.-.++.+|+||||.||||+ ...||.++|+...+++++..++.+... |. -..+|.+.+ ..+...++|++...
T Consensus 124 ~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~ 200 (528)
T 3r3i_A 124 VLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH 200 (528)
T ss_dssp TCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred hcCceEEEEeCCCCccccC---CCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence 4568999999999999997 578999999973359999999998763 42 245566654 45788888887432
Q ss_pred ccCCC-CcCCCcEEEeecc-cC----------CCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCee-cccc
Q 009971 160 SNMGG-YKNEGFVEVLAAQ-QS----------PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHL-YRMD 220 (521)
Q Consensus 160 ~~~~~-~~~~~~v~vl~~~-q~----------~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l-~~~d 220 (521)
++... .|.+..+..+... .. +....| +.|.++-.... ++.+.....+++.+.+.|.+ ...|
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vD 280 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccC
Confidence 22100 1111111111100 00 011123 45665433322 23333346789999999994 4455
Q ss_pred HHHHHHHHHhc----CCcEEEEEEecCcccCcceeEEEe-CCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCc
Q 009971 221 YERFIQAHRET----DADITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295 (521)
Q Consensus 221 l~~ll~~h~~~----~aditi~~~~~~~~~~~~~g~v~~-d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (521)
.. ++..+.++ ++++.+-+.+.... ...-|.+.. |..-+++++.+-|+..... . + ....-.
T Consensus 281 p~-~Lg~~~~~~~~~~~d~~~kVv~Kt~~-dek~Gvl~~~dGk~~vvEyseip~e~~~~-~---~---------g~~~f~ 345 (528)
T 3r3i_A 281 LY-ILNHLMNPPNGKRCEFVMEVTNKTRA-DVKGGTLTQYEGKLRLVEIAQVPKAHVDE-F---K---------SVSKFK 345 (528)
T ss_dssp HH-HHHHHSSCSSSCCCSEEEEECCCCTT-CCSSCEEECSSSSCEEECTTSSCGGGTTT-S---S---------CSSSCC
T ss_pred HH-HHHHHHhcccccCCcEEEEEeEcccc-CCcccEEEEECCeEEEEEecCCChhHhhc-c---C---------CcccCC
Confidence 33 56666666 78876655543221 123455543 2223577777766543211 0 0 011234
Q ss_pred eeeEEEEEEeHHHHHHHHhhhCCCCC------------------ChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHH
Q 009971 296 IASMGIYVISKDVMLNLLRDKFPGAN------------------DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAF 356 (521)
Q Consensus 296 l~~~GIyifs~~vl~~ll~~~~~~~~------------------d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy 356 (521)
+.++...+|+-+.++++++....... .+..++++.. .+..++.++ ..|.-+.+..|+
T Consensus 346 ~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f----~~~~~i~VpR~rF~PvKn~sdL 421 (528)
T 3r3i_A 346 IFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF----ENSLGINVPRSRFLPVKTTSDL 421 (528)
T ss_dssp CCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS----SSCCCEECCGGGCCBCCSHHHH
T ss_pred eEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc----cCcEEEEEehHHcccccchHHH
Confidence 68999999999999888875311110 1112222222 123344443 348889999998
Q ss_pred HHHhhhcc--cCCCCCccccccCCCcccCCCCcCCCce-ee--cccccc--eEECCCcEEceeEEeeeEECCCCEECCCC
Q 009971 357 YNANLGIT--KKPIPDFRYFYDRSAPIYTQPRYLPPSK-ML--DADVTD--SVIGEGCVIKNCKIHHSVVGLRSCISEGA 429 (521)
Q Consensus 357 ~~An~~ll--~~~~~~~~~~~~~~~~i~~~~~~~~~~~-i~--~~~i~~--~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~ 429 (521)
+.....+- .... + ...+...... +|.+ ++ ..+|.+ ..+..--.|-+ ..+-.|--+++.|.++
T Consensus 422 ll~~Sdly~l~~g~--l--~~~~~r~~~~-----~P~v~L~~~~~~v~~f~~rf~~iP~l~~--~~~LtV~Gdv~fg~~v 490 (528)
T 3r3i_A 422 LLVMSNLYSLNAGS--L--TMSEKREFPT-----VPLVKLGSSFTKVQDYLRRFESIPDMLE--LDHLTVSGDVTFGKNV 490 (528)
T ss_dssp HHHHSTTSEEETTE--E--ECCSSCSSCC-----CCEEEECTTSCSHHHHHHHCSSCCEEEE--EEEEEEESEEECCTTC
T ss_pred HHHhcceeEeeCCe--E--EecccccCCC-----CCEEEeCcccCcHHHHHHhCCCCCCccc--CCEEEEecceEECCCc
Confidence 76654432 2110 0 0111110000 1111 11 112211 11222122221 2344566667778888
Q ss_pred EEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 430 IIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 430 ~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
++.+.+++-++ ...++.|.++++++|.+|..|.+|
T Consensus 491 ~l~G~v~i~~~--------------~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 491 SLKGTVIIIAN--------------HGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEEEEEEEECC--------------TTCEEECCTTCEEEEEEEC-----
T ss_pred EEEEEEEEEcC--------------CCCceecCCCCEEeccEEeccccc
Confidence 88888776431 223478999999999988877666
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=93.50 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=11.2
Q ss_pred eeEECCCCEECCCCEEcceEE
Q 009971 416 HSVVGLRSCISEGAIIEDTLL 436 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i 436 (521)
+++||++|.||++|.|...+.
T Consensus 210 gvvIG~~~~IG~~v~I~~gvt 230 (310)
T 3f1x_A 210 GVVIGATSIIGNNVKLYQGVT 230 (310)
T ss_dssp TCEECTTCEECSSCEEETTCE
T ss_pred CeEECCceEEcCCCEECCCCE
Confidence 455555555555555544433
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-07 Score=82.39 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=6.7
Q ss_pred ceeecCCeEEcCC
Q 009971 493 AARETDGYFIKSG 505 (521)
Q Consensus 493 ~~~~~~~~~I~~g 505 (521)
+++||++++|++|
T Consensus 146 gv~IG~~~vIgag 158 (182)
T 1ocx_A 146 GVTIGDNVVVASG 158 (182)
T ss_dssp TCEECTTCEECTT
T ss_pred CcEECCCCEECCC
Confidence 3445555555555
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-07 Score=96.29 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=18.8
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
++||++|.||.+++ .+.+||++|+|++| ++|.+++.+
T Consensus 291 VvIGdnv~IGagAv--------~GV~IGdgavIGAG-sVVt~dv~i 327 (387)
T 2rij_A 291 ISVGKACLLGANSV--------TGIPLGDNCIVDAG-IAVLEGTKF 327 (387)
T ss_dssp CEECTTCEECTTCE--------ECSCBCTTCEECTT-CEECTTCEE
T ss_pred eEEeCCCEECCCCc--------CCcEECCCCEECCC-CEECCCcee
Confidence 45555555555554 23445555555555 455554444
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=88.62 Aligned_cols=79 Identities=28% Similarity=0.375 Sum_probs=38.2
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEEC
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 479 (521)
+.||++++|++. .+++||++|.||++|.|...+.+++...+. ..+.+.||+++ .||.+++|. ++.||++|+||
T Consensus 144 a~IG~g~~I~~~--~~vvIG~~~~IG~~v~I~~gvtig~~~~~~-~~~~~~IGd~v---~IGaga~Il~gv~IG~~a~IG 217 (267)
T 1ssq_A 144 AKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKES-GDRHPKVREGV---MIGAGAKILGNIEVGKYAKIG 217 (267)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSSC-SSCSCEECTTC---EECTTCEEESSCEECTTCEEC
T ss_pred CEECCCEEECCC--CceEECCeeEECCCCEEcCCcEECCCcccC-CCCCeEECCCe---EEcCCCEEeCCcEECCCCEEC
Confidence 345666666530 034555555555555555444444321110 11234444444 555555554 45555555555
Q ss_pred CCcEEe
Q 009971 480 DNVKIV 485 (521)
Q Consensus 480 ~~~~i~ 485 (521)
+++++.
T Consensus 218 agsvV~ 223 (267)
T 1ssq_A 218 ANSVVL 223 (267)
T ss_dssp TTCEEC
T ss_pred CCCEEc
Confidence 555554
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=86.36 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=24.6
Q ss_pred cceEE--EEeCCeeccccHHHHHHHHHhcC
Q 009971 205 VLEFL--VLAGDHLYRMDYERFIQAHRETD 232 (521)
Q Consensus 205 ~~~~L--vl~gD~l~~~dl~~ll~~h~~~~ 232 (521)
.|++| ++++|+|...+|.+.+.+|.+.+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 47999 99999999999999999997654
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=87.25 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=20.0
Q ss_pred EECCCcEE--ce-eEEe-eeEECCCCEECCCCEEcceE
Q 009971 402 VIGEGCVI--KN-CKIH-HSVVGLRSCISEGAIIEDTL 435 (521)
Q Consensus 402 ~Ig~~~~I--~~-~~I~-~s~ig~~~~Ig~~~~I~~s~ 435 (521)
.||++++| +. ++|+ +++||++|.|+++|+|++..
T Consensus 198 ~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~ 235 (310)
T 3f1x_A 198 QIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKS 235 (310)
T ss_dssp EECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC-
T ss_pred EECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCc
Confidence 34555555 22 4444 56777777777777777654
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00038 Score=72.87 Aligned_cols=346 Identities=13% Similarity=0.121 Sum_probs=186.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCC-ceEEEEecCC-hHHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFN-SASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi-~~I~Iv~~~~-~~~i~~~l~~~~~~ 160 (521)
-.++.+|+||||.||||+ ...||.++|+...+++++..++.+.. .+. -..+|-+.++ .+...++|++...+
T Consensus 74 L~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 74 LRQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp HTTEEEEEEECCCCGGGT---CSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred HhhcEEEEEcCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 347999999999999997 57899999995445999999988864 232 2556777655 57889999874433
Q ss_pred cCC----CCcCCCcEEEeecccC-C----C--CCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCeeccccHHH
Q 009971 161 NMG----GYKNEGFVEVLAAQQS-P----E--NPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYER 223 (521)
Q Consensus 161 ~~~----~~~~~~~v~vl~~~q~-~----~--~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~ 223 (521)
++. ..|.+..+..+..... + . ...| +.|.++-.... ++.+.....+++.+.+.|.+...-=..
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 321 1223332332222111 0 0 1113 45776533322 223333467899999999966532245
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEEeC---------CCC--CeEEeeeCCChhhhhhcccccccccCCchhhcc
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMKID---------EEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d---------~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (521)
++..+.++++++.+-+.+....+ ..-|.+... .+| +++++.+-|+..... .+ + ..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~-f~--------~----~~ 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDS-FQ--------N----IA 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHH-HT--------C----TT
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhh-hc--------C----CC
Confidence 77888889999887776644322 234543331 234 577777766543211 00 0 01
Q ss_pred CCceeeEEEEEEeHHHHHHHHhhh--CCCCC-------------Ch-----hhcchHhhhhCCceEEEEEec-ceEEecC
Q 009971 293 MPYIASMGIYVISKDVMLNLLRDK--FPGAN-------------DF-----GSEVIPGATSIGMRVQAYLYD-GYWEDIG 351 (521)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~~--~~~~~-------------d~-----~~dil~~li~~~~~I~~~~~~-g~w~dIg 351 (521)
..-+.+++-.+++-..++++++.. ..... +. .+-.+..+.+.-.+..++.++ ..|.-+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvK 376 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVK 376 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCS
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccc
Confidence 123558888999988887777653 10000 00 011122222212245566654 4688889
Q ss_pred CHHHHHHHhhhcccCCCCCccccc-cCCCcccCCCCcCCCc-eeec---ccccc--eEECCCc-EEceeEEeeeEECCCC
Q 009971 352 TIEAFYNANLGITKKPIPDFRYFY-DRSAPIYTQPRYLPPS-KMLD---ADVTD--SVIGEGC-VIKNCKIHHSVVGLRS 423 (521)
Q Consensus 352 t~edy~~An~~ll~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~i~~---~~i~~--~~Ig~~~-~I~~~~I~~s~ig~~~ 423 (521)
+..|++.....+-.-. .+.. .. .+.. . ...|. .++. .+|.+ ..+..|. .|-++ .+-+|--++
T Consensus 377 n~sdLl~~~Sdly~l~-~~~~-l~~~~~~-~-----~~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~--~~L~V~Gdv 446 (484)
T 3gue_A 377 TCSDLLALRSDAYQVT-EDQR-LVLCEER-N-----GKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQC--TSLTVRGLV 446 (484)
T ss_dssp SHHHHHHHHSTTEEEC-TTSC-EEECGGG-T-----TCCCEEEECTTTSSSHHHHHHHHTTCCCBCTTE--EEEEEESSE
T ss_pred cchHHHHHhhhceecc-CCce-EEecccc-C-----CCCCeEEECchhcCcHHHHHHhcCCCCCChhhC--CEEEEecce
Confidence 9999887765543211 0000 10 1110 0 01122 1211 11211 1122211 12211 244555557
Q ss_pred EECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 424 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 424 ~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
+.|.++++.+.+++.++ ...++.|.++++++|.+|.
