Citrus Sinensis ID: 010006
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | 2.2.26 [Sep-21-2011] | |||||||
| P52417 | 512 | Glucose-1-phosphate adeny | N/A | no | 0.984 | 1.0 | 0.885 | 0.0 | |
| Q9M462 | 520 | Glucose-1-phosphate adeny | N/A | no | 0.978 | 0.978 | 0.870 | 0.0 | |
| P23509 | 521 | Glucose-1-phosphate adeny | N/A | no | 0.988 | 0.986 | 0.877 | 0.0 | |
| Q42882 | 521 | Glucose-1-phosphate adeny | N/A | no | 0.988 | 0.986 | 0.867 | 0.0 | |
| P55228 | 520 | Glucose-1-phosphate adeny | yes | no | 0.990 | 0.990 | 0.853 | 0.0 | |
| P52416 | 508 | Glucose-1-phosphate adeny | N/A | no | 0.913 | 0.935 | 0.905 | 0.0 | |
| P55232 | 489 | Glucose-1-phosphate adeny | N/A | no | 0.890 | 0.946 | 0.905 | 0.0 | |
| P15280 | 514 | Glucose-1-phosphate adeny | yes | no | 0.882 | 0.892 | 0.906 | 0.0 | |
| P55238 | 513 | Glucose-1-phosphate adeny | N/A | no | 0.890 | 0.902 | 0.904 | 0.0 | |
| P30523 | 473 | Glucose-1-phosphate adeny | N/A | no | 0.857 | 0.942 | 0.899 | 0.0 |
| >sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/517 (88%), Positives = 492/517 (95%), Gaps = 5/517 (0%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRSERR 63
MA+IG LKVP S S++++SS+S +++ + L+F+SS LSGDKIF+ + R S R
Sbjct: 1 MAAIGVLKVPPSSSSSSSSSSS-----KAIARNLSFTSSHLSGDKIFTLSGRTRRTSGRN 55
Query: 64 PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 123
P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL
Sbjct: 56 PFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 115
Query: 124 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 183
IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENP
Sbjct: 116 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENP 175
Query: 184 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243
NWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVAALPMD
Sbjct: 176 NWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAALPMD 235
Query: 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303
E RATAFGLMKIDEEGRIIEFSE PKGEQLKAMKVDTTILGLDD+RAKEMPYIASMGIYV
Sbjct: 236 EARATAFGLMKIDEEGRIIEFSENPKGEQLKAMKVDTTILGLDDDRAKEMPYIASMGIYV 295
Query: 304 ISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363
+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYNANLGI
Sbjct: 296 VSKHVMLDLLRDKFPGANDFGSEVIPGATELGMRVQAYLYDGYWEDIGTIEAFYNANLGI 355
Query: 364 TKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSC 423
TKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGLRSC
Sbjct: 356 TKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRSC 415
Query: 424 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483
ISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI
Sbjct: 416 ISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKI 475
Query: 484 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 476 INSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Vicia faba (taxid: 3906) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/531 (87%), Positives = 494/531 (93%), Gaps = 22/531 (4%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRR----SVVKRLAFSSSQLSGDK-------I 49
MA+MA+IGSLKVPSS S+NH+RR S K L+FSSS L+G+K I
Sbjct: 1 MATMAAIGSLKVPSS---------SSNHTRRLSSSSQRKTLSFSSSSLTGEKLNPTQEII 51
Query: 50 FSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKK 109
S G+ R R P +VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKK
Sbjct: 52 ISNLPRGNER--RTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKK 109
Query: 110 RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169
RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG
Sbjct: 110 RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169
Query: 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR 229
FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHR
Sbjct: 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHR 229
Query: 230 ETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDER 289
ETDADITVAALPMDEKRATAFGLMKID+EGRIIEF+EKPKGEQLKAMKVDTTILGLDDER
Sbjct: 230 ETDADITVAALPMDEKRATAFGLMKIDDEGRIIEFAEKPKGEQLKAMKVDTTILGLDDER 289
Query: 290 AKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWED 349
AKEMP+IASMGIYV+SK+VML+LLRD+FPGANDFGSEVIPGAT +G+RVQAYLYDGYWED
Sbjct: 290 AKEMPFIASMGIYVVSKNVMLDLLRDQFPGANDFGSEVIPGATDLGLRVQAYLYDGYWED 349
Query: 350 IGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK 409
IGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK
Sbjct: 350 IGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK 409
Query: 410 NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRA 469
NCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR LAAKGS+PIGIG++SHIKRA
Sbjct: 410 NCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRA 469
Query: 470 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
IIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 470 IIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Brassica napus (taxid: 3708) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/521 (87%), Positives = 485/521 (93%), Gaps = 7/521 (1%)
Query: 5 ASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSS-QLSGDKIF---SKAVTGDRRS 60
ASIG+LK SSPS+ + N S R+V R SS L+GDK+ S G R +
Sbjct: 3 ASIGALK--SSPSSNNCINERRNDSTRAVSSRNLSFSSSHLAGDKLMPVSSLRSQGVRFN 60
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 61 VRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 120
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS
Sbjct: 121 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 180
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENP+WFQGTADAVRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 181 PENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 240
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASM
Sbjct: 241 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 300
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 301 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 360
Query: 360 NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
NLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 361 NLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 420
Query: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
LRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGD
Sbjct: 421 LRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD 480
Query: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
NVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 481 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/521 (86%), Positives = 483/521 (92%), Gaps = 7/521 (1%)
Query: 5 ASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSS-QLSGDKIF---SKAVTGDRRS 60
ASIG+LK SSPS+ + N S R++ R SS L+GDK+ S G R +
Sbjct: 3 ASIGALK--SSPSSHNCINERRNDSTRAISSRNLSFSSSHLAGDKLMPVSSLRSQGVRFN 60
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 61 VRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 120
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG YKNEGFVEVLAAQQS
Sbjct: 121 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGEYKNEGFVEVLAAQQS 180
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENP+WFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 181 PENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 240
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASM
Sbjct: 241 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASM 300
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 301 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 360
Query: 360 NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
NLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 361 NLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 420
Query: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
LRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN KRAIIDKNARIGD
Sbjct: 421 LRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGD 480
Query: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
NVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct: 481 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521
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This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/525 (85%), Positives = 486/525 (92%), Gaps = 10/525 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKR-LAFSSSQLSGDKIFSKAVTGDRR 59
MAS+++IG LKVP + ++SNS + +V R L+FSSS S D S T R
Sbjct: 1 MASVSAIGVLKVPPA-----STSNSTGKATEAVPTRTLSFSSSVTSSDDKISLKSTVSRL 55
Query: 60 SE----RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV 115
+ R PI+VSP+AVSDS+NSQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAV
Sbjct: 56 CKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAV 115
Query: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA
Sbjct: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
Query: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADI 235
AQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADI
Sbjct: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADI 235
Query: 236 TVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295
TVAALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGE LKAMKVDTTILGLDD+RAKEMP+
Sbjct: 236 TVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPF 295
Query: 296 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEA 355
IASMGIYV+S+DVML+LLR++FPGANDFGSEVIPGATS+G+RVQAYLYDGYWEDIGTIEA
Sbjct: 296 IASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEA 355
Query: 356 FYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH 415
FYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH
Sbjct: 356 FYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH 415
Query: 416 SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475
SVVGLRSCISEGAIIED+LLMGADYYET ++ L+AKGSVPIGIGKNSHIKRAIIDKNA
Sbjct: 416 SVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNA 475
Query: 476 RIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
RIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct: 476 RIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/477 (90%), Positives = 463/477 (97%), Gaps = 2/477 (0%)
Query: 46 GDKIFSKAVTGDRRSE--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRL 103
G+KI + + G R + + ++P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRL
Sbjct: 32 GNKILTVSGNGAPRGRCTLKHVFLTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRL 91
Query: 104 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163
YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+G
Sbjct: 92 YPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLG 151
Query: 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYER 223
GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+
Sbjct: 152 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEK 211
Query: 224 FIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTIL 283
FIQAHRE+DADITVAALPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTIL
Sbjct: 212 FIQAHRESDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTIL 271
Query: 284 GLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 343
GLDDERAKEMP+IASMGIYVISK+VML+LLRDKFPGANDFGSEVIPGATSIGMRVQAYLY
Sbjct: 272 GLDDERAKEMPFIASMGIYVISKNVMLDLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 331
Query: 344 DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 403
DGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIG
Sbjct: 332 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIG 391
Query: 404 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 463
EGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGKN
Sbjct: 392 EGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKN 451
Query: 464 SHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
SHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct: 452 SHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Vicia faba (taxid: 3906) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/478 (90%), Positives = 454/478 (94%), Gaps = 15/478 (3%)
Query: 46 GDKIFSKAVTGDRR---SERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTR 102
GDKI + + R S R PIVVSP+AVSDSKNSQTCLDPEASRSVLGIILGGGAGTR
Sbjct: 24 GDKIQTTSFLNRRYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTR 83
Query: 103 LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM 162
LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM
Sbjct: 84 LYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM 143
Query: 163 GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE 222
GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE
Sbjct: 144 GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYE 203
Query: 223 RFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTI 282
RF+QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTI
Sbjct: 204 RFVQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTI 263
Query: 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYL 342
LGLDDERAKEMP+IASMGIYVISKDVMLNLLR++FPGANDFGSEVIPGATSIG+RVQAYL
Sbjct: 264 LGLDDERAKEMPFIASMGIYVISKDVMLNLLREQFPGANDFGSEVIPGATSIGLRVQAYL 323
Query: 343 YDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVI 402
YDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVI
Sbjct: 324 YDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVI 383
Query: 403 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 462
GEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG
Sbjct: 384 GEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG- 442
Query: 463 NSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct: 443 -----------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4 | Back alignment and function description |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/459 (90%), Positives = 447/459 (97%)
Query: 62 RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY 121
RRP+V SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY
Sbjct: 56 RRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY 115
Query: 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE 181
RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY +N+GGYKNEGFVEVLAAQQSP+
Sbjct: 116 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPD 175
Query: 182 NPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALP 241
NPNWFQGTADAVRQYLWLFEEHNV+EFL+LAGDHLYRMDYE+FIQAHRETD+DITVAALP
Sbjct: 176 NPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALP 235
Query: 242 MDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGI 301
MDEKRATAFGLMKIDEEGRI+EF+EKPKGEQLKAM VDTTILGLDD RAKEMPYIASMGI
Sbjct: 236 MDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGI 295
Query: 302 YVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361
YVISK+VML LLR++FPGANDFGSEVIPGAT+IGMRVQAYLYDGYWEDIGTIEAFYNANL
Sbjct: 296 YVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANL 355
Query: 362 GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLR 421
GITKKP+PDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLR
Sbjct: 356 GITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLR 415
Query: 422 SCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNV 481
SCISEGAIIED+LLMGADYYET+AD++ L KG +PIGIGKN HI+RAIIDKNARIGDNV
Sbjct: 416 SCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNV 475
Query: 482 KIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
KI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 476 KIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1 | Back alignment and function description |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/463 (90%), Positives = 445/463 (96%)
Query: 58 RRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 117
R RRP SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPL
Sbjct: 51 RPVPRRPFFFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPL 110
Query: 118 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 177
GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQ
Sbjct: 111 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQ 170
Query: 178 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV 237
QSP+NP+WFQGTADAVRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITV
Sbjct: 171 QSPDNPDWFQGTADAVRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITV 230
Query: 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297
AALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGEQLKAM VDTTILGL+D RAKEMPYIA
Sbjct: 231 AALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLEDARAKEMPYIA 290
Query: 298 SMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY 357
SMGIYVISK VML LLR++FPGANDFGSEVIPGATS GMRVQAYLYDGYWEDIGTIEAFY
Sbjct: 291 SMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFY 350
Query: 358 NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV 417
NANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSV
Sbjct: 351 NANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSV 410
Query: 418 VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477
VGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARI
Sbjct: 411 VGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARI 470
Query: 478 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
GDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 471 GDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1 | Back alignment and function description |
|---|
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/446 (89%), Positives = 425/446 (95%)
Query: 75 SKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 134
S + L+P SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS
Sbjct: 28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 87
Query: 135 NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVR 194
NISKIYV TQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADAVR
Sbjct: 88 NISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADAVR 147
Query: 195 QYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK 254
QYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMK
Sbjct: 148 QYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMK 207
Query: 255 IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314
IDEEGRIIEF+EKPKGEQLKAM VDTTILGLDD RAKEMPYIASMGIYVISK VML LLR
Sbjct: 208 IDEEGRIIEFAEKPKGEQLKAMMVDTTILGLDDARAKEMPYIASMGIYVISKHVMLQLLR 267
Query: 315 DKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFY 374
++FPGANDFGSEVIPGATS GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFY
Sbjct: 268 EQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFY 327
Query: 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTL 434
DRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTL
Sbjct: 328 DRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTL 387
Query: 435 LMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 494
LMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAAR
Sbjct: 388 LMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAAR 447
Query: 495 ETDGYFIKSGIVTIIKDALIPSGTII 520
ETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct: 448 ETDGYFIKSGIVTVIKDALLPSGTVI 473
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| 111660950 | 520 | ADP-glucose pyrophosphorylase small subu | 1.0 | 1.0 | 0.998 | 0.0 | |
| 5917789 | 515 | ADP-glucose pyrophosphorylase small subu | 0.990 | 1.0 | 0.957 | 0.0 | |
| 356501685 | 515 | PREDICTED: glucose-1-phosphate adenylylt | 0.990 | 1.0 | 0.890 | 0.0 | |
| 356501687 | 516 | PREDICTED: glucose-1-phosphate adenylylt | 0.990 | 0.998 | 0.888 | 0.0 | |
| 89089752 | 520 | ADP-glucose pyrophosphorylase small subu | 0.992 | 0.992 | 0.896 | 0.0 | |
| 1237080 | 516 | ADP-glucose pyrophosphorylase [Pisum sat | 0.990 | 0.998 | 0.892 | 0.0 | |
| 7671230 | 523 | ADP-glucose pyrophosphorylase catalytic | 0.990 | 0.984 | 0.859 | 0.0 | |
| 260751192 | 515 | ADP-glucose pyrophosphorylase small subu | 0.990 | 1.0 | 0.888 | 0.0 | |
| 357462397 | 514 | Glucose-1-phosphate adenylyltransferase | 0.984 | 0.996 | 0.892 | 0.0 | |
| 388512925 | 520 | unknown [Lotus japonicus] | 0.994 | 0.994 | 0.883 | 0.0 |
| >gi|111660950|gb|ABH12112.1| ADP-glucose pyrophosphorylase small subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/520 (99%), Positives = 520/520 (100%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS
Sbjct: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL
Sbjct: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG
Sbjct: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
Query: 361 LGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 420
LGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL
Sbjct: 361 LGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 420
Query: 421 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480
RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK+ARIGDN
Sbjct: 421 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKDARIGDN 480
Query: 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII
Sbjct: 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917789|gb|AAD56041.1|AF184597_1 ADP-glucose pyrophosphorylase small subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/517 (95%), Positives = 499/517 (96%), Gaps = 2/517 (0%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRSERR 63
MASIGSLKVPSSPSTA TSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRR ERR
Sbjct: 1 MASIGSLKVPSSPSTAATSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRRERR 60
Query: 64 PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 123
+ QAVSDSKNS LDPEASR VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL
Sbjct: 61 RSLCLLQAVSDSKNSP--LDPEASRRVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRL 118
Query: 124 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 183
IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP
Sbjct: 119 IDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP 178
Query: 184 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243
NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD
Sbjct: 179 NWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 238
Query: 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303
EK ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDD R KEMP+IASMGIYV
Sbjct: 239 EKLATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDARGKEMPFIASMGIYV 298
Query: 304 ISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363
ISKDVML+LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI
Sbjct: 299 ISKDVMLSLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 358
Query: 364 TKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSC 423
TKKPIPDFSFYDRS PIYTQPRYLPPSKMLDADVTDSVIGE CVIKNCKIHHSVVGLRSC
Sbjct: 359 TKKPIPDFSFYDRSDPIYTQPRYLPPSKMLDADVTDSVIGEFCVIKNCKIHHSVVGLRSC 418
Query: 424 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483
ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG+NVKI
Sbjct: 419 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGNNVKI 478
Query: 484 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
VN DSVQEAARETDGYFIKSGI TIIKDALIPSGTII
Sbjct: 479 VNRDSVQEAARETDGYFIKSGIDTIIKDALIPSGTII 515
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501685|ref|XP_003519654.1| PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/520 (89%), Positives = 497/520 (95%), Gaps = 5/520 (0%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IGSL VP S SS S+N R+S + L+FS+SQL GDKI + +V+ +
Sbjct: 1 MASMAAIGSLNVPCS-----ASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKI 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P++V+P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKE+PYIASMG
Sbjct: 236 PMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYV+SK+VML+LLR+KFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 296 IYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 355
Query: 361 LGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 420
LGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL
Sbjct: 356 LGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 415
Query: 421 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480
RSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIG+NSHIKRAIIDKNARIG+N
Sbjct: 416 RSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIGEN 475
Query: 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
VKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 476 VKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501687|ref|XP_003519655.1| PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/521 (88%), Positives = 497/521 (95%), Gaps = 6/521 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IGSL VP S SS S+N R+S + L+FS+SQL GDKI + +V+ +
Sbjct: 1 MASMAAIGSLNVPCS-----ASSRSSNVGRKSFPRSLSFSASQLCGDKIHTDSVSFAPKI 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P++V+P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPVIVTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKE+PYIASMG
Sbjct: 236 PMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKELPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMR-VQAYLYDGYWEDIGTIEAFYNA 359
IYV+SK+VML+LLR+KFPGANDFGSEVIPGATSIGMR VQAYLYDGYWEDIGTIEAFYNA
Sbjct: 296 IYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRNVQAYLYDGYWEDIGTIEAFYNA 355
Query: 360 NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
NLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 356 NLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 415
Query: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
LRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIG+NSHIKRAIIDKNARIG+
Sbjct: 416 LRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARIGE 475
Query: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
NVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 476 NVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89089752|gb|ABD60582.1| ADP-glucose pyrophosphorylase small subunit [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/521 (89%), Positives = 491/521 (94%), Gaps = 5/521 (0%)
Query: 4 MASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRR---S 60
MASIG+LK SP + N+ +R + L+FSSS + GDK+ S A ++ S
Sbjct: 1 MASIGALKSSPSPKNCI-NERRNDATRAMSFRNLSFSSSHIYGDKLMSMATLHSQQRHSS 59
Query: 61 ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
ERR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 60 ERRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS
Sbjct: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAA
Sbjct: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAA 239
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDEKRATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKEMP+IASM
Sbjct: 240 LPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASM 299
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNA 359
Query: 360 NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
NLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG
Sbjct: 360 NLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
Query: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
LRSCISEGAIIED+LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD
Sbjct: 420 LRSCISEGAIIEDSLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
Query: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
NVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 480 NVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 520
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1237080|emb|CAA65539.1| ADP-glucose pyrophosphorylase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/521 (89%), Positives = 500/521 (95%), Gaps = 6/521 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IG LKVP S S++++SS+S S +++ + L+F+SSQL GDKIF+ V+G RRS
Sbjct: 1 MASMAAIGVLKVPPSSSSSSSSSSS---SSKAIARNLSFTSSQLCGDKIFT--VSGTRRS 55
Query: 61 E-RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 119
R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA
Sbjct: 56 SGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA 115
Query: 120 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS 179
NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQS
Sbjct: 116 NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQS 175
Query: 180 PENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239
PENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVA+
Sbjct: 176 PENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAS 235
Query: 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299
LPMDE RATAFGLMKIDEEGRI+EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM
Sbjct: 236 LPMDEARATAFGLMKIDEEGRIVEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 295
Query: 300 GIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
GIYV+SK VML+LLRDKFPGANDFGSEVIPGAT +G+RVQAYLYDGYWEDIGTIEAFYNA
Sbjct: 296 GIYVVSKHVMLDLLRDKFPGANDFGSEVIPGATELGLRVQAYLYDGYWEDIGTIEAFYNA 355
Query: 360 NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG 419
NLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVG
Sbjct: 356 NLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVG 415
Query: 420 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479
LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHIKRAIIDKNARIGD
Sbjct: 416 LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIKRAIIDKNARIGD 475
Query: 480 NVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 476 DVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 516
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7671230|gb|AAF66434.1|AF249915_1 ADP-glucose pyrophosphorylase catalytic subunit [Perilla frutescens] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/525 (85%), Positives = 485/525 (92%), Gaps = 10/525 (1%)
Query: 4 MASIGSLKVPSSP-STATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS-- 60
MA+ K S+P TA + +S + KRL+F++S ++G++I S RRS
Sbjct: 1 MAATAVFK--STPGKTAIANYSSLEDVNSTSFKRLSFAASNVAGERITSPPRLRVRRSRA 58
Query: 61 ----ERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV 115
ERR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILG GAGT+LYPLTKKRAKPAV
Sbjct: 59 GGELERRSPVIVSPKAVSDSQNSQTCLDPDASRSVLGIILGSGAGTKLYPLTKKRAKPAV 118
Query: 116 PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175
P GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA
Sbjct: 119 PFGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 178
Query: 176 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADI 235
AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL+LAGDHLYRMDYERFIQAHRETDADI
Sbjct: 179 AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYERFIQAHRETDADI 238
Query: 236 TVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295
TVAALPMDEKR TAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDD+RAKEMPY
Sbjct: 239 TVAALPMDEKRPTAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDKRAKEMPY 298
Query: 296 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEA 355
IASMGIYV+SKDVMLNLLRD+FP ANDFGSEVIPGAT++G+RVQAYL+DGYWEDIGTIEA
Sbjct: 299 IASMGIYVVSKDVMLNLLRDEFPAANDFGSEVIPGATAMGLRVQAYLFDGYWEDIGTIEA 358
Query: 356 FYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH 415
FYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH
Sbjct: 359 FYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH 418
Query: 416 SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475
SVVGLRSCI+EGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKN+HIKRAIIDKNA
Sbjct: 419 SVVGLRSCIAEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNTHIKRAIIDKNA 478
Query: 476 RIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
RIG+NVKIVN D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct: 479 RIGENVKIVNGDNVQEAARETDGYFIKSGIVTVIKDALIPSGTMI 523
|
Source: Perilla frutescens Species: Perilla frutescens Genus: Perilla Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|260751192|gb|ACX48912.1| ADP-glucose pyrophosphorylase small subunit S1 isoform [Lens culinaris] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/520 (88%), Positives = 494/520 (95%), Gaps = 5/520 (0%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMA+IG LKVP S S++ +SS+S +++ + L+F+SSQLSGDKIF+ + T R S
Sbjct: 1 MASMAAIGVLKVPPSSSSSLSSSSS-----KAIARNLSFTSSQLSGDKIFTVSGTRTRSS 55
Query: 61 ERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN
Sbjct: 56 GRNPFIVSPEAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 115
Query: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSP
Sbjct: 116 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSP 175
Query: 181 ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240
ENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVAAL
Sbjct: 176 ENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAAL 235
Query: 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMG 300
PMDE RATAFGLMKIDEEGRIIEFSEKPKG QLKAMKVDTTILGLDDERAKEMPYIASMG
Sbjct: 236 PMDEARATAFGLMKIDEEGRIIEFSEKPKGGQLKAMKVDTTILGLDDERAKEMPYIASMG 295
Query: 301 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
IYV+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYNAN
Sbjct: 296 IYVVSKHVMLDLLRDKFPGANDFGSEVIPGATDLGMRVQAYLYDGYWEDIGTIEAFYNAN 355
Query: 361 LGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGL 420
LGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGL
Sbjct: 356 LGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGL 415
Query: 421 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480
RSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHIKRAIIDKNARIGD+
Sbjct: 416 RSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIKRAIIDKNARIGDD 475
Query: 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
VKI+NSD+VQEAARET+GYFIKSGIVT+I +A IPSGT+I
Sbjct: 476 VKIINSDNVQEAARETEGYFIKSGIVTVINEAFIPSGTVI 515
|
Source: Lens culinaris Species: Lens culinaris Genus: Lens Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462397|ref|XP_003601480.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula] gi|355490528|gb|AES71731.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/522 (89%), Positives = 496/522 (95%), Gaps = 10/522 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNHSRRSVVKRLAFSSSQLSGDKIFSKAVTGDRRS 60
MASMASIG LKVPSS S++++SS+S +++ + L+F+SSQL GDKI RRS
Sbjct: 1 MASMASIGVLKVPSSSSSSSSSSSS-----KAIARNLSFTSSQLCGDKI---TTVSTRRS 52
Query: 61 E--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 118
+P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG
Sbjct: 53 YGCSKPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG 112
Query: 119 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 178
ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ
Sbjct: 113 ANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ 172
Query: 179 SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVA 238
SPENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVA
Sbjct: 173 SPENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVA 232
Query: 239 ALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298
ALPMDE RATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS
Sbjct: 233 ALPMDEARATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 292
Query: 299 MGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358
MGIYV+SK VML+LLRDKFPGANDFGSEVIPGAT +GMRVQAYLYDGYWEDIGTIEAFYN
Sbjct: 293 MGIYVVSKHVMLDLLRDKFPGANDFGSEVIPGATELGMRVQAYLYDGYWEDIGTIEAFYN 352
Query: 359 ANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVV 418
ANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVV
Sbjct: 353 ANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVV 412
Query: 419 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 478
GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG
Sbjct: 413 GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 472
Query: 479 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
D+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 473 DDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 514
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388512925|gb|AFK44524.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/523 (88%), Positives = 498/523 (95%), Gaps = 6/523 (1%)
Query: 1 MASMASIGSLKVPSSPSTATTSSNSNNH-SRRSVVKRLAFSSSQLSGDKIFSKAVTGDRR 59
MA MA+IG LKVP S S+++TSSN + RS+ L+FS+SQLSGDK+ V R
Sbjct: 1 MACMAAIGVLKVPCSSSSSSTSSNVGRKPTSRSL---LSFSASQLSGDKVSGAVVAPGRG 57
Query: 60 SERR--PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 117
S R P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL
Sbjct: 58 SSNRRSPVIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPL 117
Query: 118 GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 177
GANYRLIDIPVSNCLNSN+SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ
Sbjct: 118 GANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ 177
Query: 178 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITV 237
QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITV
Sbjct: 178 QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITV 237
Query: 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297
AALPMDE+RATAFGLMKIDEEGRIIEF+EKPKGEQLKAMKVDTTILGLDDERAKEMP+IA
Sbjct: 238 AALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIA 297
Query: 298 SMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY 357
SMGIYV+SK+VML+LLR+KFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY
Sbjct: 298 SMGIYVVSKNVMLDLLREKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFY 357
Query: 358 NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV 417
NANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSV
Sbjct: 358 NANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSV 417
Query: 418 VGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477
VGLRSC+SEGAIIEDTLLMGADYYETDAD+RFLAAKGSVPIGIG+NSHIKRAIIDKNARI
Sbjct: 418 VGLRSCVSEGAIIEDTLLMGADYYETDADKRFLAAKGSVPIGIGRNSHIKRAIIDKNARI 477
Query: 478 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520
G+NVKI+N+D+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct: 478 GENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 520
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6558 | 0.8230 | 0.9976 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.6166 | 0.8269 | 0.9976 | yes | no |
| P55228 | GLGS_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8533 | 0.9903 | 0.9903 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.6476 | 0.7980 | 0.9673 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5029 | 0.9134 | 0.9152 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5863 | 0.8307 | 0.8944 | N/A | no |
| P52416 | GLGS1_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.9056 | 0.9134 | 0.9350 | N/A | no |
| P52417 | GLGS2_VICFA | 2, ., 7, ., 7, ., 2, 7 | 0.8858 | 0.9846 | 1.0 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.6535 | 0.8230 | 0.9749 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.6420 | 0.8230 | 0.9976 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.6581 | 0.8230 | 0.9976 | yes | no |
| Q42882 | GLGS_SOLLC | 2, ., 7, ., 7, ., 2, 7 | 0.8675 | 0.9884 | 0.9865 | N/A | no |
| Q9M462 | GLGS_BRANA | 2, ., 7, ., 7, ., 2, 7 | 0.8700 | 0.9788 | 0.9788 | N/A | no |
| P15280 | GLGS_ORYSJ | 2, ., 7, ., 7, ., 2, 7 | 0.9063 | 0.8826 | 0.8929 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.5068 | 0.8192 | 0.8160 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.5337 | 0.8634 | 0.8601 | N/A | no |
| P55232 | GLGS_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.9058 | 0.8903 | 0.9468 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.6027 | 0.8230 | 0.9976 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.6351 | 0.825 | 0.9976 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.5365 | 0.8269 | 0.9148 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.5091 | 0.8192 | 0.8145 | N/A | no |
| P55238 | GLGS_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.9049 | 0.8903 | 0.9025 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.6443 | 0.8230 | 0.9976 | yes | no |
| P30523 | GLGS_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.8991 | 0.8576 | 0.9429 | N/A | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.6581 | 0.8230 | 0.9976 | yes | no |
| P23509 | GLGS_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8771 | 0.9884 | 0.9865 | N/A | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.6166 | 0.8230 | 0.9976 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.6351 | 0.825 | 0.9976 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.998 |
| 4th Layer | 2.7.7.27 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 520 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-170 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-154 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-117 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-117 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 7e-97 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-86 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-79 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-42 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 1e-38 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 4e-33 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 2e-32 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 1e-22 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-22 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 6e-17 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 1e-15 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 4e-15 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 4e-15 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 5e-13 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 2e-11 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 7e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 7e-09 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 9e-09 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 3e-08 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 7e-08 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 6e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 1e-06 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 2e-06 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 2e-06 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 3e-06 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 7e-06 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 3e-05 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 4e-05 | |
| COG1213 | 239 | COG1213, COG1213, Predicted sugar nucleotidyltrans | 2e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 3e-04 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 3e-04 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-04 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 6e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.002 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.002 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 0.002 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 0.003 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 0.003 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 857 bits (2216), Expect = 0.0
Identities = 304/437 (69%), Positives = 357/437 (81%), Gaps = 4/437 (0%)
Query: 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146
+SV IILGGGAGTRL+PLTK+RAKPAVP+G NYRLIDIP+SNC+NS I+KIYVLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 147 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--- 203
SASLNRHLSRAY GG +GFVEVLAA Q+P WFQGTADAVRQ+LWLFE+
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNK 120
Query: 204 NVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIE 263
NV E L+L+GDHLYRMDY F+Q HRE+ ADIT+A LP+DE RA+ FGLMKID+ GRIIE
Sbjct: 121 NVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIE 180
Query: 264 FSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323
FSEKPKG++LKAM+VDTT+LGL E AKE PYIASMGIYV KDV+L LLR +FP ANDF
Sbjct: 181 FSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240
Query: 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQ 383
GSE+IPGA G VQAYL+DGYWEDIGTI++FY ANL +TK+P P FSFYD APIYT
Sbjct: 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFSFYDPDAPIYTS 299
Query: 384 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 443
PR+LPPSK+ D +TDS+I GC ++ CKI HSVVGLRS I EG IEDT++MGADYYET
Sbjct: 300 PRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYET 359
Query: 444 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 503
+ + L A+G VPIGIG+N+ I+ AIIDKNARIG NV I+N D VQEA RE +GY+I+S
Sbjct: 360 EEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRS 419
Query: 504 GIVTIIKDALIPSGTII 520
GIV I+K+A+IP GT+I
Sbjct: 420 GIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 774 bits (2001), Expect = 0.0
Identities = 288/433 (66%), Positives = 353/433 (81%), Gaps = 5/433 (1%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ VL IILGGGAGTRLYPLTK RAKPAVPL YRLIDIP+SNC+NS I+KIYVLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
ASLNRH+S+ Y N G+ + GFVEVLAAQQ+PENP+WFQGTADAVR+YLW F+E +V E
Sbjct: 62 ASLNRHISQTY--NFDGF-SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDE 118
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+L+L+GD LYRMDY F+Q HRET ADIT+A LP+DEK A+ FGLMK D++GRI EFSEK
Sbjct: 119 YLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEK 178
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327
PKG++LKAM VDT+ LGL E AK PY+ASMGIYV S+DV+ +LL +K P DFG E+
Sbjct: 179 PKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLL-NKNPEYTDFGKEI 237
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYL 387
IP A +VQ+YL+DGYWEDIGTIEAFY ANL +T++P P FSFYD APIYT+ RYL
Sbjct: 238 IPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYL 296
Query: 388 PPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADR 447
PPSK+LDA +T+S+I EGC+IKNC IHHSV+G+RS I G IEDTL+MGAD+YE+ +R
Sbjct: 297 PPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEER 356
Query: 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 507
L +G P+GIG+ + IKRAIIDKNARIG+NV+IVN D+V+EA RE G++I+ GIV
Sbjct: 357 EELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVV 416
Query: 508 IIKDALIPSGTII 520
++K+A+IP GT+I
Sbjct: 417 VVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 484 bits (1249), Expect = e-170
Identities = 176/400 (44%), Positives = 249/400 (62%), Gaps = 45/400 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
++L GG G+RL PLTK+RAKPAVP G YR+ID P+SNC+NS I +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
RH+ R + + G+ + GFV +L AQQ +W+QGTADAV Q L L E+++ L+L
Sbjct: 61 RHIQRGW--DFDGFID-GFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLIL 117
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP-KG 270
+GDH+Y+MDYE+ + H E+ AD+T+A +P+ K A+ FG+M++DE+GRI++F EKP
Sbjct: 118 SGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANP 177
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFGSEV 327
+ M +ASMGIY+ KDV+ LL D ++DFG ++
Sbjct: 178 PSIPGM---------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDI 222
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYL 387
IP A G VQAYL+ GYW D+GTI++F+ AN+ + P F YDR PIYT +L
Sbjct: 223 IPRALEEGS-VQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFDLYDRKWPIYTYNEFL 280
Query: 388 PPSKMLDAD--VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 445
PP+K +D+D V DS++ EGC+I + HSV+G+R I G+ +ED+++MG
Sbjct: 281 PPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD------- 333
Query: 446 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485
+GIG+ + I+ AIIDKN RIG+ V I N
Sbjct: 334 ------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 445 bits (1148), Expect = e-154
Identities = 160/437 (36%), Positives = 245/437 (56%), Gaps = 51/437 (11%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
++VL IIL GG G+RL PLTK RAKPAVP G YR+ID +SNC+NS I +I VLTQ+ S
Sbjct: 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKS 63
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SLN H+ R + ++ G V +L AQQ W++GTADA+ Q L + +
Sbjct: 64 HSLNDHIGRGWPWDLDRKN--GGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEY 121
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
L+L+GDH+Y+MDY + H E+ AD+TVA + + A+ FG+M +DE GRIIEF EK
Sbjct: 122 VLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEK 181
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DKFPGANDFG 324
