Citrus Sinensis ID: 009998

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
ccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccccccccccHccccccccccccccEEEccccccccccccccccccccccccccHHccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mvaemaqspvESVAEVHNSLAqengkldkgpvkdesiifgshggvgelvngkesnvsnanlpkdvgeewpeprvihnfyfirhrqyddpkirakidlTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKlrttnnarsggicsseEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptQKVQKEAAKKetedtadfeipvvekpasekkvDEAKLREMKKEEDRAKAREGMERKRKKEEAKVAKAALRAEKQRKEIIYGTYFFTITVLLAINLELI
mvaemaqspveSVAEVHNSLAqengkldkgpvkDESIIFGSHGGVGELVNGKESNVSNANlpkdvgeewpepRVIHNFyfirhrqyddpkirakidltdreIQRRNQARMQLMDELRAKRVIRGDLAAqlrslktegrqyksvmddkrkeMEPLHQalgklrttnnarsggicsseeELDDLIRSLQYRIQHeiiplseekqILREIKQLEGTREKVMANAAMRAKIqesmgkkediqDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKElrkqrdegNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLwnnnkafrDDYEKRLLQSLDmrqlsrdgrirnpdekplvvaetsvpsepeivakpnvkqskgdsksasqkdtlptqkvqkeaakketedtadfeipvvekpasekkvdeaklremkkeedrakaregmerkrkkeeaKVAKAAlraekqrkeiiygtyFFTITVLLAINLELI
MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASEKKVDEAKLREMKKEEDrakaregmerkrkkeeakvakaalraekQRKEIIYGTYFFTITVLLAINLELI
************************************IIFGSHGGV**********************EWPEPRVIHNFYFIRHRQYDDPKIRAKIDLT**********************VI********************************************************LDDLIRSLQYRIQHEIIPLSEEKQILR***************************************************AVWAKISHLEGKVKAL*********************************EGNAYFFQYRALLNEAKAMSVK************EVEKYMTLWNNNKAFRDDYE******************************************************************************************************************************************KEIIYGTYFFTITVLLAINLE**
*************************************************************************VIHNFYFIRHRQYDD*****************************************************************************************************************************************************************************************************************************YFF*********************************************************************************************************************************************************************************************YGTYFFTITVLLAINLELI
**************EVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQ********IQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKP***********************************ADFEIPVVEKPASEKKVDEAKLR******************************LRAEKQRKEIIYGTYFFTITVLLAINLELI
*****************************************************************GEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT******GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAE*************************************************************************K**EDRAKAREGMERK*********K*ALRAEKQRKEIIYGTYFFTITVLLAINLELI
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MVAEMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSExxxxxxxxxxxxxxxxxxxxxAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIIYGTYFFTITVLLAINLELI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query520 2.2.26 [Sep-21-2011]
O23144612 Proton pump-interactor 1 yes no 0.892 0.758 0.520 1e-129
B3H4K7589 Proton pump-interactor 2 no no 0.853 0.753 0.351 2e-54
P0DKC0576 Proton pump-interactor 3B no no 0.775 0.699 0.350 3e-49
P0DKC1576 Proton pump-interactor 3A no no 0.775 0.699 0.350 3e-49
Q8VZN4439 Proton pump-interactor 4 no no 0.428 0.507 0.369 6e-32
>sp|O23144|PPI1_ARATH Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2 Back     alignment and function desciption
 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/488 (52%), Positives = 346/488 (70%), Gaps = 24/488 (4%)

Query: 4   EMAQSPVESVAEVHNSLAQENGKLDKGPVKDESIIFGSHGGVGELVNGKESN---VSNAN 60
           E+A +P E   E       +NGKLD+G   D  I FGS   VGEL    E N   V N++
Sbjct: 12  EVAPAPFEGKPE-------KNGKLDQGKGDDAPINFGS---VGELPKNAEENNNKVVNSD 61

Query: 61  LPKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120
            PK+  EEWP  + IH+FY +++R Y DPKI+AK+DL D+E+++ N+AR  ++D+LRAKR
Sbjct: 62  APKNAAEEWPVAKQIHSFYLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKR 121