T Consensus 447 ~fg~~v~l~G~v~i~~~--------------~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 447 EFGADVSVRGNVVIKNL--------------KEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp EECTTCEEEEEEEEEEC--------------SSSCEEECTTCEEESCEEE
T ss_pred EECCCcEEEEEEEEEcC--------------CCCeeecCCCCEecceecC
Confidence 77777778777766431 1224788888888887763
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-07 Score=85.32 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=16.2
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+++||++|.||.+++|.. +++||++++|++|
T Consensus 111 ~v~IG~~v~IG~~a~I~~------gv~IG~~~iIgag 141 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMP------GVKIGHGAIIASR 141 (212)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CeEECCCCEECCCCEEcC------CCEECCCCEECCC
Confidence 455555555555555543 3445555555555
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=86.89 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=34.8
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEEC
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 479 (521)
+.||++++|+.. .+++||++|.||++|.|...+.+++...+.. .+.+.||+++ .||.++.|. ++.||++|+||
T Consensus 164 a~IG~gv~I~~g--~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~-~~~~~IGd~v---~IGaga~Ilggv~IG~~a~IG 237 (289)
T 1t3d_A 164 AKIGRGIMLDHA--TGIVVGETAVIENDVSILQSVTLGGTGKSGG-DRHPKIREGV---MIGAGAKILGNIEVGRGAKIG 237 (289)
T ss_dssp CEECSSCEECSC--TTCEECTTCEECSSCEECTTCEEECCSSSCS-SCSCEECTTC---EECTTCEEESSCEECTTCEEC
T ss_pred CEEcCCEEECCC--CceEECCCcEECCCCEEcCCcEECCCccccC-CCCeEECCCe---EECCCCEEecCcEECCCCEEC
Confidence 345566666520 1345555555555555554443332111100 1233344443 444444443 44455555555
Q ss_pred CCcEEe
Q 009971 480 DNVKIV 485 (521)
Q Consensus 480 ~~~~i~ 485 (521)
+++++.
T Consensus 238 agsvV~ 243 (289)
T 1t3d_A 238 AGSVVL 243 (289)
T ss_dssp TTCEEC
T ss_pred CCCEEc
Confidence 554443
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=80.48 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=20.0
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQ 491 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~ 491 (521)
+.||++|.|. +|+|.++++||++|+|.....+.
T Consensus 112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~ 145 (212)
T 3eev_A 112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT 145 (212)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 5666666665 66666666666666666544444
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=83.51 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=19.4
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
+++||++|.||.+++|.. +.++|++++|++|
T Consensus 118 ~v~Igd~v~IG~~a~I~~------gv~IG~~~~Igag 148 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMP------GVKIGDGAIIAAE 148 (219)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CcEECCCeEECCCCEEcC------CCEECCCCEECCC
Confidence 566777777777766654 3455556666655
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-06 Score=83.14 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.5
Q ss_pred eeeEECCCCEECCCCEE
Q 009971 415 HHSVVGLRSCISEGAII 431 (521)
Q Consensus 415 ~~s~ig~~~~Ig~~~~I 431 (521)
....||++|.|+++|+|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 46788888888888876
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=81.37 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=11.2
Q ss_pred eeEECCCCEECCCCEE
Q 009971 416 HSVVGLRSCISEGAII 431 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I 431 (521)
.++||++|.|+++++|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 3677777777777766
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=75.96 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=24.2
Q ss_pred cceEECCCcEEce----eEEeeeEE--------CCCCEECCCCEEcceEE
Q 009971 399 TDSVIGEGCVIKN----CKIHHSVV--------GLRSCISEGAIIEDTLL 436 (521)
Q Consensus 399 ~~~~Ig~~~~I~~----~~I~~s~i--------g~~~~Ig~~~~I~~s~i 436 (521)
.+..||++++|.. |.+.++++ ...+.||++|.|...+.
T Consensus 21 ~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~ 70 (212)
T 1xat_A 21 PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAA 70 (212)
T ss_dssp TTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCE
T ss_pred CCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCE
Confidence 3556777777763 33334444 46788888888886654
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.4e-06 Score=80.12 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=19.4
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQ 491 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~ 491 (521)
+.||+++.|. +++|..+++||++++|.....+.
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~ 152 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 152 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 4566666665 56666666666666665544443
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-06 Score=78.08 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=24.8
Q ss_pred cceEECCCcEEce--------eEEe-eeEECCCCEECCCCEEcceE
Q 009971 399 TDSVIGEGCVIKN--------CKIH-HSVVGLRSCISEGAIIEDTL 435 (521)
Q Consensus 399 ~~~~Ig~~~~I~~--------~~I~-~s~ig~~~~Ig~~~~I~~s~ 435 (521)
.++.||++++|++ +.+. .+.++.++.||++|.|+..+
T Consensus 28 ~~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv 73 (209)
T 1mr7_A 28 ENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGV 73 (209)
T ss_dssp TTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTC
T ss_pred CCeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCC
Confidence 3566777777764 2333 24457778999999998665
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0072 Score=64.94 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHh-CCC-ceEEEEecCC-hHHHHHHHHHhhhcc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN-SNI-SKIYVLTQFN-SASLNRHLSRAYASN 161 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~-~gi-~~I~Iv~~~~-~~~i~~~l~~~~~~~ 161 (521)
.++..|+||||.||||+ ...||.++|++ |+ +++++.++++.+ .|. -..+|.+.++ .+...++|.+ |...
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 58999999999999998 57899999995 65 999999999975 343 2456666644 5889999988 4332
Q ss_pred CC--CCcCCCcEEEeeccc------CCCCCCC-CCChHHHHHH-----------------------HHHHhhhcCcceEE
Q 009971 162 MG--GYKNEGFVEVLAAQQ------SPENPNW-FQGTADAVRQ-----------------------YLWLFEEHNVLEFL 209 (521)
Q Consensus 162 ~~--~~~~~~~v~vl~~~q------~~~~~~~-~~Gt~~al~~-----------------------~~~~l~~~~~~~~L 209 (521)
.. ..|.++.+..+.... .+....| +.|.++-... .++.+.....+++.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 10 012222222221100 0001112 4566653332 22333334578999
Q ss_pred EEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe--CCCCCe-----EEeeeCCChhhhhhcccccc
Q 009971 210 VLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGRI-----IEFSEKPKGEQLKAMKVDTT 281 (521)
Q Consensus 210 vl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~--d~~grV-----~~i~ekp~~~~~~~~~~~~~ 281 (521)
+.+.|. |...---.++-.+.++++++.+-+.+... ...-|.+.. ..+|+. ++|.|-+..... .. +..
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~--~~-~~~ 342 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRA--LN-KDG 342 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHH--C-----
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhh--cc-CCC
Confidence 999999 54433334778888889998777665322 233454443 235555 454443221110 00 000
Q ss_pred cccC-CchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 282 ILGL-DDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 282 ~~~~-~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+. .......+.+..++..++|+-+.+.+.+.
T Consensus 343 --g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~ 374 (630)
T 3ogz_A 343 --GDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLR 374 (630)
T ss_dssp ----------CCCSSCEEEEEEEEEHHHHHHHHH
T ss_pred --ccccccccccccccccceeeeEEHHHHHHHHH
Confidence 00 00011123345689999999875555554
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0052 Score=57.39 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=69.9
Q ss_pred ccEEEEEEe--CCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceE-EEEecCChHHHHHHHHHhhhccCCC
Q 009971 88 RSVLGIILG--GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGG 164 (521)
Q Consensus 88 ~~~~aVILA--aG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (521)
+.|.+||++ +...|||.|.- -|.....+ |+ |||+|+++.+..++++++ ++++++... .+ + +
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~l--~~~~~~~l-~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~--~~-----~-~---- 65 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPVL--SLQEREEF-VE-LMLNQVISSLKGAGIEQVDILSPSVYGL--EE-----M-T---- 65 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTTS--CHHHHHHH-HH-HHHHHHHHHHHHTTCSEEEEEESSCTTC--SS-----C-C----
T ss_pred CceEEEEEeCCCCCccccCccC--CHHHHHHH-HH-HHHHHHHHHHHHcCCceEEEEEcCcHHH--Hh-----h-c----
Confidence 358899999 66778887410 11122234 55 999999999999999999 888875431 11 0 1
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHH
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQ 226 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~ 226 (521)
+ ++++. + + .|.++++..+...+ .+.++++.||+ +.+ ..+..+++
T Consensus 66 ----~-~~~v~--~----~---~gl~~sl~~a~~~~----~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 66 ----E-ARVLL--D----E---KDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp ----S-SEEEE--C----C---SCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred ----C-CEEEE--C----C---CCHHHHHHHHHHhc----CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 1 23332 1 1 57888998887654 26899999999 555 44777765
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=87.86 E-value=2.2 Score=40.38 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=70.6
Q ss_pred cEEEEEEeC----C-CCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHH---HHHHHHhhhc
Q 009971 89 SVLGIILGG----G-AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL---NRHLSRAYAS 160 (521)
Q Consensus 89 ~~~aVILAa----G-~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i---~~~l~~~~~~ 160 (521)
+...||++= | .-|||.|. --+..-..+. .+|+.++++.+...+...++++++.....+ ...+..
T Consensus 4 ~~~liv~~K~P~~g~~KTRL~~~--l~~~~aa~l~--~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~~---- 75 (242)
T 3cgx_A 4 ESCILFFVKYPEPGKVKTRLGEV--VGNDKAAMLY--RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGP---- 75 (242)
T ss_dssp SEEEEEEECCCCTTTSCHHHHHH--HCHHHHHHHH--HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHCT----
T ss_pred CCEEEEEeCCCCCCCcccccCcc--CCHHHHHHHH--HHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhccC----
Confidence 334555553 2 33676642 0122233343 489999999999998888877777655443 222211
Q ss_pred cCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHH
Q 009971 161 NMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHR 229 (521)
Q Consensus 161 ~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~ 229 (521)
. +.+.. | |..|.+.++..++..+-....+.++++.+|+ |...++.++++.+.
T Consensus 76 --------~-~~~~~--q------~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 76 --------Q-HMFAA--Q------QGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp --------T-SEEEE--C------CSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred --------C-cEEec--C------CCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 1 11221 2 1267889999988654222346899999999 55567888887654
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=84.71 E-value=8.1 Score=35.27 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=60.1
Q ss_pred chhHHHHHHhHhCCCc--eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~ 199 (521)
..|...|+.+.+.... +|+||-+...+...+.+.+-.. ....+.++.. .+ .|.+.+...++..
T Consensus 18 ~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~-------~~~~i~~i~~----~n----~G~~~a~N~g~~~ 82 (240)
T 3bcv_A 18 KYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA-------QYPNIKVIHK----KN----AGLGMACNSGLDV 82 (240)
T ss_dssp TTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH-------HCSSEEEEEC----CC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh-------hCCCEEEEEC----CC----CChHHHHHHHHHH
Confidence 5677888888765432 5666644222222222222100 0112555532 12 7888888888766
Q ss_pred hhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
.+ .+.++++..|.+...+ +..+++...+.+.++.+.