P ++ +ASMGIY+ + D++ LL ++DFG
Sbjct: 182 PADG----PPSNS---------------LASMGIYIFNTDLLKELLEEDAKDPNSSHDFG 222
Query: 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP 384
++IP G V AY + GYW D+GTI+++Y AN+ + P+ + YDR+ PIYT+
Sbjct: 223 KDIIPKLLERGK-VYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELNLYDRNWPIYTKN 280
Query: 385 RYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 443
+ LPP+K + D++V++S++ GC+I + +SV+ I +G++IE++++M
Sbjct: 281 KNLPPAKFVNDSEVSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD----- 334
Query: 444 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 503
+ IG+ + ++RAIIDKN IG+ V I ++ R + +
Sbjct: 335 --------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKR----FRSEE 376
Query: 504 GIVTIIKDALIPSGTII 520
GIV + K +I +
Sbjct: 377 GIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-117
Identities = 153/453 (33%), Positives = 233/453 (51%), Gaps = 71/453 (15%)
Query: 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
A VL I+L GG G RL PLT RAKPAVP G +YRLID +SN +NS +IYVLTQ+
Sbjct: 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQY 61
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNV 205
S SL+RH+S+ + + G ++ + AQQ W+ G+ADA+ Q L L E+ +
Sbjct: 62 KSHSLDRHISQTW--RLSGLLGN-YITPVPAQQR-LGKRWYLGSADAIYQSLNLIEDEDP 117
Query: 206 LEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFS 265
+V DH+YRMD + + H E+ A +TVAA+ + + A+AFG++++D +GRI F
Sbjct: 118 DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFL 177
Query: 266 EKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322
EKP D L D + A +ASMG YV + D +++ LR ++D
Sbjct: 178 EKPA---------DPPGLPDDPDEA-----LASMGNYVFTTDALVDALRRDAADEDSSHD 223
Query: 323 FGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPI 368
G ++IP G +AY+YD GYW D+GTI+A+Y+A++ +
Sbjct: 224 MGGDIIPRLVERG---RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLL-SVH 279
Query: 369 PDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSC 423
P F+ Y+R PIYT LPP+K +D DS++ G +I + +SV+
Sbjct: 280 PVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVV 339
Query: 424 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483
+ GA +ED++LM G IG+ + ++RAI+DKN + I
Sbjct: 340 VESGAEVEDSVLMD----------------GVR---IGRGAVVRRAILDKNVVVPPGATI 380
Query: 484 -VNSDSVQEAARETDGYFI-KSGIVTIIKDALI 514
V+ + + + + GIV + K +
Sbjct: 381 GVD------LEEDRRRFTVSEGGIVVVPKGQRV 407
|
Length = 407 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 352 bits (906), Expect = e-117
Identities = 153/447 (34%), Positives = 241/447 (53%), Gaps = 63/447 (14%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
R L +IL GG G+RL LT KRAKPAV G +R+ID +SNC+NS I +I VLTQ+ +
Sbjct: 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKA 73
Query: 148 ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE 207
SL RH+ R + S E FV++L AQQ + NW++GTADAV Q L + ++
Sbjct: 74 HSLIRHIQRGW-SFFREELGE-FVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKY 131
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
++LAGDH+Y+MDY R + H E+ AD TVA L + + A+AFG+M +DE RI F EK
Sbjct: 132 VVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEK 191
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD--KFPGAN-DFG 324
P + G D +++ +ASMGIYV + D + LL + + P ++ DFG
Sbjct: 192 PANP--------PAMPG-DPDKS-----LASMGIYVFNADYLYELLEEDAEDPNSSHDFG 237
Query: 325 SEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFSF 373
++IP G +V A+ + + YW D+GT++A++ ANL + P+
Sbjct: 238 KDIIPKIVEEG-KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLA-SVTPELDL 295
Query: 374 YDRSAPIYTQPRYLPPSK-MLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEG 427
YDR+ PI+T LPP+K + D +S++ GC+I + SV+ R ++
Sbjct: 296 YDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSF 355
Query: 428 AIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD 487
+ +ED++L+ D + +G++ ++R +ID+ I + + I D
Sbjct: 356 SNVEDSVLL------PDVN-------------VGRSCRLRRCVIDRGCVIPEGMVI-GED 395
Query: 488 SVQEAARETDGYFI-KSGIVTIIKDAL 513
++A R + + GIV + ++ L
Sbjct: 396 PEEDAKR----FRRSEEGIVLVTREML 418
|
Length = 425 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (764), Expect = 7e-97
Identities = 143/405 (35%), Positives = 219/405 (54%), Gaps = 54/405 (13%)
Query: 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 149
+L +IL GG GTRL LTK AKPAVP G YR+ID +SNC NS I + VLTQ+
Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLE 63
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL 209
LN H+ ++ N G V +L E W++GTA A+ Q + ++++ L
Sbjct: 64 LNNHIGIGSPWDLDR-INGG-VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVL 121
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAAL--PMDEKRATAFGLMKIDEEGRIIEFSEK 267
+L+GDH+Y+MDY++ + H+E +AD+T+A + P +E A+ FG+M DE RI+EF EK
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE--ASRFGIMNTDENMRIVEFEEK 179
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV----ISKDVMLNLLRDKFPGANDF 323
PK K+ ASMGIY+ K+ ++ ++ ++DF
Sbjct: 180 PK--NPKSNL-------------------ASMGIYIFNWKRLKEYLIEDEKNPNS-SHDF 217
Query: 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQ 383
G VIP G ++ AY + GYW+D+GTIE+ + AN+ + +P + +DR+ IY+
Sbjct: 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELL-RPENPLNLFDRNWRIYSV 276
Query: 384 PRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYE 442
LPP + +A V +S++ EGCV+ + HSV+ + EG++++D+++M
Sbjct: 277 NPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGSVVKDSVIM------ 329
Query: 443 TDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD 487
A IG+N I+RAII +NA IGD V I
Sbjct: 330 PGAK-------------IGENVVIERAIIGENAVIGDGVIIGGGK 361
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 2e-86
Identities = 88/280 (31%), Positives = 126/280 (45%), Gaps = 39/280 (13%)
Query: 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK-IYVLTQFNSAS 149
IIL GG+GTRL+PLT+ AKP VP+ Y +I +S +N+ I + I + TQ +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFL 209
+ L ++V A Q GTA AV + + L
Sbjct: 61 VAEQLGDGSKFG---------LQVTYALQPEPR-----GTAPAVALAADFLGDDDPELVL 106
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
VL GDH+YRMD+E +Q R AD TV + + T +G+++ DE GR+I F EKP
Sbjct: 107 VLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPD 166
Query: 270 GEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--NDFGSEV 327
+ ASMGIY + V L L + A D ++
Sbjct: 167 LPKA--------------------SNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDA 206
Query: 328 IPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365
IP A G A+L+ G YW D+GT ++ + ANL +
Sbjct: 207 IPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLT 246
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 4e-79
Identities = 95/260 (36%), Positives = 128/260 (49%), Gaps = 61/260 (23%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IIL GG GTRL PLTKKRAKPAVP G YRLID P+SN +NS I + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
HL ++ G + +L QQ +W++GTADA+ Q L E + L+L
Sbjct: 61 DHLGSGKEWDLDRKN--GGLFILPPQQRK-GGDWYRGTADAIYQNLDYIERSDPEYVLIL 117
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+GDH+Y MDY + H E+
Sbjct: 118 SGDHIYNMDYREMLDFHIES---------------------------------------- 137
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR-DKFPGANDFGSEVIPG 330
D T++ Y ASMGIY+ SKD+++ LL D G++DFG ++IP
Sbjct: 138 -----GADITVV-----------YKASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181
Query: 331 ATSIGMRVQAYLYDGYWEDI 350
+++ AY ++GYW DI
Sbjct: 182 MLK-KLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-42
Identities = 107/440 (24%), Positives = 172/440 (39%), Gaps = 97/440 (22%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG GTRL PLT R KP +P+ LI+ + + + +I ++
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIA-GKPLIEYVLEALAAAGVEEIVLVV-------- 54
Query: 152 RHLSRAYASNMGGYKNEGFVE-VLAAQQSPENPNWFQ-----GTADAVRQYLWLFEEHNV 205
GY E E + + GTA A++ L +
Sbjct: 55 ------------GYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNAL---DLLGG 99
Query: 206 LEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEF 264
+FLVL GD L +D ++ H++ A T+A + + FG+++ D+ GR++EF
Sbjct: 100 DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSE--FGVVETDDGDGRVVEF 157
Query: 265 SEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
EKP + + + GIY+ +V + DF
Sbjct: 158 REKPG-------------------PEEPPSNLINAGIYIFDPEV---FDYIEKGERFDFE 195
Query: 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQ- 383
E++P + G V Y+++GYW DIGT E AN D +P+
Sbjct: 196 EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEAN--------ELLLRGDGKSPLGPIE 247
Query: 384 -PRYLPPSKMLDADVTDSVIGEGCVI-KNCKIH-HSVVGLRSCISEGAIIEDTLLMGADY 440
P + S + V VIG G I I ++V+G I G I+++++M
Sbjct: 248 EPVVIIRSAYIIGPV---VIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIM---- 300
Query: 441 YETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYF 500
V IG S+I +II +N +IG ++ I D V E
Sbjct: 301 ------------DNVV---IGHGSYIGDSIIGENCKIGASLII--GDVVIGINSE----- 338
Query: 501 IKSGIVTIIKDALIPSGTII 520
I G+V + +++ SG I
Sbjct: 339 ILPGVV-VGPGSVVESGEIE 357
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-38
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 45/261 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G GTRL PLT R KP +P+ A +++ + + I +I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPI-AGKPILEYIIERLARAGIDEIILVVGYLGEQIE 59
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQ-YLWLFEEHNVLEFLV 210
+ N +V Q+ P GTA AVR +L ++ FLV
Sbjct: 60 EYFGDGSKFG----VNIEYVV----QEEPL------GTAGAVRNAEDFLGDDD----FLV 101
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
+ GD L +D ++ HRE AD T+A ++ + +G++++D++GR+ F EKP
Sbjct: 102 VNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDGRVTRFVEKPTL 159
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPG 330
+ +A+ GIY+ ++ L+ + + P D ++ IP
Sbjct: 160 PE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTDAIPL 197
Query: 331 ATSIGMRVQAYLYDGYWEDIG 351
+V Y DGYW DIG
Sbjct: 198 LIE-EGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-33
Identities = 96/416 (23%), Positives = 170/416 (40%), Gaps = 77/416 (18%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 147
+ II + L PLTK R ++P G YRLID P+SN +N+ I +++ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 148 -ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL 206
SL HL ++ ++ FV + + G R + L
Sbjct: 61 RQSLFDHLGSGREWDLHRKRDGLFV----FPYNDRDDLSEGG----KRYF------SQNL 106
Query: 207 EFL---------VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-D 256
EFL VL + +D + ++ H ET DITV + A+ + + D
Sbjct: 107 EFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFD 166
Query: 257 EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316
E G++ + E S+ IY++S D+++ LL +
Sbjct: 167 ESGKVK---------------------SIGQNLNPEEEENISLDIYIVSTDLLIELLYE- 204
Query: 317 FPGANDFG-----SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF 371
G E+I + + AY Y GY +I +++++Y AN+ +
Sbjct: 205 ---CIQRGKLTSLEELIRENL-KELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQS 260
Query: 372 SFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAII 430
FY PIYT+ + PP+ + + V +S++ GC+I K+ +S++ + + A+I
Sbjct: 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDALI 319
Query: 431 EDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486
++ ++M IG+ +H++ IIDK+ I NVKI +
Sbjct: 320 KNCIIMQRTV-------------------IGEGAHLENVIIDKDVVIEPNVKIAGT 356
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-32
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 388 PPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADR 447
PP +V +S++ EGC+I + +SV+ + G+++ED+++M
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52
Query: 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 507
GIG+N+ I+RAIIDKN I D V I A Y + GIV
Sbjct: 53 -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVV 97
Query: 508 IIKDALI 514
+ K +I
Sbjct: 98 VGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 66/273 (24%), Positives = 105/273 (38%), Gaps = 58/273 (21%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL GG GTRL + K KP P+ A ++ + IS+I +
Sbjct: 2 VILAGGLGTRLRSVVKDLPKPLAPV-AGRPFLEYLLEYLARQGISRIVLSV--------- 51
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ------GTADAVRQYLWLFEEHNVL 206
GY E E ++ GT A++ L E
Sbjct: 52 -----------GYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQ-- 98
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
FLVL GD + +D + A R + AD T+A + + A+ +G + +D +GR+I F E
Sbjct: 99 -FLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE 155
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326
K G I G+Y++ K+++ + D F ++
Sbjct: 156 KGPGA--------------------APGLING-GVYLLRKEILAEIPADAF----SLEAD 190
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359
V+P G R+ + DGY+ DIG E + A
Sbjct: 191 VLPALVKRG-RLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 57/272 (20%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN- 151
+I+ GG GTRL PLT+ KP + +G +++ + + Y+ S+N
Sbjct: 2 VIMAGGKGTRLRPLTENTPKPMLKVG-GKPILETIIDRFIAQGFRNFYI-------SVNY 53
Query: 152 -RHLSRAYASNMG--GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
+ Y + G E + P GTA A L L E F
Sbjct: 54 LAEMIEDYFGDGSKFGVNISYVRE--------DKP---LGTAGA----LSLLPEKPTDPF 98
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
LV+ GD L ++YE + H+E +AD TV + + +G+++ + GRI EKP
Sbjct: 99 LVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQ--VPYGVVETE-GGRITSIEEKP 155
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328
++ + GIYV+ +V+ + +++F D ++I
Sbjct: 156 -----------------------THSFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLI 192
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
G +V + YW DIG E + AN
Sbjct: 193 ----KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
G+IL GG+GTRL PLT+ K +P+ + +I P+ + + I I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPV-YDKPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLV 210
+ L +G + G A Q P+ G A AV + E+ +F++
Sbjct: 62 KEL-------LGDGSDFGVDITYAVQPEPD------GLAHAV----LIAEDFVGDDDFVL 104
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
GD++++ ++ E + T+ +D+ + +G+++ DE+G++I EKPK
Sbjct: 105 YLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDGKVIGLEEKPK 161
|
Length = 286 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-15
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 401 VIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 459
+IGE VI N I +SV+G I +G I +++LM
Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVT------------------- 41
Query: 460 IGKNSHIKRAIIDKNARIGDNVKIVNS 486
IG NS I +II NA IG+NV++VN
Sbjct: 42 IGANSVIVDSIIGDNAVIGENVRVVNL 68
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 47/274 (17%)
Query: 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 149
+ G+IL GG GTRL PLT R K +P+ A +I + + + I I ++
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV-AGKPIIQYAIEDLREAGIEDIGIVVGPTGEE 59
Query: 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV-RQYLWLFEEHNVLEF 208
+ L + ++ Q+ P G A AV +L +E F
Sbjct: 60 IKEALGDGSRFGV----RITYIL----QEEP------LGLAHAVLAARDFLGDE----PF 101
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
+V GD+L + ++ E DAD ++ +++ R FG+ +D +GRI+ EKP
Sbjct: 102 VVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPR--RFGVAVVD-DGRIVRLVEKP 158
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM--LNLLRDKFPGANDFGSE 326
K + +A +G+Y + + ++ L+ + G + ++
Sbjct: 159 K---------------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TD 196
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
I G RV + G+W+D GT E AN
Sbjct: 197 AIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 86/392 (21%), Positives = 160/392 (40%), Gaps = 68/392 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G GTRL PLT R K +P+ AN ++ + + + I+ I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPV-ANKPILQYAIEDLAEAGITDIGIV-------VG 53
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV-RQYLWLFEEHNVLEFLV 210
+G + G Q P G A AV +L ++ +F+V
Sbjct: 54 PVTGEEIKEIVGEGERFGAKITYIVQGEP------LGLAHAVYTARDFLGDD----DFVV 103
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
GD+L + RF+++ E D D + + + TAFG+ +++ RI++ EKPK
Sbjct: 104 YLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLEDGKRILKLVEKPK- 160
Query: 271 EQLKAMKVDTTILGLDDERAKEMPY-IASMGIYVISKDVMLNLLRDKFPGA-NDFG-SEV 327
E P +A +G+Y+ + ++ +++ P + ++
Sbjct: 161 ---------------------EPPSNLAVVGLYMF-RPLIFEAIKNIKPSWRGELEITDA 198
Query: 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYL 387
I G +V G+W+D G E +AN I + + D + I +
Sbjct: 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVG 258
Query: 388 PPSKMLDADVTD-SVIGEGCVIKNCKI-HHSVVGLRSCISEGAIIEDTLLMGADYYETDA 445
+K++++ + +VIGE C+I+N I ++ +G I A +E ++++
Sbjct: 259 EGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVI-RDAEVEHSIVL--------- 308
Query: 446 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477
SV G+ I ++I K RI
Sbjct: 309 -------DESVIEGVQA--RIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 95/401 (23%), Positives = 156/401 (38%), Gaps = 109/401 (27%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+ PLT+ R KP +P+ A L++ + ++ I + + +
Sbjct: 4 VILAAGKGTRMRPLTETRPKPMLPV-AGKPLLEHIIEALRDAGIDDFVFVVGYGKEKVRE 62
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLA 212
+ G + G V + Q + GTADA+ +E+ EFLVL
Sbjct: 63 YF---------GDGSRGGVPIEYVVQEEQ-----LGTADALGSA----KEYVDDEFLVLN 104
Query: 213 GDHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
GD L ER I+A A + V + +G+++ D GR+ EKP
Sbjct: 105 GDVLLDSDLLERLIRAEAPAIAVVEV-------DDPSDYGVVETD-GGRVTGIVEKP--- 153
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-SEVIPG 330
++ + + + GIY+ S ++ L + K ++ ++ +
Sbjct: 154 --------------ENPPSN----LINAGIYLFSPEIFELLEKTKLSPRGEYELTDALQL 195
Query: 331 ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 390
G +V+A DG+W D+G +P +D L +
Sbjct: 196 LIDEG-KVKAVELDGFWLDVG--------------RP------WD----------LLDAN 224
Query: 391 KMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 450
+ L ++ + G V +N I VV I EGA+I G Y E
Sbjct: 225 EALLDNLEPRIEGT--VEENVTIKGPVV-----IGEGAVIRS----GT-YIE-------- 264
Query: 451 AAKGSVPIG----IGKNSHIKRA-IIDKNARIGDNVKIVNS 486
G V IG IG N++I+ +I N IG+ V+I NS
Sbjct: 265 ---GPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNS 302
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 62/274 (22%), Positives = 91/274 (33%), Gaps = 70/274 (25%)
Query: 94 ILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRH 153
IL G GTR+ PLT R KP VP+ A LID + + I +I V N H
Sbjct: 4 ILAAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAAGIRRIVV---------NTH 53
Query: 154 LSRAYASNMGGYKNEGFVEVLAAQQ-------SPENPNWFQGTADAVRQYLWLFEEHNVL 206
+ + L + S E T +++ L L +
Sbjct: 54 -----------HLADQIEAHLGDSRFGLRITISDEPDE-LLETGGGIKKALPLLGDEP-- 99
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPM----DEKRATAFGLMKIDEEGRII 262
FLV+ GD L+ D + H D + LP+ F L D +GR+
Sbjct: 100 -FLVVNGDILWDGDLAPLLLLHAW-RMDALLLLLPLVRNPGHNGVGDFSL---DADGRLR 154
Query: 263 EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322
P+ + GI ++S ++ + KF N
Sbjct: 155 RGGGGAVA-----------------------PFTFT-GIQILSPELFAGIPPGKFS-LNP 189
Query: 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF 356
I R+ +YDG W D+GT E
Sbjct: 190 LWDRAIAAG-----RLFGLVYDGLWFDVGTPERL 218
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 35/207 (16%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG G+RLYPLT K +P+ N +I P+ + + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVA-NKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
R++ N K + + + GTAD++R ++ +FLVL
Sbjct: 62 STYLRSFPLN---LKQKLDEVTIVLDED-------MGTADSLRHIRKKIKK----DFLVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ D + + + HR DA +TV + S + KG
Sbjct: 108 SCDLITDLPLIELVDLHRSHDASLTVL---LYPPP-----------------VSSEQKGG 147
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIAS 298
+ K+ K D + DE+ + + +I S
Sbjct: 148 KGKSKKADERDVIGLDEKTQRLLFITS 174
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-09
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYPLTK +K +P+ + +I P+S + + I +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPVY-DKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE----HNVLE 207
L + +G + G A Q P G A A + EE V
Sbjct: 56 EDLPL-FKELLGDGSDLGIRITYAVQPKPG------GLAQA----FIIGEEFIGDDPVC- 103
Query: 208 FLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
L+L GD+++ +Q TV +++ +G+++ DE GR++ E
Sbjct: 104 -LIL-GDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENGRVLSIEE 159
Query: 267 KPK 269
KPK
Sbjct: 160 KPK 162
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-09
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG 459
IGEG I +V+ I + I ++GA P
Sbjct: 1 VFIGEGVKIH----PKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------EKNPTI 46
Query: 460 IGKNSHIK-RAIIDKNARIGDNVKI 483
IG N I A+I +IGDN I
Sbjct: 47 IGDNVEIGANAVIHGGVKIGDNAVI 71
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 50/268 (18%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL GG GTRL PLT KP V N +I+ + + + +I + + +
Sbjct: 4 LILVGGYGTRLRPLTLTVPKPLVEF-CNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVP 62
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH---NVLEFL 209
L + Y +G +++ + ++ GTA + L + + F
Sbjct: 63 FL-KEYEKKLG-------IKITFSIETEP-----LGTAGPLA----LARDLLGDDDEPFF 105
Query: 210 VLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFSEKP 268
VL D + + H++ A+ T+ +++ + +G++ DE GRI F EKP
Sbjct: 106 VLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTGRIERFVEKP 163
Query: 269 KGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328
K K++ GIY+++ V L+ + + E+
Sbjct: 164 K--VFVGNKINA-------------------GIYILNPSV-LDRIPLRP---TSIEKEIF 198
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAF 356
P S G ++ AY G+W DIG + F
Sbjct: 199 PKMASEG-QLYAYELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
++L G G+R PLT K +P+ AN LID + + + +++V+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPV-ANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
HL ++ S+ K V +S G A +R L FL+L
Sbjct: 62 EHLLKSKWSS-LSSKMIVDVITSDLCES-------AGDALRLRDIRGLIRSD----FLLL 109
Query: 212 AGDHLYRMDY----ERFIQAHRETDADITV 237
+ D + + E + + A +TV
Sbjct: 110 SCDLVSNIPLSELLEERRKKDKNAIATLTV 139
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 116/517 (22%), Positives = 173/517 (33%), Gaps = 171/517 (33%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
S+ +IL G GTR+ K P V P+ A +++ + I V+
Sbjct: 1 MSLSAVILAAGKGTRM-----KSDLPKVLHPV-AGKPMLEHVIDAARALGPDDIVVVV-- 52
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWF-----QGTADAVRQYLWLF 200
G+ E +V A ++ + GT AV Q L
Sbjct: 53 ------------------GHGAE---QVREALAERDDVEFVLQEEQLGTGHAVLQALPAL 91
Query: 201 EEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 258
+ + LVL GD L + E + AH A TV L + T +G + D
Sbjct: 92 ADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATV--LTAELDDPTGYGRIVRDGN 149
Query: 259 G---RIIEFSEKPKGEQLKAMK-VDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314
G I+E EK E+ K +K ++T GIY +L L
Sbjct: 150 GEVTAIVE--EKDASEEEKQIKEINT-------------------GIYAFDGAALLRAL- 187
Query: 315 DKFPGANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL- 361
K N G ++VI A + G +V+A D E +G E +
Sbjct: 188 PKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247
Query: 362 ------GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT----------------- 398
G+T + D P + + DV
Sbjct: 248 EKLMLAGVT---LID-----------------PATTYIRGDVEIGRDVVIEPNVILEGNT 287
Query: 399 ----DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 454
+ VIG G VIK+ I + V + EG+ + + +G + A R G
Sbjct: 288 VIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGP-F----ARLR----PG 338
Query: 455 SVPIGIGKNSHI------KRAIIDK-----------NARIGDNVKI------VNSDSVQE 491
+V +G + HI K+A I K +A IG+NV I N D +
Sbjct: 339 AV---LGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNK 395
Query: 492 AARET---DGYFIKSGI-----VTIIKDALIPSGTII 520
+T D FI S VTI A I +G+ I
Sbjct: 396 --FKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430
|
Length = 460 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 62/279 (22%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
IIL G G+RL PLT+ R K + + L++ + + I I ++T
Sbjct: 2 IILAAGRGSRLRPLTEDRPKCLLEIN-GKPLLERQIETLKEAGIDDIVIVT--------- 51
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPE---NPNWFQ-GTADAVRQY-LWLFEEHNVLE 207
GYK E E+L + + NP++ + Y L+L + +
Sbjct: 52 -----------GYKKEQIEELLKKYPNIKFVYNPDYAETNNI-----YSLYLARDFLDED 95
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
FL+L GD ++ ++ + AD + K E + K
Sbjct: 96 FLLLEGDVVFD---PSILERLLSSPADNAILVDK------------KTKEW---EDEYVK 137
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK---DVMLNLLR--DKFPGAND 322
+ + + + L++ + + +GI S D + L + N
Sbjct: 138 DLDDAGVLLGIISKAKNLEEIQGE------YVGISKFSPEDADRLAEALEELIEAGRVNL 191
Query: 323 FGSEVIPG-ATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
+ + + + G++V+ DG+W +I +E A
Sbjct: 192 YYEDALQRLISEEGVKVKDI-SDGFWYEIDDLEDLERAE 229
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 399 DSVIGEGCVIK-NCKIHH-SVVGLRSCISEGAIIEDTLLMGAD--YYETDADRRF-LAAK 453
VIG+ CVI N I+ ++G R I GA+I G+D + D +
Sbjct: 37 GVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI------GSDGFGFAPDGGGWVKIPQL 90
Query: 454 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 485
G V IG IG N+ I R + + IGD KI N
Sbjct: 91 GGVIIGDDVEIGANTTIDRGALG-DTVIGDGTKIDN 125
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 399 DSVIGEGCVI-KNCKI-HHSVVGLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 453
+ IG+G VI N I H+ V+G I GA+I GAD Y T +
Sbjct: 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI------GADGFGYAGTAIGWVKIPQI 200
Query: 454 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVNS 486
G V IG IG N+ I R +D + IG+ VKI N
Sbjct: 201 GRVIIGDDVEIGANTTIDRGALD-DTVIGEGVKIDNL 236
|
Length = 338 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 107/421 (25%), Positives = 160/421 (38%), Gaps = 99/421 (23%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL 150
+IL G GTR+ K P V PL A +++ + KI+V+ + +
Sbjct: 4 VILAAGKGTRM-----KSDLPKVLHPL-AGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 151 NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLV 210
+ L N VL A+Q GT AV Q L + + LV
Sbjct: 58 RKAL-----------ANRDVNWVLQAEQ--------LGTGHAVLQALPFLPDDGDV--LV 96
Query: 211 LAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RIIEFS 265
L GD L + ER ++AHR+ + A LP T +G + + +G I+E
Sbjct: 97 LYGDVPLISAETLERLLEAHRQNGITLLTAKLP----DPTGYGRIIRENDGKVTAIVE-- 150
Query: 266 EKPKGEQLKAMK-VDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
+K + KA+K ++T G+YV + L K N G
Sbjct: 151 DKDANAEQKAIKEINT-------------------GVYVFDGAALKRWLP-KLSNNNAQG 190
Query: 325 ----SEVIPGATSIGMRVQAYLYDGYWEDIGT--------IEAFYNANL-------GITK 365
++VI A + G V+A D E +G +E + G+T
Sbjct: 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL 250
Query: 366 KPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT---DSVIGEGCVIKNCKIHHSVVGLRS 422
+ P F R + + P+ +L+ V D VIG GCVIKN I +VV
Sbjct: 251 R-DPA-RFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAY 308
Query: 423 CISEGAIIEDTLLMGADYYETDADRRFLAAK-GSVPIGIGKNSHIKRAIIDKNARIGDNV 481
+ EG+ I + +G F + GSV +G HI + KNARIG
Sbjct: 309 SVLEGSEIGEGCDVGP----------FARLRPGSV---LGAGVHIGNFVETKNARIGKGS 355
Query: 482 K 482
K
Sbjct: 356 K 356
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYP+T+ +K +P+ + +I P+S + + I I +++
Sbjct: 2 GIILAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFL 209
+ L +G G A Q SP D + Q + E+ L
Sbjct: 61 QQL-------LGDGSQWGVNLSYAVQPSP----------DGLAQAFIIGEDFIGGDPSAL 103
Query: 210 VLAGDHLYRMDYERFIQ--AHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
VL + Y D ++ A RE+ A + A D +R +G+++ D GR I EK
Sbjct: 104 VLGDNIFYGHDLSDLLKRAAARESGATV-FAYQVSDPER---YGVVEFDSNGRAISIEEK 159
Query: 268 PK 269
P
Sbjct: 160 PA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-05
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 48/168 (28%)
Query: 387 LPPSKMLDADVT---DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 443
+ P +L+ D VIG CVIK+ I VV S + EGA+I + +G +
Sbjct: 24 IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGP-F--- 79
Query: 444 DADRRFLAAKGSVPIGIGKNSHI------KRAIIDKN-----------ARIGDNVKI--- 483
A R G+V +G+ HI K++ I + A IG+ V I
Sbjct: 80 -AHLRP----GTV---LGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAG 131
Query: 484 ---VNSDSVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 520
N D V + T D FI S VTI A I +G+ I
Sbjct: 132 TITCNYDGVNK--HRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRLYP+T +K +P+ + +I P+S + + I I +++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE---HNVLEF 208
+ L +G G Q SP D + Q + EE +
Sbjct: 65 QQL-------LGDGSQWGLNLQYKVQPSP----------DGLAQAFIIGEEFIGGDDCA- 106
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKP 268
LVL + Y D + ++A ++ TV A +++ +G+++ D+ G I EKP
Sbjct: 107 LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPE--RYGVVEFDQNGTAISLEEKP 164
|
Length = 292 |
| >gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 44/207 (21%), Positives = 73/207 (35%), Gaps = 35/207 (16%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL G G+RL P K V +G +I + N + I++ V+T
Sbjct: 6 AVILAAGFGSRLGP---DIPKALVEVG-GREIIYRTIENLAKAGITEFVVVT----NGYR 57
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
L + K F + E N L L +++ F+++
Sbjct: 58 ADLVEEF------LKKYPFNAKIVINSDYEKTNTGYS--------LLLAKDYMDGRFILV 103
Query: 212 AGDHLYRMD-YERFIQAHRETD-ADITVAALPMDEKRATAFGLMKI-DEEGRIIEFS--- 265
DH+Y ER ++A E D + ++E K+ DE GRI+E
Sbjct: 104 MSDHVYEPSILERLLEAPGEGLIVDRRPRYVGVEEA-------TKVKDEGGRIVEIGKDL 156
Query: 266 EKPKGEQLKAMKVDTTILGLDDERAKE 292
+ GE + + +I E E
Sbjct: 157 TEYDGEDIGIFILSDSIFEDTYELLVE 183
|
Length = 239 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 460 IGKNSHIKRAIIDKNARIGDNVKIVNS----DSVQEAARETDGYFIKSGIVTIIKDALIP 515
IG+ + IK ++I +N +IG NV I NS D E + G I K IP
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-AVIGKGCTIP 66
Query: 516 SGTII 520
G++I
Sbjct: 67 PGSLI 71
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 55/281 (19%)
Query: 92 GIILGGGA--GTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSA 148
+IL GG GTR PL+ KP P+ A +I + C ++ ++ ++ + +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV-AGKPMIHHHIEACAKVPDLKEVLLIGFYPES 59
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
+ +S A + E V + Q+ P GTA + + N F
Sbjct: 60 VFSDFISDA--------QQEFNVPIRYLQE--YKP---LGTAGGLYHFRDQILAGNPSAF 106
Query: 209 LVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFSEK 267
VL D + ++ H++ A T+ ++A+ +G + D G ++ + EK
Sbjct: 107 FVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEK 166
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM------LNLLRDKFPGAN 321
P+ V I + G+Y+ S ++ + + +
Sbjct: 167 PET------FVSDLI---------------NCGVYLFSPEIFDTIKKAFQSRQQEAQLGD 205
Query: 322 DFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGT 352
D E + V Y D +W I T
Sbjct: 206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKT 246
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 56/292 (19%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+I G GTR P TK K +P+ + +I V + + I I ++T ++
Sbjct: 4 VIPAAGLGTRFLPATKAIPKEMLPIV-DKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIED 62
Query: 153 HLSRAYA-SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL----- 206
H R+Y + +G ++L + + VRQ L H VL
Sbjct: 63 HFDRSYELEET--LEKKGKTDLLEEVRIISDL----ANIHYVRQKEPLGLGHAVLCAKPF 116
Query: 207 ----EFLVLAGDHLYRMDYE----RFIQAHRETDADITVAALPMDEKRATAFGLMKIDE- 257
F VL GD L E + I+A+ +T A + +A + + + +G++K ++
Sbjct: 117 IGDEPFAVLLGDDLI-DSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKI 174
Query: 258 EGRIIE---FSEKPKGEQLKAMKVDTTILGLDDERAKEMPY-IASMGIYVISKDVMLNLL 313
+G + + EKPK +E P +A +G YV++ D+ ++L
Sbjct: 175 DGDVFKVKGLVEKPK--------------------PEEAPSNLAIVGRYVLTPDIF-DIL 213
Query: 314 RDKFPGANDFGSEV-IPGATSIGMR---VQAYLYDGYWEDIGTIEAFYNANL 361
+ PG G E+ + A + + V AY+++G D G + A +
Sbjct: 214 ENTKPGK---GGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATV 262
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251
VR+YL + F++ GD + ++ I+ HR TV A+ FG
Sbjct: 110 RVRRYL-----GDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPGRFG 160
Query: 252 LMKIDEEGRIIEFSEKPKGE 271
+ +D++G++ F+EKP+G+
Sbjct: 161 ELDLDDDGQVTSFTEKPQGD 180
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 24/86 (27%)
Query: 398 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 457
+ IGEG IKN SV+G I + +I+++ Y D
Sbjct: 4 RGTSIGEGTTIKN-----SVIGRNCKIGKNVVIDNS------YIWDDVT----------- 41
Query: 458 IGIGKNSHIKRAIIDKNARIGDNVKI 483
I I +I+ A IG I
Sbjct: 42 --IEDGCTIHHSIVADGAVIGKGCTI 65
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 397 VTDSVIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 455
+ +SVIG C I KN I +S + I +G I +++ A G+
Sbjct: 14 IKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIV----------------ADGA 57
Query: 456 VPIGIGKNSHIK-RAIIDKNARIGD 479
V IGK I ++I IGD
Sbjct: 58 V---IGKGCTIPPGSLISFGVVIGD 79
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 63/233 (27%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+ K PL A +++ + +I V+
Sbjct: 2 VILAAGKGTRMK---SDLPKVLHPL-AGKPMLEHVLDAARALGPDRIVVVV--------- 48
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWF-----QGTADAVRQYLWLFEEHNVLE 207
G+ E + LA N + GT AV+Q L ++ +
Sbjct: 49 -----------GHGAEQVKKALAN----PNVEFVLQEEQLGTGHAVKQALPALKDFEG-D 92
Query: 208 FLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RII 262
LVL GD L + +R ++AHRE AD+TV ++ T +G + D G RI+
Sbjct: 93 VLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTGYGRIIRDGNGKVLRIV 150
Query: 263 EFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLR 314
E EK D T ++E+A +E + GIY + + L
Sbjct: 151 E--EK-----------DAT----EEEKAIRE----VNAGIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 33/151 (21%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
G+IL GG +R+ K +PLG L++ + L ++ V N
Sbjct: 1 GVILAGGRSSRM-----GGDKALLPLG-GKPLLERVLDR-LRPAGDEVVV-------VTN 46
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE-FLV 210
R A + +G V V+ +P+ QG + + LV
Sbjct: 47 RPEIAAALAGLG-------VPVV------PDPDPGQGPLAGLAA---GLRAAPDADAVLV 90
Query: 211 LAGD--HLYRMDYERFIQAHRETDADITVAA 239
LA D L R + A + ADI V
Sbjct: 91 LACDMPFLTPDLLRRLLAALEASGADIAVPV 121
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 399 DSVIGEGCVI-KNCKIHHSVV-GLRSCISEGAIIEDTLLMGAD--YYETDADRRFLAAK- 453
D VIG+G I N I+ V G I GA+I G+D Y A+ +
Sbjct: 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI------GSDGFGYAHTANGGHVKIPQ 192
Query: 454 -GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 485
G V I IG N+ I R D + IG+ KI N
Sbjct: 193 IGRVIIEDDVEIGANTTIDRGAFD-DTIIGEGTKIDN 228
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.98 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.98 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.97 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.96 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.96 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.96 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.93 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.89 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.88 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.86 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.85 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.77 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.76 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.68 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.67 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.67 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.65 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.65 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.58 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.58 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.58 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.56 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.55 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.54 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.52 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.52 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.5 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.48 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.48 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.48 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.47 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.47 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.46 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.46 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.43 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.43 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.43 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.42 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.41 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.4 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.39 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.38 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.37 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.36 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.36 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.34 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.34 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.34 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.34 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.34 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.33 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.32 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.32 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.3 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.29 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.29 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.29 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.28 | |
| PLN02296 | 269 | carbonate dehydratase | 99.28 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.27 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.27 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.26 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.25 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.25 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.25 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.23 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.23 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.22 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.22 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.22 | |
| PLN02472 | 246 | uncharacterized protein | 99.21 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.21 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.16 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.15 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.15 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.14 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.14 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.12 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.12 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.11 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.11 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.1 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.1 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.1 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.1 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.08 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.08 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.07 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.07 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.07 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.06 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.05 | |
| PLN02296 | 269 | carbonate dehydratase | 99.04 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.03 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.03 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.03 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.02 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.02 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.99 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.99 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.98 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.98 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.97 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.97 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.96 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.95 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.95 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.95 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.95 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.94 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.94 | |
| PLN02472 | 246 | uncharacterized protein | 98.94 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.94 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.93 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.92 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.91 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.91 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.9 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.89 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.88 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.88 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.88 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.87 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.86 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.82 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.79 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.74 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.73 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.73 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.7 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.68 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.67 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.67 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.66 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.65 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.65 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.63 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.63 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.6 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.56 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.54 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.53 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.52 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.51 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.5 | |
| PLN02357 | 360 | serine acetyltransferase | 98.5 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.49 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.49 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.48 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.48 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.48 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.46 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.46 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.46 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.46 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.44 | |
| PLN02739 | 355 | serine acetyltransferase | 98.43 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.42 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.42 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.41 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.39 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.39 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.33 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.33 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.33 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.33 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.3 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.29 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.29 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.28 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.27 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.25 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.23 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.23 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.22 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.19 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.18 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.18 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.18 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.17 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.11 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.05 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.03 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.02 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.02 | |
| PLN02357 | 360 | serine acetyltransferase | 98.02 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.01 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.99 | |
| PLN02739 | 355 | serine acetyltransferase | 97.99 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.95 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.88 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.86 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.76 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.71 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 97.7 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.65 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.61 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.6 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.57 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.57 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.53 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.37 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.32 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.2 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 97.17 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.14 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.06 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.01 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.0 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.96 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.92 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.59 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.27 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.85 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 95.26 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.17 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 93.13 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 91.35 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 91.33 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 88.36 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 87.61 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 86.66 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 86.31 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 84.0 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 83.89 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 82.21 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 80.21 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-70 Score=544.61 Aligned_cols=386 Identities=42% Similarity=0.757 Sum_probs=351.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++++.|+|||||.|+||.|||+.++||.+|++|+|+|||++|+||.++||++|.|+++|+..+|.+||+.+++|.++ .