Query: 121 VIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEE 178
             R +L   L  LK+E + + ++ D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEE
Sbjct: 122 AERSELFDLLDPLKSERKGFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEE 181

Query: 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 238
           L+ +I S QYRIQHE IPL+EEKQIL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ
Sbjct: 182 LNSMIYSYQYRIQHESIPLTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQ 241

Query: 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298
            QVKLMG+ LDGVKKE QA+ A+I+ L  K+KA  +EI  L+ E+  V+EKRDKA++NI 
Sbjct: 242 GQVKLMGAGLDGVKKERQAISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIH 301

Query: 299 ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 358
           +LR+QRDE N+ ++Q R +LN+A+ ++ +K++  L+ L+N+EVEK+++LW + K FR+DY
Sbjct: 302 DLRRQRDETNSEYYQNRTVLNKARDLAAQKNISELEALANAEVEKFISLWCSKKNFREDY 361

Query: 359 EKRLLQSLDMRQLSRDGRIRNPDEKPLVVAET----SVPSEPEIVAKPNVK-QSKGDSKS 413
           EKR+LQSLD RQLSRDGR+RNPDEKPL+  E     + PSE E+V K   K Q K +  S
Sbjct: 362 EKRILQSLDSRQLSRDGRMRNPDEKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVS 421

Query: 414 ASQKDTLPTQKVQ--KEAAK-KETEDTADFEIPVVEKPASEKK-VDEAKLREMKKEEDRA 469
           A + D    Q  +  K+A K K   D  D E+  + KP  E+K VD A  +EM+K+E+ A
Sbjct: 422 APKPDATVAQNTEKAKDAVKVKNVADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEEIA 481

Query: 470 KAREGMER 477
           KA++ MER
Sbjct: 482 KAKQAMER 489
Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site.
Arabidopsis thaliana (taxid: 3702)
>sp|B3H4K7|PPI2_ARATH Proton pump-interactor 2 OS=Arabidopsis thaliana GN=PPI2 PE=2 SV=1 Back     alignment and function description
>sp|P0DKC0|PPI3B_ARATH Proton pump-interactor 3B OS=Arabidopsis thaliana GN=PPI3B PE=3 SV=1 Back     alignment and function description
>sp|P0DKC1|PPI3A_ARATH Proton pump-interactor 3A OS=Arabidopsis thaliana GN=PPI3A PE=3 SV=1 Back     alignment and function description
>sp|Q8VZN4|PPI4_ARATH Proton pump-interactor 4 OS=Arabidopsis thaliana GN=PPI4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
147857052536 hypothetical protein VITISV_007014 [Viti 0.963 0.934 0.585 1e-163
359493838 627 PREDICTED: uncharacterized protein LOC10 0.938 0.778 0.591 1e-160
224114940619 predicted protein [Populus trichocarpa] 0.913 0.767 0.608 1e-159
224128300616 predicted protein [Populus trichocarpa] 0.913 0.771 0.597 1e-157
255586536616 DNA double-strand break repair rad50 ATP 0.898 0.758 0.594 1e-151
449447207 639 PREDICTED: proton pump-interactor 1-like 0.948 0.771 0.557 1e-151
302142999478 unnamed protein product [Vitis vinifera] 0.803 0.874 0.624 1e-146
356517130 665 PREDICTED: uncharacterized protein LOC10 0.896 0.700 0.557 1e-145
356549720616 PREDICTED: uncharacterized protein LOC10 0.901 0.761 0.552 1e-145
357452965609 hypothetical protein MTR_2g085330 [Medic 0.903 0.771 0.546 1e-138
>gi|147857052|emb|CAN81802.1| hypothetical protein VITISV_007014 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/526 (58%), Positives = 392/526 (74%), Gaps = 25/526 (4%)

Query: 4   EMAQSPVESVAEVHNSLAQ--ENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANL 61
           E A +PVE+  E  ++L    ENGKLD+GP   E I FGSHG   E V G+ +NVS+ N 
Sbjct: 9   EAAPAPVEAGTEAESALLHDKENGKLDQGPGVTEPIKFGSHGD--EPVKGEGNNVSD-NF 65

