Citrus Sinensis ID: 009984


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWARARTRAAKVGKGLSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSFSFKATSSESMPKEAEVLPTMAKSTIADTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQVNLSPRVTPGGSRISAPIPSPRPSPKIRVSPRLAYMGLPSPRVAVANAS
cccccccccccHHHHHHHccccccccccEEEEcccccccccccccHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHHHHcccccccccEEEEEEccEEEEEEcccEEEcccccEEEEEEEcccEEEEEcccccccccccccccccccccEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEcccccccccccccHHHHHHHHHHHccHHHHHHEEEEEEccEEEEEEccEEEEcccccEEEEEEEcccEEEEEEcccccEEcccHccccHEEEcEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHccccccccccHHHHccccccEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEccHHHHcccccccccccccc
MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRSasfgtksfkkedlqtlhkfkgsdiMIMERSLSFknwdsnvpekeksnsisfkdkmnkptillpepvvfhsprpvseLDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKrssvsffniekpETALSRWARARTRAAKvgkglskdENAQKLALQHWLEAidprhryghnlhfyydiwsdskstqpffywldvgdgkevnlekcprnvLQRQCIkylgpkereEFEVVVESGKLVYrqtgmfvntnedsKWIFVLSTSRAlyvgqkkkgvfqhssflsggaiTAAGRLVAHDGileaiwpysghylpteeNFKEFVSFLEEHsvdltnvkrcaidedsfsfkatssesmpkeaevlpTMAKSTIADTVDLIRACttadrqqvsistsaankeapvydlskrlsckwtsgvgprigcvrdyptnlqfQALEQvnlsprvtpggsrisapipsprpspkirvsprlaymglpsprvavanas
MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRsasfgtksfkkedlqtlhkfkgsdimIMERSLSfknwdsnvpekeksnsisfkdkmnkpTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKrssvsffniekpetalsrWARARTRAAkvgkglskdenAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVnlekcprnvlQRQCIKylgpkereeFEVVVESGKLVYRQTgmfvntnedskWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSfsfkatssesmpkEAEVLPTMAKSTIADTVDLIRACTTadrqqvsistsaankeapvydlskrlsckwtsgvgprIGCVRDYPTNLQFQALEQVNLSPRVTPGgsrisapipsprpspkirvsprlaymglpsprvavanas
MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWARARTRAAKVGKGLSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSFSFKATSSESMPKEAEVLPTMAKSTIADTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQVNLSPRVTPGGsrisapipsprpspkirvsprLAYMGLPSPRVAVANAS
****LSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIMIMERSLSF**************************ILLPEPVVFH******ELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWARART***************QKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDE**************************TIADTVDLIRACTTADRQ************APVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQV************************************************
MGLSLSLLVSTWSEILQ****************************************************************************************************QKVYKSYRTRRNLADCAVVVEELWWKALDFA***************************************************EAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRC***************************************************************************SGVGPRIGCVRDYPTNLQFQAL***************************************************
MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIMIMERSLSFKNWDS*********SISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWAR***********LSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSFSF***************PTMAKSTIADTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQVNLSPRVTPGGSRISAPIPSPRPSPKIRVSPRLAYMGLPSPRVAVANAS
***SLSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGT*****************DIMIMERSLSFKNWD********************************S***VSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWARARTRAAKVGKGLSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAI**********************************************************APVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQVNLSP**************SPRPSPKIRVSPRLAYMGLPS*********
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SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLSLSLLVSTWSEILQNYFGFTNRVEKVIRRSASFGTKSFKKEDLQTLHKFKGSDIMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNIEKPETALSRWARARTRAAKVGKGLSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSFSFKATSSESMPKEAEVLPTMAKSTIADTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKRLSCKWTSGVGPRIGCVRDYPTNLQFQALEQVNLSPRVTPGGSRISAPIPSPRPSPKIRVSPRLAYMGLPSPRVAVANAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
224142786531 predicted protein [Populus trichocarpa] 0.971 0.952 0.692 0.0
225429504540 PREDICTED: uncharacterized protein LOC10 0.986 0.951 0.688 0.0
224088812513 predicted protein [Populus trichocarpa] 0.942 0.957 0.693 0.0
255550071519 calmodulin binding protein, putative [Ri 0.971 0.974 0.664 0.0
147866673 992 hypothetical protein VITISV_003845 [Viti 0.952 0.5 0.683 0.0
225444875535 PREDICTED: uncharacterized protein LOC10 0.959 0.934 0.661 0.0
147859065544 hypothetical protein VITISV_024541 [Viti 0.919 0.880 0.670 0.0
356561925530 PREDICTED: uncharacterized protein LOC10 0.961 0.945 0.616 0.0
225442208554 PREDICTED: uncharacterized protein LOC10 0.986 0.927 0.621 0.0
147846155 958 hypothetical protein VITISV_000215 [Viti 0.978 0.532 0.613 0.0
>gi|224142786|ref|XP_002324731.1| predicted protein [Populus trichocarpa] gi|222866165|gb|EEF03296.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/540 (69%), Positives = 428/540 (79%), Gaps = 34/540 (6%)