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~--~ 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLD--R 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccc--c
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999654 3
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+++.++++++...++.|+.||++++++-++++++...+.+|+++||++|++|+.++++.|.++++++|+++.+++.++
T Consensus 81 ~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e 160 (393)
T COG0448 81 KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE 160 (393)
T ss_pred ccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh
Confidence 34668899888765667799999999999999999888899999999999999999999999999999999999999999
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++... +..||
T Consensus 161 as~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Df 221 (393)
T COG0448 161 ASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDF 221 (393)
T ss_pred hhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCccccc
Confidence 999999999999999999999997211 12279999999999999999986543 45789
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEE
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 402 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~I 402 (520)
+.++||.+++++ +++||+++|||.||+|+++|++||+.++... |.+.+++++++|++.....||+++. ++.+.+|.|
T Consensus 222 gkdiIp~~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv 299 (393)
T COG0448 222 GKDIIPKLLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLV 299 (393)
T ss_pred hHHHHHHHHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-CcccccCCCCceeecCCCCCCceEecCceEeeeee
Confidence 999999999955 5999999999999999999999999999844 7788999999999999999999997 566799999
Q ss_pred CCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcE
Q 010006 403 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 482 (520)
Q Consensus 403 g~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 482 (520)
+.||+|.+ .|.||+|+.+++|+++|.|++|++|++ +.||+||+|++|||++||.|++|++
T Consensus 300 ~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 300 AGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred eCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcE
Confidence 99999999 889999999999999999999999997 6999999999999999999999999
Q ss_pred EecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 483 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 483 i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
|.+.. ++..+.. +.+. +++++|+++++++.+.+
T Consensus 360 i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 360 IGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred EcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 98755 5666655 6666 88899999999987754
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-66 Score=546.88 Aligned_cols=433 Identities=70% Similarity=1.163 Sum_probs=381.0
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||+|+||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+++.|+|+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999988999999999999999999999999999999999986655433333
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC---cceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
...++.++...|...++.|++|++++++++++++++.. .++||+++||++++.|+.+++++|+++++++|+++.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 33446666655543344578999999999998876532 579999999999999999999999999999999998887
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
.+++..||++.+|++++|.+|.|||..+....+++|+++|.+++.......+++++|+|+|++++|..++++.++...+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 66678999999998899999999998766667889999988776544344679999999999999987887666555578
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEEC
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 403 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig 403 (520)
..|+++.+++++.++++|.+++||.||+++++|+++++.++... +...+++++.++++.....||+.+.++.+.+++|+
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~ 319 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIIS 319 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhhccCCCCcccccCCCCCCcEecCCeEEEeEEc
Confidence 89999999987789999999999999999999999999998765 54566777889999888889999988888889999
Q ss_pred CCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 404 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 404 ~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
++|.|++|.|++|+||++|.||++|+|.++++|+.++|+..+........|++++.||++|+|++++|++++.||++|+|
T Consensus 320 ~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 320 HGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI 399 (436)
T ss_pred CCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence 99999988899999999999999999999999999999887777766667776678999999999999999999999999
Q ss_pred ecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 484 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+++++.+..++|++|+|++|+|+||+++.|++||+|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 400 INKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred ecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 9999999999999999999998899999999999986
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=505.45 Aligned_cols=364 Identities=42% Similarity=0.692 Sum_probs=322.1
Q ss_pred cccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCC
Q 010006 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (520)
Q Consensus 84 ~~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (520)
|.+ +.|+||||.||.||||+|||.++||||+|++ +||||+|++++|.++||++|++.++|++++++.|+.+.|..++
T Consensus 5 ~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~l- 81 (371)
T KOG1322|consen 5 PAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKEL- 81 (371)
T ss_pred ccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhcc-
Confidence 444 7899999999999999999999999999998 6799999999999999999999999999999999999885443
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+ |+++..+|+ +|.|++|++++.++.+|..++ .+|+||+||++++++|++|+++|+++++++|+++++++
T Consensus 82 ---g---Vei~~s~et--eplgtaGpl~laR~~L~~~~~---~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 82 ---G---VEILASTET--EPLGTAGPLALARDFLWVFED---APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred ---c---eEEEEEecc--CCCcccchHHHHHHHhhhcCC---CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 2 899998884 489999999999999987764 48999999999999999999999999999999999987
Q ss_pred cccCcceEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
+ ++.||+|..|+ +|+|.+|.|||+... +.-.++|+|+|++++|++++ .+|+.
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~ptS-- 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPTS-- 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hcccc--
Confidence 5 89999999998 799999999999443 23567999999999999887 34433
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceE-
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSV- 401 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~- 401 (520)
|+++++|.+++ ++++++|.++|||+|||+|+||+.+ +.||+.+.+.++.++++||+.+.++++.|++
T Consensus 204 iekEifP~~a~-~~~l~a~~l~gfWmDIGqpkdf~~g-----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~ 271 (371)
T KOG1322|consen 204 IEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKDFLTG-----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIA 271 (371)
T ss_pred hhhhhhhhhhh-cCceEEEecCchhhhcCCHHHHHHH-----------HHHHHhhCcccCCccccCCccccccEeecccc
Confidence 89999998887 8999999999999999999999999 4567777889999999999999988887754
Q ss_pred -ECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 -IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 -Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +++||++|+|++++.|++|.+|++|+|+++++.+..+.++.+ .||.++ +|+++++||+|
T Consensus 272 ~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~--~IG~~~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 272 SIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV--PIGIWA-----RIDKNAVLGKN 340 (371)
T ss_pred ccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc--cccCce-----EEecccEeccc
Confidence 555565553 699999999999999999999999999999998888877774 444333 99999999999
Q ss_pred cEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 481 ~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
|+|.|.+.++++ ++..++++++.|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999999886 7899999999999998873
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=518.77 Aligned_cols=429 Identities=66% Similarity=1.129 Sum_probs=368.2
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 568999999999999999999999999999998779999999999999999999999999999999998743221 11
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+++.++...|...++.|++||++++++++.+++....++|||++||++++.|+.++++.|++.++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 22345555555544556677999999999999987544478999999999999999999999999999999988776556
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~d 326 (520)
+..||++.+|++++|..|.|||.......+.+|+++|..++.......+++++|+|+|++++|.+++++. ++..++.++
T Consensus 158 ~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~d 236 (429)
T PRK02862 158 ASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKE 236 (429)
T ss_pred cccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHH
Confidence 7899999999889999999999866556677888888777655555567999999999999998777653 234567789
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCc
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
+|+.+++ +.++++|.+++||.|++|+++|+++|+.++....+....+.+..++++.+.+.||+.+.++.+++++||++|
T Consensus 237 il~~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~ 315 (429)
T PRK02862 237 IIPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGC 315 (429)
T ss_pred HHHHHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCC
Confidence 9999986 789999999999999999999999999988443355566777889999999999999988888999999999
Q ss_pred EEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 407 VIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 407 ~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
.|.++.|.+|+||.+|+||++|.|.+|++|+.++|+.........-.+..++.||++|.|++|+|+++|+||++|++.|+
T Consensus 316 ~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 316 IIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred EECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 99448999999999999999999999999999888876654444445555689999999999999999999999999999
Q ss_pred CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 487 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 487 ~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+.+..+..++++|++|+|+|++++++++||+|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 396 DNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999976
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=462.14 Aligned_cols=375 Identities=38% Similarity=0.670 Sum_probs=313.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||+||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+++...|++....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 57899999999999999999999999999999876899999999999999999999999999999999876556542221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..+.+++.++...++.|++||+++|++++++++....++|||++||++++.++.++++.|++.++++++++...+.++
T Consensus 81 --~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 81 --GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred --CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 224555333332445688999999999999986433468999999999999999999999988888888887665556
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
+..||++.+|++++|.+|.|||..+. .++.++|+|+|++++|.+++++... ...+|
T Consensus 159 ~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDF 217 (380)
T ss_pred ccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhh
Confidence 78899999988899999999986432 2488999999999999777764322 23456
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEE
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVI 402 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~I 402 (520)
.+|+++.+++.+.+++++.++++|.||||+++|+++++.++... +...++++...+++.+.+.+|+.+. ++.|.+++|
T Consensus 218 ~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~I 296 (380)
T PRK05293 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE-NPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLV 296 (380)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC-chhhhcCCCCceecCCcCCCCCEECCCCEEecCEE
Confidence 68999999987789999999999999999999999999888765 4456778888888888888888885 677889999
Q ss_pred CCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcE
Q 010006 403 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 482 (520)
Q Consensus 403 g~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 482 (520)
|++|.|++ .+.+|+||++|+||++|+|++|+++++ +.||+++.|.+|+|+++++||+++.
T Consensus 297 g~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 297 VEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred CCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCE
Confidence 99999985 567999999999999999999999987 5899999999999999999999999
Q ss_pred EecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 483 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 483 i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+... ++++||+++.|+++++|
T Consensus 357 i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 357 IGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 976322 13567777777777765
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=452.20 Aligned_cols=385 Identities=37% Similarity=0.657 Sum_probs=311.4
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
+|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+. |.+..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~--~~~~~- 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQT--WRLSG- 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhC--cCccc-
Confidence 468899999999999999999999999999999877999999999999999999999999999999999854 32211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
....++.... .+...++.|++||+++++++++++.+...++||+++||++++.++.++++.|+++++++|+++...+.+
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~ 157 (407)
T PRK00844 79 LLGNYITPVP-AQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE 157 (407)
T ss_pred cCCCeEEECC-cccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH
Confidence 1112222211 122123457799999999999999653335799999999999999999999999999999888776555
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~ 322 (520)
++..||++.+|++|+|..|.|||....... .....+++++|+|+|++++|.+++++... ...+
T Consensus 158 ~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~ 223 (407)
T PRK00844 158 EASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADEDSSHD 223 (407)
T ss_pred HcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCccccc
Confidence 678899999998899999999987542100 00123589999999999998666664221 3345
Q ss_pred ccccchHhhhhCCceEEEEEe------------cceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCc
Q 010006 323 FGSEVIPGATSIGMRVQAYLY------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~------------~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
+..|+++.++++ .++++|.+ ++||.||+++++|+++|+.++... +...+.++..++++..+..||+
T Consensus 224 ~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (407)
T PRK00844 224 MGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFNLYNREWPIYTSSPNLPPA 301 (407)
T ss_pred chhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-CccccCCCCCcccccCCCCCCc
Confidence 678999999985 58999976 599999999999999999999765 4455667777888887788888
Q ss_pred eeecc-----cccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE
Q 010006 391 KMLDA-----DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH 465 (520)
Q Consensus 391 ~i~~~-----~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 465 (520)
.+.+. .+.+++||++|.|+++.|.+|+||++|+|+++|+|++++++++ +.||++|.
T Consensus 302 ~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~ 362 (407)
T PRK00844 302 KFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAV 362 (407)
T ss_pred eEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCE
Confidence 87532 3578999999999878899999999999999999999999886 58999999
Q ss_pred EcceEECCCCEECCCcEEecCCCcCCcccccCCeEEc-cCeEEEcCCCEe
Q 010006 466 IKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK-SGIVTIIKDALI 514 (520)
Q Consensus 466 i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~-~~~v~Ig~~~~i 514 (520)
|.+|+|+++++||+++++.+. . +.+ ++++.|. +|+++|++|++|
T Consensus 363 i~~~ii~~~~~i~~~~~i~~~-~--~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 363 VRRAILDKNVVVPPGATIGVD-L--EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EEeeEECCCCEECCCCEECCC-c--ccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999763 1 222 3466777 778889888764
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=453.99 Aligned_cols=390 Identities=37% Similarity=0.650 Sum_probs=317.0
Q ss_pred ccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCC
Q 010006 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 85 ~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (520)
.+|++++|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~--~ 88 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF--R 88 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc--c
Confidence 44578999999999999999999999999999999844999999999999999999999999999999998753321 0
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.....++.++...+....+.|++||++++++++++++...+++|||++||++++.++.++++.|+++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 01123455555444322445779999999999999975445789999999999999999999999999999999887765
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhC---CCCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (520)
+++..||++.+|++++|.+|.|||..+.. +. .....+++++|+|+|++++|.+++++.. ....
T Consensus 169 ~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~ 234 (425)
T PRK00725 169 EEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSH 234 (425)
T ss_pred hhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccc
Confidence 66789999999988999999999864321 00 0011458999999999999876775432 1235
Q ss_pred CccccchHhhhhCCceEEEEEec-----------ceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCc
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~-----------g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
+|..|+++.+++ ..++++|.++ +||.||+|+++|+++|+.++... +...+++...++++.....|++
T Consensus 235 ~~~~dii~~l~~-~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~~~~~~~~i~t~~~~~~~~ 312 (425)
T PRK00725 235 DFGKDIIPKIVE-EGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELDLYDRNWPIWTYQEQLPPA 312 (425)
T ss_pred hhhHHHHHHHhc-cCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhhccCCCCccccCCCCCCCC
Confidence 677899999998 5689999986 59999999999999999998754 5556667777888888888888
Q ss_pred eeec------ccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCC
Q 010006 391 KMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 464 (520)
Q Consensus 391 ~i~~------~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 464 (520)
.+.. +.+.+++||+||+|.+|.|.+|+||++|.||++|.|++|++|++ +.||+++
T Consensus 313 ~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~ 373 (425)
T PRK00725 313 KFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSC 373 (425)
T ss_pred eEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCC
Confidence 7742 34678999999999559999999999999999999999999987 6899999
Q ss_pred EEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 465 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 465 ~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
.|++|+|+++|+|+++++|... ...+..+ ..++..|+|+|++++.+-
T Consensus 374 ~i~~~ii~~~~~i~~~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 374 RLRRCVIDRGCVIPEGMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred EEeeEEECCCCEECCCCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 9999999999999999999543 3333333 455667889999997654
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=413.66 Aligned_cols=353 Identities=28% Similarity=0.453 Sum_probs=286.6
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+++.+.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 38999999999999999999999999999986 99999999999999999999999999999999999643321
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
. +... .+ .+ .+||+++|+++.+++.. ++|++++||.+++.|+.+++++|+++.+.+++........ .
T Consensus 74 ~-I~y~--~e--~~---~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~ 140 (358)
T COG1208 74 R-ITYV--VE--KE---PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--S 140 (358)
T ss_pred c-eEEE--ec--CC---cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--C
Confidence 1 2222 11 11 38999999999998863 7999999999999999999999999877888888776543 7
Q ss_pred ceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 249 AFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 249 ~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
.||++..+++ ++|.+|.|||.... ..+++.++|+|+|++++|+ .+. .....+|..++
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~--~~~~~~~~~~~ 198 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIE--KGERFDFEEEL 198 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hcc--cCCcccchhhH
Confidence 8999998855 59999999995311 1146999999999999998 333 23456677789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCC-cCCCceeecccccceEECCCc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
++.+++++..++++.++++|.||++|++|.+++..++..... . +..+...... ... +.+ +++++|+++|
T Consensus 199 ~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~-~----~~~~~~~~~~~~~~-~~i----~gp~~ig~~~ 268 (358)
T COG1208 199 LPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGK-S----PLGPIEEPVVIIRS-AYI----IGPVVIGPGA 268 (358)
T ss_pred HHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccc-c----cccccccccccccc-ceE----eCCEEECCCC
Confidence 999999666699999999999999999999999988864311 1 1111111100 111 222 2677888888
Q ss_pred EEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEe
Q 010006 407 VIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 484 (520)
Q Consensus 407 ~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 484 (520)
.|+. +.|. +|+||++|.||+++.|.+|++|++ +.|+++++|.++||+.||.||+++ .
T Consensus 269 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~- 327 (358)
T COG1208 269 KIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I- 327 (358)
T ss_pred EECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e-
Confidence 8887 7777 799999999999999999999997 589999999999999999999933 2
Q ss_pred cCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 485 NSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 485 ~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++ +.++.++.|..+ +++++++.+++++++
T Consensus 328 ----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 328 ----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred ----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 778 888889999999 999999999888764
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=408.26 Aligned_cols=356 Identities=48% Similarity=0.857 Sum_probs=280.7
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.||||+|||+++||||+|++|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.+.. ... ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~--~~~-~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDF--DGF-IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCc--cCc-cCCCE
Confidence 699999999999999999999999999865899999999999999999999999999999999864322 110 11235
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
+++...+...++.|.+||+++++.+++++++...++|++++||++++.++.++++.|++.++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 55544443345667799999999999988654447899999999999999999999988888888888876655678899
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCccccch
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVI 328 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~~~dil 328 (520)
++.+|++++|..|.|||..+..... ....+++++|+|+|++++|.+++++... ...++..+++
T Consensus 158 ~v~~d~~~~v~~~~ekp~~~~~~~~--------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l 223 (361)
T TIGR02091 158 VMQVDEDGRIVDFEEKPANPPSIPG--------------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223 (361)
T ss_pred EEEECCCCCEEEEEECCCCcccccc--------------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH
Confidence 9999988999999999854321100 0112488999999999998767664321 2345667999
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCC-CcCCCceee-cccccceEECCCc
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP-RYLPPSKML-DADVTDSVIGEGC 406 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~-~~~i~~~~Ig~g~ 406 (520)
+.+++ ..++++|.++++|.||+|+++|+++++.++... +.........++++.. .+.|++.+. ++.+.+++||++|
T Consensus 224 ~~l~~-~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~ 301 (361)
T TIGR02091 224 PRALE-EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGC 301 (361)
T ss_pred HHHhh-cCceEEEeeCCEEEECCCHHHHHHHHHHHhCCC-chhhccccCCceecCCCCCCCceEecCCCEEECCEECCCC
Confidence 99998 569999999999999999999999999998765 3233334444444333 333444443 3356789999999
Q ss_pred EEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 407 VIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 407 ~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||+++.|++|+|+++++||.+++|.|
T Consensus 302 ~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 302 IISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred EECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 99876778999999999999999999888876 5799999999999999999999988864
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=408.98 Aligned_cols=350 Identities=26% Similarity=0.465 Sum_probs=275.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (520)
.|+|||||||+|+||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++|..+ ++.+||.+...|++....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~- 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR- 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc-
Confidence 589999999999999999999999999999866999999999999999999999999887 999999875555432111
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
......+ .+ +.+.|.+|+++++..++++++....++|||++||++++.||.+++++|+++++++|+++.+++.+++
T Consensus 81 ~~~~~~~--~~--e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 81 DGLFVFP--YN--DRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred CcEEEEe--cc--CCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 1111111 22 1222335777789889888853234789999999999999999999999999999999988764456
Q ss_pred cceE-EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCccc
Q 010006 248 TAFG-LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFGS 325 (520)
Q Consensus 248 ~~~g-~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~~~ 325 (520)
..|+ ++..|++++|..+.+++.... ....++|+|+|++++|.+++++..+. ..++..
T Consensus 157 ~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 215 (369)
T TIGR02092 157 SEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215 (369)
T ss_pred cccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHH
Confidence 6774 566777788887754332211 13568999999999887677654332 224456
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEECC
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGE 404 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~ 404 (520)
++++.+++ +.+++++.++++|.||+|+++|++|++.++........+.....++++...+.+|+.+. ++.|++|+||+
T Consensus 216 d~i~~~~~-~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~ 294 (369)
T TIGR02092 216 ELIRENLK-ELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVAN 294 (369)
T ss_pred HHHHHHhc-cCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcC
Confidence 88898887 67999999999999999999999999988876522111212233555555566888775 67788999999
Q ss_pred CcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEe
Q 010006 405 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 484 (520)
Q Consensus 405 g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 484 (520)
||.|+. .|.+|+||++|+|+++|.|.+++++++ +.|++++.+++|+|+++++||+++.+.
T Consensus 295 ~~~i~~-~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 295 GCIIEG-KVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCEEee-EEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeC
Confidence 999974 688999999999999999999999987 589999999999999999999999996
Q ss_pred c
Q 010006 485 N 485 (520)
Q Consensus 485 ~ 485 (520)
+
T Consensus 355 ~ 355 (369)
T TIGR02092 355 G 355 (369)
T ss_pred C
Confidence 5
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=372.90 Aligned_cols=384 Identities=25% Similarity=0.303 Sum_probs=314.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
++.+||||||+||||. ..+||-|-|++|+ ||++|+|+.+...+.+++.+|++|..+++++.+.+.. ..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~--------~v 69 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD--------DV 69 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc--------Cc
Confidence 5799999999999999 5799999999997 9999999999999999999999999999999887621 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.+ +++..| +||++|+.+++++|.+....++||++||+ |+..+ |..|++.|...++.+++++...+ +
T Consensus 70 ~~--v~Q~eq--------lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--d 137 (460)
T COG1207 70 EF--VLQEEQ--------LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--D 137 (460)
T ss_pred eE--EEeccc--------CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--C
Confidence 12 333322 99999999999999543456899999999 77655 88899999999999999998865 5
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhh-hhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCC
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQ-LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~ 322 (520)
|+.||.+..+++|+|..|.|..+... .+++ ...++|+|+|+.+.|.++|..--. ....
T Consensus 138 P~GYGRIvr~~~g~V~~IVE~KDA~~eek~I------------------~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 138 PTGYGRIVRDGNGEVTAIVEEKDASEEEKQI------------------KEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred CCCcceEEEcCCCcEEEEEEcCCCCHHHhcC------------------cEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 89999999998899999998665433 2222 378999999999888888774322 2234
Q ss_pred ccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
|.+|++..+.+++.++.++..+++ ..-+++-.++.+++..+..+. .|...+++.+..+..++.|.|
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p 279 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEP 279 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEec
Confidence 568888888888999999999875 567888888877766553221 244455666667777777777
Q ss_pred Cceee-------------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECC-----ccccccccccc
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADRRF 449 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~-----~~~~~~~~~~~ 449 (520)
++.+. +|.|.||.|+++|.|.. +.|.+|.||++|.||++++|++...+++ .|+|+ +++
T Consensus 280 ~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv---K~a 356 (460)
T COG1207 280 NVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV---KKA 356 (460)
T ss_pred CcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE---ecc
Confidence 66554 45567788888888888 8888888999999999888888776665 36666 999
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccc-ccCCeEEccC-----eEEEcCCCEeCCCccC
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR-ETDGYFIKSG-----IVTIIKDALIPSGTII 520 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~-~~~~~~I~~~-----~v~Ig~~~~i~~gtvi 520 (520)
.||+|. ..++-++|.++.||+++.||++++..|++|..+... ||++++||++ +|+||+++.|++||+|
T Consensus 357 ~ig~gs---Ka~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKGS---KAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCCc---cccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 999999 899999999999999999999999999999988775 9999999999 5999999999999986
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=374.81 Aligned_cols=294 Identities=24% Similarity=0.366 Sum_probs=217.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+|||||||.|+||+|||..+||||+|++|+ |||+|++++|.++|+++|+|++++ +.+++.+|+.+...|++ .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~------~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGA------K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCc------e
Confidence 589999999999999999999999999987 999999999999999999999999 88999999987444421 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
+.++ .+ .+..|++++++.++.++++ ++|++++||++++.++.++++.|+++++++++++.+.+ ++..
T Consensus 74 -~~~~--~~-----~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~ 140 (353)
T TIGR01208 74 -ITYI--VQ-----GEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTA 140 (353)
T ss_pred -EEEE--EC-----CCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--Chhh
Confidence 2222 11 1248999999999988853 68999999999999999999999999999998888754 3567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC--CCCccccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~~~~~di 327 (520)
|+++.+|++++|.+|.|||.... +.+.++|+|+|++.+++ .+++..+. ...+..++
T Consensus 141 ~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~ 198 (353)
T TIGR01208 141 FGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDA 198 (353)
T ss_pred CeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHH
Confidence 99888876679999999987432 24789999999997776 55433331 22234789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccccceEECCCc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGC 406 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~ 406 (520)
++.+++.+.++++|.++++|.||+|+++|+++++.++..... .+ . .+.+.+.+.+++.+. ++.|.+++|+.+|
T Consensus 199 l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~--~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i~~~~ 272 (353)
T TIGR01208 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER--EV-Q---GVDDESKIRGRVVVGEGAKIVNSVIRGPA 272 (353)
T ss_pred HHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc--cc-C---CcCCCCEEcCCEEECCCCEEeCCEEECCc
Confidence 999998788999999999999999999999999999875311 11 1 133333333433332 2333334444444
Q ss_pred EEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 407 VIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 407 ~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
.|++ |.|.+++|+.+|.||++|+|++
T Consensus 273 ~Ig~~~~I~~~~i~~~~~Ig~~~~i~~ 299 (353)
T TIGR01208 273 VIGEDCIIENSYIGPYTSIGEGVVIRD 299 (353)
T ss_pred EECCCCEEcCcEECCCCEECCCCEEee
Confidence 4443 4444444444444444444443
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=378.37 Aligned_cols=392 Identities=21% Similarity=0.288 Sum_probs=282.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+++.+...
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~~------- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGD------- 69 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCCc-------
Confidence 5679999999999999984 689999999987 99999999999999999999999999999988865211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-e-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
+.++. + . +.+|++++++.++.++++ ..++||+++||+ + .+.++.++++.|.+.+++++++..+..
T Consensus 70 ----i~~~~--~--~---~~~Gt~~al~~a~~~l~~-~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~- 136 (459)
T PRK14355 70 ----VSFAL--Q--E---EQLGTGHAVACAAPALDG-FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE- 136 (459)
T ss_pred ----eEEEe--c--C---CCCCHHHHHHHHHHHhhc-cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC-
Confidence 22221 1 1 137999999999998863 246899999998 3 457799999999888888888776653
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (520)
++..|+.+.+|++++|..+.|||...... ..++++++|+|+|++++|.++++...+. ..
T Consensus 137 -~~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 137 -NPFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred -CCCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 35679998898889999999887432110 0135889999999999876666543321 22
Q ss_pred CccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCCC-----CCCccccCCC-ccccCCCcCCCceee
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKPI-----PDFSFYDRSA-PIYTQPRYLPPSKML 393 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~~-----~~~~~~~~~~-~i~~~~~~~~~~~i~ 393 (520)
.+.+|+++.+++++.++++|.++++ |.+++|+++|+++++.++.... ....++++.+ .+...+.+.+++.+.
T Consensus 199 ~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 199 YYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred eeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEe
Confidence 3458999999997889999999987 9999999999999775543210 1123445543 344445555555554
Q ss_pred -cccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccc--cccccccCCCc--------ceee
Q 010006 394 -DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA--DRRFLAAKGSV--------PIGI 460 (520)
Q Consensus 394 -~~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~--~~~~~~~~~~~--------~~~I 460 (520)
++.| .+++||++|.|+. |.|.+|+||++|.|+.+|+|.++++.++.+....+ ..++.+++++. .+.|
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~i 358 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVM 358 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEE
Confidence 3444 5688999999998 88889999999999999999888777665432111 12344444441 1123
Q ss_pred CCCCE------EcceEECCCCEECCCcEEecCCCcCC-cccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 461 GKNSH------IKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 461 g~~~~------i~~~ii~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
|+++. +.+++|+++|.||.++++.|.++... ...+|++++|+.+. ++||++++|++||+|
T Consensus 359 g~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 359 GEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 33333 34578888888888888766544432 23455555555441 788999999988875
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=379.81 Aligned_cols=389 Identities=19% Similarity=0.240 Sum_probs=277.7
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
..+.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+...
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~~-------- 70 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELAP-------- 70 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccCC--------
Confidence 457899999999999996 589999999987 99999999999999999999999988888888765210
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
. +.++. +++..|++++++.++.++....+++||+++||+ ++ ..++.++++.|++.+++++++..+..
T Consensus 71 -~-~~~~~-------~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~-- 139 (482)
T PRK14352 71 -E-VDIAV-------QDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD-- 139 (482)
T ss_pred -c-cEEEe-------CCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--
Confidence 1 22221 123489999999999888543346899999999 44 46699999999888887777776644
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+.+..|++++|.+|.|||....... ...++++|+|+|++++|.+++++..+. ...
T Consensus 140 ~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 DPTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 467899888888899999999988533210 123689999999999998776643332 223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHH------HHhhhhcccCC--------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF------YNANLGITKKP--------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy------~~An~~~l~~~--------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..|+++.+++.+.++++|.++++|.|+++++.| ..++..++... .|...++++.+.|.+.+.+.|
T Consensus 203 ~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~ 282 (482)
T PRK14352 203 YLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHP 282 (482)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeC
Confidence 4589999999978899999999999999998877 44444333221 122334555556666666666
Q ss_pred Cceee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC-cccccccc-ccccccC
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA-DYYETDAD-RRFLAAK 453 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~-~~~~~~~~-~~~~~~~ 453 (520)
++.+. ++.|.+++||++|.|.++.+.+++||.++.||++|.|.+.++++. ......++ .++.+++
T Consensus 283 ~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~ 362 (482)
T PRK14352 283 GTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGR 362 (482)
T ss_pred CcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECC
Confidence 66554 122333444444444333344566666666666666665544443 11111111 4556666
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecC-------CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++ .|++.+.+.+++||++|.||.++++.++ ..+++.+++|.++.|..+ ++||++++|++|++|
T Consensus 363 ~~---~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 363 GT---KVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred Cc---EEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 66 6777778888999999999999999875 445666666666666677 899999999999875
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=370.93 Aligned_cols=385 Identities=18% Similarity=0.222 Sum_probs=264.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++|+|||||||+|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.. . +
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~--------~ 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S--------G 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C--------C
Confidence 469999999999999996 489999999987 99999999999999999999999988888888753 1 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. + .+..|++++++.++.++.. ..++|++++||+ ++ ..++.++++.|+++++++++++.+.+
T Consensus 73 ---i~~v~--~-----~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~-- 139 (481)
T PRK14358 73 ---VAFAR--Q-----EQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP-- 139 (481)
T ss_pred ---cEEec--C-----CCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--
Confidence 23322 1 2348999999999988753 235799999998 44 56799999999998888988887765
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhC---CCCCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~~ 322 (520)
++..||.+.+|++++|.+|.|||...... ....++++|+|+|++++++ +++.-. +....
T Consensus 140 ~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~ 201 (481)
T PRK14358 140 DATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEY 201 (481)
T ss_pred CCCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeE
Confidence 35679999999889999999998743211 0023689999999976532 333211 11223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhh-cccCC-------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG-ITKKP-------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~-~l~~~-------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+.+|+++.+++.+.++++|.++++|..++...+|+.+++. ++... .|....+++...|...+.+.|
T Consensus 202 ~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~ 281 (481)
T PRK14358 202 YLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEP 281 (481)
T ss_pred EHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeC
Confidence 4579999999877899999999998888877666555543 22111 011111233333334444444
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc--ccccccCCCc---------
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV--------- 456 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~--~~~~~~~~~~--------- 456 (520)
++.+. .++.||++|.|+. |.|++|+||++|.|++++.|.++++.++++....+. ..+.+|+++.
T Consensus 282 ~~~I~----~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 282 GVLLR----GQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred CcEEe----CCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 44433 3455677777766 666677777777777777776665555544433222 2344444441
Q ss_pred -----ceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 457 -----PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 457 -----~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.+.||+.+.+.+++||+||.||.++++.|.++.... ..+|++++|+.+. ++||++++|++|++|
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 003333444567889999999999999886544332 2455555555552 679999999988864
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=367.76 Aligned_cols=383 Identities=19% Similarity=0.226 Sum_probs=258.9
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|+|||||||.|+||++ .+||+|+|++|+ |||+|+++.|..+|++++++++++..+++.+++...
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC---------
Confidence 4679999999999999983 689999999997 999999999999999999999999888888887541
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.+.++. + . +..|++++++.++.++++ .++||+++||+ +.+.++.++++.|.+.+ +++++.+.+
T Consensus 70 ---~~~~i~--~--~---~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~- 134 (456)
T PRK09451 70 ---PLNWVL--Q--A---EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD- 134 (456)
T ss_pred ---CcEEEE--C--C---CCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC-
Confidence 022221 1 1 137999999999988752 46899999998 44577999998886543 445555543
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (520)
++..||++.. ++++|.+|.|||...... ....++++|+|+|+++.|.+++++..+. ..
T Consensus 135 -~~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e 195 (456)
T PRK09451 135 -NPTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGE 195 (456)
T ss_pred -CCCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCc
Confidence 4567998754 578999999998642211 0124789999999999998777653331 33
Q ss_pred CccccchHhhhhCCceEEEEE------ecce--EEeCCCHHHHHHhhhh--cccC----CCCCCc------------ccc
Q 010006 322 DFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEAFYNANLG--ITKK----PIPDFS------------FYD 375 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~------~~g~--w~dI~t~~dy~~An~~--~l~~----~~~~~~------------~~~ 375 (520)
.+..|+++.+++++.++++|. +.|| |.|++++++|++++.. ++.. ..|... .+.
T Consensus 196 ~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~ 275 (456)
T PRK09451 196 YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEID 275 (456)
T ss_pred eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEc
Confidence 456899999999788999996 4566 7889999999998742 2111 011111 122
Q ss_pred CCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccc
Q 010006 376 RSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLA 451 (520)
Q Consensus 376 ~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~ 451 (520)
+.+.|...+.+.+++.+. ++.|.+++|+++|.|+. |.|.+|+||++|.|+++|.|.. +.+.+++.....++ +++.+
T Consensus 276 ~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 276 TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 222222222333333332 34445566666666665 6565666666666666655542 22222221111111 35556
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+|+ .|++.+.+.+|.||++|.||+++++.+.++ +++.+++|.++.|.++ ++||++++|++|++|
T Consensus 356 ~~~~---~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~v 427 (456)
T PRK09451 356 GKGS---KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTTV 427 (456)
T ss_pred CCCC---ccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 6666 566666777889999999999999887654 3444444444444555 789999999999875
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=360.63 Aligned_cols=383 Identities=19% Similarity=0.215 Sum_probs=277.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|+++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+..
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~-------- 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA-------- 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC--------
Confidence 5779999999999999984 589999999987 9999999999999999999999999888888875511
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.. +.++. + ++..|++++++.++.+++. ..++|++++||+ +++. ++..+++. .+.+++++++..+..
