Citrus Sinensis ID: 009983
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| 297833026 | 519 | hypothetical protein ARALYDRAFT_477601 [ | 0.946 | 0.949 | 0.575 | 1e-162 | |
| 145338065 | 521 | uncharacterized protein [Arabidopsis tha | 0.940 | 0.940 | 0.567 | 1e-160 | |
| 255566034 | 510 | hypothetical protein RCOM_1516730 [Ricin | 0.865 | 0.884 | 0.602 | 1e-156 | |
| 449432366 | 536 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.960 | 0.529 | 1e-148 | |
| 449487556 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.890 | 0.958 | 0.553 | 1e-141 | |
| 6017097 | 436 | hypothetical protein [Arabidopsis thalia | 0.731 | 0.873 | 0.509 | 1e-108 | |
| 242093892 | 525 | hypothetical protein SORBIDRAFT_10g02704 | 0.909 | 0.902 | 0.420 | 1e-104 | |
| 356503123 | 607 | PREDICTED: uncharacterized protein LOC10 | 0.435 | 0.373 | 0.771 | 1e-102 | |
| 413933878 | 528 | hypothetical protein ZEAMMB73_169099 [Ze | 0.925 | 0.912 | 0.423 | 1e-102 | |
| 115454861 | 539 | Os03g0707300 [Oryza sativa Japonica Grou | 0.919 | 0.888 | 0.428 | 1e-101 |
| >gi|297833026|ref|XP_002884395.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] gi|297330235|gb|EFH60654.1| hypothetical protein ARALYDRAFT_477601 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 302/525 (57%), Positives = 378/525 (72%), Gaps = 32/525 (6%)
Query: 19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
++S+ + RH+IE +++ ED N QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct: 5 RSSESIKRHEIEKDTIASRKLEDSNAKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64
Query: 78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEEN KLAHDLKV ED
Sbjct: 65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENSKLAHDLKVTED 124
Query: 138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + + DRIR+L+
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184
Query: 198 AGAGSIDTVVLDRHGVPMHTPNAA-----DRPE----------PTDNMPRTIHDDSHSEM 242
G D + D H P ++ + A DR P +N+ R + + +
Sbjct: 185 PGT---DFISKDNHD-PRNSKSQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNVMQDT 240
Query: 243 KNLLHNSQMQQLFNNDSSQGFSFGSNRENLG----NVPNALDLRVARGPEEMNAWFPSTH 298
+ L N+Q+ SQG REN G +V +R E ++ F + +
Sbjct: 241 EGLRFNNQI-----GGGSQGIFQQPKRENFGYPLSSVAGKEMIREREEKAESSSMFDAYN 295
Query: 299 N--EIASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYI 356
E AS + E GPGI+GFQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YI
Sbjct: 296 GNEEFASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYI 355
Query: 357 EGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYI 416
EGAT+PEYVVTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD MQ+EID YI
Sbjct: 356 EGATHPEYVVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQAEIDTYI 415
Query: 417 SRGHATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLST 476
SRG A+F+V +LMDSSE+WE AT+IL+RS Y+IK ++TE +I E++ KE+ IKVPCG ST
Sbjct: 416 SRGQASFNVQLLMDSSESWETATVILKRSSYQIKTNTTE-VISEKYSKELQIKVPCGFST 474
Query: 477 QFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA 521
QFVL DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR
Sbjct: 475 QFVLISYDGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGRV 519
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145338065|ref|NP_187006.2| uncharacterized protein [Arabidopsis thaliana] gi|332640436|gb|AEE73957.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255566034|ref|XP_002524005.1| hypothetical protein RCOM_1516730 [Ricinus communis] gi|223536732|gb|EEF38373.1| hypothetical protein RCOM_1516730 [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449432366|ref|XP_004133970.1| PREDICTED: uncharacterized protein LOC101207305 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449487556|ref|XP_004157685.1| PREDICTED: uncharacterized protein LOC101226515 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|6017097|gb|AAF01580.1|AC009895_1 hypothetical protein [Arabidopsis thaliana] gi|6091766|gb|AAF03476.1|AC009327_15 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|242093892|ref|XP_002437436.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] gi|241915659|gb|EER88803.1| hypothetical protein SORBIDRAFT_10g027040 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|356503123|ref|XP_003520361.1| PREDICTED: uncharacterized protein LOC100813936 [Glycine max] | Back alignment and taxonomy information |
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| >gi|413933878|gb|AFW68429.1| hypothetical protein ZEAMMB73_169099 [Zea mays] | Back alignment and taxonomy information |
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| >gi|115454861|ref|NP_001051031.1| Os03g0707300 [Oryza sativa Japonica Group] gi|108710674|gb|ABF98469.1| expressed protein [Oryza sativa Japonica Group] gi|113549502|dbj|BAF12945.1| Os03g0707300 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 521 | ||||||
| TAIR|locus:2096434 | 521 | AT3G03560 [Arabidopsis thalian | 0.961 | 0.961 | 0.553 | 8e-140 | |