Query: 1   MGLSLSLLVSTWSEIL-QNYFGFTNRVEKVIRRSASFG---------TKSFKKEDLQTLH 50
           MGLS SLL+S W+ IL   +FG  + VEK++ RS SF          T SFKK+  +T+ 
Sbjct: 1   MGLSFSLLLSAWTAILGHKFFGSKDTVEKIVVRSLSFARKDGEMGSRTNSFKKDVSETIG 60

Query: 51  KFKGSDIMIMERSLSFKNWDSNV----PEKEKSNSISFKDK------MNKPTILLPEP-V 99
           K +GSD +  ERSLSF +WDS+     P     +S S K K      + KPTILLPEP V
Sbjct: 61  KCEGSDKLSFERSLSFNHWDSDKIKAKPSDSSRSSNSLKIKGHETVHITKPTILLPEPPV 120

Query: 100 VFHSPRPVSELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFN 159
           +F SPRP+SELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFN
Sbjct: 121 IFFSPRPISELDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFN 180

Query: 160 IEKPETALSRWARARTRAAKVGKGLSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIW 219
           IEK ETA+S+WARA TR AK+GKGLSKDE AQKLALQHWLEAIDPRHRYGHNLHFYYD+W
Sbjct: 181 IEKHETAISKWARASTRVAKLGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDVW 240

Query: 220 SDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQ 279
            DS+STQPFFYWLD+GDGKEVNLEKCPR+ LQRQCI+YLGPKERE FEV+VESGKLVYRQ
Sbjct: 241 FDSRSTQPFFYWLDIGDGKEVNLEKCPRSKLQRQCIQYLGPKEREAFEVIVESGKLVYRQ 300

Query: 280 TGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAI 339
           TG+ VNT +D+KWIFVLSTSR+LYVGQKKKGVFQHSSFL+GGA TAAGRLV+ DG+L+AI
Sbjct: 301 TGLLVNTTDDTKWIFVLSTSRSLYVGQKKKGVFQHSSFLAGGATTAAGRLVSEDGVLQAI 360

Query: 340 WPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDEDSFSFKATSSESMPKEAEVLPT 399
           WPYSGHYLPTE+NFKEF+SFLEEH+VDLTNVKRC+ID+D  SFK T      +E + + T
Sbjct: 361 WPYSGHYLPTEDNFKEFISFLEEHNVDLTNVKRCSIDDDDSSFKVTDEGCKQEEMKEITT 420

Query: 400 MAKSTIADTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKRLSCKWTSGVGPRIGCVR 459
           +  +      D + A             +AA  +AP +DLSKRLSCKW SG GPRIGCVR
Sbjct: 421 ITSTNTTANEDNMEA-------------NAAMLQAPAFDLSKRLSCKWASGYGPRIGCVR 467

Query: 460 DYPTNLQFQALEQVNLSPRVTPGGSRISAPIPSPRPSPKIRVSPRLAYMGLPSPRVAVAN 519
           DYP +LQ +ALEQVNLSPR+ PG +    PIPSPRPSPK+RVSPRLAYMGLPSPRVAV+ 
Sbjct: 468 DYPADLQSRALEQVNLSPRINPGLAGSCVPIPSPRPSPKVRVSPRLAYMGLPSPRVAVST 527