T Consensus 71 -~~-~~~~~--~-----~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~- 138 (446)
T PRK14353 71 -PD-AEIFV--Q-----KERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA- 138 (446)
T ss_pred -CC-ceEEE--c-----CCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC-
Confidence 01 11111 1 1237999999999988752 246899999998 5554 58888874 455677777776643
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (520)
++..|+.+.. ++++|..+.|||...... ....++++|+|+|+++.|.+++++... ...
T Consensus 139 -~~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 199 (446)
T PRK14353 139 -DPTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE 199 (446)
T ss_pred -CCCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence 3567888777 568999999998643211 012478999999999877667664322 122
Q ss_pred CccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccC------------CCCCCccccCCCccccCCCcCC
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK------------PIPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~------------~~~~~~~~~~~~~i~~~~~~~~ 388 (520)
.+..+.++.+++.+.+++++..+ ++|.+|+||+||..++..+... ..|...++.+.+.|..++.+.|
T Consensus 200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~ 279 (446)
T PRK14353 200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEP 279 (446)
T ss_pred EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECC
Confidence 34578899998878899999997 5799999999999888543211 1122234455566666666666
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEc-ccEEECCcccccccc-ccccccCCCcceeeCCCCE
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSH 465 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~ 465 (520)
++.+. .++.||++|.|+. +.|.+++||++|+||++|.|. ++++.+++.....+. .++.+++++ .|++++.
T Consensus 280 ~~~I~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~---~i~~~~~ 352 (446)
T PRK14353 280 NVVFG----PGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGA---KVNHLTY 352 (446)
T ss_pred CCEEC----CCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCC---EECCeeE
Confidence 66654 4677888888887 777788888888888888887 444444333322222 345555555 6777777
Q ss_pred EcceEECCCCEECCCcEEecC-------CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 466 IKRAIIDKNARIGDNVKIVNS-------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 466 i~~~ii~~~~~Ig~~~~i~~~-------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.+++|+++|.||.++++.+. ..+++.+++|.++.|.++ ++||++++|++|++|
T Consensus 353 i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 353 IGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred EcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 888999999999999988553 345566666666666666 889999999999875
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=364.01 Aligned_cols=381 Identities=20% Similarity=0.225 Sum_probs=253.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 689999999997 99999999999999999999999998888888765 11
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.++.. .. ..|++++++.++.++++ .++|++++||+ ++ ..++.++++.|.+. .+++++.+.+ ++
T Consensus 66 -i~~~~~----~~---~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~--~~ 131 (451)
T TIGR01173 66 -VNWVLQ----AE---QLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP--DP 131 (451)
T ss_pred -cEEEEc----CC---CCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC--CC
Confidence 222211 11 26899999999988853 36899999998 44 45699999988664 3666666653 45
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCCcc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~~~ 324 (520)
..|+.+..|++++|..|.|||...... ...+.+++|+|+|++++|.+++++..+. ...+.
T Consensus 132 ~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~ 194 (451)
T TIGR01173 132 TGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL 194 (451)
T ss_pred CCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH
Confidence 668888888889999999987643211 0124789999999999977666643321 22335
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCCCc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.++++.+++++.++++|.++++ |++++|+++|.+++..+.... .+....+.+...|..++.+.|.+
T Consensus 195 ~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~ 274 (451)
T TIGR01173 195 TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNV 274 (451)
T ss_pred HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCe
Confidence 7999999987889999999987 999999999988755432210 01011122222333333333333
Q ss_pred eee-------------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC-Ccccccccc-ccccccCC
Q 010006 391 KML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFLAAKG 454 (520)
Q Consensus 391 ~i~-------------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~~~~~~~~ 454 (520)
.+. ++.+.+++|+++|.|+. |.|.+++||++|.||++|+|.+..+++ ++.....++ .++.+|+|
T Consensus 275 ~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~ 354 (451)
T TIGR01173 275 ILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG 354 (451)
T ss_pred EEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence 332 22334445555555554 555555555555555555554322222 221111111 23444444
Q ss_pred CcceeeCCCCEEcceEECCCCEECCCcEEecCCCc-------CCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 455 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV-------QEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 455 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v-------~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+ .|++.+.+.+|.|++++.||+++++.+.++. ++.+++|.++.|.++ ++||++++|++|++|
T Consensus 355 ~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 355 S---KAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred c---EecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 4 4555555666888888888888888775443 344444444444445 789999999999875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=356.75 Aligned_cols=375 Identities=17% Similarity=0.212 Sum_probs=276.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+++|||||||.||||++ .+||+|+|++|+ |||+|+++.|..+ +++++|+++++.+++.+++.+.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~-------- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP-------- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------
Confidence 358899999999999996 799999999987 9999999999987 789999999999999999876211
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.+.++.... ....||+++++.+.. ..++||+++||. +... +.++.+.+.++++++.+.+.++
T Consensus 68 --~v~~~~~~~-----~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~~~---~~l~~l~~~~~~~~v~~~~~~~-- 130 (430)
T PRK14359 68 --GVIFHTQDL-----ENYPGTGGALMGIEP-----KHERVLILNGDMPLVEK---DELEKLLENDADIVMSVFHLAD-- 130 (430)
T ss_pred --ceEEEEecC-----ccCCCcHHHHhhccc-----CCCeEEEEECCccCCCH---HHHHHHHhCCCCEEEEEEEcCC--
Confidence 133332211 113789999977321 247899999998 4332 3344455556778887777543
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~ 323 (520)
+..|+.+..| +|+|..+.|++...... ...++.++|+|+|++++|.++++.... ....+
T Consensus 131 ~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~ 192 (430)
T PRK14359 131 PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYY 192 (430)
T ss_pred CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCcee
Confidence 5578887775 68999999887542110 012478999999999999876653221 12334
Q ss_pred cccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccCCC------------CCCccccCCCccccCCCcCCCc
Q 010006 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPI------------PDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~~~------------~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.+|+++.+++.+.+++++.++ ++|.||+|++||+.++..+..+.. +...++.+.+.+...+.+.+++
T Consensus 193 l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~ 272 (430)
T PRK14359 193 LTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGV 272 (430)
T ss_pred hhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCC
Confidence 578999999878999999997 589999999999999865543210 1122344555555555566666
Q ss_pred eee-cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcce
Q 010006 391 KML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRA 469 (520)
Q Consensus 391 ~i~-~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 469 (520)
.+. ++.+.+++|+++|.|+++.|.+|+||+++.|+++|+|+++.+.++.. . +++++ +++ .||+++.|.+|
T Consensus 273 ~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~--i---~~~~~-~~~---~i~~~~~i~d~ 343 (430)
T PRK14359 273 RILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE--T---KNAKL-NGV---KAGHLSYLGDC 343 (430)
T ss_pred EECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE--E---cccEe-ccc---cccccccccCC
Confidence 664 55567899999999988778899999999999999998877766432 1 34455 555 89999999999
Q ss_pred EECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 470 IIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 470 ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+||++|.||.++++.+.++ +++.+.+|.++.|..+ ++||++++|++|++|
T Consensus 344 ~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 344 EIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred EECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 9999999999999987644 4444445555555555 889999999999875
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=358.17 Aligned_cols=387 Identities=18% Similarity=0.204 Sum_probs=255.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
...+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 3 ~~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK14356 3 ASTTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE--------- 69 (456)
T ss_pred CcceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc---------
Confidence 346899999999999997 4799999999987 999999999999999999999999888887766431
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
. ++++. + ++..|++++++.++++++....++|++++||+ +++ .++..+++.|+ +++++++..+.+
T Consensus 70 ~---~~~v~--~-----~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~- 136 (456)
T PRK14356 70 D---ARFVL--Q-----EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP- 136 (456)
T ss_pred C---ceEEE--c-----CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC-
Confidence 1 22221 1 11379999999999988754457899999999 554 56999998875 567777777654
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (520)
++..||.+.. ++|+|..|.|||....... ...+.+.++|+|+|++++|..+++.... ..+
T Consensus 137 -~~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e 199 (456)
T PRK14356 137 -DPGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE 199 (456)
T ss_pred -CCCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc
Confidence 3568998876 5789999999886431100 0013478999999999998766654322 223
Q ss_pred CccccchHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhcccCCCC-----CCcccc-CCCccccCCCcCCCceee
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKPIP-----DFSFYD-RSAPIYTQPRYLPPSKML 393 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~~~~~-----~~~~~~-~~~~i~~~~~~~~~~~i~ 393 (520)
.+..++++.+++.+.+++++.+++ .|++|+|++||.+++..+...... ...+.+ +...+...+.+.+++.+.
T Consensus 200 ~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~ 279 (456)
T PRK14356 200 YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIY 279 (456)
T ss_pred EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEe
Confidence 345789999887788999999876 579999999999987766533110 001111 111222223333333332
Q ss_pred c-ccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc-------------------ccccc
Q 010006 394 D-ADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD-------------------RRFLA 451 (520)
Q Consensus 394 ~-~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-------------------~~~~~ 451 (520)
+ +.+ .++.||++|.|++ |.|.+|+||++|.|+++|.|.++++.+++.....+. .++.+
T Consensus 280 ~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i 359 (456)
T PRK14356 280 GPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVL 359 (456)
T ss_pred CCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEe
Confidence 1 112 3455555555555 555555555555555555555444444332221111 22333
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCC-------CcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++++ .|++++.+.+++||+++.||+++.+.+.+ .+++.++++.++.|..+ ++||++++|++|++|
T Consensus 360 ~~~~---~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 360 GKGA---KANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred cCCc---EecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 3333 34444455567777888888887765533 34455555556666666 789999999999875
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=351.98 Aligned_cols=385 Identities=21% Similarity=0.253 Sum_probs=266.5
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+++|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++++++++.+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 468999999999999984 699999999997 999999999999999999999999998888876541
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. + . +..|++++++.++.++++ ..++|++++||. ++ ..++.++++.|++.++++++++.+.+
T Consensus 67 ---~~~~~--~--~---~~~g~~~al~~a~~~l~~-~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~-- 133 (458)
T PRK14354 67 ---SEFAL--Q--E---EQLGTGHAVMQAEEFLAD-KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE-- 133 (458)
T ss_pred ---cEEEE--c--C---CCCCHHHHHHHHHHHhcc-cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--
Confidence 11211 1 1 137999999999988853 136799999997 44 46699999999887888888777653
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+.+..|++++|+.+.|||...... ...++.++|+|+|+++.|.+.+++.... ...
T Consensus 134 ~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 134 NPTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred CCCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 35678888888889999999987531110 0135789999999998665566543221 222
Q ss_pred ccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..++++.+++.+.++++|.++++ |+++++++||..|+..+..+. .|+..++.+.+.|...+.+.|
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~ 276 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEP 276 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeC
Confidence 347888888887889999999875 567789999988765432111 111123333344444444444
Q ss_pred Cceee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccC
Q 010006 389 PSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAK 453 (520)
Q Consensus 389 ~~~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~ 453 (520)
++.+. ++.|.+++|+++|.|+++.+.+++||++|.||++|.|.. +++.+++.....++ .++.+++
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~ 356 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGE 356 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECC
Confidence 44332 233445566666666655555677777777777777763 33333322222222 3455555
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++ .|++.+.+.+++|++|+.||.++.+.|.++ +++.++++.++.|..+ ++||++++|++|++|
T Consensus 357 ~~---~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 357 GT---KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred CC---EecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 55 466666777888899999999988877543 3444555555555556 789999999999875
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=336.92 Aligned_cols=382 Identities=19% Similarity=0.342 Sum_probs=289.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
..++||+||.-+-+||+|+|...|++|||++ |.|||+|+|++|..+|+.+|+|.+..+..++++|+.+.. |.. .+.
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPla-NVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~--~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLA-NVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYL--PMS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeec-CchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-ccc--ccc
Confidence 5689999999999999999999999999998 569999999999999999999999999999999999843 211 111
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHh-----cCCcEEEEEEec
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRE-----TDADITVAALPM 242 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~-----~~a~~tl~~~~~ 242 (520)
-.+..+.. + + ....+|++|..... .....+|++++||++.+++|.+++++|++ +++.||+++.+.
T Consensus 99 -~~v~ti~s---~-~---~~S~GDamR~id~k--~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~ 168 (673)
T KOG1461|consen 99 -FIVVTICS---G-E---SRSVGDAMRDIDEK--QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKES 168 (673)
T ss_pred -ceEEEEcC---C-C---cCcHHHHHHHHHhc--ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecc
Confidence 11222211 1 1 14456666654421 11358999999999999999999999964 345688888775
Q ss_pred CcccCcceEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC--C
Q 010006 243 DEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--G 319 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--~ 319 (520)
......+-.++.+|. +.|+..|.+... ......++..++...+ ....+.++.+++|-+|+++++. ++.++|. .
T Consensus 169 st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq~ 244 (673)
T KOG1461|consen 169 STRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQT 244 (673)
T ss_pred ccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhhccccee
Confidence 321223334556665 478888875221 1234567777776664 3446688999999999999997 8888876 4
Q ss_pred CCCccccchHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhcccCC----CCCCccccCCCccccCCCcC--CCce
Q 010006 320 ANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKP----IPDFSFYDRSAPIYTQPRYL--PPSK 391 (520)
Q Consensus 320 ~~~~~~dil~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~~~----~~~~~~~~~~~~i~~~~~~~--~~~~ 391 (520)
..||...+|-.-+- |++|+++.... |..++.+...|...+..++.++ +|+..+.+-...-+..-.++ |-+.
T Consensus 245 r~DfV~GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~ 323 (673)
T KOG1461|consen 245 RDDFVRGVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVV 323 (673)
T ss_pred hhhhhhhhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccce
Confidence 56787777775554 99999999975 8999999999998888776553 56656655221111111111 1111
Q ss_pred ee-cccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc
Q 010006 392 ML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 468 (520)
Q Consensus 392 i~-~~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 468 (520)
+. .+.+ .+++||.|+.|+. +.|.||+||.+|+||.+|+|.++.+|.+ |+||+||.|++
T Consensus 324 ~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I~~ 384 (673)
T KOG1461|consen 324 LSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRIDH 384 (673)
T ss_pred ehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceEee
Confidence 11 2333 6789999999998 9999999999999999999999999997 69999999999
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+|++++.|+++|.+.. ||+|+.+ |++|+|-+++.+++|
T Consensus 385 aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 385 AIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 99999999999999975 8999999 999999999999764
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=341.63 Aligned_cols=376 Identities=20% Similarity=0.247 Sum_probs=247.0
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+++...
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 689999999997 99999999999975 899999999888888776541
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.++. + . ..+|++++++.++.+++. .++|++++||+ +.+.++.++++.|+++++++++++.+.+ ++
T Consensus 64 -~~~~~--~--~---~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~ 131 (448)
T PRK14357 64 -VKIFL--Q--E---EQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DP 131 (448)
T ss_pred -cEEEe--c--C---CCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CC
Confidence 12221 1 1 137999999999988853 47899999998 4567799999999888899999888764 46
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC--C-Ccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--N-DFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~--~-~~~ 324 (520)
..|+.+..| +++| .+.|||..+... ...++.++|+|+|++++|.+++++..+.. . .+.
T Consensus 132 ~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~ 192 (448)
T PRK14357 132 TGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL 192 (448)
T ss_pred CCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH
Confidence 789998887 6788 777866532211 11247899999999999877766432211 1 223
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccC------------CCCCCccccCCCccccCCCcCCCc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKK------------PIPDFSFYDRSAPIYTQPRYLPPS 390 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~------------~~~~~~~~~~~~~i~~~~~~~~~~ 390 (520)
.|+++.+ .++++|.+.++ |.+++++++|..+...+... ..|...++++.+.|...+.+.|++
T Consensus 193 ~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~ 268 (448)
T PRK14357 193 TDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMT 268 (448)
T ss_pred HHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCc
Confidence 5666555 35888888888 66777998887765433110 001122444455555555555555
Q ss_pred eee-------------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccCCC
Q 010006 391 KML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKGS 455 (520)
Q Consensus 391 ~i~-------------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~~~ 455 (520)
.+. ++.+.+++||++|.|..+.+.+|+||.++.|++++.|.. +++.+++.....++ .++.||+++
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~ 348 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENT 348 (448)
T ss_pred EEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCc
Confidence 443 122333444444444334444555555555555655543 22222221111111 233444444
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.+++.+.+.+++||+||.||+++++.+..+..+. .+++++++|+.+. ++||+++.|++|++|
T Consensus 349 ---~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 349 ---KAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred ---CccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 3445555667888888888888887765433332 3455555555441 788999999998875
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=310.08 Aligned_cols=330 Identities=20% Similarity=0.322 Sum_probs=266.9
Q ss_pred cceEEEEEeCC--CCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCC
Q 010006 88 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 88 ~~~~aIILAaG--~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (520)
++++||||.|| +||||+||+-+.||||+|++|. |||+|.|+.|.+ .|..+|+++.-|..+.+.+|+..-.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~----- 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQ----- 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHh-----
Confidence 35899999999 8999999999999999999997 999999999998 78999999988888888888876322
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.++. ++..+.. +.++||+++|+..++.+-....+.|+++++|.+++..|++|++.|+..+...+++...+..
T Consensus 75 e~~~-pvrYL~E-------~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~ 146 (407)
T KOG1460|consen 75 EFKV-PVRYLRE-------DNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSR 146 (407)
T ss_pred hccc-chhhhcc-------CCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecH
Confidence 1111 1333322 1249999999999977766567889999999999999999999999999999999999998
Q ss_pred ccCcceEEEEeC-CCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh---hh----
Q 010006 245 KRATAFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DK---- 316 (520)
Q Consensus 245 ~~~~~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~---~~---- 316 (520)
++++.||.+..| ..++|..+.|||.... ++..++|+|+|++++|..+-+ +.
T Consensus 147 e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~ 205 (407)
T KOG1460|consen 147 EQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDLL 205 (407)
T ss_pred hHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhhh
Confidence 899999999998 4599999999999875 458999999999999874321 11
Q ss_pred ---------CCCCCCc---cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCC
Q 010006 317 ---------FPGANDF---GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQP 384 (520)
Q Consensus 317 ---------~~~~~~~---~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~ 384 (520)
.+...|| +.|++..|+. ..++|+|..+++|..|.|+..-+.|+..++.+.. -..+. .+.+
T Consensus 206 ~~~~~~~~l~~g~~d~irLeqDvlspLag-~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk----~t~p~-~Lak-- 277 (407)
T KOG1460|consen 206 EVEKDLPLLQPGPADFIRLEQDVLSPLAG-SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYK----RTHPA-RLAK-- 277 (407)
T ss_pred hhhhcccccCCCccceEEeechhhhhhcC-CCceEEEecccHHHHhccccceeehhhhHHHHHh----hcCch-hhcC--
Confidence 1122344 4799999998 7899999999999999999999999998876431 01110 1110
Q ss_pred CcCCCc--eeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceee
Q 010006 385 RYLPPS--KMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 460 (520)
Q Consensus 385 ~~~~~~--~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I 460 (520)
.|++ .+ |.|+.|.+.+.+.+ ++|. |..||.+++||+|++|.+|+|.+. +.|
T Consensus 278 --~pgt~a~I----igdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 278 --GPGTQAEI----IGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred --CCCCCceE----EeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 1111 22 35677777777776 7776 899999999999999999999996 689
Q ss_pred CCCCEEcceEECCCCEECCCcEEec
Q 010006 461 GKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 461 g~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.+|+.+-+||||-.+.||..+++..
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred eccceEEeeeecccccccceeeecc
Confidence 9999999999999999999999865
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=335.49 Aligned_cols=381 Identities=18% Similarity=0.237 Sum_probs=263.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 689999999987 9999999999999999999999998888888876511
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
.+.++. + .+..|++++++.++.++++ ..+++++++||. +...++.++++.|++.+++++++..+.+ ++
T Consensus 67 ~i~~v~--~-----~~~~G~~~sv~~~~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~ 136 (450)
T PRK14360 67 GLEFVE--Q-----QPQLGTGHAVQQLLPVLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--NP 136 (450)
T ss_pred CeEEEE--e-----CCcCCcHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--CC
Confidence 133332 1 1237899999999988863 235799999999 4456799999999988888887766543 35
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCCcc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~~~ 324 (520)
..|+.+..|++|+|.++.|||...... ..++++++|+|+|+++.|.+++++..+. ...+.
T Consensus 137 ~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 137 KGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred CCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 679999998889999999998643211 1135889999999999988777654332 22334
Q ss_pred ccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC-----CCCCccccC-------CCccccC-------
Q 010006 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP-----IPDFSFYDR-------SAPIYTQ------- 383 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~-----~~~~~~~~~-------~~~i~~~------- 383 (520)
+|.++.+. ++..+.+.++ |..+++++++..+...+.... .+...++.+ ...+...
T Consensus 200 td~i~~~~----~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~ 275 (450)
T PRK14360 200 TDTVSLLD----PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQT 275 (450)
T ss_pred HHHHHHHh----hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCC
Confidence 66666653 3455666765 566999999887765432110 011112222 2222222
Q ss_pred -----CCcCCCceee-cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcc-cEEECCcccccccc-ccccccCCC
Q 010006 384 -----PRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKGS 455 (520)
Q Consensus 384 -----~~~~~~~~i~-~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~-~~~~~~~~~ 455 (520)
+.+.+++.+. ++.|.+++|+++|.|+.+.+.+|+||++|.|+.+|.|.+ +++.+++.....+. .++.+++++
T Consensus 276 ~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~ 355 (450)
T PRK14360 276 HLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGS 355 (450)
T ss_pred EEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCc
Confidence 2233333332 344556666777777555566788888888888888874 44444333222222 345566665
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|++++.+.+++|+++|.||.++++.+.++ +++++++|.++.|.++ ++||++++|++|++|
T Consensus 356 ---~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 356 ---KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred ---EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 566666777789999999999999876443 4455555555555566 889999999998875
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=313.78 Aligned_cols=349 Identities=21% Similarity=0.333 Sum_probs=253.3
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~ 164 (520)
.|.+++|||+|||.||||--++...|||||||++ +|||+|+|++|.++|+++|+|++.. ..+.|+..|...+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn-~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~-- 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGN-KPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKK-- 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCC-cceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccc--
Confidence 4678999999999999999999999999999975 5999999999999999999999986 44567777777554321
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..-++++-...+ . ..||+++|+.....++. +|||+++||.+.+.+++.+++.++..++...+++.....
T Consensus 83 --~~~~v~ip~~~~----~--d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s 151 (433)
T KOG1462|consen 83 --RPDYVEIPTDDN----S--DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS 151 (433)
T ss_pred --cccEEEeecccc----c--ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc
Confidence 111243322222 1 27999999999988874 799999999999999999999999877765554443211
Q ss_pred ---------ccCcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 245 ---------KRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 245 ---------~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+....+.++.++++ +|+.......+ ....+.+..++|+..|... ..+.+.++++|+|+.++++ +|+
T Consensus 152 ~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d--~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d-~l~ 227 (433)
T KOG1462|consen 152 EVPIPGQKGKKKQARDVIGINEDTERLAYSSDSAD--EEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID-LLS 227 (433)
T ss_pred cccccCcccccccccceeeeccccceeEEeecCCc--CCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH-HHh
Confidence 11223445555554 45444332212 2234566667777666533 3467999999999999997 665
Q ss_pred hhCCCCCCccccchHhhhhCC--------------------------------ceEEEEEec--ceEEeCCCHHHHHHhh
Q 010006 315 DKFPGANDFGSEVIPGATSIG--------------------------------MRVQAYLYD--GYWEDIGTIEAFYNAN 360 (520)
Q Consensus 315 ~~~~~~~~~~~dil~~li~~~--------------------------------~~v~a~~~~--g~w~dI~t~~dy~~An 360 (520)
+. +.-.+|..+++|.+++.+ .++++|... .-+.+++|.-.|+++|
T Consensus 228 ~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN 306 (433)
T KOG1462|consen 228 EK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEIN 306 (433)
T ss_pred cC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhh
Confidence 32 233445566666665432 356666654 4588999999999999
Q ss_pred h--hcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC
Q 010006 361 L--GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 361 ~--~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
+ .+.... ++..+....... . ...-.+++|+++|.|++ +.|+.|+||.+|.||+.|+|.+|++|+
T Consensus 307 ~~k~~~~l~-~e~~~~k~~~~~-----------~-~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 307 RDKKLKKLC-SEAKFVKNYVKK-----------V-ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred HHHHHHHhc-cccccccchhhh-----------e-eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 4 333322 221221111000 0 11115789999999997 999999999999999999999999999
Q ss_pred CccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 438 ADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
+ |.||+++.|++||||.++.||+++.+.|
T Consensus 374 n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 374 N-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred C-------------------cEecCCcceecceecccceecCCCeeee
Confidence 8 7899999999999999999999999997
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=302.57 Aligned_cols=281 Identities=23% Similarity=0.338 Sum_probs=225.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.||+++ +...++++++++-.|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g------- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG------- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC-------
Confidence 7999999999999999999999999999987 999999999999999999999997 5577888888855543
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+.+..|. + +.|-|+|+..+.+++.+ ++|+++.||.++..++.++++.+.+...++++++.+++ +++
T Consensus 73 --v~itY~~Q~--~---p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~ 140 (286)
T COG1209 73 --VDITYAVQP--E---PDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPS 140 (286)
T ss_pred --cceEEEecC--C---CCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--Ccc
Confidence 345555552 2 28999999999998874 89999999997777999999999998899999999987 588
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCcc-cc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFG-SE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~~-~d 326 (520)
+||++.+|++++|+.+.|||..+. ++++-+|+|+|++++|. .++.-.|. +.+++ +|
T Consensus 141 rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd 198 (286)
T COG1209 141 RYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITD 198 (286)
T ss_pred cceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehH
Confidence 999999999999999999999875 56999999999999997 55655553 44554 89
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCc
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGC 406 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~ 406 (520)
+++.++++|..+...+..|.|.|.||+++|++|+..+..... +.......|.+++ -+++|...+
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~-----------~~G~~~~~~~~~~-----~~~~i~~~~ 262 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSK-----------RQGFKIACPEEIA-----WNGWIDGPG 262 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHh-----------hcCCEEeChhHEE-----EecEEechH
Confidence 999999999999999999999999999999999998764220 1111112222222 244555555
Q ss_pred EEee-eEEeeeEECCCCEECCCC
Q 010006 407 VIKN-CKIHHSVVGLRSCISEGA 428 (520)
Q Consensus 407 ~I~~-~~i~~s~Ig~~~~Ig~~~ 428 (520)
+++. +.+.+|.+|....++.++
T Consensus 263 ~~~~~~~l~~~~~G~y~~~~~~~ 285 (286)
T COG1209 263 LIGLASQLEKSGYGQYLLELLRA 285 (286)
T ss_pred hhccccchhhcCcchhhhhhhcC
Confidence 5555 555577777777666543
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=303.26 Aligned_cols=241 Identities=34% Similarity=0.616 Sum_probs=196.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeE-EEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
||||||||.||||+|||..+||||+|++|++|||+|+|++|.++|++++ +|+++++.+++.+|+++.+.+.+
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~------- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGV------- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGTE-------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccccc-------
Confidence 7999999999999999999999999999877999999999999999995 55555788899999998665431
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC-cceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN-VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~-~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
.+.++ .|. + ..||+++|++++.++.... .++|++++||++++.++.++++.|+++++++++++...+.++++
T Consensus 74 ~i~~i--~~~--~---~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
T PF00483_consen 74 KIEYI--VQP--E---PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPS 146 (248)
T ss_dssp EEEEE--EES--S---SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGG
T ss_pred cceee--ecc--c---ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccc
Confidence 12222 221 1 2699999999999988632 24599999999999999999999999988543333333345688
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh--hhCCCCCCcccc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFPGANDFGSE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~--~~~~~~~~~~~d 326 (520)
.||++.+|++++|.+|.|||..... +.++++|+|+|++++|..+++ +......++..|
T Consensus 147 ~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d 206 (248)
T PF00483_consen 147 RYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTD 206 (248)
T ss_dssp GSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHH
T ss_pred cceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHH
Confidence 9999999988999999999997542 348999999999999987654 233345567799
Q ss_pred chHhhhhCCceEEEEEecc--eEEeCCCHHHHHHhhhhccc
Q 010006 327 VIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g--~w~dI~t~~dy~~An~~~l~ 365 (520)
+++.+++++..+.++.+++ +|.||||+++|++|++.+++
T Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 207 AIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999888899999998 79999999999999998764
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=302.14 Aligned_cols=247 Identities=21% Similarity=0.275 Sum_probs=190.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (520)
|..|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+...+.+. +..
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999987 9999999999999999999999999999999997643210 000
Q ss_pred --------CcCC---CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHHH
Q 010006 165 --------YKNE---GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFI 225 (520)
Q Consensus 165 --------~~~~---~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll 225 (520)
.... ..+.+....| ++++||++++++++.++++ ++|++++||++++ .++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q-----~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li 151 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQ-----AQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMI 151 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeC-----CCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHH
Confidence 0000 0122222222 2459999999999999863 6899999999886 5899999
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceEEEEeC----CCCC---EEEeeeCCChhhhhhcccccccccCCchhhccCCceee
Q 010006 226 QAHRETDADITVAALPMDEKRATAFGLMKID----EEGR---IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (520)
Q Consensus 226 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g~---V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (520)
+.|.+.++.++ ++.+.. +++..||++.+| ++|+ |.+|.|||..+.. ..+.+++
T Consensus 152 ~~~~~~~~~~~-~~~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~ 211 (297)
T TIGR01105 152 ARFNETGRSQV-LAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMA 211 (297)
T ss_pred HHHHHhCCcEE-EEEEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEE
Confidence 99987777664 444433 247899999984 4564 5899999964321 0135899
Q ss_pred eeEEEEeHHHHHHHHhhhCCC-CCC-ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 299 MGIYVISKDVMLNLLRDKFPG-AND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 299 ~GIyifs~~vl~~ll~~~~~~-~~~-~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+|+|+|++++|. .++...+. .+. ..+|+++.+++ +.+++++.++|+|+|||+|++|++||..+.
T Consensus 212 ~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 212 VGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 999999999987 45443222 122 24799999998 669999999999999999999999988864
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=290.10 Aligned_cols=235 Identities=21% Similarity=0.369 Sum_probs=192.1
Q ss_pred EEEEeCC--CCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 92 aIILAaG--~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... ..+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999997 999999999999 69999999999999999999986321 001
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....+ .+ ..||+++++.++.+++....++|+|++||++++.|+.++++.|+++++++|+++.+.+.++..
T Consensus 74 --~~i~~~~~--~~---~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~ 146 (257)
T cd06428 74 --VPIRYLQE--YK---PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQAS 146 (257)
T ss_pred --ceEEEecC--Cc---cCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 22222222 11 289999999999888643347899999999999999999999999999999998876555678
Q ss_pred ceEEEEeC-CCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---------
Q 010006 249 AFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--------- 318 (520)
Q Consensus 249 ~~g~v~~d-~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--------- 318 (520)
.||++.+| ++++|..|.|||.... +.++++|+|+|++++|..+ .+..+
T Consensus 147 ~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e~~~~ 204 (257)
T cd06428 147 NYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQEAQLG 204 (257)
T ss_pred cccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccccccc
Confidence 89999998 6789999999987432 2489999999999998644 32221
Q ss_pred ---------CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 319 ---------GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 319 ---------~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
...++..|+++.+++ ..++++|.++|||.||+|+++|+++|+.+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 205 DDNNREGRAEVIRLEQDVLTPLAG-SGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccceeeehhhhhhHHhc-cCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 112345799999998 56999999999999999999999999753
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=293.56 Aligned_cols=246 Identities=22% Similarity=0.283 Sum_probs=191.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CC-
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MG- 163 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~- 163 (520)
|..|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++||++|+|++++..+++.+|+...+.+. +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999997 9999999999999999999999999999999997533210 00
Q ss_pred -----------CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHH
Q 010006 164 -----------GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (520)
Q Consensus 164 -----------~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (520)
.... ..+.+....| .+ .+||++++++++.++. .++|+++.||++++ .|+.++
T Consensus 80 ~~k~~~l~~~~~~~~-~~~~i~~~~q--~~---~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~l 150 (297)
T PRK10122 80 RVKRQLLAEVQSICP-PGVTIMNVRQ--GQ---PLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAM 150 (297)
T ss_pred cchhhhHHhhhhccC-CCceEEEeec--CC---cCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHH
Confidence 0000 0122222333 12 3899999999999885 36799999999886 489999
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeC----CCC---CEEEeeeCCChhhhhhcccccccccCCchhhccCCcee
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (520)
++.|.+.+++++++ ....+ ++..||++.+| ++| +|++|.|||..+.. ..++++
T Consensus 151 i~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~ 210 (297)
T PRK10122 151 IARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEE
Confidence 99998888775444 44332 57899999986 355 78999999964321 013589
Q ss_pred eeeEEEEeHHHHHHHHhhhCCC--CCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 298 SMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 298 ~~GIyifs~~vl~~ll~~~~~~--~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
++|+|+|++++|..+.+ ..+. ...+..|+++.+++ +.++.+|.++|+|+|||+|++|++|+..+.
T Consensus 211 ~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~-~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 211 AVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHh-CCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999985543 2232 22334799999998 679999999999999999999999999984
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=282.63 Aligned_cols=232 Identities=23% Similarity=0.354 Sum_probs=192.3
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+... ..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~-----~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEK-----KLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccc-----cCC--
Confidence 6899999999999999999999999999987 99999999999999999999999999999999875210 111
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
++++...+ ....|++++++.++.+++. ..++|++++||++++.++.++++.|+++++++++++.+.+ ++..
T Consensus 73 -~~i~~~~~-----~~~~G~~~al~~a~~~~~~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 143 (233)
T cd06425 73 -IKITFSIE-----TEPLGTAGPLALARDLLGD-DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSK 143 (233)
T ss_pred -eEEEeccC-----CCCCccHHHHHHHHHHhcc-CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--Cccc
Confidence 33332211 1138999999999988863 2467999999999999999999999999999999988764 3568
Q ss_pred eEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccch
Q 010006 250 FGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (520)
Q Consensus 250 ~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil 328 (520)
||++.+|+ +++|.++.|||.... +.++++|+|+|++++|..+ .. ...++..+++
T Consensus 144 ~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~~~~ 198 (233)
T cd06425 144 YGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIEKEIF 198 (233)
T ss_pred cCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---CcccchhhhH
Confidence 99999987 789999999987532 2478999999999999744 32 2234457899
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+.+++ ..++++|.++|+|.||+|+++|++|+..++
T Consensus 199 ~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 199 PKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred HHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998 569999999999999999999999988653
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=286.75 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=188.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++.+ ..+.+.+|+++...|++.
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~-- 77 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLN-- 77 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCce--
Confidence 5679999999999999999999999999999997 999999999999999999987764 467788898875555321
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
+. ...| .. +.|+++++..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++.+++
T Consensus 78 -----i~--y~~q--~~---~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~- 141 (292)
T PRK15480 78 -----LQ--YKVQ--PS---PDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN- 141 (292)
T ss_pred -----eE--EEEC--CC---CCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-
Confidence 11 2222 11 38999999999998853 56888899975 578999999999888888998887764
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF 323 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~ 323 (520)
++..||++..|++|+|+.|.|||..+. ++++++|+|+|++++++ .++...+. ..++
T Consensus 142 -~p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~ 198 (292)
T PRK15480 142 -DPERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSARGEL 198 (292)
T ss_pred -CcccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCCCee
Confidence 467899999998899999999997432 35889999999999887 44433332 2233
Q ss_pred -cccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 324 -GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 -~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
.+|+++.+++++.....+...+ +|+|+||+++|.+|+..+.
T Consensus 199 ~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 199 EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 3789999988665445556678 5999999999999998764
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=275.81 Aligned_cols=231 Identities=25% Similarity=0.362 Sum_probs=185.4
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccC-hhHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.+...|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~------- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG------- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC-------
Confidence 6899999999999999999999999999975 9999999999999999999998754 478889988744443
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.+....+ . ...|++++++.++.+++ .++|++++||++ .+.++.++++.|.+.++++++++.+.++ +
T Consensus 73 --~~i~~~~~--~---~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (240)
T cd02538 73 --IRITYAVQ--P---KPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--P 140 (240)
T ss_pred --ceEEEeeC--C---CCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--h
Confidence 22222222 1 13799999999998886 368999999984 4677999999998888889988877643 5
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-cc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GS 325 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~ 325 (520)
..||.+.+|++|+|+.|.|||.... ..+.++|+|+|++++|+ ++++..+. ..++ ..