T Consensus 83 a~---g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 83 AT---GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp CC---SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred cC---CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 54 4789999999987766 888888887767775443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 521 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 1e-94 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 6e-35 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 1e-30 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-26 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 3e-25 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 2e-19 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-17 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 1e-11 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 4e-09 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 8e-09 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 2e-06 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 0.004 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 288 bits (737), Expect = 1e-94
Identities = 293/308 (95%), Positives = 305/308 (99%), Gaps = 1/308 (0%)
Query: 79 QTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK 138
QTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK
Sbjct: 1 QTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK 60
Query: 139 IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198
IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTADAVRQYLW
Sbjct: 61 IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLW 120
Query: 199 LFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 258
LFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAFGLMKIDEE
Sbjct: 121 LFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 180
Query: 259 GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP 318
GRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASMGIYVISKDVMLNLLRDKFP
Sbjct: 181 GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP 240
Query: 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRS 378
GANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDF FYDRS
Sbjct: 241 GANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRS 299
Query: 379 APIYTQPR 386
APIYTQPR
Sbjct: 300 APIYTQPR 307
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 125 bits (315), Expect = 6e-35
Identities = 126/135 (93%), Positives = 131/135 (97%)
Query: 387 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 446
YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 447 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 506
DR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 507 VTIIKDALIPSGTII 521
VT+IKDALIPSG II
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 118 bits (298), Expect = 1e-30
Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRL+P T +K +P+ + +I P+S + + I +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVY-DKPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ L G + +++ A Q G A A LVL
Sbjct: 63 QQLL--------GDGSNWGLDLQYAVQ-----PSPDGLAQAFLIGESFIGNDL--SALVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ Y D+ + + + +V A + + +G+++ D+ G+ I EKP
Sbjct: 108 GDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEEKPL-- 163
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--NDFGSEVIP 329
+ A G+Y + V +++ RD P ++V
Sbjct: 164 -------------------EPKSNYAVTGLYFYDQQV-VDIARDLKPSPRGELEITDVNR 203
Query: 330 GATSIG-MRVQAYLYDGYWEDIGTIEAFYNAN 360
G + V+ W D GT ++ A
Sbjct: 204 AYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 106 bits (266), Expect = 2e-26
Identities = 58/272 (21%), Positives = 97/272 (35%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GI+L GG+GTRLYP+T+ +K +P+ + +I P+S + + I I +++ L
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIY-DKPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
R L +G G Q+ P G ADA + V LVL
Sbjct: 65 RDL-------LGDGSQFGVRFSYRVQEEPR------GIADAFIVGKDFIGDSKV--ALVL 109
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ Y + ++ + + + + FG+++ D EGR+I EKP
Sbjct: 110 GDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDP--RPFGVVEFDSEGRVISIEEKPS-- 165
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVI 328
+ G+Y V + + R P + S
Sbjct: 166 -------------------RPKSNYVVPGLYFYDNQV-VEIARRIEPSDRGELEITSVNE 205
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
+RV+ W D GT + A+
Sbjct: 206 EYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 3e-25
Identities = 57/272 (20%), Positives = 96/272 (35%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRL+P+T+ +K +P+ + +I P+S + + I +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIY-DKPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ L +G G A Q SP+ G A A LVL
Sbjct: 63 QRL-------LGDGSEFGIQLEYAEQPSPD------GLAQAFIIGETFLNGEPS--CLVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ + + ++ TV + + FG+++ D+ R I EKPK
Sbjct: 108 GDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPE--RFGVVEFDDNFRAISLEEKPK-- 163
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN--DFGSEVIP 329
+ A G+Y V + + P + +
Sbjct: 164 -------------------QPKSNWAVTGLYFYDSKV-VEYAKQVKPSERGELEITSINQ 203
Query: 330 GATSIGMRVQAYLYDGY-WEDIGTIEAFYNAN 360
G L G+ W D GT ++ A+
Sbjct: 204 MYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 85.9 bits (211), Expect = 2e-19
Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 28/278 (10%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG GTRL T + KP V +G ++ + I + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIG-GKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ + + + A+ + E + V
Sbjct: 64 EYFANYFLHMS---------------------DVTFHMAENRMEVHHKRVEPWNVTL-VD 101
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
GD + + + + D + G+ +
Sbjct: 102 TGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPG 161
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331
+ A+ + + E+ K + + G +V++ V+ + D + E +
Sbjct: 162 RFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQEPLMTL 217
Query: 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369
G + A+ + G+W+ + T+ K P
Sbjct: 218 AQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.3 bits (203), Expect = 1e-17
Identities = 24/226 (10%), Positives = 65/226 (28%), Gaps = 24/226 (10%)
Query: 67 VSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI 126
V P + ++ + L GG GT + K + + +D+
Sbjct: 52 VVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDL 108
Query: 127 PVSNCL------NSNISKIYVLTQFNSASLNRHLSRAYASNMGGY----------KNEGF 170
V + + + + ++ + + SN+ + + F
Sbjct: 109 IVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEF 168
Query: 171 VEVLAAQQSPENPNWFQGTADAVRQYLW-----LFEEHNVLEFLVLAGDHLYRMDYERFI 225
V + ++ + + G D + F V D+L + +
Sbjct: 169 VPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL 228
Query: 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ + + + P L+ + + +++E ++ P
Sbjct: 229 KHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH 274
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 62.8 bits (151), Expect = 1e-11
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 41/264 (15%)
Query: 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
S IIL G GTR+ K + +++ + K + +
Sbjct: 1 SNFAIILAAGKGTRMKS---DLPKVLHKVA-GISMLEHVFRSVGAIQPEKTVTVVGHKAE 56
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL-WLFEEHNVLE 207
+ L+ Q + GT AV L
Sbjct: 57 LVEEVLAG--------------------QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTL 96
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+ + + I H T+ D +G + ++ ++ E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVEQ 154
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327
K ++ G + + L + + ++V
Sbjct: 155 -KDATDFEKQIKEINTGTYVFDNERLFE-------------ALKNINTNNAQGEYYITDV 200
Query: 328 IPGATSIGMRVQAYLYDGYWEDIG 351
I G +V AY + E +G
Sbjct: 201 IGIFRETGEKVGAYTLKDFDESLG 224
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 54.7 bits (130), Expect = 4e-09
Identities = 25/275 (9%), Positives = 67/275 (24%), Gaps = 61/275 (22%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IIL G GTRL PLT+ K V + LI+ + I+ I ++ +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVN-QKPLIEYQIEFLKEKGINDIIIIVGYLK---- 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ + E + + ++ V++
Sbjct: 61 -------------EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDA--- 104
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
++L++ + + + + T + ++ ++ + K
Sbjct: 105 -DNYLFKNMFRNDLTRSTYF---------SVYREDCTNEWFLVYGDDYKVQDIIVDSK-- 152
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM------LNLLRDKFPGANDFGS 325
G+ ++ + +
Sbjct: 153 ----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWD 190
Query: 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
++ L +I +++ +
Sbjct: 191 NMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 54.3 bits (129), Expect = 8e-09
Identities = 49/284 (17%), Positives = 80/284 (28%), Gaps = 37/284 (13%)
Query: 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
+++ GG G RL+PL+++ R KP +PL L++ + + +L
Sbjct: 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR--- 59
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
E A + TA AV + +
Sbjct: 60 ----------------RDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERL 103
Query: 209 LVLAGDHLYRMDY---ERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE----GRI 261
LVL DH D E + VA + T +G +++ R
Sbjct: 104 LVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRG 163
Query: 262 IEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321
F EKP + + ++ S L L
Sbjct: 164 EGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEE 223
Query: 322 DFGSEVIPGATSI-------GMRVQAYLYDGYWEDIGTIEAFYN 358
+ +P SI RV+ L W+D+G A
Sbjct: 224 VYAG--LP-KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 32/259 (12%), Positives = 67/259 (25%), Gaps = 42/259 (16%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+Y K L ++ + + +++
Sbjct: 6 VILAAGKGTRMYS---DLPKVLHTLA-GKAMVQHVIDAANELGAAHVHL----------- 50
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLA 212
G + + + GT A++Q F + + L
Sbjct: 51 --------VYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLY-- 100
Query: 213 GDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQ 272
GD + I + + +D+ + + I+E +
Sbjct: 101 GDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDAT---- 156
Query: 273 LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGAT 332
D++R + + L L + + +++I A
Sbjct: 157 -------------DEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAY 203
Query: 333 SIGMRVQAYLYDGYWEDIG 351
G + A E G
Sbjct: 204 QEGREIVAVHPQRLSEVEG 222
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 36.4 bits (83), Expect = 0.004
Identities = 32/228 (14%), Positives = 55/228 (24%), Gaps = 46/228 (20%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
I+L GG +K VP +++ + + +S +YV
Sbjct: 5 AIVLAGGKEAWAERFG-VGSKALVPYR-GRPMVEWVLEALYAAGLSPVYVGENPGL---- 58
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
G + + Q L E LV
Sbjct: 59 ------------------------VPAPALTLPDRGGLLENLEQALEHVEGR----VLVA 90
Query: 212 AGDH--LYRMDYERFIQAHRETDADITVAALPMDEKR-----ATAFGLMKIDEEGRIIEF 264
GD L + E + E R T L + G +
Sbjct: 91 TGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLL 150
Query: 265 SEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNL 312
+K K + R + + +G V+ K ++ L
Sbjct: 151 LDKS-----LFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRL 193
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.95 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.91 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.86 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.73 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.67 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.67 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.5 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.48 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.47 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.44 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.43 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.4 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.35 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.29 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.21 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.21 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.18 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.18 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.15 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.15 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.15 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.11 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.11 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.1 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.09 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.05 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.02 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.95 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.93 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.88 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.88 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.87 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.85 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.78 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.78 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.75 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.73 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.68 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.63 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.57 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.44 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.37 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.35 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.3 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.26 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.24 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.1 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.07 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.91 | |
| d2i5ea1 | 208 | Hypothetical protein MM2497 {Methanosarcina mazei | 92.97 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=3e-47 Score=381.97 Aligned_cols=306 Identities=95% Similarity=1.476 Sum_probs=267.3
Q ss_pred CCCCCcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhh
Q 009971 80 TCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA 159 (521)
Q Consensus 80 ~~~~~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~ 159 (521)
.|.+|++.+++.|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++||++|+|+++++.+++.+|+.+.+.
T Consensus 2 ~~~~~~~~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~ 81 (307)
T d1yp2a2 2 TCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA 81 (307)
T ss_dssp CCCSSCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC
T ss_pred CccCCCcCCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccc
Confidence 47788888999999999999999999999999999999987799999999999999999999999999999999999887
Q ss_pred ccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEE
Q 009971 160 SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239 (521)
Q Consensus 160 ~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~ 239 (521)
+.+......+..+++...+.+.++.|..|+++++..++..+++...++|++++||++++.|+..+++.|+.+++++++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~ 161 (307)
T d1yp2a2 82 SNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 161 (307)
T ss_dssp --------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred cccccccccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEE
Confidence 76655555566677777777777889999999999999999877778999999999999999999999999999999888
Q ss_pred EecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC
Q 009971 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (521)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~ 319 (521)
...+.++...||++.+|++++|..|.|||.......+..+..++...........++.++|+|+|++++|.+++++..+.
T Consensus 162 ~~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~ 241 (307)
T d1yp2a2 162 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 241 (307)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EecccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcccc
Confidence 87776667789999999999999999999998887888888888888777777788999999999999998888877777
Q ss_pred CCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCC
Q 009971 320 ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR 386 (521)
Q Consensus 320 ~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~ 386 (521)
..++..++++.+++++.++++++++|+|.||||+++|++||+.+++..++++. |++++++||+.++
T Consensus 242 ~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~-~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 242 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFS-FYDRSAPIYTQPR 307 (307)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSC-SCCSSSCCCCCCC
T ss_pred ccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhh-ccCCCCCccCCCC
Confidence 88899999999999899999999999999999999999999999999998888 9999999998764
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=8.9e-38 Score=309.68 Aligned_cols=234 Identities=24% Similarity=0.341 Sum_probs=193.3
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecC-ChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ +.+.+++++.....++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~g------ 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWG------ 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT------
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhccccccC------
Confidence 47999999999999999999999999999987 999999999999999999888874 4578888888755443
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+++....| .|+.||++++..+..++++ ++.||++++|++++.|+.++++.|.++++.+++++.++++ +
T Consensus 74 ---~~I~y~~q-----~~~~Gta~ai~~a~~~i~~--~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~--p 141 (292)
T d1fxoa_ 74 ---LDLQYAVQ-----PSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--P 141 (292)
T ss_dssp ---CEEEEEEC-----SSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--G
T ss_pred ---eEEEEccC-----CCCCcHHHHHHhhhhhcCC--CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCC--H
Confidence 22222223 2358999999999999874 4567888889999999999999999999999999988764 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCC-hhh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GAND-FGS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d-~~~ 325 (521)
..||++.+|++|+++.|.|||..+. ++++.+|+|+|++++++ +++...+ .+++ ..+
T Consensus 142 ~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE~eit 199 (292)
T d1fxoa_ 142 ERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGELEIT 199 (292)
T ss_dssp GGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSCCHH
T ss_pred HHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCchhhH
Confidence 7899999999999999999998653 57999999999999986 5554433 2333 458
Q ss_pred cchHhhhhCCceEEEEEec-c-eEEecCCHHHHHHHhhhcc
Q 009971 326 EVIPGATSIGMRVQAYLYD-G-YWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~-g-~w~dIgt~edy~~An~~ll 364 (521)
|+++.+++ ..++.++.+. + +|+|+||+++|++|+..+.
T Consensus 200 D~~~~~l~-~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 200 DVNRAYLE-RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp HHHHHHHH-TTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 99999998 4567776664 3 5999999999999997653
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-36 Score=300.81 Aligned_cols=232 Identities=23% Similarity=0.328 Sum_probs=188.2
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChH-HHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+||++|+|++++... .+++++.++.+++
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~g~~~g------- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFG------- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT-------
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCchHhhC-------
Confidence 7999999999999999999999999999986 999999999999999999999998764 5677777755543
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
+++....|. . ++|||+|+..+.+++++ ++.+|++++|+++..++..+++.|.++..++|+++.++++ +.
T Consensus 74 --i~I~y~~Q~--~---plGta~Ai~~a~~fi~~--~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d--P~ 142 (291)
T d1mc3a_ 74 --IQLEYAEQP--S---PDGLAQAFIIGETFLNG--EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PE 142 (291)
T ss_dssp --CEEEEEECS--S---CCCSTHHHHHTHHHHTT--SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CS
T ss_pred --cEEEEEECC--C---CCchHHHHHHHHHHhCC--CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC--cc
Confidence 223222331 2 48999999999998874 2346667777789999999999999998899999998764 78
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-hhc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GSE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~~d 326 (521)
+||++.+|++|+|+.|.|||..+. ++++.+|+|+|++++++ .++...+ .++++ .+|
T Consensus 143 ~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~EItd 200 (291)
T d1mc3a_ 143 RFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEITS 200 (291)
T ss_dssp SSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCHHH
T ss_pred cCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCceeehH
Confidence 999999999999999999998653 57999999999999997 4444333 34444 378
Q ss_pred chHhhhhCCceEEEEEe-cc-eEEecCCHHHHHHHhhhc
Q 009971 327 VIPGATSIGMRVQAYLY-DG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 327 il~~li~~~~~I~~~~~-~g-~w~dIgt~edy~~An~~l 363 (521)
+++.+++. .++..+.+ .+ +|+|+||+++|++|+..+
T Consensus 201 l~~~~l~~-~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 201 INQMYLEA-GNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHHT-TCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHc-CCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 89988884 45555555 34 699999999999999754
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=6.7e-32 Score=269.10 Aligned_cols=234 Identities=23% Similarity=0.333 Sum_probs=185.5
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (521)
.|+|||||||.||||+|+|...||||+||+|+ |||+|++++|..+|+++++|++++.. +.+++++.+...+++
T Consensus 3 ~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~----- 76 (295)
T d1lvwa_ 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGV----- 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTS-----
T ss_pred CcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccchhcCC-----
Confidence 58999999999999999999999999999886 99999999999999999999999776 555666665333221
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++. | ..+.||++|+..+...+++ ++.++++++|+++..++..++..|.+.+.++|+++.+.+. +
T Consensus 77 --~i~~v~--e-----~~~~gta~Al~~a~~~l~~--~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~--~ 143 (295)
T d1lvwa_ 77 --RFSYRV--Q-----EEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--P 143 (295)
T ss_dssp --EEEEEE--C-----SSCCCGGGHHHHTHHHHTT--SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--C
T ss_pred --EEEEEE--C-----CCCCCHHHHHHHHHHHcCC--CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCC--C
Confidence 133332 1 1138999999999988874 3567888888899999999999999999999999887654 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CC-CChhh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GA-NDFGS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~-~d~~~ 325 (521)
..||++.++++++|..|.|||..+. ++++++|+|+|++++|. ++..... .. .....
T Consensus 144 ~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~~e~~~~ 201 (295)
T d1lvwa_ 144 RPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGELEIT 201 (295)
T ss_dssp TTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSCCCHH
T ss_pred ccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcCCCeecc
Confidence 6899999998999999999997543 35899999999999986 4443222 22 22346
Q ss_pred cchHhhhhCC-ceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATSIG-MRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~~~-~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
++++.++..+ .+++.+..+.+|.|+||+++|.+|+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 202 SVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp HHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred chHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 7788777643 3556666678999999999999998765
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=5.8e-30 Score=247.83 Aligned_cols=240 Identities=20% Similarity=0.272 Sum_probs=175.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC--
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY-- 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~-- 165 (521)
|..+|||||||.||||+|+|.+.||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++++|+.+.+.......