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429504|ref|XP_002278508.1| PREDICTED: uncharacterized protein LOC100250890 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088812|ref|XP_002308550.1| predicted protein [Populus trichocarpa] gi|222854526|gb|EEE92073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550071|ref|XP_002516086.1| calmodulin binding protein, putative [Ricinus communis] gi|223544572|gb|EEF46088.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147866673|emb|CAN83680.1| hypothetical protein VITISV_003845 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444875|ref|XP_002279373.1| PREDICTED: uncharacterized protein LOC100256072 [Vitis vinifera] gi|297738645|emb|CBI27890.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859065|emb|CAN80416.1| hypothetical protein VITISV_024541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356561925|ref|XP_003549227.1| PREDICTED: uncharacterized protein LOC100776993 [Glycine max] Back     alignment and taxonomy information
>gi|225442208|ref|XP_002274686.1| PREDICTED: uncharacterized protein LOC100263563 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846155|emb|CAN81630.1| hypothetical protein VITISV_000215 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2123817526 EDA39 "AT4G33050" [Arabidopsis 0.368 0.365 0.751 7.8e-156
TAIR|locus:2057765532 AT2G26190 "AT2G26190" [Arabido 0.915 0.896 0.595 1.4e-149
TAIR|locus:2164655495 AT5G57010 "AT5G57010" [Arabido 0.650 0.684 0.642 3.2e-136
TAIR|locus:2076421575 AT3G58480 "AT3G58480" [Arabido 0.566 0.513 0.641 3.2e-119
TAIR|locus:2086819605 AT3G13600 "AT3G13600" [Arabido 0.756 0.651 0.559 2.3e-110
TAIR|locus:2085161456 AT3G52870 "AT3G52870" [Arabido 0.518 0.592 0.575 1.8e-99
TAIR|locus:2123817 EDA39 "AT4G33050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 802 (287.4 bits), Expect = 7.8e-156, Sum P(3) = 7.8e-156
 Identities = 145/193 (75%), Positives = 172/193 (89%)

Query:   197 HWLEA-IDPRHRYGHNLHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCI 255
             H L+  IDPRHRYGHNLHFYYD+WS SKSTQPFFYWLD+GDGK+VNLEK PR+VLQ+QCI
Sbjct:   230 HLLKLQIDPRHRYGHNLHFYYDVWSASKSTQPFFYWLDIGDGKDVNLEKHPRSVLQKQCI 289

Query:   256 KYLGPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHS 315
             +YLGP ERE +EV+VE G+L+Y+Q    +N+ E++K IFVLST+R LYVG KKKG+FQHS
Sbjct:   290 RYLGPMEREAYEVIVEDGRLMYKQGMTLINSTEEAKSIFVLSTTRNLYVGIKKKGLFQHS 349

Query:   316 SFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAI 375
             SFLSGGA TAAGRLVA DGILEAIWPYSGHYLPTE+NFKEF+SFLEEH+VDLTNVKRC++
Sbjct:   350 SFLSGGATTAAGRLVARDGILEAIWPYSGHYLPTEDNFKEFISFLEEHNVDLTNVKRCSV 409

Query:   376 DEDSFSFKATSSE 388
             +E+  SFK+T+ E
Sbjct:   410 NEEYSSFKSTADE 422


GO:0005516 "calmodulin binding" evidence=ISS;IPI
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0010200 "response to chitin" evidence=IEP;RCA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0010119 "regulation of stomatal movement" evidence=IMP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009581 "detection of external stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009625 "response to insect" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009646 "response to absence of light" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2057765 AT2G26190 "AT2G26190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164655 AT5G57010 "AT5G57010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076421 AT3G58480 "AT3G58480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086819 AT3G13600 "AT3G13600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085161 AT3G52870 "AT3G52870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 94.86
smart0001526 IQ Short calmodulin-binding motif containing conse 93.76
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
Probab=94.86  E-value=0.018  Score=37.16  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhhhhhhhhcc
Q 009984          111 DAAATKLQKVYKSYRTRRNL  130 (521)
Q Consensus       111 ~~AA~~iQk~Yr~yRtRR~L  130 (521)
                      ..||++||+.||+|..|+++
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            36999999999999999875



The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 3e-14
 Identities = 65/516 (12%), Positives = 144/516 (27%), Gaps = 155/516 (30%)

Query: 22  FTNRVEKV--IRRSASFGTKSFKKEDLQTLHKFKGS-----------DIMIMERS----- 63
             +R++    +R++        +      +    GS              +  +      
Sbjct: 130 NVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 64  -LSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYK 122
            L+ KN +S     E    + ++  ++       +    HS      + +   +L+++ K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSD----HSSNIKLRIHSIQAELRRLLK 239