| TAIR|locus:2154468 | 729 | AT5G23490 "AT5G23490" [Arabido | 0.389 | 0.278 | 0.428 | 5.2e-64 |
| TAIR|locus:2096434 AT3G03560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 286/517 (55%), Positives = 369/517 (71%)
Query: 19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
++S+ + RH+IE +++ ED N QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct: 5 RSSESIKRHEIEKDTIASRKLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64
Query: 78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEENLKLAHDLKV ED
Sbjct: 65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTED 124
Query: 138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + + DRIR+L+
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184
Query: 198 AGAGSIDTVVLD-RHGVPMHTPNAADRP---EPTDNMPRTIHDDSHSEMKNLLHNSQMQQ 253
G I D R+ + + DR + + + + + + + N++ +++ +
Sbjct: 185 PGTDFISKDNHDPRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTESLR 244
Query: 254 LFNND---SSQGFSFGSNRENLGNVPNAL---DLRVARGPEEMNAWFPSTHNXXXXXXXX 307
FNN SQG REN G +++ ++ R + N+ +N
Sbjct: 245 -FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQEREEKAENSSMFDAYNGNEEFASH 303
Query: 308 XXXXX---XXFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEY 364
FQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+PEY
Sbjct: 304 VYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEY 363
Query: 365 VVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFS 424
+VTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD MQ+EID YISRG A+F+
Sbjct: 364 IVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQASFN 423
Query: 425 VLMLMDSSENWEQATLILRRSIYRIKIDSTEAI-IEERFPKEVSIKVPCGLSTQFVLTFS 483
V +LMDSSE+WE AT++L+RS Y+IK ++TEA+ I E++ KE+ I+VP G STQFVL
Sbjct: 424 VQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLISY 483
Query: 484 DGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGR 520
DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR
Sbjct: 484 DGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGR 520
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| TAIR|locus:2154468 AT5G23490 "AT5G23490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 521 | |||
| 4dix_A | 230 | Plectin-related protein; PH domain, IG domain, mal | 3e-40 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 |
| >4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-40
Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 23/216 (10%)
Query: 303 SSISEGGPGIEGFQIIGEATPGEKL--LGCGYPVRGTTLCMFQWVR-HLQDGTRHYIEGA 359
SS ++I G G L C + C QW R + I GA
Sbjct: 3 SSSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGA 62
Query: 360 TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRG 419
T Y DV +++ + I G + KI G+ S ++A + +
Sbjct: 63 TKSVYAPEPFDVGRVLHADIIY------DGHSLSLSTVG--KIDPAAGLGSYVEALVRKH 114
Query: 420 HATFSVLML-MDSSENWEQATLILRRSIYRIKIDSTEA-IIEERFPKEVSIKVPCGL--- 474
F+V++ M ++ ++ + RIK+ + I +E + + + CG+
Sbjct: 115 DVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQL---CGVRGG 171
Query: 475 ---STQFVL-TFSDGSSYPFSTYNVRMRDTLVLTMR 506
+ Q + G S+ + + R R+ ++ R
Sbjct: 172 GNAAAQALYWQAKKGVSFVIAFESERERNAAIMLAR 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 521 | |||
| 4dix_A | 230 | Plectin-related protein; PH domain, IG domain, mal | 99.93 |
| >4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=212.00 Aligned_cols=187 Identities=20% Similarity=0.296 Sum_probs=159.3
Q ss_pred ceeecccCCCcceeeecc--ccCCceeeeeEEEEEc-cCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccce
Q 009983 315 FQIIGEATPGEKLLGCGY--PVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 391 (521)
Q Consensus 315 lqI~Gda~pG~~L~acGy--sinGTtlC~FqWvRhl-eDGs~~~IegA~~p~Y~vTADDVd~~iAvec~PmDd~grkGEl 391 (521)
+.+-|.-..|.-|+...- ..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+| .|+.
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776654332 2334799999999999 889999999999999999999999999999998 3999
Q ss_pred eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceeEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 009983 392 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 469 (521)
Q Consensus 392 V~~~aNd~~kI~cDpeMq~~I~~~l~~G~Asf~V~l~~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~Ekfs~~~~Ik 469 (521)
|.+|+| +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999965567888 99999999999999985 4499999999986654
Q ss_pred ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 009983 470 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ 509 (521)
Q Consensus 470 Ip~g--~--~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~ 509 (521)
=-.| + +.-.+-.-.-|..+.|-++..|.|..+.+.-|-|-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA 210 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA 210 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence 3333 2 34455566889999999999999999999999984
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00