T Consensus 1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 357999999999999999999999999999986 99999999999999999999999999999999987543221100
Q ss_pred ------------cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCC
Q 009971 166 ------------KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDA 233 (521)
Q Consensus 166 ------------~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a 233 (521)
.....+.++.... ..++.+++..+...+.. .++|+++++|.+++.++..+++.|.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTGD-------SSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGK 150 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCS-------SCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCC
T ss_pred hccccchhhhccccccceeEEeccc-------cccccchhhhhhhhccC--CCceEEeccccccccchhhhhhhhccccc
Confidence 0011122222111 37888888877665543 57799999999999999999999999888
Q ss_pred cEEEEEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHH
Q 009971 234 DITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (521)
Q Consensus 234 diti~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (521)
..+...... ...++.+... ..++..+.+.+... +++.++|+|+++++++. .+
T Consensus 151 ~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~~-~i 202 (259)
T d1tzfa_ 151 KATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LI 202 (259)
T ss_dssp SEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GC
T ss_pred ceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhhh-hc
Confidence 877766542 2345555443 45666666554322 35889999999998765 32
Q ss_pred hhhCCCCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 314 RDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 314 ~~~~~~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
. .....+..++++.+++. .++++|.++|+|.||||++||..+|..+.+...|
T Consensus 203 ~---~~~~~~~~~~l~~l~~~-~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~ 254 (259)
T d1tzfa_ 203 D---NDATTWEQEPLMTLAQQ-GELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp C---STTCCTTTHHHHHHHHT-TCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred c---cCcCccHHHHHHHHHhc-CCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCC
Confidence 2 23445668899999984 5899999999999999999999999988876544
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.9e-30 Score=253.48 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=170.9
Q ss_pred ccEEEEEEeCCCCCCCCcc-ccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 88 RSVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~Pl-T~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|++.|||||||.||||+|| |+.+||||+||.|++|||+|+++++.+ .+++++++++++..+.+.++....
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~~-------- 72 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG-------- 72 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--------
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhccc--------
Confidence 4678999999999999999 677899999986556999999999988 467899999988877665543321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccH--HHHHHHH---HhcCCcEEEEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDY--ERFIQAH---RETDADITVAAL 240 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl--~~ll~~h---~~~~aditi~~~ 240 (521)
+.++...+ ..||+.++..++..+.....+.|||++||+++..++ ...+..+ .+.+..+++...
T Consensus 73 -----~~ii~E~~-------~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 140 (268)
T d2cu2a2 73 -----IRLLLEPL-------GRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLR 140 (268)
T ss_dssp -----SEEEEESS-------CCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -----cceeeeee-------cCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecc
Confidence 12222111 278999999887665544578999999999988763 3444432 244555666665
Q ss_pred ecCcccCcceeEEEeCCCC----CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhh
Q 009971 241 PMDEKRATAFGLMKIDEEG----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g----rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~ 316 (521)
+.. .+..||++..++++ +|..|.|||+....+.+. ...+++++|||+|++++|.+.+++.
T Consensus 141 ~~~--~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~--------------~~~~~~N~Giy~f~~~~l~~~~~~~ 204 (268)
T d2cu2a2 141 PTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI--------------RKGYVWNGGVFAFAPATMAELFRRH 204 (268)
T ss_dssp CSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH--------------HTTCEEEEEEEEECHHHHHHHHHHH
T ss_pred ccc--cccccceEEeccccccchhhheeecccchhhhhhhh--------------ccCcccchhhhhcchHHHHHHHHhh
Confidence 533 46789999886543 799999999977653221 2247999999999999887666554
Q ss_pred CCCC---------CChhhcchHh---------hhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 317 FPGA---------NDFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 317 ~~~~---------~d~~~dil~~---------li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
.+.. .....+.++. .+++..++.+++++++|.|+||++++++...
T Consensus 205 ~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~~ 267 (268)
T d2cu2a2 205 LPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (268)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred hHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHhc
Confidence 4311 1111222222 2334668999999999999999999998753
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=8e-28 Score=229.04 Aligned_cols=220 Identities=14% Similarity=0.170 Sum_probs=159.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|.++|+++|+|+++|..+.+ +++.+.++
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~~-------- 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKYG-------- 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHHC--------
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhcc--------
Confidence 689999999999999999999999999999986 99999999999999999999999988887 45555442
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
++++...+ ....||+++++.+...++ ++|+++++|.+++..+.+.+ ....++..... ++
T Consensus 72 ---i~i~~~~~-----~~~~Gt~~sl~~a~~~l~----~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~--~~ 130 (229)
T d1jyka_ 72 ---VRLVFNDK-----YADYNNFYSLYLVKEELA----NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYRE--DC 130 (229)
T ss_dssp ---CEEEECTT-----TTTSCTHHHHHTTGGGCT----TEEEEETTEEESSCCCCSCC-------CSEEEEECEES--SC
T ss_pred ---cccccccc-----ccccccccccccchhhhc----ccccccccccccccchhhhh-------hccccceeeee--ec
Confidence 22332221 113899999998876664 57887777767665443221 11222222222 24
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHH---hhhC---CCCC
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKF---PGAN 321 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll---~~~~---~~~~ 321 (521)
..++.+..+++++|..+.++|.. ....+|+|+|++.....+. +... ...+
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (229)
T d1jyka_ 131 TNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186 (229)
T ss_dssp SSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTT
T ss_pred cccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcccccch
Confidence 56778888889999999988753 3677899999987654332 2211 1122
Q ss_pred ChhhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
.+..+++...++ ...++++..++ .|++|||++||.+|+..+
T Consensus 187 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 187 LYWDNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CCTTHHHHTTGG-GCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 344566676776 57888888876 599999999999998654
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=4.8e-26 Score=218.57 Aligned_cols=233 Identities=15% Similarity=0.197 Sum_probs=180.6
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
.|||||||.||||+| ..||||+||+|+ |||+|+++.|.++|+++++|++++..+.+..+.....
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~------------ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQT------------ 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTS------------
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhccccc------------
Confidence 699999999999998 579999999987 9999999999999999999999998877766654311
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
...... . ..|+..++..++..++....+.+++..+|.++. .++..+++.|......+++...+... +..
T Consensus 67 ~~~~~~-----~---~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~ 136 (250)
T d1g97a2 67 EFVTQS-----E---QLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFG 136 (250)
T ss_dssp EEEECS-----S---CCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--CTT
T ss_pred cccccc-----c---ccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc--cCC
Confidence 111111 1 278999999998888755445555666665554 66999999999999998888877653 457
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCChhhc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~~~d 326 (521)
++.+..++++.+..+.++++..... ...++.++|+|+|+...+...+..... ....+.++
T Consensus 137 ~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~ 199 (250)
T d1g97a2 137 YGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITD 199 (250)
T ss_dssp SCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGG
T ss_pred CceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhH
Confidence 8888888888999998876543221 124588999999999888766654222 23446688
Q ss_pred chHhhhhCCceEEEEEecceEEe--cCCHHHHHHHhhhcccC
Q 009971 327 VIPGATSIGMRVQAYLYDGYWED--IGTIEAFYNANLGITKK 366 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~w~d--Igt~edy~~An~~ll~~ 366 (521)
+++.+++.+.+|.++.++++|.+ |+|++|+..|++.+.++
T Consensus 200 ~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 200 VIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp HHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 99999998899999999999976 78999999998776544
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.2e-23 Score=201.90 Aligned_cols=230 Identities=17% Similarity=0.195 Sum_probs=161.1
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
.|++||||||.||||+| .+||||+||+|+ |||+|+|+.|.+.|+++|+|++++..+.+.++..+.
T Consensus 2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~----------- 66 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDD----------- 66 (248)
T ss_dssp CEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCT-----------
T ss_pred CceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeecccc-----------
Confidence 58999999999999997 689999999987 999999999999999999999999988877664431
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc--HHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d--l~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
....+... ...|+++++..+...+.. ..++++..+|..+... +..+. +.......+++..+.. +
T Consensus 67 ~~~~~~~~--------~~~g~~~~~~~~~~~i~~--~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~ 132 (248)
T d2oi6a2 67 NLNWVLQA--------EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLR--DAKPQGGIGLLTVKLD--D 132 (248)
T ss_dssp TEEEEECS--------SCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHH--HHCCTTSEEEEEEECS--C
T ss_pred cccccccc--------cCcccHHHHHhhhhhhcc--ccceeeecCccccccchhHHHHH--HHhhccccceeEEEec--C
Confidence 11212211 138999999999877654 5788899999865432 22222 2223344445544433 3
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~ 323 (521)
+..++.+..+ ++....+.+++...... ....+..+|.|.|+.+.+.+.+..... ....+
T Consensus 133 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ 194 (248)
T d2oi6a2 133 PTGYGRITRE-NGKVTGIVEHKDATDEQ-----------------RQIQEINTGILIANGADMKRWLAKLTNNNAQGEYY 194 (248)
T ss_dssp CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCC
T ss_pred Cccccccccc-cCccceeeeccCCChhh-----------------hhhhhhhhhhhccchHHHHHHHHHhhccccchhhh
Confidence 4566666654 45555554332211100 113578899999999888766653222 12234
Q ss_pred hhcchHhhhhCCceEEEEEecceEE--ecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWE--DIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~--dIgt~edy~~An~~ll~ 365 (521)
.+++++.+++.|.+|.++..+++|. .|+|++||..|++.+.+
T Consensus 195 ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 195 ITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp TTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 5889999999899999999988774 48899999999876643
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.86 E-value=1.8e-21 Score=170.52 Aligned_cols=132 Identities=89% Similarity=1.300 Sum_probs=119.2
Q ss_pred cCCCceeecccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCcccccccc---ccccccCCCcceeeCC
Q 009971 387 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD---RRFLAAKGSVPIGIGK 463 (521)
Q Consensus 387 ~~~~~~i~~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~---~~~~~~~~~~~~~Ig~ 463 (521)
++||+++.++.+.+++||+||.|+++.|.+|+||++|+||+++.|+++++++++++..+.+ ..+.++.+ +.||+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~---v~Ig~ 77 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP---IGIGK 77 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCC---SEECT
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCC---CEECc
Confidence 5799999999999999999999988888999999999999999999999999988755443 22333333 48999
Q ss_pred CCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 464 NSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 464 ~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+|+|.+++|++||+||+++++.+...+.+..+++++++|.+|+++|+++++||+||+|
T Consensus 78 ~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 78 NCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp TCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999999999999999999999998999999999999997
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=5.8e-17 Score=153.06 Aligned_cols=219 Identities=11% Similarity=0.115 Sum_probs=141.5
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++.|||||||.||||+ ...||+|+||+|+ |||+|+++.+.++ ++++|+|+++++...+.+++...+
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 67999999999999998 5789999999986 9999999999887 589999999876655433332211
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
..+.+.... .+..+++..++..+.+ .+.++++.+|. +... ++..+++........ .+...+..+
T Consensus 70 --~~v~~~~~~---------~~~~~sv~~~~~~~~~--~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~-~v~~~~~~d 135 (225)
T d1i52a_ 70 --PQITVVDGG---------DERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRD 135 (225)
T ss_dssp --TTEEEEECC---------SSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSC-EEEEEECCS
T ss_pred --cccccccCC---------cchhHHHHhhhcccCc--cceeeeeccCCCCCCHHHHHHHHhhhhhcccc-cccccceee
Confidence 123332211 3467899988877764 46788888997 5544 477776666554443 444444322
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
.. ......++......++.. .....+.+.|..+.+...++..... +...
T Consensus 136 --~~---~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~-~~~~ 184 (225)
T d1i52a_ 136 --TM---KRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNE-GATI 184 (225)
T ss_dssp --CE---EEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHT-TCCC
T ss_pred --cc---chhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhc-CCCC
Confidence 11 112222333333322211 1333466778877776665543222 2234
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
+|....+...|.++..+..+..-+.|+||+|+..|+..+
T Consensus 185 tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 185 TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 666666767788898877553346799999999998754
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.67 E-value=3.1e-16 Score=148.62 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=129.6
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
.+++.+||||||.||||+ ...||+|++|+|+ |||+|+++.+.+++ +++|+|++++....+.+.+...+
T Consensus 2 ~k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~------- 70 (226)
T d1w77a1 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI------- 70 (226)
T ss_dssp TTCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSC-------
T ss_pred CCceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhcccccc-------
Confidence 456899999999999998 4789999999987 99999999999874 78999988755433332222211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. ..+.++.. + ..+.++++.++..++. ..+.++++.||. +.+. .+..+++.+.+.+..++. .+..
T Consensus 71 -~-~~~~~~~g-----g----~~r~~sv~~~l~~~~~-~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~--~~~~ 136 (226)
T d1w77a1 71 -D-VDLRFAIP-----G----KERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLG--VPAK 136 (226)
T ss_dssp -S-SEEEEECC-----C----SSHHHHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEE--EECC
T ss_pred -c-cccccccc-----c----chhhhhhhhhHhhhcc-ccccceecccccccccHHHhhhhhhhhhccCceeec--cccc
Confidence 1 11333211 1 2257889988877653 357899999999 5554 488888888776654322 2211
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
+ ... ....++......+.. ..+..-+-+.|+.+.+.+.++.......+
T Consensus 137 d--~~~----~~~~~~~~~~~~~r~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~~~~~- 184 (226)
T d1w77a1 137 A--TIK----EVNSDSLVVKTLDRK-------------------------TLWEMQTPQVIKPELLKKGFELVKSEGLE- 184 (226)
T ss_dssp S--CCC----CBCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSCCC-
T ss_pred c--ceE----EEccCCceeecccch-------------------------hhhHHHHHHhHhhHHHHHHHHHHHhcCCC-
Confidence 1 100 011122221111100 12445567889988777665432222222
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
.+|....+...|+++..+..+..-+.|+||+|+..|+..+
T Consensus 185 ~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 185 VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp CCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred cCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 2443334444588888777654456799999999998754
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.4e-15 Score=143.43 Aligned_cols=209 Identities=17% Similarity=0.214 Sum_probs=134.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
|||||||.||||+ ...||+|++|+|+ |||+|+|+.+.++ ++++|+|+++.... +++.... .....