T Consensus 141 ~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~ 198 (240)
T cd02538 141 ERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEIT 198 (240)
T ss_pred hcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhH
Confidence 6899999998899999999986432 24789999999999885 56543322 2223 36
Q ss_pred cchHhhhhCCceEEEEEec--ceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~--g~w~dI~t~~dy~~An~~~ 363 (520)
++++.+++ ..++.++.++ ++|+||||+++|++++..+
T Consensus 199 d~~~~l~~-~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 199 DVNNEYLE-KGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHH-hCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 89999998 4467777766 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=276.03 Aligned_cols=243 Identities=19% Similarity=0.297 Sum_probs=189.8
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhc--cCCCCcCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYKNE 168 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~~~~ 168 (520)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.... ++......
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999987 999999999999999999999999999999999763211 00000000
Q ss_pred CeEEEeecccCC-----CCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 169 GFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 169 ~~v~vl~~~~~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+...+......+ ..+.-.+||++++++++.+++ .++|++++||++++.|+.++++.|.+.++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~-- 154 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ-- 154 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--
Confidence 000000000000 000113899999999998885 3789999999999999999999999999998877653
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
++..||.+.+|+ ++|+.|.|||... +.++++|+|+|++++|. ++++ ...++
T Consensus 155 --~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~---~~~~~ 205 (254)
T TIGR02623 155 --PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDG---DATVW 205 (254)
T ss_pred --CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hccc---cCchh
Confidence 356899999985 6999999998542 23789999999999985 5553 23356
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
..|+++.++++ .++++|.++|+|.||+|+++|.+++..+.....|
T Consensus 206 ~~d~i~~l~~~-~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 206 EQEPLETLAQR-GELSAYEHSGFWQPMDTLRDKNYLEELWESGRAP 250 (254)
T ss_pred hhhHHHHHHhC-CCEEEEeCCCEEecCCchHHHHHHHHHHHcCCCC
Confidence 78999999984 5899999999999999999999999988765533
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=277.51 Aligned_cols=244 Identities=23% Similarity=0.313 Sum_probs=188.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccC-----CC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999997 99999999999999999999999999999999976443310 00
Q ss_pred Cc--------CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhcCC
Q 010006 165 YK--------NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDA 233 (520)
Q Consensus 165 ~~--------~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a 233 (520)
.+ ..+ +++.... +.+..|++++++.++.++++ ++|++++||+++.. ++.++++.|++.++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~-----~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR-----QKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE-----cCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 00 000 1221111 12348999999999988863 68999999997753 49999999987776
Q ss_pred cEEEEEEecCcccCcceEEEEeCC----CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 234 DITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 234 ~~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
++ +++.+.+.+++..||++.+|+ .++|..+.|||..... .+.++++|+|+|++++|
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIF 210 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHH
Confidence 64 555565545577899999985 2489999999864211 13488999999999998
Q ss_pred HHHHhhhCC-CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 310 LNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 310 ~~ll~~~~~-~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
..+.+.... ....+..++++.+++++ ++++|.++|+|.||+|+++|+++|+.+.
T Consensus 211 ~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 211 DILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 755331111 12233578899999855 9999999999999999999999999764
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=276.23 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=184.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccC-----CC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (520)
|+|||||||.||||+|||..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+++.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999997 99999999999999999999999999999999985432210 00
Q ss_pred Cc-----C--CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhcCCc
Q 010006 165 YK-----N--EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDAD 234 (520)
Q Consensus 165 ~~-----~--~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a~ 234 (520)
.. . ...+.+.... +.+..|++++++.++.++. .++|++++||+++.. ++.++++.|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~-----~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVR-----QKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred HHHHHHhhhccccceEEEEe-----cCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 00 0 0001111111 1234899999999998884 378999999997653 799999999988887
Q ss_pred EEEEEEecCcccCcceEEEEeCC----CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHH
Q 010006 235 ITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310 (520)
Q Consensus 235 ~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~ 310 (520)
+ +++...+.++...||++.+|+ +++|+.|.|||..... .+.++++|+|+|++++|.
T Consensus 152 i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 152 I-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred E-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHH
Confidence 6 555555555678899999862 3699999999953211 134889999999999988
Q ss_pred HHHhhhCCCC-CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHh
Q 010006 311 NLLRDKFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (520)
Q Consensus 311 ~ll~~~~~~~-~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~A 359 (520)
.+........ ..+..|+++.+++ ..++++|.++|||.||+|+++|++|
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~l~~-~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRKLLE-KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHHHHh-cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 6544222212 2334788999998 4689999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=277.44 Aligned_cols=231 Identities=26% Similarity=0.403 Sum_probs=185.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEec-cChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++..+|+++|+|+++ ++.+.+.+++.++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g-------- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWG-------- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccC--------
Confidence 589999999999999999999999999987 99999999999999999998886 56678888887754443
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....| .+ ..|+++++..++.++++ ++++++.||. +++.++.++++.|.+.++++++++.+++ ++.
T Consensus 72 -~~i~~~~q--~~---~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~ 140 (286)
T TIGR01207 72 -VNLSYAVQ--PS---PDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPE 140 (286)
T ss_pred -ceEEEEEc--cC---CCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHH
Confidence 22323333 12 28999999999999863 6788889997 5678899999999888888998888765 467
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCCCc-ccc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GSE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~~~-~~d 326 (520)
.||++..|++|+|.+|.|||..+. ++++++|+|+|++++++ ++++..+ ...++ ..|
T Consensus 141 ~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitd 198 (286)
T TIGR01207 141 RYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITD 198 (286)
T ss_pred HCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHH
Confidence 899999998899999999996432 34899999999999876 5554333 22333 369
Q ss_pred chHhhhhCCceEEEEEe-cce-EEeCCCHHHHHHhhhhcc
Q 010006 327 VIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 327 il~~li~~~~~v~a~~~-~g~-w~dI~t~~dy~~An~~~l 364 (520)
+++.+++++ ++.++.+ .|+ |.|+||+++|++|+..+.
T Consensus 199 v~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 199 LNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 999999854 4555555 576 999999999999987653
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=277.10 Aligned_cols=244 Identities=23% Similarity=0.318 Sum_probs=191.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCCC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~ 165 (520)
+-|+|||||||.|+||+|+|+.+||+|+|++|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.+.|+ ++.+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 348999999999999999999999999999997 9999999999999999999999999999999998755442 1111
Q ss_pred cCC----C-------eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--------ccHHHHHH
Q 010006 166 KNE----G-------FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFIQ 226 (520)
Q Consensus 166 ~~~----~-------~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll~ 226 (520)
... . ...+....| ....|+++++++++.++. +++|++++||++++ .++.++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-----~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~ 157 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIR 157 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-----CCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHH
Confidence 000 0 011211122 224899999999998875 36899999999874 68999999
Q ss_pred HHHhcCCcEEEEEEecCcccCcceEEEEeCC-------CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeee
Q 010006 227 AHRETDADITVAALPMDEKRATAFGLMKIDE-------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (520)
Q Consensus 227 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~-------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (520)
.|.+.+++ ++++.++ +++..||++..|+ +++|..|.|||..... .+.++++
T Consensus 158 ~h~~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~ 215 (302)
T PRK13389 158 RFDETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIV 215 (302)
T ss_pred HHHhcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEE
Confidence 99888776 6777665 3467899998863 3579999999974321 1248999
Q ss_pred eEEEEeHHHHHHHHhhhCC--CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 300 GIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 300 GIyifs~~vl~~ll~~~~~--~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
|+|+|++++|. +++...+ ....+..|+++.+++ +.++++|.++|+|+|||||++|++|+..+.
T Consensus 216 GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 216 GRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred EEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 99999999985 6654332 222345899999998 568999999999999999999999999874
|
|
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=265.89 Aligned_cols=233 Identities=25% Similarity=0.394 Sum_probs=191.6
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+...|++ .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~------~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGV------R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCC------e
Confidence 7899999999999999999999999999987 99999999999999999999999999999999987544421 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
+.++. + .+..|++++++.++.+++ .++|++++||++++.++.++++.|.+.++++++++.+.+ ++..
T Consensus 74 -i~~~~--~-----~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 140 (236)
T cd04189 74 -ITYIL--Q-----EEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRR 140 (236)
T ss_pred -EEEEE--C-----CCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--Cccc
Confidence 22221 1 123799999999998875 368999999999999999999999988889888888764 3567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC--CCCccccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~~~~~di 327 (520)
|+++.+|+ ++|..+.|||.... +.+.++|+|+|++++|..+ +...+. ...+..++
T Consensus 141 ~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~ 197 (236)
T cd04189 141 FGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDA 197 (236)
T ss_pred ceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHH
Confidence 88888874 59999999986432 2478999999999998744 332221 12234789
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
++.+++.+.+++++.++++|.+|+|+++|.++++.+++
T Consensus 198 ~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 198 IQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999878899999999999999999999999988764
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=265.84 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=180.0
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
+|||||||.|+||+|+|+.+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ ..|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~--------- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFG--------- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCC---------
Confidence 589999999999999999999999999997 99999999999999999999999999999999986 2232
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHH--hcCCcEEEEEEecCcccCc
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR--ETDADITVAALPMDEKRAT 248 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~--~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....+ +.+..|++++++.++.++++ ++|++++||++++.++.++++.|. +.++.+++...+.+ ...
T Consensus 70 ~~i~~~~~----~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (221)
T cd06422 70 LRITISDE----PDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHN 140 (221)
T ss_pred ceEEEecC----CCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCC
Confidence 22222221 11247999999999988853 689999999999999999999998 45566666655533 466
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccch
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil 328 (520)
.||.+.+|++++|..+.+||.. .+.++|+|+|++++|..+.+. .....+++
T Consensus 141 ~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~ 191 (221)
T cd06422 141 GVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLW 191 (221)
T ss_pred CcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHH
Confidence 8899999988999999888753 278999999999998855331 22347899
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHh
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~A 359 (520)
+.+++ ..++.++.++++|.||+|+++|.+|
T Consensus 192 ~~l~~-~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 192 DRAIA-AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHH-cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99998 5689999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=266.59 Aligned_cols=242 Identities=18% Similarity=0.274 Sum_probs=190.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCCCcCCC
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGYKNEG 169 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 169 (520)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+..... +......+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999987 9999999999999999999999999999999998743211 00000111
Q ss_pred eEEEeecccCC-----CCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 170 FVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 170 ~v~vl~~~~~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
.+.++.....+ ....-.+|++++++.++.++.+ .++|++++||++++.++.++++.|.+.++++++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12222210000 0000126799999999988852 2689999999999999999999999989998887653
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
+...|+.+.+|++|+|..+.|||... +.++++|+|+|++++++. ++.. ..++.
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~ 207 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFE 207 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhh
Confidence 35689999999889999999998743 137889999999999864 4322 44566
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
.++++.++++ .++++|.++|+|.+|+|+++|..++..+....
T Consensus 208 ~d~l~~li~~-~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 208 REPLERLAKD-GELMAYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred HHHHHHHHhc-CCEEEEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence 7999999984 58999999999999999999999998886654
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=255.87 Aligned_cols=223 Identities=27% Similarity=0.491 Sum_probs=183.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.++ .. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~------~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGG------IR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccC------ce-E
Confidence 69999999999999999999999999987 9999999999999999999999999999999987643221 11 1
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.+.. + .+ ..|++++++.++..++ .++|++++||++++.++.++++.|++.+.++++++.+.+. ...|+
T Consensus 73 ~~~~--~--~~---~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 140 (223)
T cd06915 73 YYVI--E--PE---PLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYG 140 (223)
T ss_pred EEEE--C--CC---CCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcce
Confidence 1111 1 11 2899999999998874 3789999999998889999999998888888888877543 46788
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
.+.+|++|+|..+.|||.... +++.++|+|+|++++|..+... ..++.+++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l 195 (223)
T cd06915 141 NVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPAL 195 (223)
T ss_pred eEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHH
Confidence 888988899999999876431 3588999999999998754221 234567899999
Q ss_pred hhCCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
++.+ ++.+|.++++|.||+|++||+.|+
T Consensus 196 ~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 196 VKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 9855 999999999999999999999873
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=252.89 Aligned_cols=217 Identities=29% Similarity=0.531 Sum_probs=181.6
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+...|+. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-------~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGV-------NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCc-------eE
Confidence 69999999999999999999999999987 99999999999999999999999988999999877433321 12
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++. + . ...|++++++.++..+. .++|++++||++++.++.++++.|.++++++++++.+.+ ++..|+
T Consensus 73 ~~~~--~--~---~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 140 (217)
T cd04181 73 EYVV--Q--E---EPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYG 140 (217)
T ss_pred EEEe--C--C---CCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 1 1 12799999999998872 479999999999999999999999999999998888755 567899
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
.+.+|++++|..+.|||.... .+++++|+|+|++++++ ++++......++..++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l 198 (217)
T cd04181 141 VVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLL 198 (217)
T ss_pred EEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHH
Confidence 999998899999999987542 24889999999999985 66544333456678999999
Q ss_pred hhCCceEEEEEecceEEeCC
Q 010006 332 TSIGMRVQAYLYDGYWEDIG 351 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~ 351 (520)
++ ..+++++.++|+|+||+
T Consensus 199 ~~-~~~v~~~~~~g~w~dig 217 (217)
T cd04181 199 IE-EGKVYGYPVDGYWLDIG 217 (217)
T ss_pred Hh-cCCEEEEEcCCEEecCC
Confidence 98 48999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=252.37 Aligned_cols=220 Identities=25% Similarity=0.453 Sum_probs=178.8
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|+.+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+...|++ . +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~------~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGV------N-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCc------c-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999877433321 1 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++ .+ ++..|+++++..+.... .++|++++||.+++.++.++++.|++.++++++++.+.. ....|+
T Consensus 73 ~~~--~~-----~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g 139 (220)
T cd06426 73 SYV--RE-----DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYG 139 (220)
T ss_pred EEE--EC-----CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 221 11 11378999987665433 478999999999999999999999988888888877643 345689
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~l 331 (520)
++..|+ ++|..+.|||... .++++|+|+|+++++..+ ++ .......++++.+
T Consensus 140 ~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~ 191 (220)
T cd06426 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKL 191 (220)
T ss_pred EEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHH
Confidence 998885 8999999987642 377899999999998743 31 2222246889999
Q ss_pred hhCCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 332 i~~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
++.+.++++|+++++|.||+|+++|++||
T Consensus 192 i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 192 IKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 98778899999999999999999999886
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=244.17 Aligned_cols=250 Identities=22% Similarity=0.339 Sum_probs=203.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (520)
|+-.+|||+|||.||||-|.|+..||-||||-++ |+|+|+++.+..+||++|++||+.++..|.+|+...+.+. +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4668999999999999999999999999999876 9999999999999999999999999999999998766432 100
Q ss_pred CcC----------CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc---cHHHHHHHHHhc
Q 010006 165 YKN----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRET 231 (520)
Q Consensus 165 ~~~----------~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~ 231 (520)
+-+ ...+.+....| .+ ++|.+||+++|..++.+ ++|.|+.+|.++.. .+.+|++.+.+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ--~e---~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQ--KE---PLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEec--CC---CCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 000 11233444444 22 38999999999999974 89999999997764 399999999988
Q ss_pred CCcEEEEEEecCcccCcceEEEE----eCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeH
Q 010006 232 DADITVAALPMDEKRATAFGLMK----IDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (520)
Q Consensus 232 ~a~~tl~~~~~~~~~~~~~g~v~----~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~ 306 (520)
+.. ++.+.+++.++.+.||++. .+++ .+|..+.|||....+ .++++..|-|+|++
T Consensus 153 g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p 212 (291)
T COG1210 153 GGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTP 212 (291)
T ss_pred CCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCH
Confidence 876 4777888878899999997 4333 589999999987654 26799999999999
Q ss_pred HHHHHHHhhhCCCC-CCc-cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 307 DVMLNLLRDKFPGA-NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 307 ~vl~~ll~~~~~~~-~~~-~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
++|+ +|++..++. +++ .+|.|..+++ ...+++|.++|..+|+|++..|++|+..+....
T Consensus 213 ~IFd-~L~~~~~G~ggEiQLTDai~~L~~-~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 213 EIFD-ILEETKPGAGGEIQLTDAIKKLLK-KEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHHH-HHhhCCCCCCCEeeHHHHHHHHHh-hCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9998 666544433 232 4888999998 689999999999999999999999999886553
|
|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=237.89 Aligned_cols=199 Identities=48% Similarity=0.833 Sum_probs=162.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.||||+|+|+..||+|+|++|++|||+|+++++.++|+++|+|+++++.+++.+|+.+...|++. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999999865999999999999999999999999999999999876555432 111224
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++...+. .+++|..||+++++.++.++++...++|++++||++++.++.++++.|++.++++|+++.
T Consensus 79 ~~~~~~~~-~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 79 FILPPQQR-KGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEeCcccC-CCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 44443321 134567999999999999886433478999999999999999999999988888877664
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCCCccccchHh
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPG 330 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~~~~~dil~~ 330 (520)
+++|+|+|++++|.++++...+ ...++.+|+++.
T Consensus 147 ---------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~ 181 (200)
T cd02508 147 ---------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181 (200)
T ss_pred ---------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 2479999999999777765322 234567899999
Q ss_pred hhhCCceEEEEEecceEEeC
Q 010006 331 ATSIGMRVQAYLYDGYWEDI 350 (520)
Q Consensus 331 li~~~~~v~a~~~~g~w~dI 350 (520)
++++ .++++|.++|+|.||
T Consensus 182 l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 182 MLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred Hhcc-CcEEEEEeCCeEecC
Confidence 9995 799999999999996
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=244.05 Aligned_cols=205 Identities=19% Similarity=0.309 Sum_probs=159.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+++.+.|+.... ..
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~--~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSS--LM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccC--cc
Confidence 5899999999999999999999999999987 99999999999999999999999999999999998766643210 01
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHH--HHhhhcCcceEEEEeCceeccccHHHHHHHHHh-----cCCcEEEEEEec
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYL--WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRE-----TDADITVAALPM 242 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~--~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~-----~~a~~tl~~~~~ 242 (520)
.+.+. .+ .+ ..|++++++... ..+ .++|++++||++++.++.++++.|++ +++++|+++.+.
T Consensus 78 ~i~~~--~~--~~---~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 78 IVIII--MS--ED---CRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred eEEEE--eC--CC---cCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 12222 11 11 267888886543 222 36899999999999999999999987 478899888887
Q ss_pred Cccc----CcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 243 DEKR----ATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 243 ~~~~----~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
++.+ ...++++.+|++ ++|..|.|||..+.....++++.++...+. ...++++.++|+|+|++++|
T Consensus 147 ~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~-~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 147 SPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSE-VEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCc-EEEECCceecCEEEeCCCCC
Confidence 6443 223678888866 899999999987654445566666655443 33557899999999999764
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=236.27 Aligned_cols=223 Identities=21% Similarity=0.248 Sum_probs=168.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
.||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++++|++++.. ....++....... ..+ +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~---~~~---~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL---APN---A 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh---CCC---C
Confidence 48999999999999999999999999997 99999999999999999999986432 1222332211100 001 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++.... . ..|++++++.++..+.. .++|++++||++++.++.++++.|.+.+.++++++... +...|+
T Consensus 73 ~i~~~~~---~---~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 141 (231)
T cd04183 73 TVVELDG---E---TLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWS 141 (231)
T ss_pred EEEEeCC---C---CCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeE
Confidence 2221111 1 38999999999988742 36899999999999999999998887777777766654 345799
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHH-HHHHHHhhhC----CCCC-Cccc
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRDKF----PGAN-DFGS 325 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~ll~~~~----~~~~-~~~~ 325 (520)
.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+++++.. .... .+..
T Consensus 142 ~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (231)
T cd04183 142 YVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYIS 198 (231)
T ss_pred EEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEh
Confidence 9999988999999887432 23779999999987 5555554321 1122 2347
Q ss_pred cchHhhhhCCceEEEEEe-cceEEeCCCHHHH
Q 010006 326 EVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 356 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~-~g~w~dI~t~~dy 356 (520)
++++.+++.+.+|+++.+ +++|.||||+++|
T Consensus 199 d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 199 PLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 899999987888999999 5899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=237.06 Aligned_cols=223 Identities=19% Similarity=0.268 Sum_probs=170.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~--------~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYP--------N---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccC--------C---e
Confidence 69999999999999999999999999987 9999999999999999999999999999999987521 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCcceE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g 251 (520)
.++...+ .+ ..|++++++.++.++. ++|++++||++++.+ +++.|.+.++++++++.+........++
T Consensus 69 ~~~~~~~--~~---~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (229)
T cd02523 69 KFVYNPD--YA---ETNNIYSLYLARDFLD----EDFLLLEGDVVFDPS---ILERLLSSPADNAILVDKKTKEWEDEYV 136 (229)
T ss_pred EEEeCcc--hh---hhCcHHHHHHHHHHcC----CCEEEEeCCEecCHH---HHHHHHcCCCCCeEEEccCcccccccce
Confidence 3332111 11 3799999999998873 689999999998664 6677777788888888774433345565
Q ss_pred EEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh---hCC--CCCCcccc
Q 010006 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFP--GANDFGSE 326 (520)
Q Consensus 252 ~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~~~--~~~~~~~d 326 (520)
....| ++++..+.+||..... ..+.++|+|+|+++++..+.+. ..+ ....+.++
T Consensus 137 ~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 137 KDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred eeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 54333 3789999988865321 2478999999999998755331 111 23456689
Q ss_pred chHhhhh-CCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 327 VIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 327 il~~li~-~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
+++.+++ .+.+++.+.. ++|.||||+++|++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987 3445555555 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=229.68 Aligned_cols=234 Identities=24% Similarity=0.340 Sum_probs=170.9
Q ss_pred eEEEEEeCCCCCCCCcccc-CCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChh-HHHHHHHHhhhccCCCCc
Q 010006 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~-~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 166 (520)
|++||||||.||||+|||+ .+||+|+|++|++|||+++++++... ++++|+|+++++.. .+.+++.+ ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~~------- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-GL------- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-cC-------
Confidence 6899999999999999996 79999999998559999999999998 49999999997553 45555544 00
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc-CcceEEEEeCceecc--ccHHHHHHHHHh---cCCcEEEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYR--MDYERFIQAHRE---TDADITVAAL 240 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~--~dl~~ll~~h~~---~~a~~tl~~~ 240 (520)
..+.++.. +. ..||++++..++.++... .++.++|++||+++. .++.++++.+.+ .++.+|+.+.
T Consensus 73 --~~~~ii~e---p~----~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~ 143 (274)
T cd02509 73 --PEENIILE---PE----GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIK 143 (274)
T ss_pred --CCceEEEC---CC----CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 01223321 11 279999999999887642 346899999999776 457777765543 5677888887
Q ss_pred ecCcccCcceEEEEeCCCC-----CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 241 PMDEKRATAFGLMKIDEEG-----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g-----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
+. ++.+.||++..|++. +|.+|.|||.......+ .....+++++|+|+|+++.|.+.+++
T Consensus 144 p~--~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 144 PT--RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred ec--CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHHHHHH
Confidence 74 346899999998653 89999999987654322 12245789999999999888777776
Q ss_pred hCCCC-------------CC---ccccchHh---------hhhCCceEEEEEecceEEeCCCHHH
Q 010006 316 KFPGA-------------ND---FGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEA 355 (520)
Q Consensus 316 ~~~~~-------------~~---~~~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~d 355 (520)
..|.. .+ +..+.++. ++++..++.+++.+..|-|+|+..+
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 209 HAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 54421 01 11223332 3444667899999999999999764
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=213.04 Aligned_cols=222 Identities=24% Similarity=0.351 Sum_probs=172.7
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++++|+++++.+++.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999996 689999999987 99999999999999999999999988888888765 1 1 2
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRATA 249 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~ 249 (520)
.++.. .+ ..|+++++++++.+++. ..++|++++||+ ++ ..++.++++.|.+.++++++.+.+.. ++..
T Consensus 65 ~~~~~----~~---~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~p~~ 134 (229)
T cd02540 65 EFVLQ----EE---QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTG 134 (229)
T ss_pred EEEEC----CC---CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCC
Confidence 22221 11 27999999999988853 247899999999 44 46799999999887778877776654 4567
Q ss_pred eEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCcccc
Q 010006 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (520)
Q Consensus 250 ~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~~~d 326 (520)
|+.+..|++|+|..+.||+....... ..+..++|+|+|+++.|.++++.... ....+..+
T Consensus 135 ~~~~~~~~~~~v~~~~ek~~~~~~~~-----------------~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 135 YGRIIRDGNGKVLRIVEEKDATEEEK-----------------AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ccEEEEcCCCCEEEEEECCCCChHHH-----------------hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 88888887799999999875321110 02478999999999877767765322 13345689
Q ss_pred chHhhhhCCceEEEEEecce--EEeCCCHHHH
Q 010006 327 VIPGATSIGMRVQAYLYDGY--WEDIGTIEAF 356 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~--w~dI~t~~dy 356 (520)
+++.+++.+.+|+++.++|| |+.|+|+.++
T Consensus 198 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 198 IIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99999987889999999875 7888898764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=217.37 Aligned_cols=204 Identities=19% Similarity=0.306 Sum_probs=156.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.+... .. .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~--~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLS--SK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccccc--CC-c
Confidence 5899999999999999999999999999987 999999999999999999999999999999999886532111 01 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHH--HHhcCCcEEEEEEecCccc-
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA--HRETDADITVAALPMDEKR- 246 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~--h~~~~a~~tl~~~~~~~~~- 246 (520)
.+.+....+ ....|++++++.++.++. ++|++++||++++.++.++++. +...++++++++.......
T Consensus 77 ~v~~~~~~~-----~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 147 (216)
T cd02507 77 IVDVITSDL-----CESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVS 147 (216)
T ss_pred eEEEEEccC-----CCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCC
Confidence 133332222 124899999999988774 6899999999999999999975 4455666666665543222
Q ss_pred ------CcceEEEEeCCC---CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 247 ------ATAFGLMKIDEE---GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 247 ------~~~~g~v~~d~~---g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
+..++++.+|++ .++..+.+++.... .+.+++.++...+. ...++++.++|||+|++++|
T Consensus 148 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 567889999987 57888888776532 33356777776654 34567899999999998764
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-24 Score=226.18 Aligned_cols=241 Identities=20% Similarity=0.308 Sum_probs=170.1
Q ss_pred eEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCcC
Q 010006 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (520)
|.+||||||.||||+|||+. +||+|+|+.|++|||+|+++.|...++++++|+++.... .+.+.+.. +..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~~~------- 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-IGK------- 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-cCC-------
Confidence 57999999999999999997 899999998755999999999999999999999975443 34444443 110
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc--CcceEEEEeCceecc--ccHHHHHHHH---HhcCCcEEEEEE
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLYR--MDYERFIQAH---RETDADITVAAL 240 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~l~~--~dl~~ll~~h---~~~~a~~tl~~~ 240 (520)
....++.. +. ..||++++..+..++... .++.++|++||+++. .+|.++++.+ .+.++.+|+...
T Consensus 73 -~~~~~i~E---p~----~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 73 -LASNIILE---PV----GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred -CcceEEec---cc----ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 10112211 11 278999998877666332 234589999998664 3488888765 344555666665
Q ss_pred ecCcccCcceEEEEeCC------CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 241 PMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+ .++.+.||++..|+ .++|..|.|||....+..+ .....+++++|||+|+++.|.+.++
T Consensus 145 p--~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 145 P--THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred C--CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHH
Confidence 4 34568999999873 2589999999987654322 1223579999999999877766665
Q ss_pred hhCCC-------------CC----CccccchH---------hhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 315 DKFPG-------------AN----DFGSEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 315 ~~~~~-------------~~----~~~~dil~---------~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
+..|. .. .+..++++ .++++..++++++.+..|.|+|+++++++...
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 210 KHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 54331 00 11134444 34555678999999999999999999988754
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=207.33 Aligned_cols=201 Identities=22% Similarity=0.349 Sum_probs=152.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+. .|.. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~-~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSF-PLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhc-cccc----Cc
Confidence 6899999999999999999999999999986 99999999999999999999999755 5577777652 1211 00
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcc---
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK--- 245 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~--- 245 (520)
....+. .. ++...|++++++.++..+. ++|++++||.+++.++.++++.|++.++.+|+++.+....
T Consensus 75 ~~~~~~-~~-----~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~ 144 (214)
T cd04198 75 KLDEVT-IV-----LDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ 144 (214)
T ss_pred ceeEEE-ec-----CCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc
Confidence 111111 11 1224899999999987663 6899999999999999999999999999999998875421
Q ss_pred --------cCcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 246 --------RATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 246 --------~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
....+.++.+|++ +++..+.+... ..+...++..++...++ ...++++.++++|+|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 145 KGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1234667777765 78887765322 22345667777776664 34567899999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=199.82 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=161.6
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.++++++|+|+++ .+.+.+++.+ +.
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~~-------- 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-FG-------- 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-cC--------
Confidence 35889999999999995 6999999997 99999999999999999999885 3566666654 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc-
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE- 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~- 244 (520)
+.++...+ .+..|+++.. .+...++....+.+++++||+ +++ ..+.++++.|.+.+.++++++.+..+
T Consensus 63 ---~~v~~~~~-----~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~ 133 (245)
T PRK05450 63 ---GEVVMTSP-----DHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDA 133 (245)
T ss_pred ---CEEEECCC-----cCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCH
Confidence 22222111 1235665433 344333211236799999999 665 45999999988776777776666522
Q ss_pred ---ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 245 ---~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
.++..++++ +|++|+|++|.|||........ + .....+++.++|+|+|+++++..+.+. .+...
T Consensus 134 ~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~-~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~ 200 (245)
T PRK05450 134 EEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------A-DSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPL 200 (245)
T ss_pred HHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------c-cccCccccEEEEEEecCHHHHHHHHhC-CCCcc
Confidence 345567765 8888999999999854321000 0 000114689999999999999866542 22211
Q ss_pred Ccc--ccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhc
Q 010006 322 DFG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 322 ~~~--~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~ 363 (520)
+.. .+.+ .+++.+.+++++.+++ +|.||||++||..|+..+
T Consensus 201 ~~~~~~~~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIESLEQL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchhHHHH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 111 1122 3556688999999996 999999999999998754
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=192.25 Aligned_cols=227 Identities=17% Similarity=0.271 Sum_probs=159.2
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ +.
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~-------- 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FG-------- 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cC--------
Confidence 3689999999999996 6999999987 9999999999998 99999998864 567777654 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~a~~tl~~~~~~~ 244 (520)
+.++...+ .+..|+++ +..++..+.. ..+.||+++||+ ++. .++..+++.|.+. +.++++++.+.++
T Consensus 63 ---~~~~~~~~-----~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 132 (239)
T cd02517 63 ---GKVVMTSP-----DHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISD 132 (239)
T ss_pred ---CEEEEcCc-----ccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCC
Confidence 22322111 12367764 6666655532 136799999998 554 5699999988766 6778888877643
Q ss_pred c----cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 245 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
. +...|+ +..|++|+|..|.+++.....+ +. .....+.++|+|+|++++|..+.+. ..
T Consensus 133 ~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~-~~-- 194 (239)
T cd02517 133 EEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL-PP-- 194 (239)
T ss_pred HHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC-CC--
Confidence 1 223344 4567779999998765432100 00 0013488999999999999866542 11
Q ss_pred CCc-cccchH--hhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 321 NDF-GSEVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 321 ~~~-~~dil~--~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
.++ ..+.++ .+++.+.+++++..+++|.||||++||.+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 195 SPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 112 123333 45666888999999999999999999999874
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-22 Score=187.95 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=147.7
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEe-ccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~-~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+.|+|||||||.|+||+| ..||||+.++|+ ++|+|+|++|.+.|+++++||+ +++.+.+..++.+ |++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCcc----
Confidence 4679999999999999998 899999999986 9999999999999999999999 8888888888877 3321
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..++.... .+ ..+++.+|+.+++.+. +.|++++||++|... ++.+++. ... ++.+...+.
T Consensus 72 -----~~iv~N~~--y~---ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a----~~~-~li~d~~~~ 132 (239)
T COG1213 72 -----AKIVINSD--YE---KTNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEA----PGE-GLIVDRRPR 132 (239)
T ss_pred -----eEEEeCCC--cc---cCCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEEecccc
Confidence 22332111 11 1456899999998876 479999999999988 5555543 122 223322211
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
.....-.....+++|++..+..+-.. .+..++|++.|+++++..+.+- ......+
T Consensus 133 ~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~-~~e~~~~- 187 (239)
T COG1213 133 YVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYEL-LVERSEY- 187 (239)
T ss_pred ccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHH-HhhhhhH-
Confidence 11111112234568999988755442 2367899999999887644321 1111111
Q ss_pred ccchHhhhh-CCceEEEEE--e-cceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATS-IGMRVQAYL--Y-DGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~-~~~~v~a~~--~-~g~w~dI~t~~dy~~An~~~l 364 (520)
.+.+... .+.+..-+. + ...|.||+||+|+.++...+.
T Consensus 188 --~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 188 --DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred --HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 1122222 112222111 2 247999999999999988654
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=183.49 Aligned_cols=226 Identities=16% Similarity=0.277 Sum_probs=154.5
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 5789999999999995 4999999997 9999999999998 89999999853 667777764 21
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCC-cEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDA-DITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a-~~tl~~~~~~~ 244 (520)
++++...+ .+..|++ .+..++..++ .+.|+++.||+ +. ..++.++++.+.+.+. ++++++.+.+.
T Consensus 64 ---~~v~~~~~-----~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PRK13368 64 ---GKVVMTSD-----DHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST 131 (238)
T ss_pred ---CeEEecCc-----cCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC
Confidence 12221111 1125665 5666665552 47899999998 44 5679999998876543 55555555432
Q ss_pred c----cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 245 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
. ++..+++ .++++|++..+.++|....... ....++.++|+|+|++++|..+ +...+..
T Consensus 132 ~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~~~~~~ 194 (238)
T PRK13368 132 EEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQLPETP 194 (238)
T ss_pred HHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-HcCCCCh
Confidence 1 1344544 4456789999987653211000 0013478999999999999853 3211111
Q ss_pred C-Cccc-cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhh
Q 010006 321 N-DFGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (520)
Q Consensus 321 ~-~~~~-dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~ 362 (520)
. .+.. +++ .+++.+.+++++..+++|+||||++||..++..
T Consensus 195 ~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 195 LEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred hhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1 1222 555 566558889999999999999999999998763
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=199.36 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=167.8
Q ss_pred ceEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 166 (520)
+|.+||||||.||||+|+|+. .||+|+|+.|++|||+++++.+...++.+.+||++.+.. .+.+.+... + . .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~-~----~-~ 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL-N----K-L 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc-C----C-c
Confidence 489999999999999999998 799999997767999999999999888888888876543 344455441 0 0 0
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcC---cceEEEEeCceecccc--HHHHHHHHH---hcCCcEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVA 238 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~a~~tl~ 238 (520)
. ..++. +|.. .+|+.++..+..++.... +.-++++++|+++... |.+.++... +.+..+|+.
T Consensus 79 ~---~~ii~---EP~~----rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 79 T---ENIIL---EPAG----RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred c---ccEEe---cCCC----CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 0 11221 1222 678988887766665431 3468899999976532 555544332 235556666
Q ss_pred EEecCcccCcceEEEEeCCC---------CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHH
Q 010006 239 ALPMDEKRATAFGLMKIDEE---------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (520)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~---------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (520)
..| ..+.+.||++..++. .+|.+|.|||+...+..+. ....|+|++|||+|+.+.+
T Consensus 149 I~P--t~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVP--DLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCC--CCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHHHH
Confidence 665 446789999987642 2799999999998776542 3456899999999999887
Q ss_pred HHHHhhhCCCC--------------CCc--c-ccchHh---------hhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 310 LNLLRDKFPGA--------------NDF--G-SEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 310 ~~ll~~~~~~~--------------~~~--~-~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
.+.++++.|.. .++ . .+.++. ++++..++.+.+.+-.|-|+|+..++++...