Query: 62  PKDVGEEWPEPRVIHNFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRV 121
           PKDV +EWP P+ IH+FYF+++R YDDPKI+AK+D  D+EIQRRNQAR Q+ + LRAK+ 
Sbjct: 66  PKDVVDEWPAPKQIHSFYFVKYRSYDDPKIKAKLDQADKEIQRRNQARFQITEGLRAKKS 125

Query: 122 IRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA---RSGGICSSEEE 178
            R  + +QL+SLK E  Q++ ++D KRKEMEPL  ALGKLR+TN+A   R G +CSSEEE
Sbjct: 126 DRAQMLSQLKSLKAEDEQFRMIVDGKRKEMEPLQHALGKLRSTNSANRERGGTLCSSEEE 185

Query: 179 LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 238
           L+DLI+SL Y +QHE IPL+EEKQILREIKQLE TREKV+A AAMRAKIQ+S+G+KE IQ
Sbjct: 186 LNDLIQSLHYHMQHESIPLAEEKQILREIKQLEATREKVIAGAAMRAKIQDSLGQKEAIQ 245

Query: 239 DQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 298
           DQVKL+G DLDGV+KE Q V AKI  L   +K +D EI++L +E+  V+EKRDKA+  ++
Sbjct: 246 DQVKLIGVDLDGVRKEKQVVMAKIKQLRDDLKGIDSEIDSLMEELKAVSEKRDKAYEGLQ 305

Query: 299 ELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 358
            LRKQRDEGNA+F+Q RALLN A+ ++ KKD++ L+ELS+SEVEK+M+LW++NKAFR+DY
Sbjct: 306 ALRKQRDEGNAHFYQNRALLNNARELAGKKDIKALEELSHSEVEKFMSLWSSNKAFREDY 365

Query: 359 EKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETSVPSEPEIVAKPNVKQSKGDSKSASQKD 418
           EKR+L SLD RQLSRDGR+RNPDEKPLVV E   PSE E VAK  VK+SK DSK   Q D
Sbjct: 366 EKRILPSLDSRQLSRDGRMRNPDEKPLVVLEAPTPSEXETVAKAPVKRSKEDSKPPPQHD 425

Query: 419 TLPTQKVQKEAAKKETEDTADFE---------IPVVEK----PASEKKVDEAKLREMKKE 465
           TLP+QKVQKEA  + T+     E         IP +EK    P+ + +VD AKL+EMK+E
Sbjct: 426 TLPSQKVQKEANDRATDSGITLERGDKEEKEIIPGLEKHQKGPSLDNEVDAAKLKEMKRE 485

Query: 466 EDRAKAREGMERKRKKEEAKVAKAALR----AEKQRKEIIYGTYFF 507
           E+ AKA+  +ERK+K  +   AKAA+R    AEK+ KEII   + F
Sbjct: 486 EEIAKAKLALERKKKLADKSAAKAAIRAQKEAEKKLKEIITSLFIF 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493838|ref|XP_002285016.2| PREDICTED: uncharacterized protein LOC100267528 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114940|ref|XP_002316898.1| predicted protein [Populus trichocarpa] gi|222859963|gb|EEE97510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128300|ref|XP_002329130.1| predicted protein [Populus trichocarpa] gi|222869799|gb|EEF06930.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586536|ref|XP_002533906.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223526139|gb|EEF28480.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449447207|ref|XP_004141360.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus] gi|449498721|ref|XP_004160615.1| PREDICTED: proton pump-interactor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142999|emb|CBI20294.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517130|ref|XP_003527243.1| PREDICTED: uncharacterized protein LOC100793963 [Glycine max] Back     alignment and taxonomy information
>gi|356549720|ref|XP_003543239.1| PREDICTED: uncharacterized protein LOC100819875 [Glycine max] Back     alignment and taxonomy information
>gi|357452965|ref|XP_003596759.1| hypothetical protein MTR_2g085330 [Medicago truncatula] gi|355485807|gb|AES67010.1| hypothetical protein MTR_2g085330 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query520
TAIR|locus:2124019612 PPI1 "proton pump interactor 1 0.851 0.723 0.530 7.7e-119
TAIR|locus:2087115589 PPI2 "proton pump interactor 2 0.8 0.706 0.346 5.7e-59
TAIR|locus:2037365 1364 AT1G20970 "AT1G20970" [Arabido 0.690 0.263 0.277 3.1e-39
TAIR|locus:2147366576 AT5G36690 "AT5G36690" [Arabido 0.544 0.491 0.351 4.1e-37
TAIR|locus:2149084576 AT5G36780 "AT5G36780" [Arabido 0.544 0.491 0.351 4.1e-37
TAIR|locus:2037059439 AT1G53110 "AT1G53110" [Arabido 0.405 0.480 0.330 2.1e-34
UNIPROTKB|O42184 1433 CLIP1 "CAP-Gly domain-containi 0.696 0.252 0.233 6.7e-09
MGI|MGI:1914944600 Ift74 "intraflagellar transpor 0.601 0.521 0.213 1.6e-08
UNIPROTKB|E2RG29600 IFT74 "Uncharacterized protein 0.605 0.525 0.222 2e-08
CGD|CAL0002819462 BFR1 [Candida albicans (taxid: 0.682 0.768 0.214 2.1e-08
TAIR|locus:2124019 PPI1 "proton pump interactor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 244/460 (53%), Positives = 335/460 (72%)