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~-------~~~~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRV-------FHEKV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTC-------CCTTE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhh---hHHHhhh-------ccccc
Confidence 8999999999997 5789999999987 9999999999886 58999999864432 2232211 11122
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
+.++... .+...++..++..+.....+.+++++||. +.+ ..+..+++.+.+.... +...+..
T Consensus 72 ~~~~~~~---------~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~--~~~~~~~----- 135 (221)
T d1vpaa_ 72 LGIVEGG---------DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA--TLALKNS----- 135 (221)
T ss_dssp EEEEECC---------SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE--EEEEECC-----
T ss_pred ccccccc---------ccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc--ccccccc-----
Confidence 3332211 23556777777666555678899999998 545 4488888888765533 2222211
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcch
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil 328 (521)
+. +...+ +++...+. +. ..+...+-+.|..+.+....+.. .+ .+|..
T Consensus 136 d~-~~~~~-~~~~~~~~-~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~----~~-~tD~~ 182 (221)
T d1vpaa_ 136 DA-LVRVE-NDRIEYIP-RK-------------------------GVYRILTPQAFSYEILKKAHENG----GE-WADDT 182 (221)
T ss_dssp SE-EEEEE-TTEEEEEC-CT-------------------------TEEEEEEEEEEEHHHHHHHHTTC----CC-CSSSH
T ss_pred ce-eEeec-Cccceecc-hH-------------------------HHHHhhhhhhhhHHHHHHHHHhC----CC-CccHH
Confidence 11 22221 22222221 10 12556677788887777655421 22 25556
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
..+...+.++..+..+...+.|+|++|+..|+..+
T Consensus 183 ~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~ll 217 (221)
T d1vpaa_ 183 EPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA 217 (221)
T ss_dssp HHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred HHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHH
Confidence 66667788888877655556899999999887654
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.63 E-value=8.4e-15 Score=138.46 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=127.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
++..|||||||.|+||+ ...||+|++|+|+ |||+|+++.+.+++ +++|+|++... +.+.+++...+..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~~------ 70 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFPQ------ 70 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCTT------
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccccc------
Confidence 35679999999999997 5789999999987 99999999999876 57777777544 3445555553321
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhh----cCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEE
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE----HNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~----~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~ 240 (521)
...+... + ....+++..++..+.+ ...+.+++++||. +.+. .+..+++.+...+.+.++..
T Consensus 71 ---~~~~~~g-----~----~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~- 137 (226)
T d1vgwa_ 71 ---VRVWKNG-----G----QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAV- 137 (226)
T ss_dssp ---SEEECCC-----C----SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEE-
T ss_pred ---eeecccc-----c----cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeecc-
Confidence 1222211 1 2234555555543322 2456788999998 6654 48899998877776654433
Q ss_pred ecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
+.. ...... +++.+....++... .....-..|..+.+.+.+... ..
T Consensus 138 ~~~------~~~~~~-~~~~i~~~~~r~~~-------------------------~~~~~p~~f~~~~l~~~~~~~--~~ 183 (226)
T d1vgwa_ 138 PVA------DTLKRA-ESGQISATVDRSGL-------------------------WQAQTPQLFQAGLLHRALAAE--NL 183 (226)
T ss_dssp ECC------SCEEEE-SSSBEEEEECCTTE-------------------------EEEEEEEEEEHHHHHHHHHC-----
T ss_pred ccc------ccceec-cCCeEEeccchHHH-------------------------HHHHhhhcccHHHHHHHHHHh--hc
Confidence 322 112223 45677666544321 111123466766666555431 12
Q ss_pred CChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
.++ +|....+...+.++..+..+...+.|+||+|+..|...+
T Consensus 184 ~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll 225 (226)
T d1vgwa_ 184 GGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL 225 (226)
T ss_dssp -CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHh
Confidence 222 455555555688888877665568899999999997643
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.50 E-value=1.4e-12 Score=124.18 Aligned_cols=237 Identities=15% Similarity=0.153 Sum_probs=149.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
..|||+|.|.++|+.- |+|.+|+|+ |||+|+++.+.++++++|+|.+ .++.+.++..+ +.. .
T Consensus 2 ~i~iIpAR~gSkrip~------KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsT--d~~~i~~~~~~-~g~--------~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLPG------KPLVDINGK-PMIVHVLERARESGAERIIVAT--DHEDVARAVEA-AGG--------E 63 (246)
T ss_dssp CEEEEECCCCCC--CC------TTTCEETTE-EHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHH-TTC--------E
T ss_pred EEEEEecCCCCcCCCC------chhhhcCCc-cHHHHHHHHHHHcCCCcEEEEe--cCccccchhhc-ccc--------c
Confidence 4699999999999852 999999997 9999999999999999999999 45667776665 211 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCccc-
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKR- 246 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~- 246 (521)
+...... . ..|+ +.+..+.........+.++.+.||. +.+ .++..+++.+.....+......+.....
T Consensus 64 -v~~~~~~----~---~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 134 (246)
T d1vh1a_ 64 -VCMTRAD----H---QSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEE 134 (246)
T ss_dssp -EEECC------------CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHH
T ss_pred -ceeeccc----c---cccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhc
Confidence 2222111 1 1445 4444444433333456889999999 444 4588899988888877666665543211
Q ss_pred --CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 247 --ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 247 --~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
......+..+.+|++..+.+.+.......... ........++...|+|+|+++.|...... .++..+-.
T Consensus 135 ~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~~E~~ 205 (246)
T d1vh1a_ 135 AFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHI 205 (246)
T ss_dssp HTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS--------CCCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH
T ss_pred ccCCCcceeeecccCcccccccccchhhhhhhhh--------hhhccchhhheecceeeechhhhhhhccC-CCChHHHH
Confidence 11223455678899998886544322110000 00011234678899999999988755431 11111111
Q ss_pred h--cchHhhhhCCceEEEEEecce-EEecCCHHHHHHHhhhc
Q 009971 325 S--EVIPGATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGI 363 (521)
Q Consensus 325 ~--dil~~li~~~~~I~~~~~~g~-w~dIgt~edy~~An~~l 363 (521)
+ |.+ ++++.|.++.++..+.. ..||||++||..|...|
T Consensus 206 e~le~l-R~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 206 EMLEQL-RVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HTCTTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred HhHHHH-HHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 1 223 34556999999988764 68999999999998654
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.48 E-value=1.2e-13 Score=133.41 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=56.6
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||+++.|. ++.|+++|.||+++++.+...+...++++++++|+.+. ++||++|+|++||+|
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V 177 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV 177 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence 6799999997 79999999999999999999999999999999999884 678889999988875
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.47 E-value=4.6e-12 Score=120.85 Aligned_cols=243 Identities=14% Similarity=0.122 Sum_probs=150.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.|||+|.|.++|+.. |.|.+|+|+ |||+|+++.+.++++++|+|++. ++++.+...+ +..
T Consensus 2 ~~~iIpAR~gSkRlp~------Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd--~~~i~~~~~~-~~~--------- 62 (255)
T d1vica_ 2 FTVIIPARFASSRLPG------KPLADIKGK-PMIQHVFEKALQSGASRVIIATD--NENVADVAKS-FGA--------- 62 (255)
T ss_dssp CEEEEECCCCCSSSTT------GGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TTC---------
T ss_pred EEEEEecCCCCCCCCC------chhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcC--Ccccchhhhh-hcc---------
Confidence 4799999999999742 999999987 99999999999999999988884 4455555444 211
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc--
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK-- 245 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~-- 245 (521)
.+...... ...|+..+.. +.........+.++.+.||. +.+ .++..+++.+.......+.........
T Consensus 63 ~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 134 (255)
T d1vica_ 63 EVCMTSVN-------HNSGTERLAE-VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEE 134 (255)
T ss_dssp EEEECCCS-------SCCHHHHHHH-HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHH
T ss_pred ccceeeec-------cCCcchhhHH-HHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhh
Confidence 12222111 1244544443 33333222456788899999 444 458889999888877766665543221
Q ss_pred -cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 246 -RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 246 -~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
..........++++++..+.+.+.......... ............+....|+|+|+++.+..+... .+...+..
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~le~~ 209 (255)
T d1vica_ 135 LFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMN----LQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLENL 209 (255)
T ss_dssp HTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTT----CSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH
T ss_pred ccCccceeeeeccCCcccccccccccccchhhhh----ccchhhcccccchheeeeeecccHHHHhhhhcc-CCChhHHH
Confidence 122334556677889988887654322111000 000011112234677899999999988765431 11111111
Q ss_pred hc--chHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhccc
Q 009971 325 SE--VIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 325 ~d--il~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll~ 365 (521)
+. .+ +++..|.+|..+..+. .+.||||++||..|+..+..
T Consensus 210 e~le~l-r~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilkk 252 (255)
T d1vica_ 210 EKLEQL-RVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 252 (255)
T ss_dssp HTCTTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred HhHHHH-HHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHHH
Confidence 11 12 2345588999888865 47899999999999876543
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.44 E-value=6.8e-12 Score=118.98 Aligned_cols=229 Identities=15% Similarity=0.236 Sum_probs=143.2
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+.-|||+|.|.++||. .|+|++|+|+ |||+|+++++.++ ++++|+|++. .+.+.+.... +.
T Consensus 2 k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~~-~~-------- 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATD--DPRVEQAVQA-FG-------- 63 (245)
T ss_dssp CEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEecc--cccchhhhhh-cC--------
Confidence 4679999999999985 3999999997 9999999999886 5888888874 3444444443 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEec-Cc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPM-DE 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~-~~ 244 (521)
.+++.... . ..++.+.+..++..++ .+.++++.||. +.+ .++..+++.+.............. ..
T Consensus 64 ---~~~~~~~~--~----~~~~~~~~~~~~~~~~---~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 131 (245)
T d1h7ea_ 64 ---GKAIMTRN--D----HESGTDRLVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISA 131 (245)
T ss_dssp ---CEEEECCS--C----CSSHHHHHHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECH
T ss_pred ---ceEEEecC--c----cccccHHHHHHHHhcC---CCEEEEecchhhhcccccchhhhhccccccccccccccccccc
Confidence 12221111 1 1345566666665554 47788899999 444 348888888876655433333221 11
Q ss_pred -c-cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 245 -K-RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 245 -~-~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
. .......+.....+.+..+...+....... ........+|+|.|+++.|.++... .+...+
T Consensus 132 ~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~g~~~~~~~~l~~~~~~-~~s~~e 195 (245)
T d1h7ea_ 132 AEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYSQL-PESMPE 195 (245)
T ss_dssp HHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGGGS-CCCHHH
T ss_pred ccccCCcceeeccchhhhhhhhhhhhhhhhhcc---------------cccccceeeeeEEeeeccccccccc-cCChhh
Confidence 0 111222334445566777765544321110 1124578899999999988755431 111111
Q ss_pred hhh--cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 323 FGS--EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 323 ~~~--dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
..+ |.+. +++.|.+++++..++.|.+|||++||..|...+.
T Consensus 196 ~~e~ie~lr-~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~ 238 (245)
T d1h7ea_ 196 QAESLEQLR-LMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHHTCTTHH-HHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred hhhhHHHHH-HHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 111 2233 5556999999999888999999999999987654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=6.3e-13 Score=128.15 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=88.4
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
.+++++.|..++.+.|.+.+. .++.||++|+|++ |.|. ++.||+++.|.+++.|+. .+..++
T Consensus 8 iI~~~a~Ig~~V~IG~~~vIg----~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~ 83 (259)
T d1j2za_ 8 IISPKAEINKGVEIGEFCVIG----DGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE 83 (259)
T ss_dssp EECTTSEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecc
Confidence 344444444444444444432 4577777777776 6666 677777777777777742 222332
Q ss_pred ccc--ccccc-ccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEEC
Q 009971 440 DYY--ETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTII 510 (521)
Q Consensus 440 ~~~--e~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~ 510 (521)
+-+ |.... ..+..+.+. +.||+++.+. ++.+++++.||+++.+.+...+...++++++++|+.+. ++||
T Consensus 84 ~~~i~~~~~i~~~~~~~~~~--t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG 161 (259)
T d1j2za_ 84 DNLIREFCMINPGTEGGIKK--TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIA 161 (259)
T ss_dssp SCEECTTCEECCCCTTTTSE--EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred cccccccccccccccccccc--ccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEec
Confidence 211 11110 111111122 6788888886 78888888888888888877777777777777777662 6788
Q ss_pred CCCEECCCccC
Q 009971 511 KDALIPSGTII 521 (521)
Q Consensus 511 ~~~~i~~gsvi 521 (521)
++|+|++||+|
T Consensus 162 ~~a~IgagSvV 172 (259)
T d1j2za_ 162 KGCMIAGKSAL 172 (259)
T ss_dssp TTCEECTTCEE
T ss_pred cceeeeeeeee
Confidence 88888888875
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=1.7e-13 Score=129.49 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=88.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+..|||||||.|+||++++. .||+|+||+|+ |||+|+++++.++++++|++++++....
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~------------------ 60 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVP------------------ 60 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSS------------------
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccc------------------
Confidence 467899999999999998874 48999999987 9999999999999999998888654311
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEe
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALP 241 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~ 241 (521)
...... . +..|+.++++.++..++ +++++++||. +++. .++.+++.+.+ .+..+.+.+
T Consensus 61 -~~~~~~---~------~~~~~~~~v~~al~~~~----~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 120 (231)
T d2dpwa1 61 -APALTL---P------DRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVP 120 (231)
T ss_dssp -CCSEEE---C------CCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEE
T ss_pred -eeeeec---c------cchHHHHHHHHHHHhhc----CceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEe
Confidence 001111 1 12689999999987664 6899999999 5554 48888876543 444444443
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.35 E-value=6.9e-13 Score=123.24 Aligned_cols=197 Identities=18% Similarity=0.240 Sum_probs=120.5
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++.+||||||.|+||+ ...||+|++++|+ |||+|+++++.+.. +++|+|++. +.+. +.+ +.