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~~ 291 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISA 291 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhhc
Confidence 76666554410 011 0 122222 2333556888999888999999999988653
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=179.73 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=171.0
Q ss_pred ceEEEEEeCCCCCCCCccccC-CCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhH-HHHHHHHhhhccCCCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSAS-LNRHLSRAYASNMGGY 165 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~-~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~~ 165 (520)
+|++||||||.|||||||++. .||++|++.|...|++.+++.+.. .+.++++|||+.+... +.+.+.+- +..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~-----~~~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI-----DIE 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh-----hhc
Confidence 378999999999999999865 999999997767999999999998 6789999999866543 34455441 000
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhh-cCcceEEEEeCceecccc--HHHHHHHHH---hcCCcEEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVAA 239 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~a~~tl~~ 239 (520)
...+ + ++ +|.. ..|+-++..+.-.+.. .++.-++|++.||++... +.+.++... +.+..+|+..
T Consensus 76 ~~~~-i-ll----EP~g----RnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI 145 (333)
T COG0836 76 NAAG-I-IL----EPEG----RNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGI 145 (333)
T ss_pred cccc-e-Ee----ccCC----CCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 0011 1 22 1233 5689998877655443 333458899999976543 665555432 3455666666
Q ss_pred EecCcccCcceEEEEeCCC------CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHH
Q 010006 240 LPMDEKRATAFGLMKIDEE------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (520)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (520)
.| ..+++.||+++..+. .+|.+|.|||+...++.+. ..+.|++++|+|+|+...+.+.+
T Consensus 146 ~P--t~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 146 PP--TRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred CC--CCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHH
Confidence 65 446799999988542 3799999999998876553 34568999999999998777666
Q ss_pred hhhCCC-----------CCCc--c---ccc--------hHh-hhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 314 RDKFPG-----------ANDF--G---SEV--------IPG-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 314 ~~~~~~-----------~~~~--~---~di--------l~~-li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
+.+.|. ..++ . .+. +.. +.++..++.+++.+-.|-|+|+...+++....-
T Consensus 211 ~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 211 KKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 655442 1011 0 111 111 234467899999998999999999998876543
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=154.24 Aligned_cols=218 Identities=13% Similarity=0.167 Sum_probs=148.2
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.++||.+|+||+|+.++++ +||.+.|+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999997 99999999999999999999999998876 67877664
Q ss_pred eEEEee-cccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLA-AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~-~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
|.++. +... .-....++..++++++ +..++.+|..+..++ ...+. ..+--. .+.. ...+
T Consensus 69 -vtLvyN~kY~------~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~~-~~S~Yf-av~~---~~~t 128 (231)
T COG4750 69 -VTLVYNPKYR------EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTKE-SHSKYF-AVYR---SGKT 128 (231)
T ss_pred -eEEEeCchHH------hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcCc-ccceEE-EEEe---cCCC
Confidence 33332 1110 1346789999999987 467889998665552 11111 111111 1111 1234
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHH---HHHhhhCC---CCCC
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML---NLLRDKFP---GAND 322 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~---~ll~~~~~---~~~~ 322 (520)
+-.++..+.+|+|+++.-... .....+|+..|++..-. .+++...- ...-
T Consensus 129 nEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~ 184 (231)
T COG4750 129 NEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKL 184 (231)
T ss_pred ceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhH
Confidence 455677888999998863222 23667899999865433 34443321 1111
Q ss_pred ccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
+-.++...-++ ...+++-.+++ -.++++++++|.+....++
T Consensus 185 yWd~v~~~ni~-~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 185 YWDTVPMENIK-ELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred HHHHHHHHHHH-HHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 22444545555 55666666654 5899999999987766543
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-17 Score=163.08 Aligned_cols=235 Identities=16% Similarity=0.188 Sum_probs=157.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+|| +++.+++.+++.+ ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~-~~-------- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG-FG-------- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH-cC--------
Confidence 46889999999999996 4999999997 999999999998765444333 3567788777754 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEE--EEEecC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITV--AALPMD 243 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl--~~~~~~ 243 (520)
++++...+ . +..|++++ ..++..++. ..+.++++.||. +.. ..+.++++.+.+. .++++ ++.+..
T Consensus 109 ---v~vi~~~~--~---~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~ 177 (293)
T PLN02917 109 ---ADVIMTSE--S---CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK 177 (293)
T ss_pred ---CEEEeCCc--c---cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecC
Confidence 22221111 1 12566555 677777752 247899999999 565 4599999988654 33333 333334
Q ss_pred cccCcceEEEE--eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---
Q 010006 244 EKRATAFGLMK--IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--- 318 (520)
Q Consensus 244 ~~~~~~~g~v~--~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--- 318 (520)
.+++.+||.++ .|++|++..|..++-.+..+. ++ ......+.++|||.|+.+.|. .+.+-.+
T Consensus 178 ~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~ 244 (293)
T PLN02917 178 PEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELPPTPL 244 (293)
T ss_pred HHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCCCCcc
Confidence 45678899886 677788777764422111000 00 011235889999999999998 5443211
Q ss_pred CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 319 ~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
....+.+|+. +++.|.++.++..+....-|||++|+..++..+..
T Consensus 245 e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 245 QLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred cchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 2234456665 55669999999887667799999999999887643
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=145.60 Aligned_cols=219 Identities=21% Similarity=0.223 Sum_probs=147.0
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccCh-hHHHHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (520)
|+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 457899999999999995 3479999999997 99999999999865 899999998665 3333322110
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~ 242 (520)
...+.++. .+ .+.+++++.++..+++ .+.++++.||. +++. .+.++++.+.+.+ .++.+.+.
T Consensus 70 ---~~~~~~~~-----~~----~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (227)
T PRK00155 70 ---DPKVTVVA-----GG----AERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV 133 (227)
T ss_pred ---CCceEEeC-----Cc----chHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec
Confidence 01122221 11 3468999999887742 46899999999 6654 4999999886653 33444443
Q ss_pred CcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
.+ .+.. ++++|.+.++ +..... ...-+.|.|+.+.|.+++..... ...
T Consensus 134 ~~----~~~~--v~~~g~~~~~---~~r~~~----------------------~~~~~p~~f~~~~l~~~~~~~~~-~~~ 181 (227)
T PRK00155 134 KD----TIKR--SDDGGGIVDT---PDRSGL----------------------WAAQTPQGFRIELLREALARALA-EGK 181 (227)
T ss_pred cc----cEEE--EcCCCceeec---CChHHh----------------------eeeeCCccchHHHHHHHHHHHHh-cCC
Confidence 21 1222 2545666655 222111 22334889999999887764322 223
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+..|....+.+.+.++..+..+..+++|+|++||..+...+.
T Consensus 182 ~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 182 TITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 345555555556788988887777889999999999877553
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=144.72 Aligned_cols=211 Identities=19% Similarity=0.220 Sum_probs=145.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.|||||||.|+||+. ..||+|++++|+ |||+|+++++.++ ++++|+|+++++. +.+..++...
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~----------- 65 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR----------- 65 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------
Confidence 379999999999973 479999999997 9999999999998 7999999998654 3444333320
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
..++++.. + .+..++++.++..++ ..+.++++.||+ +++. .+..+++.+.+. ++++++.+..
T Consensus 66 ~~~~~~~~-----~----~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~--- 129 (217)
T TIGR00453 66 AVPKIVAG-----G----DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA--- 129 (217)
T ss_pred CcEEEeCC-----C----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc---
Confidence 01222211 1 234588998887762 247899999999 6664 488999987653 3444444432
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~d 326 (520)
.++..+|++|.++.+.++. .. +...+ .|.|+.+.|.+++...... ..+..|
T Consensus 130 ---~~v~~~~~~g~~~~~~~r~---~~---------------------~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d 180 (217)
T TIGR00453 130 ---DTLKRVEADGFIVETVDRE---GL---------------------WAAQT-PQAFRTELLKKALARAKEE-GFEITD 180 (217)
T ss_pred ---ceEEEEcCCCceeecCChH---He---------------------EEEeC-CCcccHHHHHHHHHHHHhc-CCCCCc
Confidence 2344556667787776521 11 13333 7899999998777532222 222356
Q ss_pred chHhhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
....+.+.+.++..+..+..+++|+|++||..+..
T Consensus 181 ~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 181 DASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred HHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 66666666889999888877889999999988764
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=144.52 Aligned_cols=213 Identities=19% Similarity=0.278 Sum_probs=145.8
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+.. +.. . .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~------~-~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGL------S-K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-ccc------C-C
Confidence 589999999999984 279999999997 99999999999976 899999998776554443321 110 0 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
.+.++.. + .+..++++.++..++....+.++++.||+ +++.+ +..+++.+.+.+ ..+...+...
T Consensus 70 ~~~~~~~-----~----~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~--- 135 (218)
T cd02516 70 VVKIVEG-----G----ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD--- 135 (218)
T ss_pred CeEEECC-----c----hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc---
Confidence 1222211 1 34578899999877422357899999999 66644 999999886544 3333333221
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
++...|++|.+.++.+. ... ....++ ++|+.+.|.+++...... ..+..|.
T Consensus 136 ---~~~~~~~~g~~~~~~~r---~~~---------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~ 186 (218)
T cd02516 136 ---TIKRVDDDGVVVETLDR---EKL---------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDD 186 (218)
T ss_pred ---cEEEecCCCceeecCCh---HHh---------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcH
Confidence 12335667888887653 111 144556 899999999887654332 2344666
Q ss_pred hHhhhhCCceEEEEEecceEEeCCCHHHHHH
Q 010006 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g~w~dI~t~~dy~~ 358 (520)
..-+.+.+.++..+..+..-+||+|++||..
T Consensus 187 ~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 187 ASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred HHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 6666666778888877666679999999954
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=140.72 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=143.1
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
+||+|+|.|+||. +|+|++++|+ |||+|+++++..+++++|+|++. .+.+.+++.+ +. +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~g-----------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-FG-----------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-cC-----------C
Confidence 7999999999995 6999999997 99999999999988999999885 3456655544 11 1
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcccC--
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRA-- 247 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~-- 247 (520)
+++...+ . ...| .+.+..+...+.....+.++++.||. +.+.+ +.++++.+.+...+++.++.+..+...
T Consensus 61 ~~v~~~~--~---~~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 61 EVCMTSK--H---HNSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred EEEEeCC--C---CCCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 2221111 1 1134 34555554443211246789999999 66654 899999886656777777777543111
Q ss_pred -cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc-c
Q 010006 248 -TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-S 325 (520)
Q Consensus 248 -~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~-~ 325 (520)
.+...+..|.+|+...|...+.......+. ...+|+. ..++...|+|.|++++|.++...........+ -
T Consensus 135 ~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-----~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~l 206 (238)
T TIGR00466 135 NPNAVKVVLDSQGYALYFSRSLIPFDRDFFA-----KRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKL 206 (238)
T ss_pred CCCceEEEeCCCCeEEEecCCCCCCCCCccc-----ccccccc---cceeEEEEEEeCCHHHHHHHHhCCCCcccccchh
Confidence 123334446678877776543211100000 0011111 13577899999999999977653221111111 1
Q ss_pred cchHhhhhCCceEEEEEecce-EEeCCCHHHH
Q 010006 326 EVIPGATSIGMRVQAYLYDGY-WEDIGTIEAF 356 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~-w~dI~t~~dy 356 (520)
|-|. +++.|++|++...+.. -..|||++|+
T Consensus 207 eqlr-~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 207 EQLR-VLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HHHh-hhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 2233 3445999999998765 4699999997
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=151.06 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=144.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++...+.+.+...+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 677899999999999995 3589999999987 99999999999987 79999999876554433322211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
..+.++. .+ .+..++++.++..+++ +.+++..||. +++.+ +..+++...+ .++++...++.
T Consensus 72 ---~~v~~v~-----gG----~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv~ 134 (378)
T PRK09382 72 ---KFVTLVT-----GG----ATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPVA 134 (378)
T ss_pred ---CeEEEeC-----CC----chHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEec
Confidence 1122221 11 3467899999988753 6899999998 66655 7888887654 35667777754
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ ...|+...+|. ..+..+ ++|+... .+.+.+..+ ...+
T Consensus 135 D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~~~~- 172 (378)
T PRK09382 135 D--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----GRGD- 172 (378)
T ss_pred c--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----CCCC-
Confidence 3 45565445553 355444 6665432 222222221 1122
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
.+|..+.+...|.+|.++..+..|.+|.+|+||..++..+.
T Consensus 173 ~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 173 FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 36777777777999999999999999999999999987654
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=134.54 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=143.4
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (520)
++.+||||||.|+||+ ...||+|++++|+ |||+|+++++..+ .+++|+|+++... ..+.+.+.+ +.+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCcC-----
Confidence 4789999999999997 3479999999997 9999999999875 4899999997543 223333433 2210
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
...++++. .+ .+..++++.++..+++ .+.++++.||. +.+.+ +.++++.+.+.++. +.+.+..
T Consensus 72 -~~~~~~v~-----~g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~- 136 (230)
T PRK13385 72 -DQRVEVVK-----GG----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVK- 136 (230)
T ss_pred -CCceEEcC-----CC----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEecc-
Confidence 01123321 11 2345899999887753 35688889999 66655 88999988765433 3333322
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
+ .++...++.+....+ .... +..-+.|.|+.+.|.+..+..... ..+.
T Consensus 137 ----d--ti~~~~~~~~~~~i~---r~~~----------------------~~~qtpq~f~~~~l~~~~~~~~~~-~~~~ 184 (230)
T PRK13385 137 ----D--TVKRVKDKQVIETVD---RNEL----------------------WQGQTPQAFELKILQKAHRLASEQ-QFLG 184 (230)
T ss_pred ----c--eEEEEcCCeeEeccC---HHHH----------------------hhhcCCceeeHHHHHHHHHHHHhc-CCCc
Confidence 1 122222354433322 2111 223458899998888776632212 2234
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+|....+.+.+.++..++-+...+.|+|++|+..|...+.
T Consensus 185 td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 5655555556889999988888999999999999977653
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-13 Score=131.33 Aligned_cols=214 Identities=21% Similarity=0.279 Sum_probs=136.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.+ +..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~~~------- 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-YGA------- 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-hCC-------
Confidence 3679999999999995 4999999997 99999999999987 78888776 44556555543 110
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc--CcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
. +.+........+ ..|+.++++.++..++.. ..+.++++.||+ +.. .++.++++.+.+.+++.++.+.+..
T Consensus 64 -~-~~~~~~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 64 -E-VPFLRPAELATD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred -C-ceeeCChHHCCC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 0 111111000011 147889999999877532 136899999999 444 5699999998877778777766643
Q ss_pred cccCcceEEEEeCCCC-CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 244 EKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g-~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
+ ...++.. .+++| .+..+.++....... ....+..++|+|+++++.+.+.. .
T Consensus 139 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~q~----------------~~~~~~~n~~~y~~~~~~~~~~~-------~- 191 (223)
T cd02513 139 R--FPWRALG-LDDNGLEPVNYPEDKRTRRQD----------------LPPAYHENGAIYIAKREALLESN-------S- 191 (223)
T ss_pred c--CcHHhee-eccCCceeccCcccccCCcCC----------------ChhHeeECCEEEEEEHHHHHhcC-------C-
Confidence 2 2223222 22223 222221111100000 00124667899999998775311 1
Q ss_pred ccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhh
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANL 361 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~ 361 (520)
+ -+.++..+..+. .-.||+|++||..+..
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 1 167888887775 5899999999988754
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=132.52 Aligned_cols=121 Identities=24% Similarity=0.338 Sum_probs=94.5
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999998 49999999987 999999999999999999999987 4555555331 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAAL 240 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~ 240 (520)
+++.. +.|..|++++++.++..+. ..++|++++||+ +++. .+..+++.+.+.++++++...
T Consensus 61 ~~v~~------~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVD------PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-------STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEe------ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33322 2234899999999998773 358999999999 4454 499999998877787765554
|
... |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=133.58 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=96.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..++.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999997 9999999999999999999999988888888876521
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEe
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALP 241 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 241 (520)
..+.. . +..|...++..++..+. ..++|++++||+ +.. ..+..+++.+...+..+..++.+
T Consensus 65 -~~~~~--~------~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN--A------SGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe--c------CCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 1 12678888888886543 247899999999 444 55999999887666555444443
|
At this time this gene appears to be present only in Archea |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=129.57 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=88.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeE
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (520)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|+++++.+++.+.+...+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~----------~-v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS----------N-I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC----------C-e
Confidence 7999999999998 58999999987 9999999999998999999999987766544433211 1 3
Q ss_pred EEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcE
Q 010006 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (520)
Q Consensus 172 ~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~ 235 (520)
.++. ++.|..|+.++++.++.+ . ...+.+++++||+ ++. ..+..+++.+...+.++
T Consensus 65 ~~v~------~~~~~~g~~~si~~~l~~-~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVH------NPQYAEGQSSSIKLGLEL-P-VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEE------CcChhcCHHHHHHHHhcC-C-CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 3332 122346889999998862 1 1247899999999 555 45888988876555443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.5e-14 Score=137.76 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=55.2
Q ss_pred ccccccCCCc-ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCc
Q 010006 447 RRFLAAKGSV-PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 518 (520)
Q Consensus 447 ~~~~~~~~~~-~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gt 518 (520)
.+|.|+++++ .+.||++++|. .+.|++||+||++|.|.+++++.+.+.+|++|.|+... ..|++++.|.+.+
T Consensus 213 anT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~ 291 (338)
T COG1044 213 ANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARS 291 (338)
T ss_pred ccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccc
Confidence 4566666644 45677777776 47889999999999999999999999999999999872 4466666665544
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=127.66 Aligned_cols=119 Identities=14% Similarity=0.258 Sum_probs=93.5
Q ss_pred CccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCC
Q 010006 378 APIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 455 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 455 (520)
..+...+.+.+.+.+. .+++||++|.|++ +.|. +++||++|.|++++.|.+++++++
T Consensus 18 v~ig~~~~I~~~a~i~----~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~----------------- 76 (163)
T cd05636 18 VWIGEGAIVRSGAYIE----GPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG----------------- 76 (163)
T ss_pred eEEcCCCEECCCCEEe----CCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-----------------
Confidence 3444444444444432 4688999999987 8887 699999999999999998888765
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEec------------------------CCCcCCcccccCCeEEccCeEEEcCC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVN------------------------SDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~------------------------~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
+.|++++.+.+++|+++++|++++.+.+ ..-+++.++++.++.|.++ ++||++
T Consensus 77 --~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~ 153 (163)
T cd05636 77 --TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPG 153 (163)
T ss_pred --CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCC
Confidence 5899999999999999999999999865 2455666667777777777 889999
Q ss_pred CEeCCCccC
Q 010006 512 ALIPSGTII 520 (520)
Q Consensus 512 ~~i~~gtvi 520 (520)
++|++|++|
T Consensus 154 ~~i~agsvV 162 (163)
T cd05636 154 SWVYPGCVV 162 (163)
T ss_pred CEECCCcEe
Confidence 999999875
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-14 Score=138.05 Aligned_cols=96 Identities=24% Similarity=0.208 Sum_probs=53.9
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCC---ccccCCC-ccccCCCcCCCceeecccccce
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF---SFYDRSA-PIYTQPRYLPPSKMLDADVTDS 400 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~---~~~~~~~-~i~~~~~~~~~~~i~~~~i~~~ 400 (520)
.|.++.+++.+ ++.++|||.|+ ++|+++|..++....... ....+.. .+...+.+.|.+.+. .++
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~----g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR----DQV 99 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----CCe
Confidence 68888888744 88999999999 999999999987642100 0111111 112222333333332 345
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
.||++|.|+. +.|. +++||++|.|++++.|.
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~ 132 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLG 132 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccC
Confidence 5555555554 4443 45555555555555443
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=121.46 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=132.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
+.++.+||||||.|+||+ .+|.|+|+.|+ |+++++++...++++++++||+++...+....+...
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 356899999999999999 89999999997 999999999999999999999998733322222221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..+.++ .+++|.+|.+.|++.++..+.... +.++++.||+ +...++.++++.++..+ . ...+
T Consensus 68 --~~~~~v------~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p--- 131 (199)
T COG2068 68 --LGVTVV------VNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRP--- 131 (199)
T ss_pred --CCeEEE------eCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeee---
Confidence 113333 356778999999999998876422 5899999999 44567999999887652 2 1111
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
.| .|. . .+-.+|+++.|.++.+ .+ .|
T Consensus 132 ----~~-------~g~-------r------------------------------G~Pv~~~~~~~~~l~~--l~--GD-- 157 (199)
T COG2068 132 ----VY-------GGA-------R------------------------------GHPVLLSKDLFPALAR--LS--GD-- 157 (199)
T ss_pred ----ec-------cCC-------c------------------------------CCceeechhHHHHHhh--cC--Cc--
Confidence 11 010 0 1122567777765433 11 11
Q ss_pred ccchHhhhh-CCceEEEEEe-cceEEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATS-IGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~-~~~~v~a~~~-~g~w~dI~t~~dy~~An~~~l 364 (520)
.-...+++ .+..+..+.. .+.-.|||||+||..++..+.
T Consensus 158 -~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 -VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 11344444 2445555555 578999999999999987653
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=127.54 Aligned_cols=122 Identities=24% Similarity=0.275 Sum_probs=76.6
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC-Ccccccccc-ccccccCCCcceeeCCCCEEcceEE
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRAII 471 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~~~ii 471 (520)
+.|.++.|+++|.|+. +.+.+++||+++.|++++.|.....++ +.......+ +++.+++++ .|++.+.+.+++|
T Consensus 46 ~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~---~i~~~~~i~~~~I 122 (193)
T cd03353 46 CVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS---KANHLSYLGDAEI 122 (193)
T ss_pred cEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCC---EecccceecccEE
Confidence 3444556666666665 666666666666666666665333222 221111111 345566665 5667777778899
Q ss_pred CCCCEECCCcEEecCCC-------cCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 472 DKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 472 ~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++++.||+++.+.+.++ +++.++++.++.|.++ ++||++++|++|++|
T Consensus 123 g~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 123 GEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred CCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 99999999998877554 3444555555555555 889999999999875
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=125.44 Aligned_cols=121 Identities=24% Similarity=0.387 Sum_probs=91.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|+++++...+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~----------~ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L----------P 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C----------C
Confidence 4689999999999985 9999999987 99999999999999999999998876655444322 0 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~ 235 (520)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+ +++ ..+..+++.+...++++
T Consensus 64 -~~~~~~------~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVIN------PDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeC------CChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 222221 12237899999999987752 357899999999 555 45888888876555544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=136.13 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
||+++.|. .+.|++|++||++|.|.+++++....++|++++|+.+. ++||++++|+++++|
T Consensus 220 Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 220 IGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 44444554 46778888888999888888888888888888887662 678888888888764
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-12 Score=124.01 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=139.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHH-HHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASL-NRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~ 164 (520)
++++.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.. .++++|+|+++++.... ...+.+ +.
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~~----- 91 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-ID----- 91 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-cC-----
Confidence 456889999999999997 3579999999997 999999999998 48999999998764333 333322 11
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCc--e-ecccc-HHHHHHHHHhcCCcEEEEEE
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGD--H-LYRMD-YERFIQAHRETDADITVAAL 240 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD--~-l~~~d-l~~ll~~h~~~~a~~tl~~~ 240 (520)
.. +.+.. .+ .+..++++.++..++. +..+|+.+| . +...+ +..+++...+.+ ..+...
T Consensus 92 ---~~-i~~v~-----gg----~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~ 153 (252)
T PLN02728 92 ---VP-LKFAL-----PG----KERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGV 153 (252)
T ss_pred ---Cc-eEEcC-----CC----CchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEee
Confidence 01 22211 11 2356889999987752 234455566 4 66655 788888776654 335555
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+..+ - +...++++.|. +.+..... +..-.-..|+.+.|.+.++....+.
T Consensus 154 ~~~d-----t-ik~v~~~~~v~---~t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~~~~~ 202 (252)
T PLN02728 154 PVKA-----T-IKEANSDSFVV---KTLDRKRL----------------------WEMQTPQVIKPELLRRGFELVEREG 202 (252)
T ss_pred cchh-----h-EEEecCCCcee---eccChHHe----------------------EEEeCCccchHHHHHHHHHHHHhcC
Confidence 5322 1 12234445443 33444432 2222234677777776665432222
Q ss_pred CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
...+|....+...|.+|..+.-+..-+-|.||+|+..+...+.
T Consensus 203 -~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 203 -LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred -CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 2235555555556888888777777899999999998887554
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=133.72 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=73.0
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.++++++.+...+.+.|.+.+. .++.||++|.|++ |.|. ++.||++|.|+++|.|.. .+.++
T Consensus 6 a~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG 81 (254)
T cd03351 6 AIVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIG 81 (254)
T ss_pred CEECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEEC
Confidence 3455555565555555555543 3455666666665 5555 466666666666665542 22222
Q ss_pred -CccccccccccccccCCCc----ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----E
Q 010006 438 -ADYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 506 (520)
Q Consensus 438 -~~~~~~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v 506 (520)
++.... .+.+..+.. .+.||+++.|. ++.|++++.||++|.|.+...+.+.+.+++++.|+.+. +
T Consensus 82 ~~~~Ig~----~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v 157 (254)
T cd03351 82 DNNTIRE----FVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFC 157 (254)
T ss_pred CCCEECC----ccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCc
Confidence 111111 111111100 14555555554 45555555555555555555555555555555555441 7
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+||++++|+++++|
T Consensus 158 ~Ig~~~~Ig~~s~V 171 (254)
T cd03351 158 RIGRHAMVGGGSGV 171 (254)
T ss_pred EECCCCEECcCCEE
Confidence 78888888888764
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=121.06 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=83.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++.+.+.+ .. +.
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~~------- 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-FG------- 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-cC-------
Confidence 567999999999999995 279999999987 99999999998 67999999987543322 11 00
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHh
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (520)
+.++.... .+..|+.++++.++...+ .+.+++++||+ +++.+ +..+++.+.+
T Consensus 63 ----~~~v~~~~-----~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ----LPVIPDSL-----ADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ----CcEEeCCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 12222110 112688899998887543 47899999999 66654 8888876543
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-11 Score=120.24 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=140.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
|||+|+|.++||. .|.++|++|+ |||.|+++.+.+++ +++|+|.+ +.+++.+...+ +.. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~g~--------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-YGA--------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-cCC--------E-
Confidence 7999999999995 4999999997 99999999999987 67777755 34556555443 211 0
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhh-cCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.+...... ..+..|+.+++..++..++. ...+.++++.+|. +.. .++..+++.+.+.+++..+.+.+...++
T Consensus 63 v~~~r~~~l---~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~- 138 (222)
T TIGR03584 63 VPFLRPKEL---ADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPI- 138 (222)
T ss_pred eEEeChHHH---cCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCCh-
Confidence 111111110 11136888999999987753 2247799999999 555 5699999999887788777776643222
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~di 327 (520)
+.....+++|++..+......... +. ....|..+.++|+++++.|.+ ...+.
T Consensus 139 --~~~~~~~~~g~~~~~~~~~~~~~r--------------Qd-~~~~y~~nga~y~~~~~~~~~--------~~~~~--- 190 (222)
T TIGR03584 139 --QRAFKLKENGGVEMFFPEHFNTRS--------------QD-LEEAYHDAGQFYWGKSQAWLE--------SGPIF--- 190 (222)
T ss_pred --HHheEECCCCcEEecCCCcccCCC--------------CC-CchheeeCCeEEEEEHHHHHh--------cCCcc---
Confidence 112244556776665422111000 00 112356789999999987652 11111
Q ss_pred hHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhh
Q 010006 328 IPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (520)
Q Consensus 328 l~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~ 362 (520)
+.++..|..+. ..+||||++|+..|...
T Consensus 191 -------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 -------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred -------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 56778887775 58999999999988664
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-13 Score=131.67 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=87.8
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.+++|.+.|..++.+.|.+.+. .++.||++|.|+. +.|. ++.||++|.|++++.|.. .+.++
T Consensus 9 a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 9 AIVEPGAKIGENVEIGPFCVIG----PNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred CEECCCCEECCCCEECCCeEEC----CCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 4566666666666666666554 4677788888876 6666 677777777777777754 23333
Q ss_pred C-ccccccccccccccCCCc----ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----E
Q 010006 438 A-DYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 506 (520)
Q Consensus 438 ~-~~~~~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v 506 (520)
+ +.... ++.|..+.+ .+.||+++.|. ++.|+++|.||+++.+.+.+.+.++.+++++++|+.+. +
T Consensus 85 ~~~~I~e----~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v 160 (262)
T PRK05289 85 DNNTIRE----FVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFV 160 (262)
T ss_pred CCCEECC----CeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCC
Confidence 2 11111 111111110 13566666664 56666677777777777776666777777777776552 6
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+||++++|++||+|
T Consensus 161 ~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 161 RIGAHAMVGGMSGV 174 (262)
T ss_pred EECCCCEEeeecce
Confidence 78888888888875
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=130.27 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=36.5
Q ss_pred eeCCCCEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 459 GIGKNSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|+++++| ++|+|++++.|++++.+.....+++.+.++.++.|..+ ++||++++|+++++|
T Consensus 109 ~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 109 LLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeeeE
Confidence 34444444 34555555555555555555555555555555555555 788888888888865
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=123.25 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=110.5
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEccc-------------EE
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT-------------LL 435 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~-------------~i 435 (520)
..+++|.+.|..++.+.|.+.+. +++.|++|++|+. +.|+ .+.||++++|.+++.|+.- +|
T Consensus 9 TAiIe~gA~ig~~V~IGpf~iIg----~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 9 TAIIEPGAEIGEDVKIGPFCIIG----PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ceeeCCCCCcCCCCEECceEEEC----CCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 46677888888888888887775 6788999999998 8887 7899998866555555221 11
Q ss_pred ECCcccccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC-----eEE
Q 010006 436 MGADYYETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVT 507 (520)
Q Consensus 436 ~~~~~~~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v~ 507 (520)
.+++-..+.++ +.|.-|.|. +.||+++.+- .+.|.++|+||++|++.|...+..++.+++.++|+.. .|.
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~--T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGV--TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred CCCCeEeeEEEEeccccCCcee--EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 12222222222 455566666 7899999987 9999999999999999999999999999999999977 378
Q ss_pred EcCCCEeCCCccC
Q 010006 508 IIKDALIPSGTII 520 (520)
Q Consensus 508 Ig~~~~i~~gtvi 520 (520)
||+.+.||..|-|
T Consensus 163 IG~~amiGg~S~v 175 (260)
T COG1043 163 IGAHAMIGGLSAV 175 (260)
T ss_pred Ecchheecccccc
Confidence 9999999987753
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=128.05 Aligned_cols=142 Identities=22% Similarity=0.280 Sum_probs=94.2
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.+++|.+.|...+.+.|.+.+. .++.||++|.|+. +.|. ++.||++|.|++++.|.. .+.++
T Consensus 6 a~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 6 AVIDPSAKLGSGVEIGPFAVIG----ANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred CEECCCCEECCCCEECCCCEEC----CCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 4566667776677777766654 5677888888886 7666 677888887777777753 23333
Q ss_pred C-cccccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEE
Q 010006 438 A-DYYETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 508 (520)
Q Consensus 438 ~-~~~~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~I 508 (520)
+ +.....+. +.+..+. .+.||+++.|. ++.|+++|.||++|+|.+.+.+..+++++++++|+.+. +.|
T Consensus 82 ~~~~I~e~vtI~~gt~~g~---~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 82 DRNVIREGVTIHRGTKGGG---VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred CceEECCccEEecCcccCC---cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 2 11111111 1111111 14677777775 78888889999999998888888888888888888772 557
Q ss_pred cCCCEeCCCccC
Q 010006 509 IKDALIPSGTII 520 (520)
Q Consensus 509 g~~~~i~~gtvi 520 (520)
|++++|++|++|
T Consensus 159 G~~a~Vg~gs~V 170 (255)
T PRK12461 159 GALAMMAGGSRI 170 (255)
T ss_pred CCCcEECCCceE
Confidence 777777777754
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=114.56 Aligned_cols=234 Identities=16% Similarity=0.185 Sum_probs=164.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++..+||+|-=.+|||. -|||-.|+|+ |||.|+.++..++|.++++|.| +++++.+++.+. +
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---------G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---------G 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh---------C
Confidence 56789999999999997 4999999997 9999999999999999999999 677888888771 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.--++.. .+...|| +.+..+...+.-..++.++=+.||. ++.. .+..+++...+.++++..++.+..++
T Consensus 64 --~~avmT~------~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ 134 (247)
T COG1212 64 --GEAVMTS------KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDE 134 (247)
T ss_pred --CEEEecC------CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCH
Confidence 1112211 1112566 7777777666543456677889999 6654 48888888887778877666665432
Q ss_pred c---CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 246 R---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 246 ~---~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
. ..+--.+..|.+|+-..|...|-+...+. . ...+++.-.|||.|++.+|.++....-....
T Consensus 135 ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE- 199 (247)
T COG1212 135 EEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSPLE- 199 (247)
T ss_pred HHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCchhH-
Confidence 1 12333455788899999987665432111 0 0135678899999999999887653211111
Q ss_pred ccccchHhh--hhCCceEEEEEecceE-EeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGA--TSIGMRVQAYLYDGYW-EDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~l--i~~~~~v~a~~~~g~w-~dI~t~~dy~~An~~~l 364 (520)
..+-|.+| ++.|++|.+...+..- ..+||++||.++...+.
T Consensus 200 -~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 200 -KIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -HHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 02334443 4569999999998654 99999999999887654
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=117.44 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=83.6
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
+.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +.....+..
T Consensus 4 ~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~~--------- 66 (200)
T PRK02726 4 VKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLPP--------- 66 (200)
T ss_pred cCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhccC---------
Confidence 3467899999999999997 48999999987 9999999999864 78998888632 222111110
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHH
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHR 229 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~ 229 (520)
. +.++. ++.|..|..++++.++..++ .+.+++++||+ ++..+ +..+++.+.
T Consensus 67 ---~-~~~i~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 ---G-CHWLR------EPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ---C-CeEec------CCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1 22332 22334799999999998775 37899999999 66655 777887754
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=119.48 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=89.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++++|+++++.+.+. .+.+... ....