Query:    22 QENGKLDKGPVKDESIIFGSHGGVGELV-NGKESN--VSNANLPKDVGEEWPEPRVIHNF 78
             ++NGKLD+G   D  I FGS   VGEL  N +E+N  V N++ PK+  EEWP  + IH+F
Sbjct:    23 EKNGKLDQGKGDDAPINFGS---VGELPKNAEENNNKVVNSDAPKNAAEEWPVAKQIHSF 79

Query:    79 YFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGR 138
             Y +++R Y DPKI+AK+DL D+E+++ N+AR  ++D+LRAKR  R +L   L  LK+E +
Sbjct:    80 YLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKRAERSELFDLLDPLKSERK 139

Query:   139 QYKSVMDDKRKEMEPLHQALGKLRTTN--NARSGGICSSEEELDDLIRSLQYRIQHEIIP 196
              + ++ D+KRKEMEPL QALGKLR+ +  +AR   ICSSEEEL+ +I S QYRIQHE IP
Sbjct:   140 GFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESIP 199

Query:   197 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQ 256
             L+EEKQIL+EI+ LEGTR+KV+ANAAMRAKI+ESMG+K+DIQ QVKLMG+ LDGVKKE Q
Sbjct:   200 LTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQ 259

Query:   257 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 316
             A+ A+I+ L  K+KA  +EI  L+ E+  V+EKRDKA++NI +LR+QRDE N+ ++Q R 
Sbjct:   260 AISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETNSEYYQNRT 319

Query:   317 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 376
             +LN+A+ ++ +K++  L+ L+N+EVEK+++LW + K FR+DYEKR+LQSLD RQLSRDGR
Sbjct:   320 VLNKARDLAAQKNISELEALANAEVEKFISLWCSKKNFREDYEKRILQSLDSRQLSRDGR 379

Query:   377 IRNPDEKPLVVAETS----VPSEPEIVAKPNVK-QSKGDSKSASQKDTLPTQKVQK--EA 429
             +RNPDEKPL+  E +     PSE E+V K   K Q K +  SA + D    Q  +K  +A
Sbjct:   380 MRNPDEKPLIAPEAAPSKATPSETEVVPKAKAKPQPKEEPVSAPKPDATVAQNTEKAKDA 439

Query:   430 AK-KETEDTADFEIPVVEKPASEKK-VDEAKLREMKKEED 467
              K K   D  D E+  + KP  E+K VD A  +EM+K+E+
Sbjct:   440 VKVKNVADDDDDEVYGLGKPQKEEKPVDAATAKEMRKQEE 479
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0005886 "plasma membrane" evidence=IDA
GO:0010155 "regulation of proton transport" evidence=IDA;TAS
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
TAIR|locus:2087115 PPI2 "proton pump interactor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037365 AT1G20970 "AT1G20970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147366 AT5G36690 "AT5G36690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149084 AT5G36780 "AT5G36780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037059 AT1G53110 "AT1G53110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O42184 CLIP1 "CAP-Gly domain-containing linker protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1914944 Ift74 "intraflagellar transport 74" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RG29 IFT74 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
CGD|CAL0002819 BFR1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23144PPI1_ARATHNo assigned EC number0.52040.89230.7581yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 59/349 (16%), Positives = 155/349 (44%), Gaps = 24/349 (6%)