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~-~~~~----~~~-~~-------- 62 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITY----MKK-FT-------- 62 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHH----HHT-TC--------
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhccccccccccc-cccc----ccc-cc--------
Confidence 3679999999999998 4689999999987 99999999999865 677877764 3222 222 10
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.. +.++... ..-.++++.++..++ .+.+|+..||. +++.+ +.++++.+.+. ++.+.+.+..+.
T Consensus 63 ~~-~~~v~Gg---------~~r~~Sv~~gl~~~~---~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~~~dt 127 (205)
T d1w55a1 63 KN-YEFIEGG---------DTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVADT 127 (205)
T ss_dssp SS-SEEEECC---------SSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCSC
T ss_pred cc-ccccccc---------cchhhhhhhhhhhhh---hcceeeeccCcccCcHHHHHHHHhhhhcc--cccccccccccc
Confidence 01 2232211 224578888887764 47899999999 77655 88888876544 444555543321
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
+..+. +......... .+.+ -+|+.+.|.+.++. ..++ +
T Consensus 128 -------i~~~~--------~~~~R~~l~~---------------~qTP-------Q~f~~~~l~~a~~~----~~~~-t 165 (205)
T d1w55a1 128 -------TLFDN--------EALQREKIKL---------------IQTP-------QISKTKLLKKALDQ----NLEF-T 165 (205)
T ss_dssp -------EEETT--------EEECGGGCCE---------------ECSC-------EEEEHHHHHHHTSS----CCCC-S
T ss_pred -------ccccc--------ccccchheee---------------eecc-------hhhhhHHHHHHHHc----CCCC-C
Confidence 11111 0000000000 0001 14667666655432 2222 4
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
|-...+...+.++..++-+..-+-|.+++|+..|+
T Consensus 166 Dd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~e 200 (205)
T d1w55a1 166 DDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 200 (205)
T ss_dssp SHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred cHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhc
Confidence 44444555578888877666667899999987765
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.29 E-value=1e-11 Score=115.65 Aligned_cols=132 Identities=15% Similarity=0.279 Sum_probs=90.5
Q ss_pred cCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-----eeEECCCCEECCCCEEcceEEECCcc-------c
Q 009971 376 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADY-------Y 442 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-----~s~ig~~~~Ig~~~~I~~s~i~~~~~-------~ 442 (521)
.....|.+++.+.|.+.+ +.++.||++|+|+. |.|+ ...||++|.|+++|+|......+.+- .
T Consensus 20 ~~~p~I~~~a~I~p~A~i----~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~ 95 (210)
T d1qrea_ 20 PSAPVIDPTAYIDPQASV----IGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIV 95 (210)
T ss_dssp CCCCEECTTCEECTTCEE----EESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCE
T ss_pred CCCCccCCCCEECCCCEE----ecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccc
Confidence 334456777777777766 35778888888887 7773 46899999999999886433222110 0
Q ss_pred -cccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe----EEECCCCEEC
Q 009971 443 -ETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI----VTIIKDALIP 516 (521)
Q Consensus 443 -e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~----v~I~~~~~i~ 516 (521)
.......+.||+++ .||+++.|. +|.||+++.||.++++.+ .++|++++|+.+. .+|++++.|+
T Consensus 96 ~~~~~~~~~~IG~~v---~IG~~~~i~g~~~IGd~~~IG~gs~i~~-------~~IG~~~vIg~~svv~g~~i~~g~~I~ 165 (210)
T d1qrea_ 96 EVDGKEYAVYIGNNV---SLAHQSQVHGPAAVGDDTFIGMQAFVFK-------SKVGNNCVLEPRSAAIGVTIPDGRYIP 165 (210)
T ss_dssp EETTEEESEEECTTC---EECTTCEEEEEEEECTTCEECTTCEEEE-------EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred cccccccceeecccc---ccccccccccCCcccCCcEeeCCccccc-------cccccCcEEecCcEecCcEeCCCcEEC
Confidence 01112456777776 889999987 799999999999999976 3455566655442 4577788888
Q ss_pred CCccC
Q 009971 517 SGTII 521 (521)
Q Consensus 517 ~gsvi 521 (521)
+|+++
T Consensus 166 ~g~~v 170 (210)
T d1qrea_ 166 AGMVV 170 (210)
T ss_dssp TTCEE
T ss_pred CCcEE
Confidence 87764
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.21 E-value=1.6e-10 Score=107.51 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=135.0
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
++.-|||+|.|.++|+. .|+|++|+|+ |||+|+++.+.+++ +++|+|.+ ..+.+.+.+.+ +..
T Consensus 3 ~~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~-~~~------ 66 (225)
T d1eyra_ 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVST--DGGLIAEEAKN-FGV------ 66 (225)
T ss_dssp CEEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TTC------
T ss_pred CCEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEee--ccchhhhhhhh-hcc------
Confidence 45678999999999984 3999999987 99999999999987 68888877 45566665544 221
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
. + +........ ...++.+.+..+...+.. ..+.++.+.||. +.+ .++.++++.+.+.+.+..+.+.+...
T Consensus 67 --~-~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~ 138 (225)
T d1eyra_ 67 --E-V-VLRPAELAS---DTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138 (225)
T ss_dssp --E-E-EECCHHHHS---TTCCHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS
T ss_pred --e-e-eeecccccc---ccccchhhcccccccccc-ccceEEEeeccccccccccccccceeeccccccccceeecccc
Confidence 1 1 111111001 114566667766655543 357899999999 555 45999999888888776555554432
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
. ..+..+ ..+++.+..+........ ... .....+..+.++|+++++.+...-. +
T Consensus 139 ~--~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~y~~~g~iy~~~~~~l~~~~~--------~- 192 (225)
T d1eyra_ 139 H--PLKTLL-QINNGEYAPMRHLSDLEQ-PRQ-------------QLPQAFRPNGAIYINDTASLIANNC--------F- 192 (225)
T ss_dssp C--TTSCEE-ECSSSCEEESSCGGGGTS-CGG-------------GSCCEEEEEEEEEEEEHHHHHHHTS--------S-
T ss_pred c--cccccc-cccccccccccccccccc-ccc-------------cCcceeeecceeEEeeHHHHHHcCC--------c-
Confidence 1 123333 334566655543221110 000 0112357888999999987753210 0
Q ss_pred hcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 325 SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
.+.++..+..+. ..+||+|++||..|...+
T Consensus 193 ---------~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 193 ---------FIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp ---------CCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred ---------cCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 033455565543 358999999999997644
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.21 E-value=4.8e-11 Score=114.89 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=19.7
Q ss_pred EECCCcEEeCCCccCCceeecCCeEEcCC-----eEEECCCCEECCCcc
Q 009971 477 RIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTI 520 (521)
Q Consensus 477 ~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g-----~v~I~~~~~i~~gsv 520 (521)
.||+++.+.+...++.++.+|+++++..+ .++||++|+||+++.
T Consensus 110 ~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~ 158 (262)
T d2jf2a1 110 KVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTA 158 (262)
T ss_dssp EECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCce
Confidence 34444444333333334444444433322 155666666666554
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=7.7e-11 Score=107.67 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=70.1
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCC----------------CEECCCCEEcceEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR----------------SCISEGAIIEDTLL 436 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~----------------~~Ig~~~~I~~s~i 436 (521)
++++++.|.+++.++|++.+. .++.||++|.|++ +.|.++.||++ +.||+++.+.+...
T Consensus 10 ~I~~~v~Ig~~~~I~~~vvI~----~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~ 85 (196)
T d1g97a1 10 YIDIDVEIASEVQIEANVTLK----GQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSS 85 (196)
T ss_dssp EECTTCEECTTCEECTTCEEE----SSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCE
T ss_pred EECCCcEECCCCEECCCCEEC----CCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceecccccc
Confidence 566666676667676666654 2344555555554 44444444444 34444444433332
Q ss_pred ECCccc-ccc-ccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeE
Q 009971 437 MGADYY-ETD-ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIV 507 (521)
Q Consensus 437 ~~~~~~-e~~-~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v 507 (521)
++.... ... ......++... .+++++.+.++.++.++.++.+++...... +++.+.++.++.|..+ +
T Consensus 86 i~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~g-v 161 (196)
T d1g97a1 86 LGAQVHIGNFVEVKGSSIGENT---KAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP-V 161 (196)
T ss_dssp ECTTCEEEEEEEEESCEECTTC---EEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-C
T ss_pred cccceeecccccceeeecCcce---EecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCC-c
Confidence 222110 000 00111112222 344445555566666677777666554333 2344444444445555 7
Q ss_pred EECCCCEECCCccC
Q 009971 508 TIIKDALIPSGTII 521 (521)
Q Consensus 508 ~I~~~~~i~~gsvi 521 (521)
+||++++|++||+|
T Consensus 162 ~IG~~s~IgagsvV 175 (196)
T d1g97a1 162 ELGDNSLVGAGSTI 175 (196)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEE
Confidence 78889999888875
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.4e-11 Score=109.34 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=76.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|.++.|||||||.|+||+ ..||+|++++|+ |||+|+++.+... +.+|+|+++.+.+... . +
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~----~-~-------- 61 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIYQ----A-S-------- 61 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHHH----T-T--------
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhhh----h-c--------
Confidence 457899999999999998 358999999987 9999999999876 6788888876643211 1 1
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHH
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (521)
+ +.+..... ++ ..|...++..+.... ..+.+++++||+ +.+.+ +..+++.
T Consensus 62 ~---~~v~~d~~----~~-~~~~~~g~~~~~~~~---~~~~vlv~~~D~P~i~~~~i~~L~~~ 113 (188)
T d1e5ka_ 62 G---LKVIEDSL----AD-YPGPLAGMLSVMQQE---AGEWFLFCPCDTPYIPPDLAARLNHQ 113 (188)
T ss_dssp S---CCEECCCT----TC-CCSHHHHHHHHHHHC---CSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred C---CCcccccc----cc-ccchhHHHHHHHHhc---ccceEEEeccCCCCCCHHHHHHHHHh
Confidence 0 11222111 11 145666776665443 357899999999 66655 6666553
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.15 E-value=5.4e-11 Score=107.07 Aligned_cols=122 Identities=19% Similarity=0.302 Sum_probs=74.9
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADR 448 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~ 448 (521)
|.+....|.+++.+.|.+.+. .++.||++|.|+. |.|. ...||+++.+++++.+..... .
T Consensus 8 ~~~~~~~Ig~~~~I~~~a~I~----~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~-----------~ 72 (172)
T d1xhda_ 8 YKEKKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQ-----------Y 72 (172)
T ss_dssp BTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTT-----------C
T ss_pred cCCcCCEECCCcEECCCCEEe----CCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCc-----------C
Confidence 335555666666677766653 3566666666665 5554 257777777777777654311 1
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+.++.. +.++.++.+.++.|++++.||.++++.. ++++|++++|++| .+|.++..||++++
T Consensus 73 ~~~ig~~---~~~~~~~~~~~~~i~~~~~ig~~~~i~~------gv~IG~~~~Igag-svV~~~~~i~~~~v 134 (172)
T d1xhda_ 73 PLILEDD---VTVGHQVILHSCHIKKDALIGMGSIILD------GAEIGEGAFIGAG-SLVSQGKKIPPNTL 134 (172)
T ss_dssp CEEECTT---CEECTTCEEESCEECTTCEECTTCEECT------TCEECTTCEECTT-CEECTTCEECTTEE
T ss_pred Ceeeeee---eeeeeeecccccccccceEEecccEeeC------CcEEcCcccccce-EEEeeCeEECCCeE
Confidence 1122222 2556666666666777777777766665 4667777777777 66666677777665
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.15 E-value=1.5e-10 Score=106.12 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++++. ++.++.++.||++|+|.....+.++.++|++++|++|
T Consensus 126 ~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~Igag 172 (193)
T d3bswa1 126 VIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGG 172 (193)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCC
Confidence 344444443 3444444444444444443333334455555555555
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.15 E-value=1.3e-10 Score=111.65 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=62.6
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccc---cccccccccccCCCcceeeCCCCEEe------
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY---ETDADRRFLAAKGSVPIGIGKNSHIK------ 468 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~---e~~~~~~~~~~~~~~~~~Ig~~~~i~------ 468 (521)
+++|+++++|++ |.|. +++|+.+|+||++|.|.+...++.+-. .........++.+. .+++++.+.
T Consensus 24 ~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~~---~i~~~~~i~~~~~~~ 100 (259)
T d1j2za_ 24 FCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDN---LIREFCMINPGTEGG 100 (259)
T ss_dssp TCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSC---EECTTCEECCCCTTT
T ss_pred CCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecccc---ccccccccccccccc
Confidence 455555565555 5555 555555666666666655444443210 00011222233333 344444432
Q ss_pred --eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 --RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 --~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.|++++.|+.++.+.....+++.+.+..++.++.+ ++||++|.||.+++|
T Consensus 101 ~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~-v~Ig~~v~IG~~s~I 154 (259)
T d1j2za_ 101 IKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAI 154 (259)
T ss_dssp TSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred cccccccCceEEeccccccceecccceeeeecccccccc-ccccccceecceeee
Confidence 3566666666666666655555555555555555555 777777777777654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=7.6e-10 Score=103.18 Aligned_cols=218 Identities=12% Similarity=0.148 Sum_probs=129.3
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
++++.|||+|.|.++||. -|+|.+|+|+ |||+|+++++.+++ +++|+|.+ .++.+.+.... +..