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~-------~~~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLL-------ADER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhh-------cCCC
Confidence 58999999999998 48999999987 999999999888899999999987654321 1111100 0011
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++. +++|..|.+++++.++..+.....+.+++++||+ +++.+ +..+++.......++
T Consensus 68 ~~~~~------~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 68 IMLVC------CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred eEEEE------CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 22221 2344578999999999876433457899999999 66655 778888765544443
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=108.51 Aligned_cols=98 Identities=35% Similarity=0.581 Sum_probs=84.1
Q ss_pred cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 394 DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
++.+.+++||++|.|+++.|.+|+||++|.|+++|+|.+++++++ +.||+++.+++++|++
T Consensus 7 ~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~siig~ 67 (104)
T cd04651 7 RGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRRAIIDK 67 (104)
T ss_pred CCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEeEEECC
Confidence 445678999999999888899999999999999999999999876 5899999999999999
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
+++||+++++.+...... ..+.+..+++++|++++.+
T Consensus 68 ~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 68 NVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCEECCCCEECCCccccc----ccceEcCCeEEEEecccCC
Confidence 999999999987533322 2678888898889888754
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=129.63 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=45.7
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.||+++.|. .+.|++||+||++|.|..++.+...+++|++++|+.+. ++||++++|+++++|
T Consensus 227 ~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 227 VIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred eeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 455555555 46677788888888888888888888888888888762 668888888877764
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=116.60 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=87.9
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCc
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSV 456 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~ 456 (520)
..+.+.|.+.+. .++.||++|.|++ |.|. .++||++|.|+++|+|.++..+... ...++.+|+++
T Consensus 4 ~~~~I~~~a~i~----g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~~- 73 (164)
T cd04646 4 PGAVVCQESEIR----GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSNN- 73 (164)
T ss_pred CCcEECCCCEEc----CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCCC-
Confidence 344444554443 5678899999987 7774 3699999999999999988765431 22566777777
Q ss_pred ceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCC
Q 010006 457 PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 517 (520)
Q Consensus 457 ~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~g 517 (520)
.|+.++.+.+++||++|.||.++.|..+..+++.+.++.++.|..+ +.|+++++++.+
T Consensus 74 --~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~ 131 (164)
T cd04646 74 --VFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGA 131 (164)
T ss_pred --EECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCC
Confidence 6888889999999999999999999876666665555555555555 555555555544
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=124.14 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=73.9
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~ 437 (520)
.++++.+.|...+.+.|.+.+. .++.|+++|+|++ |.|. ++.||++|.|++++.|.. .+.++
T Consensus 5 a~I~~~a~Ig~~~~I~~~~~I~----~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG 80 (254)
T TIGR01852 5 AIIEPGAEIGENVEIGPFCIVG----PGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIG 80 (254)
T ss_pred CEeCCCCEECCCCEECCCCEEC----CCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEEC
Confidence 3455566666666666665553 3455555555555 5444 466666666666666642 12222
Q ss_pred -CccccccccccccccCCC----cceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 438 -ADYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 438 -~~~~~~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
++... .++.|..+. .++.||+++.|. ++.|+++|.||++|.|.+...+.+...++++++|+.+ +.|..+
T Consensus 81 ~~~~I~----~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~-~~i~~~ 155 (254)
T TIGR01852 81 DNNTIR----EFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-VAVHQF 155 (254)
T ss_pred CCCEEC----CCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEecc-CEECCC
Confidence 11110 011111110 023555555554 5556666666666666666666666666666666666 666666
Q ss_pred CEeCCCccC
Q 010006 512 ALIPSGTII 520 (520)
Q Consensus 512 ~~i~~gtvi 520 (520)
+.|+++++|
T Consensus 156 v~Ig~~~~I 164 (254)
T TIGR01852 156 VRIGRYAMI 164 (254)
T ss_pred cEECCCCEE
Confidence 666666553
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=111.88 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=88.4
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|++++..+...++.|+...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999998 245999999998 999999999998 789999999999999999988721
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHH
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHR 229 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~ 229 (520)
++++...- .|-..-+..++..+. .++|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG--------~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG--------EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC--------CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 55654321 355667777776665 4999999999 55544 777777765
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-12 Score=117.21 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=85.0
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||+. ||+|+|++|+ |||+|+++.+... +++|+|+++++.+. ... + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~-~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----YAL-L--------G-- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh-c--------C--
Confidence 4689999999999983 9999999986 9999999999987 89999999876544 111 1 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++. ++.|..|+.++++.++..++ .+.+++++||+ +.+.+ +..+++.+ ..+.++
T Consensus 59 -~~~v~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 -VPVIP------DEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred -CcEee------CCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 22322 12234799999999998764 47899999999 55554 87888766 334443
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-12 Score=113.20 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=76.9
Q ss_pred cCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccC
Q 010006 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 453 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~ 453 (520)
+....|.+++.+.|.+.+. .|+.||+++.|+. +.|+.=. ...+||++|.|++.+++..+ .+..+.||+
T Consensus 9 ~~~P~i~~~a~Va~~A~vi----GdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~-----~~~p~~IG~ 77 (176)
T COG0663 9 GLSPKIDPTAFVAPSATVI----GDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHAD-----PGYPVTIGD 77 (176)
T ss_pred CCCCCCCCceEECCCCEEE----EeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecC-----CCCCeEECC
Confidence 3344566666667777664 6888899988888 7776322 55667777777777777653 236788999
Q ss_pred CCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCC
Q 010006 454 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE 491 (520)
Q Consensus 454 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~ 491 (520)
++ +||+++.|+.|.|+++|.||.|++|.|++.+++
T Consensus 78 ~v---tIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~ 112 (176)
T COG0663 78 DV---TIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGD 112 (176)
T ss_pred Cc---EEcCccEEEEeEECCCcEEecCceEeCCcEECC
Confidence 98 899999999999999999999999998544433
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.1e-12 Score=128.58 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=39.7
Q ss_pred cccccCCCcceeeCCCCEEc-----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 448 RFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+.||+++ .||+++.|. +++|++++.|+.+|.|...+.+++++.++.++.|..+ ++||+++.|+.++.|
T Consensus 203 ~v~Ig~~v---~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i 276 (343)
T PRK00892 203 RVIIGDDV---EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGI 276 (343)
T ss_pred cEEECCCc---EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEE
Confidence 46666666 677777664 3455555555555555444444444444444444444 677777777776653
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-10 Score=110.16 Aligned_cols=222 Identities=19% Similarity=0.190 Sum_probs=143.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChh-HHHHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSA-SLNRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~ 164 (520)
++++.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+. |++|+|+++.... .+.++...
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-------- 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL-------- 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--------
Confidence 4578999999999999995 799999999987 99999999998854 7999999986433 33333321
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~ 242 (520)
.....++++.- + ..-.++++.++..+..+..+.||+..+== |... .+.++++... +..+.+.+.|+
T Consensus 70 -~~~~~v~~v~G-----G----~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 70 -SADKRVEVVKG-----G----ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred -ccCCeEEEecC-----C----ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 01122444321 1 23568999999888754456677776654 5554 4888884433 34455666665
Q ss_pred CcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
.+ -+...++++.|.+. +........+ --..|+.+.|.+.+...+....+
T Consensus 138 ~D------Tik~~~~~~~i~~t---~~R~~l~~~Q----------------------TPQ~F~~~~L~~a~~~a~~~~~~ 186 (230)
T COG1211 138 TD------TLKRVDADGNIVET---VDRSGLWAAQ----------------------TPQAFRLELLKQALARAFAEGRE 186 (230)
T ss_pred cC------cEEEecCCCCeeec---cChhhhhhhh----------------------CCccccHHHHHHHHHHHHhcCCC
Confidence 43 13344445666644 3333222111 12367888887776654433333
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+. |--..+...|.++..+.-+-+-+-|.||+|+..|+..+.
T Consensus 187 ~t-Ddas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 187 IT-DDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cC-CHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 32 222233333888888888888999999999998887653
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=124.03 Aligned_cols=143 Identities=25% Similarity=0.314 Sum_probs=74.9
Q ss_pred ccccCCCccccCCCcCCCceee-------cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKML-------DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY 441 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~-------~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~ 441 (520)
..++|++.+...+.+.|++.+. ++.| .+++||++|.||+ |.|. +++|+.++.||++|.|....+++.|-|
T Consensus 106 A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgF 185 (338)
T COG1044 106 AVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGF 185 (338)
T ss_pred ccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcc
Confidence 3456666666655555555554 1222 3344555555554 4444 455555555555555555555554422
Q ss_pred ----------cccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC-----eE
Q 010006 442 ----------ETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IV 506 (520)
Q Consensus 442 ----------~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v 506 (520)
......+++||+++ .||.|++|.+.-++ ++.||+++.|-|.+.++.++++|++|.|..+ .+
T Consensus 186 g~a~~~~g~~Ki~q~g~V~Igd~V---eIGanT~Idrga~~-dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~ 261 (338)
T COG1044 186 GYAGTAIGWVKIPQIGRVIIGDDV---EIGANTTIDRGALD-DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSV 261 (338)
T ss_pred ccccccCCceEcceeceEEECCce---EEcccceecccccc-CceecCCcEEcceeEEccccEECCCcEEeccceeeccc
Confidence 12222455555555 56666666432222 2555555555555555555555555555544 27
Q ss_pred EEcCCCEeCCCc
Q 010006 507 TIIKDALIPSGT 518 (520)
Q Consensus 507 ~Ig~~~~i~~gt 518 (520)
+||+++.|+..+
T Consensus 262 ~IG~~v~igg~v 273 (338)
T COG1044 262 KIGKYVIIGGQV 273 (338)
T ss_pred eECCeEEECcce
Confidence 788888887654
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=117.12 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=69.3
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc--c
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--R 447 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~--~ 447 (520)
..++.+...+...+.+.|.+.+. .+++||++|+|++ |.|.++.||++|.|+++|.|+++++.++......+. .
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~ 84 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP 84 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcC
Confidence 44556666677777777777664 5789999999998 999999999999999999999887766533222111 2
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
++.+++++ .|++++.+++++|++++.|+..
T Consensus 85 ~~~Ig~~~---~Ig~~~~i~~s~ig~~~~i~~~ 114 (193)
T cd03353 85 GTVLGEGV---HIGNFVEIKKSTIGEGSKANHL 114 (193)
T ss_pred ccEECCCC---EECCcEEEecceEcCCCEeccc
Confidence 34444444 4555555556666655544443
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=122.90 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=58.5
Q ss_pred cceEECCCcEEee-eEEe-------------eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCc---ceee
Q 010006 398 TDSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSV---PIGI 460 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-------------~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~I 460 (520)
.++.||++|.|++ +.|. ++.||++|.|+++|+|......+..... -..++.+++++. .+.|
T Consensus 46 ~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~--IG~~~~I~~~~~I~~~~~I 123 (254)
T cd03351 46 GPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTR--IGNNNLLMAYVHVAHDCVI 123 (254)
T ss_pred CCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceE--ECCCCEECCCCEECCCCEE
Confidence 3566777777776 6664 4677777777777777654322210000 001222222220 1234
Q ss_pred CCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 461 GKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 461 g~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|+++.|. ++.+..+++||++|.|.+.+.+...++++++++|+.+
T Consensus 124 G~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~ 168 (254)
T cd03351 124 GNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG 168 (254)
T ss_pred CCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC
Confidence 4444444 4455556677777777777777777777777777777
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=116.07 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=31.5
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEec------CCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVN------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~------~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
||+++.+. ++.|+.+++||+++.|.+ ...+++.++++.++.|..+ ++|+++++|++++++
T Consensus 117 Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v 183 (205)
T cd03352 117 IGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGV 183 (205)
T ss_pred ECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 34444433 334444444444444444 4444444444444555555 678888888877764
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=109.75 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=131.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (520)
+.|||||||.|+||+ ...||.+++++|+ |+|.|+++.+.+. .+++|+|++.... +.+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 469999999999998 4689999999997 9999999999884 6899999997665 333333333 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.+.++.-. ..-.+++++++..+.+.. +.+++..|=- +...+ +.++++..++. ..+.+...+..+
T Consensus 67 --~v~iv~GG---------~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D- 132 (221)
T PF01128_consen 67 --KVKIVEGG---------ATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD- 132 (221)
T ss_dssp --TEEEEE-----------SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS-
T ss_pred --CEEEecCC---------hhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc-
Confidence 13343211 224689999998887532 5677766654 55544 88888887652 344556666432
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
. +...++++.|.+.. ..... +.--.-..|+.+.|.+..+........+ +
T Consensus 133 ----T-ik~v~~~~~v~~tl---dR~~l----------------------~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-t 181 (221)
T PF01128_consen 133 ----T-IKRVDDDGFVTETL---DRSKL----------------------WAVQTPQAFRFELLLEAYEKADEEGFEF-T 181 (221)
T ss_dssp ----E-EEEESTTSBEEEEE---TGGGE----------------------EEEEEEEEEEHHHHHHHHHTHHHHTHHH-S
T ss_pred ----c-EEEEecCCcccccC---CHHHe----------------------eeecCCCeecHHHHHHHHHHHHhcCCCc-c
Confidence 2 33456567766543 22221 2233455788888887765431111122 3
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
|--..+...|.+++.++-+..-+-|.+|+|+..|...+
T Consensus 182 Ddasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 182 DDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp SHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 33334444488999988887889999999998887644
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=120.98 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=52.1
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc----ccccccccccccCCCcceeeCCCCEEcc----
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY----YETDADRRFLAAKGSVPIGIGKNSHIKR---- 468 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---- 468 (520)
.++|++++.|++ |.|. +++|+.++.||++|.|.+...++.+- |. .....+.||+++ .|+++++|.+
T Consensus 26 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~-g~~~~v~IG~~~---~I~e~~~I~~~~~~ 101 (262)
T PRK05289 26 FCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYK-GEPTRLVIGDNN---TIREFVTINRGTVQ 101 (262)
T ss_pred CeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeeccc-CCCCeEEECCCC---EECCCeEEeccccc
Confidence 345555555554 5444 45555555555555555555544310 00 111245555555 4555555543
Q ss_pred ----eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 469 ----AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 469 ----~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++||+++.|+.++.|...+.+++.+.++.++.+..+ ++||+++.|+++++
T Consensus 102 ~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~-v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 102 GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLTA 155 (262)
T ss_pred CCCeeEECCceEECCCCEECCeEEECCCeEECCccccccc-cccCCcEEEeecce
Confidence 234444444444444333333333333333333333 45555555555443
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=111.10 Aligned_cols=106 Identities=16% Similarity=0.325 Sum_probs=75.3
Q ss_pred ccccceEEEEEeCCCCCCCCccccCCCccceecCC-ccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCC
Q 010006 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (520)
Q Consensus 85 ~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G-~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (520)
.+.+++.+||||||.|+||+ .+|+|+|++| + |||+|+++.+... +++|+|++++ +.. . .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~--- 63 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F--- 63 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c---
Confidence 44567999999999999997 6999999998 7 9999999999876 8999999874 111 0 0
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHH
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERF 224 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~l 224 (520)
. +.++.... .. ..|...++..++...+ .+.+++++||+ +++.+ +.++
T Consensus 64 ---~---~~~v~d~~--~~---~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 ---N---APFLLEKE--SD---LFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred ---C---CcEEecCC--CC---CCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 0 12222211 11 2566667776654333 47899999999 65665 5555
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=114.25 Aligned_cols=118 Identities=12% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccc
Q 010006 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 451 (520)
Q Consensus 377 ~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~ 451 (520)
...|..++.+.|.+.+. .++.||++|.|+. |.|.. .+||++|.||++|+|.... ..++.|
T Consensus 8 ~p~i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----------~~~siI 72 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----------GQDTVV 72 (192)
T ss_pred CCcCCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----------CCCCeE
Confidence 33455555666666554 5678888888887 77763 6888889999888884321 134556
Q ss_pred cCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 452 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++++ .||+++.|++|+|++++.||.++++.++.. ++++++|+++ +.|.++..|+++++
T Consensus 73 g~~~---~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~------IG~~s~Vgag-s~V~~~~~ip~~~l 130 (192)
T TIGR02287 73 EENG---HVGHGAILHGCIVGRNALVGMNAVVMDGAV------IGENSIVAAS-AFVKAGAEMPAQYL 130 (192)
T ss_pred CCCC---EECCCCEEcCCEECCCCEECCCcccCCCeE------ECCCCEEcCC-CEECCCCEECCCeE
Confidence 6666 799999999999999999999999976444 4455555555 55555555555543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=120.32 Aligned_cols=126 Identities=15% Similarity=0.283 Sum_probs=84.4
Q ss_pred cCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
+....+...+.+.|.+.+. .++.||++|.|+. |.|.. ..||++|.|+++|.|..+..-- ......+
T Consensus 50 ~~~p~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~-----~g~~~~s 120 (269)
T PLN02296 50 DKAPVVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNL-----SGKVLPT 120 (269)
T ss_pred CCCCccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcc-----cCCCCCc
Confidence 3444556666677777664 4677888888876 76663 4788888888888886321100 0011356
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+||+++ .||+++.|.+|+|+++|.||.+++|.++. +++++++|+.| ++|.++..|+++++
T Consensus 121 iIG~~v---~IG~~avI~g~~Igd~v~IG~ga~I~~gv------~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 121 IIGDNV---TIGHSAVLHGCTVEDEAFVGMGATLLDGV------VVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred EeCCCC---EECCCceecCCEECCCcEECCCcEECCCe------EECCCCEECCC-CEEecCCEeCCCeE
Confidence 777777 79999999999999999999999997654 45555666666 55555555555554
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=112.94 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+. +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~--------~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF--------G-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC--------C--
Confidence 468999999999997 359999999987 999999999986 589999988654322 111111 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~t 236 (520)
+.++... ..+..|+.++|+.++..++ .+.++++.||+ +.+.+ +..+++.+.+.++.++
T Consensus 62 -~~~i~~~-----~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 121 (186)
T TIGR02665 62 -LPVVPDA-----LADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADIA 121 (186)
T ss_pred -CcEEecC-----CCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence 1222211 1123799999999998774 47899999999 66655 7788877654444443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=119.96 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc---ccccccccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY---YETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
++|++++.|++ |.|. +++|..++.||++|.|.+...++... -.......+.||+++ .|+++++|. .+.++.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~---~I~e~vtI~~gt~~g~ 100 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN---VIREGVTIHRGTKGGG 100 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce---EECCccEEecCcccCC
Confidence 44555555544 4444 45555555555555555444444210 000111234455554 455555554 223333
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccC-----eEEEcCCCEeCCCcc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTI 519 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~-----~v~Ig~~~~i~~gtv 519 (520)
+++||++|.|.+++.+.+.+.+|+++.|+.+ -|+||++++|+++++
T Consensus 101 ~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 101 VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 3444444444443334334444444333322 144555555554443
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=113.81 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=78.3
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCcccc---------
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYE--------- 442 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~--------- 442 (520)
+.+.+.+...+.+.+++.+. ++.| .++.||++|+|+. ++.|+.++.||++|.|.+...++.+.+.
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~----~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~ 85 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHP----NVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV 85 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC----CCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEE
Confidence 34444444444444444443 1222 3445555555544 4555555555566655555444432221
Q ss_pred -ccccccccccCCCcceeeCCCCEEc-----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCC
Q 010006 443 -TDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 516 (520)
Q Consensus 443 -~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~ 516 (520)
......+++++++ .|++++.+. ++.|++++.|+.++.|.+...+++...++.++.|..+ ++||+++.|++
T Consensus 86 ~~~~~~~v~Ig~~~---~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~ 161 (205)
T cd03352 86 KIPQLGGVIIGDDV---EIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGG 161 (205)
T ss_pred EcCCcceEEECCCE---EECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcC
Confidence 1112356777766 678777774 4677778877777777776666666666656555555 66666666666
Q ss_pred CccC
Q 010006 517 GTII 520 (520)
Q Consensus 517 gtvi 520 (520)
+++|
T Consensus 162 ~~~v 165 (205)
T cd03352 162 QVGI 165 (205)
T ss_pred CCEE
Confidence 6543
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=129.89 Aligned_cols=107 Identities=22% Similarity=0.271 Sum_probs=67.0
Q ss_pred cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc---
Q 010006 394 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK--- 467 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~--- 467 (520)
++.+.+++|+++|.|+. +.|. +++||++|.||++|.+.++.+..++.+..... ..+.||+++ .||.++.+.
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~---~ig~~~~~~~~~ 384 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNV---NIGAGTITCNYD 384 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCc---EECCCeEEeCcc
Confidence 34455677888888887 7777 68889999999988888777765433221111 234555555 455555553
Q ss_pred -----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 468 -----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 468 -----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
.++|++++.||.++.|. ...++|++++|++| .+|.+
T Consensus 385 ~~~~~~~~Igd~~~ig~~~~i~------~~~~ig~~~~i~~g-~~v~~ 425 (451)
T TIGR01173 385 GANKHKTIIGDGVFIGSNTQLV------APVKVGDGATIAAG-STVTK 425 (451)
T ss_pred cccCCCCEECCCcEECCCCEEE------CCcEECCCCEEccC-CEECc
Confidence 24555555555555554 45667777777777 44433
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=108.19 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=71.2
Q ss_pred cceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEEC
Q 010006 398 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 472 (520)
.++.||++|+|++ |.|.. +.||++|.|+++|+|.... ..++.+++++ .|++++.+.+++|+
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~-----------~~~~~Ig~~~---~Ig~~~~i~~~~Ig 82 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFP-----------GQDTVLEENG---HIGHGAILHGCTIG 82 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecC-----------CCCeEEcCCC---EECCCcEEECCEEC
Confidence 4678888888887 77763 7899999999999993210 1234445555 79999999999999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
+++.||.+++|.++..+++.+.++.++++..+ ..|++++++
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~-~~i~~~~~v 123 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAG-TVIPPRSLI 123 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCC-CEeCCCCEE
Confidence 99999999999875555554444444444444 344444443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=107.00 Aligned_cols=113 Identities=24% Similarity=0.324 Sum_probs=80.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++.|.+||||||+|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +...
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~---------- 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF---------- 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc----------
Confidence 46799999999999999 58999999997 999999999998754 555555444332 1111
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETD 232 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 232 (520)
+ ++++.+. ..++ |...+++.++..+. .+.+++++||+ +...+ +..+.+...+.+
T Consensus 61 --g-~~vv~D~-----~~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 --G-LPVVPDE-----LPGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred --C-CceeecC-----CCCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 3344322 1222 89999999997775 47999999999 66666 556666554433
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=122.22 Aligned_cols=115 Identities=19% Similarity=0.366 Sum_probs=81.4
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccc-cccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYET-DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
++.||.+|+|.. +.++ ++.||++|+||++|.|.|+.|-++..... -+-..+.+|+|+ .||++++++ ++.++++
T Consensus 268 dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~---~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 268 DVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGA---TVGPFARLRPGAVLGAD 344 (460)
T ss_pred cEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCc---ccCCccccCCcCcccCC
Confidence 455566666665 5555 68888888888888888888776654443 233567778888 799999999 9999999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++||..|.+.+ +.+++....++-+|||+. .||.++.||+||+
T Consensus 345 ~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGtI 386 (460)
T COG1207 345 VHIGNFVEVKK-ATIGKGSKAGHLTYLGDA--EIGENVNIGAGTI 386 (460)
T ss_pred CeEeeeEEEec-ccccCCccccceeeeccc--eecCCceeccceE
Confidence 99999999975 667766665555555554 5555555555543
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=96.01 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=53.7
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +.|.+++||++|.|+++|.|++++++++ +.|++++.|.+++|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 567777776 6677888999999999999988888775 47888888989999999999988
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 88864
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-11 Score=120.46 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=53.9
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccc-----------cccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYET-----------DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
++.|+.+|.||++|.|...+.++++-|.. .....+.||+++ .||.+++|.+..+ .+++||+++.|
T Consensus 151 ~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v---~IGa~~~I~r~~~-~~t~Ig~~~~I 226 (324)
T TIGR01853 151 NVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDV---EIGANTTIDRGAF-DDTIIGEGTKI 226 (324)
T ss_pred CcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCc---EECCCCEEecCCc-CcceecCCcEE
Confidence 34444445555555555555555432211 111346666666 5777776643222 23455555555
Q ss_pred ecCCCcCCcccccCCeEEccC-----eEEEcCCCEeCCCccC
Q 010006 484 VNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTII 520 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~-----~v~Ig~~~~i~~gtvi 520 (520)
.|.+.+++++++|+++.|..+ .++||+++.|++++.|
T Consensus 227 ~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I 268 (324)
T TIGR01853 227 DNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGV 268 (324)
T ss_pred ccCcEECCCCEECCCcEECCcceEcCccEECCCeEEcccccc
Confidence 555555555555555555543 2777877777766654
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-11 Score=111.79 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=79.8
Q ss_pred cccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCC
Q 010006 380 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 454 (520)
Q Consensus 380 i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 454 (520)
+...+.+.|.+.+. .+++||++|.|+. |.|.. .+||.+|.||++|.|..... .++.++++
T Consensus 13 i~~~a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----------~~siIg~~ 77 (196)
T PRK13627 13 VHPTAFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----------TDTIVGEN 77 (196)
T ss_pred cCCCeEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----------CCCEECCC
Confidence 33444555555543 5677888888887 77764 47888888888888865431 35677777
Q ss_pred CcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 455 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 455 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
+ .||+++.+.+|+|+++|.||.++++.++.. +++++.|++| .+|-++..+++++
T Consensus 78 ~---~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~------IG~~s~Vgag-s~V~~~~~ip~~~ 131 (196)
T PRK13627 78 G---HIGHGAILHGCVIGRDALVGMNSVIMDGAV------IGEESIVAAM-SFVKAGFQGEKRQ 131 (196)
T ss_pred C---EECCCcEEeeEEECCCCEECcCCccCCCcE------ECCCCEEcCC-CEEeCCcCcCCCc
Confidence 7 799999999999999999999999976444 4455555555 4455555555544
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=106.79 Aligned_cols=115 Identities=25% Similarity=0.279 Sum_probs=79.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccCh--hHHHHHHHHhhhccCCCCcCC
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 168 (520)
|||||+|.|+||. +|+|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. +.
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~~--------- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-LG--------- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-cC---------
Confidence 7999999999995 4999999987 99999999999987 899999998765 556555543 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEE
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADIT 236 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~t 236 (520)
+.++. ++.| + .+......++....+.++++.||+ +++. .+.++++.+...+.+++
T Consensus 65 --v~~v~------~~~~--~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFR------GSEE--D---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEE------CCch--h---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22321 1111 1 222222222222357899999999 6664 49999998876666554
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=113.72 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=85.7
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADR 447 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~ 447 (520)
+.+....+...+.+.|++.+. .++.||++|.|+. +.|.. ..||++|.|+++|.|....... +....
T Consensus 55 ~~~~~p~i~~~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~-----~~i~~ 125 (246)
T PLN02472 55 LGQWVPKVAVDAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSP-----TGLPA 125 (246)
T ss_pred cCCcCCccCCCCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccc-----cCCCC
Confidence 333344556666777777665 4677888888876 66652 6888999999988885332100 00013
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.+.||+++ .||+++.|.+|+|+++|.||.+++|.++.. +++++.|+++ ++|.++..|++|++
T Consensus 126 ~tvIG~~v---~IG~~s~L~~~~Igd~v~IG~~svI~~gav------Ig~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 126 ETLIDRYV---TIGAYSLLRSCTIEPECIIGQHSILMEGSL------VETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred CcEECCCC---EECCCcEECCeEEcCCCEECCCCEECCCCE------ECCCCEECCC-CEECCCCEeCCCCE
Confidence 56777777 899999999999999999999999986443 4445555555 55555555555543
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=113.09 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=14.5
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.||++|.|++ |.|.+++||++|.|+.+|.|.+
T Consensus 20 ~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~ 53 (204)
T TIGR03308 20 SKLGRYTEIGERTRLREVALGDYSYVMRDCDIIY 53 (204)
T ss_pred cEeCCCcEECCCcEEeCCEECCCCEECCCcEEee
Confidence 34444444444 4444444444444444444433
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=114.18 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
++|+++|.||.+++|..+..+++++.++.+++|..+ +.|++
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g-t~I~~ 217 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS-TKIYD 217 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC-eEECc
Confidence 455555555555555444444444444444444444 44443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=102.87 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=75.1
Q ss_pred cceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEEC
Q 010006 398 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 472 (520)
.++.||++|.|++ +.|.. .+||++|.|+++|.|.... ..++.||+++ .|++++.+.+++|+
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~-----------~~~~~Ig~~~---~I~~~~~i~~~~Ig 82 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH-----------GYPTEIGDYV---TIGHNAVVHGAKVG 82 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC-----------CCCeEECCCC---EECCCcEEECcEEC
Confidence 5677888888887 77774 4899999999999987531 0234555555 79999999999999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCE
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 513 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~ 513 (520)
+++.||.++.+.+...+++...++.++.+..+ ..|+++++
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g-~~i~~~~v 122 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG-KEIPDYSL 122 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCCE
Confidence 99999999999876666666666666655555 55555555
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=104.41 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=59.2
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc-cEEECCccccccccccccccCCCcceeeCCCCEEcceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-TLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 474 (520)
.++.|++++.|++ +.|. +++||++|+|+++|.|++ ++++++ +.|++++.|.+++|+++
T Consensus 16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~-------------------~~I~~~~~i~~siig~~ 76 (163)
T cd05636 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDG-------------------CVVGNSVEVKNSIIMDG 76 (163)
T ss_pred CCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCC-------------------CEECCCcEEeeeEecCC
Confidence 4567788888876 6666 689999999999999985 444443 47888899988898888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEE
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFI 501 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I 501 (520)
+.|+.++.+.+ .-+++..++++++.+
T Consensus 77 ~~I~~~~~i~~-siIg~~~~I~~~~~i 102 (163)
T cd05636 77 TKVPHLNYVGD-SVLGENVNLGAGTIT 102 (163)
T ss_pred CEeccCCEEec-CEECCCCEECCCcEE
Confidence 88877665532 334444444444433
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=112.54 Aligned_cols=110 Identities=11% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++++.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|+++...... +.. +
T Consensus 172 ~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~~---~~~-~-------- 232 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAEQ---YRS-F-------- 232 (369)
T ss_pred cCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhhH---Hhh-c--------
Confidence 456789999999999998 59999999997 9999999999864 788888776542211 111 1
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHH
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (520)
+ +.++.... ...|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 233 ~---v~~i~d~~------~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 G---IPLITDSY------LDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred C---CcEEeCCC------CCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 22332211 12688888888876543 46899999999 66665 6666664
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=118.29 Aligned_cols=121 Identities=24% Similarity=0.309 Sum_probs=86.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++.+.+.+.+++.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 457899999999999995 379999999987 999999999986 4899999776554443332211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+.++.... ++ ..|..++++.++..++ .+.+++++||+ ++..+ +..+++.+...++++
T Consensus 67 ----~~~i~d~~----~g-~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ----LPVYPDIL----PG-FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ----CcEEecCC----CC-CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 11221111 11 1588899999987764 36799999998 66655 777887665555443
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=102.60 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=81.9
Q ss_pred ccccCCCcCCCceeecccccceEECCCcEEee-eEEe-----eeEECCCCEECCCCEEcccEEECCcccccccccccccc
Q 010006 379 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 452 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~ 452 (520)
.|.+++.+.|.+.+. .++.||++|+|++ +.|. ++.||++|.|++++.|.... ...+.+|
T Consensus 4 ~ig~~~~I~~~a~i~----~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~-----------~~~v~Ig 68 (167)
T cd00710 4 VIDPSAYVHPTAVVI----GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE-----------GYSVWIG 68 (167)
T ss_pred EeCCCeEECCCCEEE----eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC-----------CCCEEEC
Confidence 344455555555553 3566777777776 6554 25777777777777774210 1234555
Q ss_pred CCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 453 KGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 453 ~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++ .|+.++.|. .++|+++|.||.++.|.+ +.+++.+.++.++.|. + +.|++++++++|+++
T Consensus 69 ~~~---~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 69 KNV---SIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred CCc---eECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 666 788888887 499999999999999863 5667777777777663 4 678888888888763
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=101.03 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=76.2
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcce
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPI 458 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+.+.|.+.+. .++.||++|.|++ +.|.. ++||++|.|+++|+|.++.. .+++||+++
T Consensus 6 ~~i~~~a~i~----g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-----------~~~~Ig~~~--- 67 (153)
T cd04645 6 AFIAPNATVI----GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG-----------YPTIIGDNV--- 67 (153)
T ss_pred eEECCCCEEE----EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----------CCeEEcCCc---
Confidence 3344444443 4577888888887 76663 58999999999999877511 123333444
Q ss_pred eeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 459 GIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 459 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
.|+.++.+.+++|++++.||.++.+.....++++++++.++.|..+ +.|+.++++
T Consensus 68 ~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~~ 122 (153)
T cd04645 68 TVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG-KVIPPGSLV 122 (153)
T ss_pred EECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC-CEeCCCCEE
Confidence 7999999999999999999999999766555555555555555555 455555544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.1e-10 Score=90.00 Aligned_cols=65 Identities=45% Similarity=0.673 Sum_probs=55.6
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
|+++|.|++ +.|.+++||++|+|++++.|+++++++. +.|++++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 677777776 7777889999999999999999988876 57999999999999999999999
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88865
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=122.31 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc---
Q 010006 394 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK--- 467 (520)
Q Consensus 394 ~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~--- 467 (520)
++.+.+++|+++|.|+. +.|. ++.||.++.||+++.|.++.++.+..+-.... .++.||+++ .||.++.+.
T Consensus 312 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~---~ig~~~~~~~~~ 388 (456)
T PRK09451 312 YSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNV---NIGAGTITCNYD 388 (456)
T ss_pred CEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCC---EEcCCeEEeccc
Confidence 34556778888888887 8887 78999999999999998888877654422111 345555555 566555442
Q ss_pred -----ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 468 -----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 468 -----~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
.++||++|.||.++.+ ..+.+++++++|++| ++|.+
T Consensus 389 ~~~~~~~~Igd~~~ig~~~~i------~~~~~ig~~~~i~~g-s~v~~ 429 (456)
T PRK09451 389 GANKFKTIIGDDVFVGSDTQL------VAPVTVGKGATIGAG-TTVTR 429 (456)
T ss_pred CcccCCCEECCCcEECCCCEE------eCCcEECCCCEECCC-CEEcc
Confidence 2445555555555544 455566666777766 44433
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=109.95 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=10.0
Q ss_pred eEECCCCEECCCCEEcccEEE
Q 010006 416 SVVGLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 416 s~Ig~~~~Ig~~~~I~~~~i~ 436 (520)
+.||.+|.||++|+|..++.+
T Consensus 142 a~IG~~v~IG~nv~I~~g~~I 162 (269)
T TIGR00965 142 ATVGSCAQIGKNVHLSGGVGI 162 (269)
T ss_pred cEECCCCEECCCCEEcCCccc
Confidence 444445555555544444433
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-10 Score=101.71 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=79.2
Q ss_pred ceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 399 DSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
+..||++|+|++ |.|.. +.||++|.|+++|.|.++..+.+. ......+.||+++ .|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~~~~v~Ig~~~---~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSK---GVAFFPLHIGDYV---FIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCC---CccccCeEECCcc---EECCCCEEEeeEEcC
Confidence 455666666665 55553 699999999999999987654431 1112467788888 799999999999999
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
++.||++++|..+..+++.+++++++.|.++ +.|+++++++
T Consensus 95 ~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv~ 135 (161)
T cd03359 95 YVHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVVS 135 (161)
T ss_pred CcEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEEe
Confidence 9999999999876666666555555555555 5555555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=120.73 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=50.8
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEc------------------ccEEECCcccccccc-ccccccCC
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE------------------DTLLMGADYYETDAD-RRFLAAKG 454 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~------------------~~~i~~~~~~~~~~~-~~~~~~~~ 454 (520)
+.|.+++|+++|.|++ |.|.+++||++|.||++|+|. +++++++........ .++.+|++
T Consensus 300 ~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~ 379 (456)
T PRK14356 300 CWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG 379 (456)
T ss_pred eEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCC
Confidence 3445556666666665 555555555555555554443 334333322211110 23445554
Q ss_pred CcceeeCCCCEE--------cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 455 SVPIGIGKNSHI--------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 455 ~~~~~Ig~~~~i--------~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+ .||+++.+ .+++|++++.||.++.+.. ..++|++++|++|
T Consensus 380 ~---~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~------~~~ig~~~~i~~~ 428 (456)
T PRK14356 380 A---NIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVA------PVTIGDGALVGAG 428 (456)
T ss_pred C---EECCCceeeccccccCCCCEECCCcEEcCCCEEeC------CcEECCCCEEcCC
Confidence 4 45555543 1355666666666665554 4456666666666
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=120.01 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccc-cccccccCCCcceeeCCCC
Q 010006 388 PPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFLAAKGSVPIGIGKNS 464 (520)
Q Consensus 388 ~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~Ig~~~ 464 (520)
.++.+..+.+.+++|+++|.|++ +.|. +++||++|+||++|.+.++++..++...... -..++||+++ .||.++
T Consensus 295 ~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~---~ig~~~ 371 (448)
T PRK14357 295 NNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNV---NIGAGT 371 (448)
T ss_pred CCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCc---EECCCc
Confidence 33333334456788999999998 8886 6999999999999999988876654221111 1245666666 566666
Q ss_pred EEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 465 HIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 465 ~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.+. .++|++++.||.++.|.++ .++++++.|++|
T Consensus 372 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~g------v~Ig~~~~i~ag 413 (448)
T PRK14357 372 ITCNYDGKKKNPTFIEDGAFIGSNSSLVAP------VRIGKGALIGAG 413 (448)
T ss_pred ccccccccccCCcEECCCCEECCCCEEeCC------cEECCCCEEcCC
Confidence 552 3666666777666666544 455555555555
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.9e-10 Score=98.52 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=15.4
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
+.||++|+|+. ++.|+.++.||++|.|...+.++
T Consensus 32 ~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 32 AYVDEGTMVDS----WATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CEECCCeEEcC----CCEECCCCEECCCCEECCCCEEC
Confidence 44555555554 34444444444444444444333
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=122.03 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=81.8
Q ss_pred CCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCC
Q 010006 377 SAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG 454 (520)
Q Consensus 377 ~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~ 454 (520)
.+.+..+..++.+++|. +++|.|++||.||.||. +.|++|+|+.+|+||+||.|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 45566666777777776 78889999999999998 9999999999999999999999999987
Q ss_pred CcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCc
Q 010006 455 SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 455 ~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
+.|++++++. +|+++-++.+|++-++..+..+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 6899999996 8999999999999988766555
|
|
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=101.05 Aligned_cols=100 Identities=15% Similarity=0.295 Sum_probs=68.9
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-----cceEECCC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 474 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 474 (520)
+.|.++++|.+ ++.||++|.|+++|.|.... ..+.||+++ .|+++|+| .+++|+++
T Consensus 7 ~~i~~~a~i~g----~v~IG~~~~I~~~~~i~~~~------------~~i~IG~~~---~Ig~~~~I~~~~~~~~~Ig~~ 67 (155)
T cd04745 7 SFVHPTAVLIG----DVIIGKNCYIGPHASLRGDF------------GRIVIRDGA---NVQDNCVIHGFPGQDTVLEEN 67 (155)
T ss_pred eEECCCCEEEc----cEEECCCCEECCCcEEeCCC------------CcEEECCCC---EECCCCEEeecCCCCeEEcCC
Confidence 44555555443 67788888888888776520 123344455 68888888 56888888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.++++.+ ..+++.+.++.+++|.++ ++|+++++|+++++|
T Consensus 68 ~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 68 GHIGHGAILHG-CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred CEECCCcEEEC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 88888887753 667777777777777777 777777777777654
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-10 Score=88.65 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=54.1
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
||++|.|++ +.|.+++||++|.|+++|+|.+++++++ +.|+++++|.+++|+++++||++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 567777776 6677889999999999999998888775 47899999999999999998888
Q ss_pred cEEec
Q 010006 481 VKIVN 485 (520)
Q Consensus 481 ~~i~~ 485 (520)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 87754
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=120.45 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=85.4
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
+++.||++|.|++ |.|. ++.||++|+|+++|.|+++++++++.....+. .++.+|+++ .||+++.+. +++|++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~---~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGS---DVGPFARLRPGTVLGE 345 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCce---EECCccEEcCCcEECC
Confidence 4678899999987 8888 68899999999999999999998877665443 457788887 788888886 788888
Q ss_pred CCEECCCcEEec-----CCCcC-----CcccccCCeEEccC------------eEEEcCCCEeCCCccC
Q 010006 474 NARIGDNVKIVN-----SDSVQ-----EAARETDGYFIKSG------------IVTIIKDALIPSGTII 520 (520)
Q Consensus 474 ~~~Ig~~~~i~~-----~~~v~-----~~~~~~~~~~I~~~------------~v~Ig~~~~i~~gtvi 520 (520)
+++||+++.|.+ +..++ +..++|++|.|+.+ .++||+++.|+++++|
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 888888666432 22221 11334444444433 1467777777777653
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=105.04 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=73.6
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECCC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 474 (520)
|+++++|.+ +.|. ++.||++|.|+.+|+|.... ..+.|++++ .||++|.|+ +++|+++
T Consensus 13 i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~------------~~i~Ig~~~---~Ig~~~~I~~~~~~~siIg~~ 77 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY------------GRLIVQAGA---NLQDGCIMHGYCDTDTIVGEN 77 (196)
T ss_pred cCCCeEECCCCEEECceEECCCCEECCCCEEecCC------------ccEEECCCC---EECCCCEEeCCCCCCCEECCC
Confidence 344444444 3332 67889999999888887642 012222333 566666663 5899999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.++++.+ ..+++.+++|.++.|.+| ++||++++|++||+|
T Consensus 78 ~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 78 GHIGHGAILHG-CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred CEECCCcEEee-EEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 99999998865 558888889999999888 889999999999875
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.4e-10 Score=104.03 Aligned_cols=29 Identities=41% Similarity=0.717 Sum_probs=15.3
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
++.|+++|+|++ +++|+.+++||++|.|.