Query: 154 LHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGT 213
             +A  KL  T          + E L+DL+  L+ +++     L  + +     ++L+  
Sbjct: 174 KEEAERKLERTE--------ENLERLEDLLEELEKQLE----KLERQAEKAERYQELKAE 221

Query: 214 REKVMANAAMRAKIQESMGKKEDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALD 273
             + +  A + AK++E   + E++++++  +  +L+ +++E +    +I  L+ +++ L 
Sbjct: 222 LRE-LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280

Query: 274 EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL--NEAKAMSVKKDVQ 331
           EE+E LQ+E+ ++ E+ ++    I  LR++ +E      +    L   + K  ++K++++
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 332 GLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEKPLVVAETS 391
             + L   E+E+ +      K   ++    LL+ L+    +    +   + +   +    
Sbjct: 341 ERETLL-EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 392 VPSEPEIVAKPNVKQSKGDSKSASQKDTLPTQKVQKEAAKKETEDTADFEIPVVEKPASE 451
              + EI       + + +  S   +D     K  +   ++   +  +    + E    E
Sbjct: 400 EELKREI----ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL---E 452

Query: 452 KKVDEAKLREMKKEEDRAKAREGMERKRKK-EEAKVAKAALRAEKQRKE 499
           ++++E + R  + E + A+ +E ++R  K+    +     L AE++  +
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 520
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 99.57
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 98.89
PRK03918880 chromosome segregation protein; Provisional 98.1
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.89
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.89
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.86
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.84
PHA02562562 46 endonuclease subunit; Provisional 97.83
PRK11637428 AmiB activator; Provisional 97.8
PRK04778569 septation ring formation regulator EzrA; Provision 97.76
PRK02224 880 chromosome segregation protein; Provisional 97.75
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.74
PRK02224 880 chromosome segregation protein; Provisional 97.72
PRK03918880 chromosome segregation protein; Provisional 97.71
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.71
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.68
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.57
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.56
PF00038312 Filament: Intermediate filament protein; InterPro: 97.55
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 97.5
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.5
PRK11637428 AmiB activator; Provisional 97.43
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.39
PRK01156895 chromosome segregation protein; Provisional 97.37
KOG0964 1200 consensus Structural maintenance of chromosome pro 97.34
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.31
KOG0964 1200 consensus Structural maintenance of chromosome pro 97.27
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.15
PRK01156895 chromosome segregation protein; Provisional 97.1
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 96.93
PRK04778569 septation ring formation regulator EzrA; Provision 96.91
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.86
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.81
KOG09331174 consensus Structural maintenance of chromosome pro 96.75
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 96.73
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 96.69
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.68
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.66
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 96.53
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.38
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.16
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.11
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.04
KOG0979 1072 consensus Structural maintenance of chromosome pro 96.01
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.95
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.91
PRK04863 1486 mukB cell division protein MukB; Provisional 95.79
PRK04863 1486 mukB cell division protein MukB; Provisional 95.78
PRK09039343 hypothetical protein; Validated 95.77
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.72
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 95.71
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.59
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.53
KOG0933 1174 consensus Structural maintenance of chromosome pro 95.44
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.37
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 95.12
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.01
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.99
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.86
KOG4673 961 consensus Transcription factor TMF, TATA element m 94.78
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.74
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 94.71
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.63
PRK09039343 hypothetical protein; Validated 94.58
KOG0018 1141 consensus Structural maintenance of chromosome pro 94.39
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.23
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 94.13
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.06
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 93.88
TIGR00634563 recN DNA repair protein RecN. All proteins in this 93.75
COG4477570 EzrA Negative regulator of septation ring formatio 93.69
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 93.51
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.24
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.84
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 92.76
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 92.73
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 92.62
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 92.56
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 92.47
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.32