T Consensus 1 ~~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivst--d~~~i~~~~~~-~~~----- 65 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQ-FGA----- 65 (228)
T ss_dssp CCCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TTC-----
T ss_pred CCCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEec--chhhhhhhhhh-cCc-----
Confidence 357999999999999994 3999999987 99999999998876 78888877 34555555554 211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. +........ .+ .....+.+.+++...+ ..+.++++.+|. +.. .++.++++.+...+.+..+.+....
T Consensus 66 ---~-~~~~~~~~~-~~---~~~~~~~i~~~~~~~~--~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~ 135 (228)
T d1qwja_ 66 ---Q-VHRRSSETS-KD---SSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRH 135 (228)
T ss_dssp ---E-EEECCGGGS-ST---TCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEEC
T ss_pred ---c-ccccccccc-cc---cchhhhhhhhcccccc--ccceeeeecccccccCchhhhhhhhhhhccCccccccccccc
Confidence 1 111111111 11 1345666666654333 357788889999 444 5699999999988888766655432
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
. ..+..+.....+........+... .. .+ .....+..+.++|+++.+++. ... +
T Consensus 136 ~---~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~q-d~~~~y~~ng~~~~~k~~~~~---~~~------~ 189 (228)
T d1qwja_ 136 Q---FRWSEIQKGVREVTEPLNLNPAKR-PR------------RQ-DWDGELYENGSFYFAKRHLIE---MGY------L 189 (228)
T ss_dssp C---CEECCCCSSTTCCCCBSSSBTTBC-CC------------TT-TSCCEEEEEEEEEEEEHHHHH---TTC------S
T ss_pred c---ccchhhhhhccccccchhhhhhhc-cc------------cc-cccceeeeeeEEEEEeHHHHh---hCC------c
Confidence 1 111111111111110000000000 00 00 011135677778888887654 111 1
Q ss_pred hhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll~ 365 (521)
.+.++..|..+. ..+||+|++|+..|...+.+
T Consensus 190 ----------~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 190 ----------QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp ----------SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ----------CCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 144677777654 35799999999999876654
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=3.9e-09 Score=105.85 Aligned_cols=255 Identities=12% Similarity=0.097 Sum_probs=159.2
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCC-ceEEEEecCC-hHHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFN-SASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi-~~I~Iv~~~~-~~~i~~~l~~~~~~ 160 (521)
..++.+|+||||.||||+ ...||.++||+.++++++..++++.. .|. -.++|.+++. .+.+.+|+++...+
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f 148 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 148 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC
Confidence 368999999999999997 57999999997556999999999864 332 2567777754 58899999884433
Q ss_pred cCCCC-cCCCcEEE--------eecccCCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCeeccccHHHHH
Q 009971 161 NMGGY-KNEGFVEV--------LAAQQSPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERFI 225 (521)
Q Consensus 161 ~~~~~-~~~~~v~v--------l~~~q~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll 225 (521)
++... |.+..+.- +.....+....| +.|.++..... ++.+.....+++.+.+.|.+....-..++
T Consensus 149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~l 228 (378)
T d2icya2 149 NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL 228 (378)
T ss_dssp SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHH
T ss_pred CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHH
Confidence 32110 11111111 110111111124 56888766543 23344456789999999997764445688
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEe
Q 009971 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (521)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (521)
..|.++++++++-+.+....+...-.++..|..-+|+++.|.|.......-. ...-.+.+++.++|+
T Consensus 229 G~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~~~-------------~~~~~~~N~nn~~~~ 295 (378)
T d2icya2 229 KHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKS-------------IEKFKIFNTNNLWVN 295 (378)
T ss_dssp HHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHS-------------SSSCCEEEEEEEEEE
T ss_pred HHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhhcC-------------CcCcceeeeeeeeee
Confidence 8999999999888876544344444455566556788888888654321100 011236899999999
Q ss_pred HHHHHHHHhhhCCC-----------------CCChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhh
Q 009971 306 KDVMLNLLRDKFPG-----------------ANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANL 361 (521)
Q Consensus 306 ~~vl~~ll~~~~~~-----------------~~d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~ 361 (521)
-+.++++++..... .+.|.-++++.. .+..++.++ ..+.-+.+..|++.+..
T Consensus 296 l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~d~~~~~----~~~~~~eV~R~rF~PvKn~sDll~~~s 365 (378)
T d2icya2 296 LKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF----DNAIGVNVPRSRFLPVKASSDLLLVQS 365 (378)
T ss_dssp HHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGS----TTCEEEECCGGGCCBCCSHHHHHHHHS
T ss_pred HHHHHHHHhhccCCCceEecCcCCCCCCeeehhhHHHHHHHhC----CCcEEEEecccccCCCCChHHHHHHhh
Confidence 99998887643211 112233444332 133444443 35777778887765543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.10 E-value=5.5e-10 Score=100.26 Aligned_cols=102 Identities=21% Similarity=0.354 Sum_probs=81.9
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEee-----
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR----- 469 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~----- 469 (521)
+..||++|+|++ +.|. ++.||++|.|+++|+|... +.+++ + +.|++++.+..
T Consensus 12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~---------------~---~~i~~~~~~~~~~~~~ 73 (172)
T d1xhda_ 12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGD---------------R---VNVQDQCTLHQSPQYP 73 (172)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECCTTCC
T ss_pred CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccc---------------e---eeeeeeceeccCCcCC
Confidence 456888888887 7776 7999999999999999653 33333 3 36777777753
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++++++.++.++.+. ...+++.+.++.++.|..| ++||++|+|++||+|
T Consensus 74 ~~ig~~~~~~~~~~~~-~~~i~~~~~ig~~~~i~~g-v~IG~~~~IgagsvV 123 (172)
T d1xhda_ 74 LILEDDVTVGHQVILH-SCHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (172)
T ss_dssp EEECTTCEECTTCEEE-SCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred eeeeeeeeeeeeeccc-ccccccceEEecccEeeCC-cEEcCcccccceEEE
Confidence 7888888888888885 4578888889999999999 999999999999985
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=1.3e-10 Score=104.47 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=66.4
Q ss_pred cCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccccc
Q 009971 376 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 450 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~ 450 (521)
+.+..|.+++.+.|.+.+. .++.||++|.|+. |.|. ...|++++.+++++.+..+...
T Consensus 8 g~~~~I~~~~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~------------- 70 (173)
T d1v3wa_ 8 GKKPRIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGY------------- 70 (173)
T ss_dssp TBCCEECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTB-------------
T ss_pred CCCCEECcCcEECCCCEEe----CceEECCCCEECCCccccccccccccccccccccccccccccCC-------------
Confidence 4445555556666655552 3556666666665 5554 3456666666666655432111
Q ss_pred cccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 451 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.++.++.+....+..++.||++++|.....+.+++++|++++|++| .+|.++..||+++++
T Consensus 71 -------~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgag-svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 71 -------PTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAG-AVVPPNKEIPDYSLV 133 (173)
T ss_dssp -------CEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTT-CEECTTCEECTTEEE
T ss_pred -------CcccCcceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCC-cEEeCCeEeCCCCEE
Confidence 123344343333333333334444444333333445677788888888 777888888887763
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.7e-10 Score=88.40 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=50.9
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
++.||++|.|++ +.|+ ++.||++|+||++|+|+++.++++ +.|+++++|++|+|+++|.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 466777777776 7777 688999999999999988888776 5888888888888888888
Q ss_pred ECC
Q 009971 478 IGD 480 (521)
Q Consensus 478 Ig~ 480 (521)
||+
T Consensus 75 IGP 77 (78)
T d1fxja1 75 IGP 77 (78)
T ss_dssp ESC
T ss_pred ECc
Confidence 886
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.02 E-value=7e-10 Score=102.95 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=65.5
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcc----eEEECCccccccccccccccCCCcceeeCCCCEE--------
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED----TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-------- 467 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~----s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-------- 467 (521)
.|+++|+|.+ +.|. ++.||++|.||++|+|+. .+.++ +++ .|+++++|
T Consensus 24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG---------------~~~---~I~~~~~I~~~~~~~~ 85 (210)
T d1qrea_ 24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVG---------------DRS---NVQDGVVLHALETINE 85 (210)
T ss_dssp EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEEC---------------TTC---EECTTCEEEECCSBCT
T ss_pred ccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEc---------------ccc---eeeeeeEeccceeecc
Confidence 4677777776 4444 788999999999998842 33333 333 55666655
Q ss_pred ----------------eeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 468 ----------------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 468 ----------------~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
..++||+++.||.++.|.+...+++.+.||.+++|.. .+||++|+|++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~--~~IG~~~vIg~~svv 153 (210)
T d1qrea_ 86 EGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 153 (210)
T ss_dssp TSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred ccccccCccccccccccceeeccccccccccccccCCcccCCcEeeCCccccc--cccccCcEEecCcEe
Confidence 2477888888888888865444555555555554443 368999999887753
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.95 E-value=9.2e-10 Score=100.27 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=12.2
Q ss_pred ecCCeEEcCCeEEECCCCEECCCcc
Q 009971 496 ETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 496 ~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++++++|+.+ ++|.+++.||.|++
T Consensus 145 Ig~~~~iG~~-~~I~~gv~IG~~s~ 168 (196)
T d1g97a1 145 IGNNVFVGSN-STIIAPVELGDNSL 168 (196)
T ss_dssp ECTTCEECTT-CEEESSCEECTTCE
T ss_pred EecCCEEeee-eEEcCCcEECCCCE
Confidence 3444555555 55555555555554
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=2.5e-09 Score=97.98 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=39.7
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.|++.+.+.++.++.++.++.++...+..+ +++.++++.++.|..+ ++||++|+|++||+|
T Consensus 109 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 109 KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred EEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECCCCEECCCCEE
Confidence 344444445567777777777776665442 3444445555555555 889999999999875
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.7e-09 Score=99.38 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=40.4
Q ss_pred cccCCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcceEEE
Q 009971 380 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLM 437 (521)
Q Consensus 380 ~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~i~ 437 (521)
.+..++.+.||+.+.. -.++.||++|+|+. |.|. ...||++|.||++|.|......
T Consensus 56 ~iG~~~~I~p~~~i~~--G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~ 115 (200)
T d1krra_ 56 TVGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHP 115 (200)
T ss_dssp BCCSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECC
T ss_pred cCCCCCEEcCCEEEec--CCccEECCccEECceEEEecCCCcEeCCCccccceeEEeccccc
Confidence 4566677788776531 13577888888886 7774 4689999999999988765433
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=7.2e-09 Score=80.12 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=45.9
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
+..||++|.|++++.|++.+.+++. +.||++|+|++|.|+++++|+++++|.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~ 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVED 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEES
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEEC
Confidence 6889999999999999976655542 5899999999999999999999999964
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.87 E-value=1.4e-09 Score=93.55 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCC-------------------CEECCCCEEcceEEECCccc
Q 009971 383 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDTLLMGADYY 442 (521)
Q Consensus 383 ~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~-------------------~~Ig~~~~I~~s~i~~~~~~ 442 (521)
.++.+.+++.+.++.+.+++||++|.|++ +.|+++++..+ +.||++|+|+++++..+
T Consensus 13 ~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~--- 89 (135)
T d1yp2a1 13 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN--- 89 (135)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT---
T ss_pred EeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC---
Confidence 35678888888877788899999999997 88887665544 56777777666655444
Q ss_pred cccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCC-eEEcCCeEEECCCCEE
Q 009971 443 ETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDG-YFIKSGIVTIIKDALI 515 (521)
Q Consensus 443 e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~-~~I~~g~v~I~~~~~i 515 (521)
+.||+++.+. ++.+.+.+++++++.+.+ | ++|+.| ++|+++++|
T Consensus 90 ----------------~~IG~g~~i~~~~~~~~~~~~~~~~~i~~------------g~vvIg~~-~~I~~g~vI 135 (135)
T d1yp2a1 90 ----------------ARIGDNVKIINKDNVQEAARETDGYFIKS------------GIVTVIKD-ALIPSGIII 135 (135)
T ss_dssp ----------------CEECTTCEECCSSCCSCEEEGGGTEEEET------------TEEEECTT-CEECTTCBC
T ss_pred ----------------CEECCCcEECCCcccccceeeCCCEEECC------------CeEEECCC-CEECcCcCC
Confidence 4566666654 444555555555555543 3 345555 555555543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=3.3e-09 Score=97.38 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=15.4
Q ss_pred ECCCcEEce-eEE--e-eeEECCCCEECCCCEE
Q 009971 403 IGEGCVIKN-CKI--H-HSVVGLRSCISEGAII 431 (521)
Q Consensus 403 Ig~~~~I~~-~~I--~-~s~ig~~~~Ig~~~~I 431 (521)
||++|+|+. +.+ + +..||++|.|+.+|+|
T Consensus 57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I 89 (200)
T d1krra_ 57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTI 89 (200)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEECSCEEE
T ss_pred CCCCCEEcCCEEEecCCccEECCccEECceEEE
Confidence 555555554 333 1 4555666666665555
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=2.5e-08 Score=89.14 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe-----e
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----R 469 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~ 469 (521)
+..|+++|+|.+ |.|. ++.||++|.||++|.|.+. +..+. + +.++..+.+. .
T Consensus 10 ~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~---------------~---~~i~~~~~~~~~~~~~ 71 (173)
T d1v3wa_ 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGK---------------Y---SNVQDNVSIHTSHGYP 71 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECT---------------T---CEECTTCEEECBTTBC
T ss_pred CCEECcCcEECCCCEEeCceEECCCCEECCCcccccccccccccc---------------c---cccccccccccccCCC
Confidence 456777777776 5555 7899999999999999743 23332 2 2555555553 2
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.++.++.+....... ...+++.+.++.++.|..| ++||++|+|++||+|
T Consensus 72 ~~~~~~~~~~~~~~~~-~~~Ig~~~~ig~~~~i~~g-v~Ig~~~vIgagsvV 121 (173)
T d1v3wa_ 72 TEIGEYVTIGHNAMVH-GAKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp EEECSSCEECTTCEEE-SCEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred cccCcceeeeeeeeee-eeecCCcccccceeeecCC-EEEcceeEEcCCcEE
Confidence 4455555555544433 4566777777778888888 888888888888875
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.7e-09 Score=96.59 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=29.4
Q ss_pred cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcceEEEC
Q 009971 399 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
.|+.||++|+|+. |+|. ...||++|.|+++|.|.......