Query: 123 SYRTRRNLADCAVVVEELW----WKALDFAA--L---KRSSVSFFNIEKPETALSRWARA 173
           S    +   +C +V+  +     W A + +   L   +   V+ F        LS     
Sbjct: 240 S----KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--------LSAATTT 287

Query: 174 RTRAAKVGKGLSKDENAQKLALQHWL---------EA--IDPRH--RYGHNLHFYYDIWS 220
                     L+ DE    L    +L         E    +PR       ++      W 
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 221 DSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQT 280
                     W      K VN +K    +++   +  L P E  +           + + 
Sbjct: 346 ---------NW------KHVNCDKL-TTIIES-SLNVLEPAEYRKM----------FDRL 378

Query: 281 GMFVNTNEDSK---------W----------IFVLSTSRALYVGQKKKGVFQ-HSSFLSG 320
            +F      +          W          +       +L   Q K+      S +L  
Sbjct: 379 SVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 321 GAITAAGRLVAHDGILEA--------------------IWPYSGHYLPT---EENFKEF- 356
             +        H  I++                      + + GH+L      E    F 
Sbjct: 436 -KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 357 -----VSFLE---EHSVDLTNVKRCAID--EDSFSFKATSSESMPKEAEVLPTMAKSTIA 406
                  FLE    H     N     ++  +    +K    ++ PK   ++  +      
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 407 DTVDLIRACTTADRQQVSISTSAANKEAPVYDLSKR 442
              +LI      D  ++++      ++  +++ + +
Sbjct: 555 IEENLIC-SKYTDLLRIALM----AEDEAIFEEAHK 585


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.24
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.16
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 92.09
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 89.55
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
Probab=95.24  E-value=0.01  Score=40.68  Aligned_cols=22  Identities=18%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHhhhhhhhhhcc
Q 009984          109 ELDAAATKLQKVYKSYRTRRNL  130 (521)
Q Consensus       109 ~~~~AA~~iQk~Yr~yRtRR~L  130 (521)
                      +.+.||+.||+.||+|..||.+
T Consensus         4 ~Ee~aA~vIQrA~R~yl~~~~~   25 (27)
T 2kxw_B            4 QEEVSAIVIQRAYRRYLLKQKV   25 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5678999999999999999865



>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d2hu7a1313 Acylamino-acid-releasing enzyme, N-terminal donain 82.0
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]
Probab=82.00  E-value=1.2  Score=42.14  Aligned_cols=96  Identities=20%  Similarity=0.224  Sum_probs=73.8

Q ss_pred             hhhhhhccCcccccceEEEEecCeEEE-----------eeCCcEEecc----CCCeEEEEEcC-CCcEEEeeccCCceec
Q 009984          251 QRQCIKYLGPKEREEFEVVVESGKLVY-----------RQTGMFVNTN----EDSKWIFVLST-SRALYVGQKKKGVFQH  314 (521)
Q Consensus       251 ~~q~IkYLspeERe~YeV~IedGrL~y-----------~~sG~~vdTt----~~~kWIFVmdt-sg~LYVG~KkkG~FQH  314 (521)
                      ..+.|-+.+..|-+.+++.||+|+|.-           +-+|..+--.    ++..-.|+.|. +|+|-|-..+-|.|..
T Consensus       112 ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~  191 (313)
T d2hu7a1         112 TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSS  191 (313)
T ss_dssp             CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEE
T ss_pred             cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccc
Confidence            356788899999999999999999952           2223322211    13344899999 8999999889999999


Q ss_pred             ccCCCCCcceeeeeEEEecceeEEecCCCCCCC
Q 009984          315 SSFLSGGAITAAGRLVAHDGILEAIWPYSGHYL  347 (521)
Q Consensus       315 SSFLaGg~V~AAG~I~VknG~Lk~Isp~SGHYR  347 (521)
                      .+.+-|..| +||.=.+..-....+.+.||-|-
T Consensus       192 ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ye  223 (313)
T d2hu7a1         192 ASISPGMKV-TAGLETAREARLVTVDPRDGSVE  223 (313)
T ss_dssp             EEECTTSCE-EEEEEESSCEEEEEECTTTCCEE
T ss_pred             eeEccCcee-eeccCCCCceEEEEEecccCcee
Confidence            999999999 77777776666668899999883