COG3883265 Uncharacterized protein conserved in bacteria [Fun 92.31
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 92.3
KOG4673 961 consensus Transcription factor TMF, TATA element m 92.1
PF00038312 Filament: Intermediate filament protein; InterPro: 91.44
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 91.24
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 90.91
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 90.81
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 90.76
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 90.25
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.9
PF13166712 AAA_13: AAA domain 89.3
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 89.2
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 89.12
COG5185622 HEC1 Protein involved in chromosome segregation, i 88.98
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 88.93
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 88.9
COG4026290 Uncharacterized protein containing TOPRIM domain, 88.65
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 88.61
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.49
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 88.41
COG3883265 Uncharacterized protein conserved in bacteria [Fun 88.19
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.07
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 88.04
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 87.94
KOG0971 1243 consensus Microtubule-associated protein dynactin 87.85
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 87.58
PF14662193 CCDC155: Coiled-coil region of CCDC155 87.21
COG4372499 Uncharacterized protein conserved in bacteria with 87.15
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 86.81
KOG0963629 consensus Transcription factor/CCAAT displacement 86.78
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 86.68
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 86.18
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 85.91
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 85.9
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 85.87
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 85.86
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 85.85
COG5185622 HEC1 Protein involved in chromosome segregation, i 85.78
KOG1962216 consensus B-cell receptor-associated protein and r 85.67
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 85.11
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 85.09
PF03999 619 MAP65_ASE1: Microtubule associated protein (MAP65/ 85.06
PRK10884206 SH3 domain-containing protein; Provisional 85.0
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 84.83
KOG4302 660 consensus Microtubule-associated protein essential 84.76
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 84.56
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 83.81
PRK10929 1109 putative mechanosensitive channel protein; Provisi 83.63
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.6
PRK11281 1113 hypothetical protein; Provisional 83.6
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.52
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 83.24
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 83.15
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 82.58
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 82.35
KOG00181141 consensus Structural maintenance of chromosome pro 82.05
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 82.0
KOG1962216 consensus B-cell receptor-associated protein and r 81.86
PRK10869553 recombination and repair protein; Provisional 81.79
PF13949296 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI 81.78
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 81.41
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information 
Probab=99.57  E-value=1.7e-11  Score=124.64  Aligned_cols=220  Identities=21%  Similarity=0.312  Sum_probs=175.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHHH---------
Q 009998           89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG---------  159 (520)
Q Consensus        89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L~---------  159 (520)
                      +.+..++..+...+..+++.|+.++..+...+++|++|..+.+.++++-+.+++.+++.++++..++....         
T Consensus         9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL   88 (294)
T COG1340           9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL   88 (294)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777888999999999999999999999999999999999999888888888887777777754332         


Q ss_pred             -----hhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009998          160 -----KLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK  234 (520)
Q Consensus       160 -----klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSLsL~EEKklLkEIk~Lkk~Rk~v~a~~~~~akiq~s~~~k  234 (520)
                           .++...+-.. +...|+..|...|.+|+|.++|.+||+.+|+++|+.|+.|++....+....          .  
T Consensus        89 ~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~----------e--  155 (294)
T COG1340          89 RKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL----------E--  155 (294)
T ss_pred             HHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH----------H--
Confidence                 2222222111 457899999999999999999999999999999999999999887644311          1  


Q ss_pred             hhhHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009998          235 EDIQDQVKLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY  314 (520)
Q Consensus       235 e~~~d~iK~l~~eLd~lKkeldalr~kIkel~~k~~al~~ei~~Lqeel~al~~krdeay~~i~~LRke~de~n~~f~~~  314 (520)
                        ..+.++.+.+++++++++...++.+|.++..+...+..++..+..+.|.+....|++...+-.++...++.+..|-+.
T Consensus       156 --~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~  233 (294)
T COG1340         156 --ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL  233 (294)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence              223555666778888999999999999998888888888888888888888888888888888888888777777776