T Consensus 71 ~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~ 114 (182)
T d1ocxa_ 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPI 114 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCS
T ss_pred cceeECCccEECCCcEEecCCeEEECCCeEECcCceEeeccccc
Confidence 4567777777776 7665 34899999999999887665443
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.75 E-value=1.4e-08 Score=92.72 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=15.8
Q ss_pred EEecCCHHHHHHHhhhcccCCCCCccccccCCCccc
Q 009971 347 WEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIY 382 (521)
Q Consensus 347 w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~ 382 (521)
..-|+++..-.+....+.+...+-.+ +++|.+.|.
T Consensus 50 ~iaIG~~~~R~~~~~~~~~~~~~~~~-~I~p~a~I~ 84 (193)
T d3bswa1 50 FIAIGNNEIRKKIYQKISENGFKIVN-LIHKSALIS 84 (193)
T ss_dssp EECCSCHHHHHHHHHHHHHTTCCBCC-EECTTCEEC
T ss_pred EEEECCcHHHHHHHHHhhhhccccce-ecCCCcEEe
Confidence 45677776533433334333322122 444544443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=2.4e-08 Score=91.15 Aligned_cols=18 Identities=0% Similarity=-0.254 Sum_probs=8.4
Q ss_pred cCCCcccCCCCcCCCcee
Q 009971 376 DRSAPIYTQPRYLPPSKM 393 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i 393 (521)
+.+..|..++.+.|.+++
T Consensus 12 ~~~v~IG~~v~Ig~~vvI 29 (201)
T d2oi6a1 12 RGTLTHGRDVEIDTNVII 29 (201)
T ss_dssp EEEEEECSSCEECTTEEE
T ss_pred CceEEECCCCEECCCCEE
Confidence 333444444555555444
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.68 E-value=4.1e-08 Score=92.07 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=37.8
Q ss_pred ceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEE
Q 009971 400 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 478 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 478 (521)
.+.||+||.|.. +++||..+.||++|+|...+.++.. +|--...++.|++++ .||.+|.|- +++|++++.|
T Consensus 131 gA~ig~~~midt----~a~vgs~aqIG~~vhis~g~~igGv-lep~~~~p~iIed~~---~IGa~s~v~egv~Vg~~avi 202 (274)
T d3tdta_ 131 GAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDNC---FIGARSEVVEGVIVEEGSVI 202 (274)
T ss_dssp TCEECTTCEECT----TEEECTTCEECTTCEECTTCEECCS-BTTBCSSCCEECTTC---EECTTCEECTTCEECTTCEE
T ss_pred ccEEcCCcEEcc----cceecceeEECCCeEECCCcEEEec-cccCCCCCcEEecCc---EeccCceEecCEEecCceEe
Confidence 355666666663 4455555555555555444433321 222122333333333 455555442 4555555555
Q ss_pred CCCcEEeCC
Q 009971 479 GDNVKIVNS 487 (521)
Q Consensus 479 g~~~~i~~~ 487 (521)
|++++|...
T Consensus 203 ~~gv~i~~~ 211 (274)
T d3tdta_ 203 SMGVYLGQS 211 (274)
T ss_dssp CTTCEECTT
T ss_pred ccceEEecc
Confidence 555555543
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.63 E-value=4.1e-08 Score=92.03 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=62.9
Q ss_pred CCcCCCceeecccccceEECCCcEEceeEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCC
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 463 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~ 463 (521)
.|+-|++.++ ..++|++|+++.++.|. +++||++|.|..+++|+.|...|.. +.|+.
T Consensus 103 ~RvvPga~VR----~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis~ 160 (274)
T d3tdta_ 103 FRVVPPATVR----QGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 160 (274)
T ss_dssp CEECTTCEEB----TTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECT
T ss_pred EEeCCCceec----cCcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEECC
Confidence 4677777653 34778888877777777 7888888888888888877666642 35555
Q ss_pred CCEEe---------eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 464 NSHIK---------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 464 ~~~i~---------~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++.|. .++|+++|.||.++.+... ..++++++|+.|
T Consensus 161 g~~igGvlep~~~~p~iIed~~~IGa~s~v~eg------v~Vg~~avi~~g 205 (274)
T d3tdta_ 161 GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEG------VIVEEGSVISMG 205 (274)
T ss_dssp TCEECCSBTTBCSSCCEECTTCEECTTCEECTT------CEECTTCEECTT
T ss_pred CcEEEeccccCCCCCcEEecCcEeccCceEecC------EEecCceEeccc
Confidence 55554 3568888888888888764 444444555555
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.57 E-value=1.3e-07 Score=92.84 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=13.6
Q ss_pred ceEECCCcEEceeEEe-eeEECCCCEECCCCEE
Q 009971 400 DSVIGEGCVIKNCKIH-HSVVGLRSCISEGAII 431 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I 431 (521)
++.|+++|+|+++.|. ++.|+.+++|++++.+
T Consensus 87 ~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i 119 (320)
T d2f9ca1 87 NVRIGDNVWIDRADISDGARISDNVTIQSSSVR 119 (320)
T ss_dssp SCEECSSCEESSCEECSSEEECSSCEEESCEEC
T ss_pred CcEECCcEEECCcEEEcCcEEeeeeeecCccEE
Confidence 3444444444433333 3444444444444433
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.44 E-value=1.3e-08 Score=93.67 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=16.2
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.++||++|.||.++.|.. +.++|++++|++|
T Consensus 113 ~v~IGd~v~IG~~~~I~~------gv~IG~~~~Igag 143 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMP------GVKIGDGAIVAAN 143 (203)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CeEECCEEEECCceeEEe------EEEEcCCCEEecC
Confidence 345555555555555543 3445555555555
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=4.8e-08 Score=88.11 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=15.8
Q ss_pred ECCCcEEce-eEEe-eeEECC--CCEECCCCEEcceE
Q 009971 403 IGEGCVIKN-CKIH-HSVVGL--RSCISEGAIIEDTL 435 (521)
Q Consensus 403 Ig~~~~I~~-~~I~-~s~ig~--~~~Ig~~~~I~~s~ 435 (521)
+|.++.|++ +.|. +++|.+ .++||++|.|...+
T Consensus 69 ~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v 105 (182)
T d1ocxa_ 69 YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGV 105 (182)
T ss_dssp SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTC
T ss_pred eccceeECCccEECCCcEEecCCeEEECCCeEECcCc
Confidence 566666664 4444 444432 22445555554433
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.35 E-value=2.1e-07 Score=85.31 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=9.5
Q ss_pred eeEECCCCEECCCCEE
Q 009971 416 HSVVGLRSCISEGAII 431 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I 431 (521)
++.||++|.|+++|.|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (203)
T d1mr7a_ 60 KLKIGKFCSIGPGVTI 75 (203)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred ccEECCCeEECCCCcE
Confidence 3556666666666655
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.30 E-value=5.2e-07 Score=84.76 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEEC
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
+.||+|++|... .+.+||+++.||++|.|...+..+
T Consensus 144 ~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~~~ 179 (241)
T d1ssqa_ 144 AKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLG 179 (241)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEE
T ss_pred CEEccCcccCcc--ceEEEeccceecCCeeeccccccc
Confidence 345555555530 146777777777777776554443
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.26 E-value=2.6e-06 Score=83.32 Aligned_cols=46 Identities=7% Similarity=0.208 Sum_probs=23.5
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCC-ccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSD-SVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~-~~~~~~~~~~~~~I~~g 505 (521)
.|+.++.|. ++.|+.++.||.++.+.+.. .+.+..++++++.|+.+
T Consensus 231 ~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~ 278 (320)
T d2f9ca1 231 QVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGE 278 (320)
T ss_dssp EECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESS
T ss_pred ccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEccc
Confidence 344444444 45555566666666654432 34444455555555544
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.24 E-value=3.1e-07 Score=84.43 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=16.7
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.++|+++|.||.++.|.. ++++|++++|++|
T Consensus 108 ~v~Igd~v~IG~~s~I~~------gv~IG~~~vIgag 138 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMP------GVRVGHGAIIGSR 138 (208)
T ss_dssp CEEECTTCEECTTCEECT------TCEECTTCEECTT
T ss_pred CEEEcCCeEECccccccC------CeEeCCCCEEeCc
Confidence 455555555555555544 3455555555555
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.10 E-value=6e-05 Score=77.35 Aligned_cols=211 Identities=16% Similarity=0.207 Sum_probs=127.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHh----------CCC-ceEEEEecCC-hHHHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN----------SNI-SKIYVLTQFN-SASLNR 152 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~----------~gi-~~I~Iv~~~~-~~~i~~ 152 (521)
.++.+|+||||.||||+ ..-||.++|| .| +++++..++.+.. .+. --++|.+.++ .+.+.+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~-ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSR-KTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTC-CCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCC-CcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 47999999999999997 5789999998 34 4899998888654 222 2467777655 588999
Q ss_pred HHHHhhhccCCC----CcCCCcEEEeecccC-C----CCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCee-
Q 009971 153 HLSRAYASNMGG----YKNEGFVEVLAAQQS-P----ENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDHL- 216 (521)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~~v~vl~~~q~-~----~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~l- 216 (521)
||.+...+++.. .|.+..+..+..... . ....| +.|.++...... +.+.+...+++.+.+.|.+
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 999854444321 122222222211100 0 00011 457766444332 2333346789999999984
Q ss_pred cc-ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCC
Q 009971 217 YR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP 294 (521)
Q Consensus 217 ~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
.. .| ..++-.+..+++++.+-+.+....+ ..-|.+. .|..-+|+++.+-|...... .. .......
T Consensus 257 ~~~~D-p~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~~dg~~~vvEysel~~~~~~~-~~----------~~g~l~f 323 (501)
T d1jv1a_ 257 VKVAD-PRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCRVDGVYQVVEYSEISLATAQK-RS----------SDGRLLF 323 (501)
T ss_dssp CCTTC-HHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGSCHHHHHC-BC----------TTSSBSS
T ss_pred ccccC-HHHHHHHHhcccceeEEEEEcCCCC-cccceEEEECCeEEEEEeccCCHHHHhh-cc----------CCCcccc
Confidence 33 44 4578888889999888776643322 2344444 34333567777766443211 00 0001112
Q ss_pred ceeeEEEEEEeHHHHHHHHhh
Q 009971 295 YIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 295 ~l~~~GIyifs~~vl~~ll~~ 315 (521)
...++..++|+-++++++++.
T Consensus 324 ~~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 324 NAGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp CEEEEEEEEEEHHHHHHHHHT
T ss_pred cccceeheeeEHHHHHHHHHh
Confidence 358899999999999887753
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.07 E-value=2.9e-06 Score=77.78 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=11.5
Q ss_pred eeEECCCCEECCCCEE
Q 009971 416 HSVVGLRSCISEGAII 431 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I 431 (521)
+.+||++|.|+++|.|
T Consensus 54 ~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 54 KLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred eeEECCCCEECCCCEE
Confidence 4577777777777766
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.91 E-value=1.9e-05 Score=73.80 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.6
Q ss_pred EECCCCEECCCCEEc
Q 009971 418 VVGLRSCISEGAIIE 432 (521)
Q Consensus 418 ~ig~~~~Ig~~~~I~ 432 (521)
.||++|.|..++.+.
T Consensus 165 ~ig~~~~i~~~v~~~ 179 (241)
T d1ssqa_ 165 VIENDVSILQGVTLG 179 (241)
T ss_dssp EECTTCEECTTCEEE
T ss_pred eecCCeeeccccccc
Confidence 344444444444444
|
| >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MM2497-like domain: Hypothetical protein MM2497 species: Methanosarcina mazei [TaxId: 2209]
Probab=92.97 E-value=0.26 Score=43.51 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=63.2
Q ss_pred EEEEEEe-CC-CCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILG-GG-AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILA-aG-~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|.|||+- .+ .-|||.|.- -++.-..+. + .|+.++++.+.+.++..+++++...... . ...
T Consensus 1 m~~iiPiK~~~aKTRL~~~L--~~~~r~~L~-~-~ml~~tl~~l~~~~~~~v~~vs~~~~~~------~--------~~~ 62 (208)
T d2i5ea1 1 MRAVIPYKKAGAKSRLSPVL--SLQEREEFV-E-LMLNQVISSLKGAGIEQVDILSPSVYGL------E--------EMT 62 (208)
T ss_dssp CEEEEECCCTTTTGGGTTTS--CHHHHHHHH-H-HHHHHHHHHHHHTTCSEEEEEESSCTTC------S--------SCC
T ss_pred CeEEEecCCCCCccCcCccc--CHHHHHHHH-H-HHHHHHHHHHHhCCCcEEEEEcCcHHHH------H--------Hhh
Confidence 6788885 23 348888641 223333443 3 6999999999999999999888643211 0 011
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHH
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQ 226 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~ 226 (521)
.. .+.. + + .|-.+++.+++. . ..+.++++.+|+ +...++..+++
T Consensus 63 ~~--~~~~--~---~----~~L~~al~~a~~---~-~~~~vliig~DlP~L~~~~l~~a~~ 108 (208)
T d2i5ea1 63 EA--RVLL--D---E----KDLNEALNRYLK---E-AEEPVLIVMADLPLLSPEHIKEISS 108 (208)
T ss_dssp SS--EEEE--C---C----SCHHHHHHHHHH---H-CCSCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC--Cccc--C---C----CCHHHHHHHHHh---c-CCCCEEEecCCcCcCCHHHHHHHHh
Confidence 11 1211 1 1 355667776653 2 357899999999 55566776543
|