Q ss_pred             HHHHHHHHH
Q 009998          315 RALLNEAKA  323 (520)
Q Consensus       315 r~~~~kare  323 (520)
                      ...++....
T Consensus       234 ~~elre~~k  242 (294)
T COG1340         234 QNELRELEK  242 (294)
T ss_pred             HHHHHHHHH
Confidence            666665543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query520
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 72/514 (14%), Positives = 153/514 (29%), Gaps = 151/514 (29%)

Query: 67  EEWPEPRVIHNFY-FIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGD 125
            E  +P ++   Y   R R Y+D ++ AK           N +R+Q   +LR        
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAK----------YNVSRLQPYLKLRQA------ 143

Query: 126 LAAQLRSLKTE-----------GRQYKSVM------DDKRKEMEPLHQALGKLRTTNNAR 168
               L  L+             G   K+ +        K +                   
Sbjct: 144 ----LLELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMD--------------- 181

Query: 169 SGGI-------CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANA 221
              I       C+S E + ++++ L Y+I       S+         ++   + +     
Sbjct: 182 -FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAE----- 233

Query: 222 AMRAKIQESMGKK-----EDIQD---------QVKLMGSDLDGVKKESQAVWAKISHLEG 267
            +R  ++    +       ++Q+           K++      +    + V   +S    
Sbjct: 234 -LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------LTTRFKQVTDFLSAATT 286

Query: 268 KVKALDEEIEAL-QQEVNDVAEKRDKAFANIK--ELRKQRDEGNAYFFQYRALLNEAKAM 324
              +LD     L   EV  +  K    + + +  +L ++    N      R L     ++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNP-----RRL-----SI 332

Query: 325 SVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK- 383
             +    GL    N    K++                 L+  + R++     +  P    
Sbjct: 333 IAESIRDGLATWDNW---KHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHI 387

Query: 384 PLVVAET----SVPSEPEIVAKPNVKQS--KGDSKSASQKDTLPTQKVQKEAAKKETEDT 437
           P ++        + S+  +V     K S  +   K ++   ++P+  ++    K + E+ 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLEL---KVKLENE 442

Query: 438 ADFEIPVVEKPASEKKVDEAK-----------------LREMKKEEDRAKAREG------ 474
                 +V+     K  D                    L+ ++  E     R        
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 475 MERK-RKKEEAKVAKAALRAEKQRKEIIYGTYFF 507
           +E+K R    A  A  ++    Q+ +  Y  Y  
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLK-FYKPYIC 535
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.12
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.94
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.81
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.95
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.92
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.9
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.6
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.67
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 88.89
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 88.82
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.73
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 88.4
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 85.94
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 85.74
3bas_A89 Myosin heavy chain, striated muscle/general contro 85.62
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 85.53
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.91
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 83.2
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 82.75
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 82.74
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 82.52
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 82.08
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 81.7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.12  E-value=0.0059  Score=56.92  Aligned_cols=70  Identities=13%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 009998           89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRVIRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL  158 (520)
Q Consensus        89 ~~lkakI~~a~keI~kl~q~R~~I~akl~~~r~~R~eL~~qLkaLr~qqk~~r~~~~eK~kEik~Lq~~L  158 (520)
                      +.|+++|..+..++..+......+...+..+......+...+..+......++..+......+..++..+
T Consensus         2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (284)
T 1c1g_A            2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL   71 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888877777777777777777666666666666666666555555555555555444433
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query520
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 81.67
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=81.67  E-value=5.3  Score=38.88  Aligned_cols=62  Identities=10%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             HHhhHHHHHHHHhhhhhhccccCCCCCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHH
Q 009998          148 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKVM  218 (520)
Q Consensus       148 ~kEik~Lq~~L~klre~~nArsk~~f~SveEID~rI~~LE~~IqhgSL--sL~EEKklLkEIk~Lkk~Rk~v~  218 (520)
                      .++|..|...+..|+.         +..++.+..++..||.++....+  .-..=+++++|++.|+..-..+.
T Consensus         5 ~~~i~eL~~rl~~Lr~---------~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~   68 (362)
T d1gqea_           5 NNRIQDLTERSDVLRG---------YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD   68 (362)
T ss_dssp             HHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---------HcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666653         55789999999999999998887  44555778899999988865533