T Consensus 96 ~~~ig~~~~i~~----~~~i~~~~~ig~~~~i~ 124 (197)
T cd03360 96 SAVIGEGCVIMA----GAVINPDARIGDNVIIN 124 (197)
T ss_pred CCEECCCCEEcC----CCEECCCCEECCCeEEC
Confidence 345566655554 34555555555555554
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=108.36 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=77.3
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----------
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----------- 467 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----------- 467 (520)
.|+++++|.+ +.|. ++.||++|.|+.+|.|.... .++.||+++ .|++++.|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~------------~~I~IG~~~---~I~d~~vI~~~~~~~~g~~~ 118 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV------------NSISVGSGT---NIQDNSLVHVAKTNLSGKVL 118 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC------------CceEECCCC---EECCCCEEEeCCCcccCCCC
Confidence 3555666655 4443 67788888888888876542 123444455 677777774
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++||++|.||.+++|. ++.+++.+.++.++.|.+| ++|+++++|++|++|
T Consensus 119 ~siIG~~v~IG~~avI~-g~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLH-GCTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CcEeCCCCEECCCceec-CCEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 68999999999999885 4678888889999999999 899999999999875
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=88.44 Aligned_cols=67 Identities=24% Similarity=0.453 Sum_probs=60.9
Q ss_pred cccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCC
Q 010006 396 DVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 474 (520)
Q Consensus 396 ~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 474 (520)
.+.+++|+++|.|+. +.|.+++|++++.|+++|.|.+++++++ +.|++++.+.+|+|+++
T Consensus 13 ~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~~v~~~ii~~~ 73 (81)
T cd04652 13 SIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKCKLKDCLVGSG 73 (81)
T ss_pred EEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCCEEccCEECCC
Confidence 346789999999998 9999999999999999999999999876 58999999999999999
Q ss_pred CEECCCc
Q 010006 475 ARIGDNV 481 (520)
Q Consensus 475 ~~Ig~~~ 481 (520)
++|+++.
T Consensus 74 ~~i~~~~ 80 (81)
T cd04652 74 YRVEAGT 80 (81)
T ss_pred cEeCCCC
Confidence 9999874
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=117.58 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCc
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGAD 439 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~ 439 (520)
.++.||++|.|++ |.|. +++||++|.|+++|+|.++++++++
T Consensus 267 ~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~ 310 (459)
T PRK14355 267 RGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDV 310 (459)
T ss_pred CCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCC
Confidence 4566777777776 7666 6889999999999999888777663
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=91.82 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=61.9
Q ss_pred EECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 401 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 401 ~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
.|+++|.| .+|+||.+|.|+ ++.|++++++++ +.|++++.|.+++|++++.||++
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~ 57 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRN 57 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCC
Confidence 45555554 488999999999 999999999886 58999999999999999999999
Q ss_pred cEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCC
Q 010006 481 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 517 (520)
Q Consensus 481 ~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~g 517 (520)
+.+.+ +.|+++ +.|++++.|..+
T Consensus 58 ~~i~~-------------siig~~-~~Ig~~~~v~~~ 80 (104)
T cd04651 58 AVIRR-------------AIIDKN-VVIPDGVVIGGD 80 (104)
T ss_pred CEEEe-------------EEECCC-CEECCCCEECCC
Confidence 99964 555555 555555555443
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=102.92 Aligned_cols=102 Identities=13% Similarity=0.274 Sum_probs=71.9
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-----cceEECCC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 474 (520)
|+++++|.+ +.|. +..||++|.|+++|.|.... ..+.||+++ .||++|+| .+++|+++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~------------g~i~Ig~~t---~Ig~~~~I~~~~~~~siIg~~ 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDF------------GRIVLKEGA---NIQDNCVMHGFPGQDTVVEEN 75 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccC------------CceEECCCC---EECCCeEEeccCCCCCeECCC
Confidence 455555554 4333 67888888888888886430 123334444 67888877 46889999
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.||.+++|.+ +.+++.+.++.++.|.++ ++||++++|++|++|
T Consensus 76 ~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 76 GHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 99998888754 677777778777777777 778888888888754
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=105.64 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.+.+||||||+|+||+ .+|+|+|+.|+ |||+|+++.+... +++|+|+++... .. + +.+
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~----~~~-------- 217 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-G----TPL-------- 217 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-h----ccc--------
Confidence 5789999999999998 69999999987 9999999988764 789988885421 10 0 000
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHH
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAH 228 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h 228 (520)
..+.++.. ..+..|...+|+.++.... .+++++++||+ +.+.+ +..+++.+
T Consensus 218 ~~v~~I~D------~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 ENLPTLPD------RGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred cCCeEEeC------CCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 00222221 1223799999999997654 35789999999 66655 77777765
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=99.35 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=18.7
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
++||++|.|...+.+.+...+++++.|+.+ ++|.++..|++++
T Consensus 84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~Igag-svV~~~~~i~~~~ 126 (164)
T cd04646 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAG-CKLPSSEILPENT 126 (164)
T ss_pred eEECCCCEEeCCCEECCCCEECCCCEEeCC-eEECCCcEECCCe
Confidence 444444444444444444444444444444 4444444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-09 Score=114.74 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=78.2
Q ss_pred cCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccc-ccccc
Q 010006 375 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFL 450 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~-~~~~~ 450 (520)
.+.+.|...+.+..++.+. .+.+.+++||++|.|+. +.|. +|+||++|.||++|.|.++.+..+....... -.+++
T Consensus 278 ~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ 357 (446)
T PRK14353 278 EPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDAT 357 (446)
T ss_pred CCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcE
Confidence 3334444444444444443 34456799999999998 8888 8999999999999999887776654322111 13456
Q ss_pred ccCCCcceeeCCCCEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 451 AAKGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 451 ~~~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
||+++ .||.++++. +++||+++.||.++.|.+ ..+++++++|+++
T Consensus 358 ig~~~---~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~------~~~Ig~~~~ig~~ 410 (446)
T PRK14353 358 IGAGA---NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVA------PVTIGDGAYIASG 410 (446)
T ss_pred EcCCc---EECCceeeeccccccCCCcEECCCcEECCCCEEeC------CCEECCCCEECCC
Confidence 66666 677776551 466666666666666654 4555666666666
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-08 Score=97.24 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=125.7
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHh--------CCCCeEEEEeccChhHHHHHHHHhh
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSRAY 158 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~--------~gi~~I~Iv~~~~~~~i~~~l~~~~ 158 (520)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.. .+|..+++...+..+++.+++++..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999996 68999999998 76 999999999976 3466666666778889999999843
Q ss_pred -hccCCCCcCCCeEEEeeccc-----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce-eccc-cHHHH
Q 010006 159 -ASNMGGYKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYRM-DYERF 224 (520)
Q Consensus 159 -~~~~~~~~~~~~v~vl~~~~-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~l 224 (520)
....-..|..+.+..+.... ......| +.|.++-+... ++.+...+.+++.+...|. +... |.. +
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-F 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-H
Confidence 11100011111111111110 0011123 35666554422 2334445678899999999 4444 433 5
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (520)
+-.+...+.++..-+.+....+ ..-|.+...++| .++++.+-|......... . +.............++...
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~--~---~~~~~~~~~~~~~~n~~~~ 229 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVN--N---QIPKDIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcccc--c---cCcCCCCceeeccceEEEE
Confidence 6666677778776666544322 334555543224 477777766543221000 0 0000011122456789999
Q ss_pred EEeHHHHHHHHh
Q 010006 303 VISKDVMLNLLR 314 (520)
Q Consensus 303 ifs~~vl~~ll~ 314 (520)
+|+.+.+.++++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999887765
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=85.88 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=53.2
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 479 (520)
+.|++++.|++ +++||++|.||++|+|++++++++ +.|++++.|.++++++++.||+
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45566666653 789999999999999999999886 5899999999999999999999
Q ss_pred CcEEec
Q 010006 480 NVKIVN 485 (520)
Q Consensus 480 ~~~i~~ 485 (520)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988864
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=103.67 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=19.2
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+++|++||.||.+|.|.++..+++.+.++.|++|+.+
T Consensus 173 ~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 173 PTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 3566666666666666554444444444444444444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=114.67 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=84.9
Q ss_pred CccccCCCcCCCceee-----------cccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccc
Q 010006 378 APIYTQPRYLPPSKML-----------DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETD 444 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~-----------~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~ 444 (520)
..+...+.+.+.+.+. .+.+.+++|+++|.|++ |.|. +++||.+|.|++++.|.++++.++......
T Consensus 281 ~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~ 360 (450)
T PRK14360 281 TVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHL 360 (450)
T ss_pred cEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccc
Confidence 3455555555555443 33345788999999998 8887 799999999999999988877665433221
Q ss_pred c-cccccccCCCcceeeCCCCEEcc--eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcC
Q 010006 445 A-DRRFLAAKGSVPIGIGKNSHIKR--AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 510 (520)
Q Consensus 445 ~-~~~~~~~~~~~~~~Ig~~~~i~~--~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~ 510 (520)
. -..+.||+++ .||.++.+.+ .+-+.+++||++|.|+..+.+..+.+++++++|++| ++|-+
T Consensus 361 ~~~~~~~i~~~~---~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~-~~v~~ 425 (450)
T PRK14360 361 SYIGDATLGEQV---NIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAG-STITK 425 (450)
T ss_pred eecCCceecCCc---EECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCC-CEECc
Confidence 1 0223344444 3444444321 111447888888888888888888888888888888 55444
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=114.86 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=48.2
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
.++.||++|.|++ +.|. +++||++|.|+++|.|+++++++++..+...-.++.+++++ .||+++.+. +++|+++
T Consensus 270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~---~Ig~~~~i~~~~vIg~~ 346 (482)
T PRK14352 270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGA---TVGPFTYLRPGTVLGEE 346 (482)
T ss_pred CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCC---EECCCeEecCCcEEcCC
Confidence 3456666666666 6655 57777777777777777766666544432222455555555 566666665 5666555
Q ss_pred CEECCC
Q 010006 475 ARIGDN 480 (520)
Q Consensus 475 ~~Ig~~ 480 (520)
+.||.+
T Consensus 347 ~~ig~~ 352 (482)
T PRK14352 347 GKLGAF 352 (482)
T ss_pred CEECCc
Confidence 555533
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=101.15 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=30.4
Q ss_pred ccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcc
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 432 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~ 432 (520)
+++.+.+. .+.+.+++.+. ++.+.+++||++|.|+. |.+.++.||++|.|++++.|..
T Consensus 11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 34444442 23444444443 34445556666666665 5555566666666666665543
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-09 Score=98.34 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=19.6
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.|+.++.+. ++.|++++.||.++++.. ...+++++.|+.+
T Consensus 143 ~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~~i~~~~~i~~~ 183 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEGVFIGAGATIIQ------GVTIGAGAIVGAG 183 (201)
T ss_pred EECCCCEEeCCcEECCCCEECCCCEEeC------CCEECCCCEECCC
Confidence 455555554 455555555555555543 2334444444444
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=113.67 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=55.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
.++.||++|.|++ +.|. ++.||++|.|+++|.|.++++++++......-.++.+|+++ .||++++|. +++|+++
T Consensus 264 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~---~Ig~~~~i~~~~~Ig~~ 340 (458)
T PRK14354 264 ADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNV---TVGPFAHLRPGSVIGEE 340 (458)
T ss_pred CCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCc---EECCceEecCCCEEeCC
Confidence 3456677777766 6665 57777777777777777777766655543333556666666 677777776 6777777
Q ss_pred CEECCCcEEe
Q 010006 475 ARIGDNVKIV 484 (520)
Q Consensus 475 ~~Ig~~~~i~ 484 (520)
++||.++.|.
T Consensus 341 ~~i~~~~~i~ 350 (458)
T PRK14354 341 VKIGNFVEIK 350 (458)
T ss_pred cEECCceEEe
Confidence 7776666553
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=102.29 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=37.9
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-cceEECCCCEEC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIG 478 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig 478 (520)
|+.|+.|++ +.|. ++.||.+|.||++|+|..++.+++.. +.....+++||+++ .||.++.| .+++|++++.||
T Consensus 129 V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIgDnv---~IGa~s~I~~Gv~IGdgavIg 204 (272)
T PRK11830 129 VNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIEDNC---FIGARSEVVEGVIVEEGSVLG 204 (272)
T ss_pred ECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEcCCC---EECCCCEEcCCCEECCCCEEc
Confidence 333444443 3333 45555555666666665555554321 11111234455554 45555554 255555555555
Q ss_pred CCcEEecC
Q 010006 479 DNVKIVNS 486 (520)
Q Consensus 479 ~~~~i~~~ 486 (520)
+++.|..+
T Consensus 205 ag~vV~~g 212 (272)
T PRK11830 205 MGVFLGQS 212 (272)
T ss_pred CCCEEcCC
Confidence 55555443
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-09 Score=95.88 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=65.6
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-----eEECC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDK 473 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~ 473 (520)
+++|+++|.|.+ +..||+++.|+++|.|..+. .++.||+++ .|++++.|.. ++|++
T Consensus 5 ~~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~------------~~~~IG~~~---~I~~~~~I~~~~~~~~~Ig~ 65 (153)
T cd04645 5 SAFIAPNATVIG----DVTLGEGSSVWFGAVLRGDV------------NPIRIGERT---NIQDGSVLHVDPGYPTIIGD 65 (153)
T ss_pred CeEECCCCEEEE----eEEECCCcEEcCCeEEECCC------------CceEECCCC---EECCCcEEecCCCCCeEEcC
Confidence 344555555543 67788888888888777541 123344444 6777777765 58888
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.|+.++++.+ ..+++.+.++.++.+..+ ++|++++.|+++++
T Consensus 66 ~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 66 NVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred CcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 888888888765 556666666666666666 66666666666654
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=97.25 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=44.2
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECC
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDK 473 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~ 473 (520)
.|+++|.|.+ +.|. +..||++|.|+++|.|.... ..++.||+++ .|++++.|. .+.|++
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~-----------~~~v~IG~~~---~I~~~~~i~~~~~~~v~Ig~ 69 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE-----------GTPIIIGANV---NIQDGVVIHALEGYSVWIGK 69 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCC-----------CCcEEECCCC---EECCCeEEEecCCCCEEECC
Confidence 3444444444 3333 45555555555555554320 0123333333 344444442 344444
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
++.|+.++.|.+...+++.+.++.++.|. + ++||+++.|++++
T Consensus 70 ~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~-~~Ig~~~~Ig~~s 112 (167)
T cd00710 70 NVSIAHGAIVHGPAYIGDNCFIGFRSVVF-N-AKVGDNCVIGHNA 112 (167)
T ss_pred CceECCCCEEeCCEEECCCCEECCCCEEE-C-CEECCCCEEcCCC
Confidence 44444444444433444444444443332 2 3444444444444
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=103.38 Aligned_cols=100 Identities=12% Similarity=0.246 Sum_probs=72.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----------c
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----------R 468 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----------~ 468 (520)
+.|.+++.|.+ ++.||+++.|+.+++|... . ....||+++ .|+++|+|+ +
T Consensus 66 ~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd------~------~~I~IG~~t---~Ig~~~vI~~~~~~~~~i~~~ 126 (246)
T PLN02472 66 AYVAPNVVLAG----QVTVWDGASVWNGAVLRGD------L------NKITVGFCS---NVQERCVLHAAWNSPTGLPAE 126 (246)
T ss_pred CEECCCCEEec----CEEECCCCEEcCCCEEecC------C------cceEECCCC---EECCCCEEeecCccccCCCCC
Confidence 44444444443 5677777777777766543 1 123444455 677777773 6
Q ss_pred eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|+++|.||.+|+|. .+.+++++++|.++.|.++ ++|+++++|++|++|
T Consensus 127 tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 127 TLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred cEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 8999999999999995 5788888888888888888 888888888888764
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=91.79 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=45.0
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
.+++||++|.|+. +.|. ++.||++|.|++++.|.+..+.+. .+..++.+.+++|++++
T Consensus 15 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~ 74 (119)
T cd03358 15 NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGA 74 (119)
T ss_pred CCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCc
Confidence 3577778887776 5553 567777777777666666544432 24445666777777777
Q ss_pred EECCCcEEecCC
Q 010006 476 RIGDNVKIVNSD 487 (520)
Q Consensus 476 ~Ig~~~~i~~~~ 487 (520)
.||.++.+.+..
T Consensus 75 ~Ig~~~~v~~~~ 86 (119)
T cd03358 75 SIGANATILPGV 86 (119)
T ss_pred EECcCCEEeCCc
Confidence 777777775433
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=99.62 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=62.5
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCc----cccccccccccccCCCcceeeCCCCEEc-ceEEC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGAD----YYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID 472 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~ 472 (520)
++||+++.|++ +.|. +++|--.++||++++|-....++.+ -|.-+ .-.+.||+++ .|.++++|. .+.-|
T Consensus 28 ~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge-~T~l~IG~~n---~IRE~vTi~~GT~~g 103 (260)
T COG1043 28 CIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGE-PTRLIIGDNN---TIREFVTIHRGTVQG 103 (260)
T ss_pred EEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCC-ceEEEECCCC---eEeeEEEEeccccCC
Confidence 55555555554 4444 4555555556666666555555542 11110 1223334443 344444443 22223
Q ss_pred -CCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCc
Q 010006 473 -KNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 518 (520)
Q Consensus 473 -~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gt 518 (520)
.-.+||+|+.++.++.+...+++|++|++..+. |.||+.++|+..+
T Consensus 104 ~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 104 GGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred ceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 345677777777777777777777777766552 6677777777655
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-09 Score=94.92 Aligned_cols=102 Identities=15% Similarity=0.238 Sum_probs=71.1
Q ss_pred ECCCcEEee-e-EEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEECCC
Q 010006 402 IGEGCVIKN-C-KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 474 (520)
Q Consensus 402 Ig~g~~I~~-~-~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 474 (520)
|++.++|.+ + .|.+..||+++.|..++.|+.-. .+..||+++ -|.+|+.|+ .+.||++
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~------------~~I~IG~~t---NIQDg~ViH~~~~~p~~IG~~ 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV------------EPIRIGART---NIQDGVVIHADPGYPVTIGDD 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccC------------CceEECCCc---eecCCeEEecCCCCCeEECCC
Confidence 444455554 2 22366777777777777765432 234444454 566666664 3788888
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++||.+++|.+ +.+++.+.||-|+.|.+| ++||++|+|++|++|
T Consensus 79 vtIGH~aivHG-c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV 122 (176)
T COG0663 79 VTIGHGAVVHG-CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALV 122 (176)
T ss_pred cEEcCccEEEE-eEECCCcEEecCceEeCC-cEECCCcEEccCCcc
Confidence 88888888876 788888888888888888 888888888888875
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-09 Score=94.47 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=62.5
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-----eEECCC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDKN 474 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~~ 474 (520)
++|.++++|.+ ++.||++|.|+++|.|.... .+++||+++ .|++++.|.. ++|+++
T Consensus 7 ~~i~~~~~i~~----~v~iG~~~~I~~~a~I~~~~------------~~i~Ig~~~---~Ig~~~~I~~~~~~~~~Ig~~ 67 (154)
T cd04650 7 AYVHPTSYVIG----DVVIGELTSVWHYAVIRGDN------------DSIYIGKYS---NVQENVSIHTDHGYPTEIGDY 67 (154)
T ss_pred eEECCCCEEEe----eEEECCCCEEcCCeEEEcCC------------CcEEECCCC---EECCCCEEEeCCCCCeEECCC
Confidence 44555555543 56778888888888777650 012222233 6777777763 677777
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+.|+.++++.+ ..+++.++++.++.+..+ ++|++++++++++.
T Consensus 68 ~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 68 VTIGHNAVVHG-AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CEECCCcEEEC-cEECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 77777777743 456666666666666666 66777777766654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.1e-09 Score=92.27 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=30.8
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.++|++++.||.+++|..+..+++.+.++.++.|.++ +.|+++ ++|++
T Consensus 75 ~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~-~~I~~~---~~~~~ 122 (139)
T cd03350 75 PVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS-TPIYDR---ETGEI 122 (139)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC-eEeccc---CcccE
Confidence 3667777777777777666666666666666666666 666665 55554
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=96.62 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=125.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCC--ccchhHHHHHHhHhCC-----------CCeEEEEec-cChhHHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G--~~plI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~i~~~ 153 (520)
.++.+||||||.|||| +...||+|+||++ ++|++++.++.+...+ .-.++|.++ +..+.+.++
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 3689999999999999 4778999999973 2499999999998732 124567777 778899999
Q ss_pred HHHhhhccCCC----CcCCCeEEEeeccc-----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCcee-c
Q 010006 154 LSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHL-Y 217 (520)
Q Consensus 154 l~~~~~~~~~~----~~~~~~v~vl~~~~-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l-~ 217 (520)
+.+...|++.. .+....+..+.... .+....| +.|.++-.... ++.+...+.+++.+...|.+ .
T Consensus 91 ~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 91 FKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred HHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 99854443311 01111111111110 0011112 35665544432 23344456789999999994 4
Q ss_pred cccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCce
Q 010006 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (520)
Q Consensus 218 ~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (520)
..---.++-.+.++++++.+-+.+....+ ..-|.++ .|..-+++++.|-|.......- .. .....+.
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~~----------~~-g~l~f~~ 238 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKRD----------AD-GELQYNA 238 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhccC----------cC-CcEeccc
Confidence 33223467777788899887666644222 3344444 4544567888777665432110 00 0000123
Q ss_pred eeeeEEEEeHHHHHHHHh
Q 010006 297 ASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 297 ~~~GIyifs~~vl~~ll~ 314 (520)
.+..+.+|+.+++.++++
T Consensus 239 ~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 239 GNIANHFFSLDFLEKAAE 256 (323)
T ss_pred chHhhheeCHHHHHHHHh
Confidence 344567889888887765
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.6e-09 Score=100.24 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=60.2
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
+++.+.+...+.+.+++.+. ++.+ .+++||++|.|+. +.|. +++||++|.||.+|.|.+..- ......+
T Consensus 89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~-------~~~~~~v 161 (231)
T TIGR03532 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIE-------PPSAKPV 161 (231)
T ss_pred ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccc-------cccCCCe
Confidence 34444444444555555553 3333 4678888888887 7775 788888888888888765211 0112334
Q ss_pred cccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEe
Q 010006 450 LAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIV 484 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~ 484 (520)
.||+++ .||.++.|. ++.|++++.||+++++.
T Consensus 162 ~IGd~v---~IG~gsvI~~g~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 162 VIEDNV---LIGANAVILEGVRVGKGAVVAAGAIVT 194 (231)
T ss_pred EECCCc---EECCCCEEcCCCEECCCCEECCCCEEc
Confidence 555555 566666663 66666666666666664
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=94.05 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=6.3
Q ss_pred eEECCCCEECCCcEE
Q 010006 469 AIIDKNARIGDNVKI 483 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i 483 (520)
++|+++|.||.++.+
T Consensus 151 ~~ig~~~~ig~~~~v 165 (197)
T cd03360 151 VTIGEGAFIGAGATI 165 (197)
T ss_pred cEECCCCEECCCCEE
Confidence 344444444444433
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.88 E-value=7e-09 Score=83.12 Aligned_cols=78 Identities=28% Similarity=0.350 Sum_probs=60.7
Q ss_pred EECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccccc
Q 010006 417 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARET 496 (520)
Q Consensus 417 ~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~ 496 (520)
+||+++.|+++|.|.++++..+ +.|++++.|.+++|++++.||+++.|. ...+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEEC
Confidence 4789999999999988777654 589999999999999999999999996 45556666666
Q ss_pred CCeEEccCeEEEcCCCEeC
Q 010006 497 DGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 497 ~~~~I~~~~v~Ig~~~~i~ 515 (520)
+++.|+.+ ++|++++.|+
T Consensus 61 ~~~~i~~~-~~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPG-SLISFGVVIG 78 (79)
T ss_pred CCCEECCC-CEEeCCcEeC
Confidence 66666666 5566665554
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.1e-09 Score=82.65 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=57.0
Q ss_pred ccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-eEEC
Q 010006 395 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIID 472 (520)
Q Consensus 395 ~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~ 472 (520)
+.+.+++|+++|.|++ +.|.+++|+++|.|+++|.|.+++++++ +.|++++.+.+ ++++
T Consensus 12 ~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~~i~~~~~ig 72 (79)
T cd03356 12 AIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENVRVVNLCIIG 72 (79)
T ss_pred CEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCCEEcCCeEEC
Confidence 3445689999999998 9999999999999999999999998775 57999988886 8888
Q ss_pred CCCEECC
Q 010006 473 KNARIGD 479 (520)
Q Consensus 473 ~~~~Ig~ 479 (520)
++++|++
T Consensus 73 ~~~~i~~ 79 (79)
T cd03356 73 DDVVVED 79 (79)
T ss_pred CCeEECc
Confidence 8888774
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=89.77 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=30.7
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
++.||.+|.||++|.|. +.+-+. ..+.+.||+++ .||.++.| +..|++++.||+++++.....+
T Consensus 47 ~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~~---~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 47 GVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKRC---LLGANSGI-GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CEEECCCCEECCCCEEE-EECCCC------cccCEEECCCC---EECCCCEE-eEEECCCCEECCCCEEeCCeEE
Confidence 34555555555555555 222111 11335555555 45555555 4555555555555555543333
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=108.94 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=63.5
Q ss_pred CcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCC
Q 010006 385 RYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 463 (520)
Q Consensus 385 ~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 463 (520)
.+.+++.+.++.+.+++||++|.|++ |.|.+|.||.+|.|+... |+++.+-+..+. ..+.||+++ .||.+
T Consensus 284 ~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i-----~d~~Ig~~~---~ig~~ 354 (430)
T PRK14359 284 HIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYL-----GDCEIDEGT---NIGAG 354 (430)
T ss_pred EECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccc-----cCCEECCCC---EECCC
Confidence 34444544445556777888888886 666666666666665533 333333222221 335566666 56666
Q ss_pred CEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 464 SHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 464 ~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
+.+. .++||++|.||.++.|. .+.++|++++|++| ++|-++
T Consensus 355 ~~~~~~~~~~~~~~~ig~~~~ig~~~~i~------~~~~ig~~~~i~~g-~~v~~~ 403 (430)
T PRK14359 355 TITCNYDGKKKHKTIIGKNVFIGSDTQLV------APVNIEDNVLIAAG-STVTKD 403 (430)
T ss_pred ceEccccCccCcCCEECCCeEEcCCCEEe------CCcEECCCCEECCC-CEEccc
Confidence 6553 25666666666666665 45566667777777 444333
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=87.77 Aligned_cols=217 Identities=19% Similarity=0.200 Sum_probs=138.2
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++.-|||+|-|.++|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+ +++.|.+.-.+ |..+
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~-ygak---- 66 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK-YGAK---- 66 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH-hCcc----
Confidence 466789999999999987 5999999987 99999999999998 57777666 66666554333 2111
Q ss_pred cCCCeEEEeecccCCCCCCCccCcH---HHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTA---DAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAAL 240 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~---~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~ 240 (520)
+.+..+. .-..+++ +++..++..+.. ..+.++.+.+-. |. ..+++..++.+.+.+.+..+.+.
T Consensus 67 -----~~~~Rp~------~LA~D~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 67 -----VFLKRPK------ELASDRASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred -----ccccCCh------hhccCchhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 1111111 1113333 444555544442 234477777766 44 46799999999988888777777
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+.+.++-..| . +.+|.+..+.|.|..... +-.+ -+.|..+..+|+++++.|.+ ..
T Consensus 135 e~e~~p~k~f---~-~~~~~~~~~~~~~~~~~r-rQ~L-------------pk~Y~~NgaiYi~~~~~l~e-------~~ 189 (228)
T COG1083 135 ECEHHPYKAF---S-LNNGEVKPVNEDPDFETR-RQDL-------------PKAYRENGAIYINKKDALLE-------ND 189 (228)
T ss_pred ecccchHHHH---H-hcCCceeecccCCccccc-cccc-------------hhhhhhcCcEEEehHHHHhh-------cC
Confidence 7653221222 2 234778888776643211 0011 12466788899999987752 11
Q ss_pred CCccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhccc
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~ 365 (520)
.-| +.+...|..+ ...+||++..|+..++..+..
T Consensus 190 ~~f-----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFF-----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred cee-----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 112 2344445554 458999999999999877654
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=102.71 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=78.7
Q ss_pred CccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCC
Q 010006 378 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 455 (520)
Q Consensus 378 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~ 455 (520)
+-+..++.+.+++++. ++.|+.|+||.+|.||+ +.|.+|+|.+|+.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 4555667777888886 67789999999999999 9999999999999999999999999775
Q ss_pred cceeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 456 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 456 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
+.||+++.+.+|+|+.+-+|.+..+..+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 58999999999999999999977666553
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.9e-08 Score=78.27 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=54.3
Q ss_pred cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-eEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~ 475 (520)
.+++|+++|.|+. |.|.+++|++++.|++++.|.+++++.+ +.|++++.+.. ++|++++
T Consensus 16 ~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~ 76 (80)
T cd05824 16 PNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDV 76 (80)
T ss_pred CCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCce
Confidence 5688999999987 9999999999999999999999988876 57899888885 7777777
Q ss_pred EECC
Q 010006 476 RIGD 479 (520)
Q Consensus 476 ~Ig~ 479 (520)
+||+
T Consensus 77 ~i~~ 80 (80)
T cd05824 77 TIKD 80 (80)
T ss_pred EECC
Confidence 7764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=95.00 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEEC
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~ 437 (520)
.|+.|++.+. ..+.|++|++|.+ +.|. ++.++..+.|.-+++++.|...|
T Consensus 109 ~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VG 160 (271)
T COG2171 109 VRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVG 160 (271)
T ss_pred eeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEEC
Confidence 5566666554 3455666666665 5555 55555555555555555555544
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=97.50 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=52.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-cceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig 478 (520)
+.||+|++|... .+++||++|.||++|.|..++.+++..- ....+..+||+++ .||.++.| .++.||++|.||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~-~~~~r~piIGd~V---~IGagA~Ilggi~IGd~a~IG 240 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK-ACGDRHPKIGDGV---LIGAGATILGNVKIGEGAKIG 240 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc-ccCCCccEECCCe---EECCeeEECCCCEECCCCEEC
Confidence 455666666531 1589999999999999988888876311 1112456666666 57777666 366777777777
Q ss_pred CCcEEe
Q 010006 479 DNVKIV 484 (520)
Q Consensus 479 ~~~~i~ 484 (520)
+++++.
T Consensus 241 AgSVV~ 246 (294)
T PLN02694 241 AGSVVL 246 (294)
T ss_pred CCCEEC
Confidence 776665
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-08 Score=81.01 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=45.3
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 476 (520)
+++|+++|.|++ +.|. ++.||++|.||. .|+++++++. +.|+++++|.+++|+++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 456666666665 5555 466666666654 4666666664 4677777888888888888
Q ss_pred ECCCcEEec
Q 010006 477 IGDNVKIVN 485 (520)
Q Consensus 477 Ig~~~~i~~ 485 (520)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888877765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-05 Score=85.71 Aligned_cols=209 Identities=15% Similarity=0.236 Sum_probs=124.9
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCCC-eEEEEecc-ChhHHHHHHHHhhhc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQF-NSASLNRHLSRAYAS 160 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi~-~I~Iv~~~-~~~~i~~~l~~~~~~ 160 (520)
..++.+|.||||.||||+ -.-||.|+|+...+.+++..++++.. .|.+ ..+|-+++ ..++..++|++ |++
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 367999999999999999 46899999995555899998888754 3432 23555664 45678888887 332
Q ss_pred -cCC-CCcCCC-eEEEeecccCC-------CCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceecc-ccHHH
Q 010006 161 -NMG-GYKNEG-FVEVLAAQQSP-------ENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (520)
Q Consensus 161 -~~~-~~~~~~-~v~vl~~~~~~-------~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (520)
... ..|... +..+......+ .+..| +.|.++-.... ++.+...+.+++.+.+.|.+.. .|. .
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-K 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-H
Confidence 110 001111 01111000000 11124 34555443322 3444455778999999999754 343 3
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEE
Q 010006 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (520)
Q Consensus 224 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (520)
++..+..+++++++=+.+....+.. -|.++ .|..-+++++.+-|....... . ....-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~k-gG~l~~~dgk~~lvEysqvp~e~~~~f-~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADVK-GGTLISYEGKVQLLEIAQVPDEHVNEF-K------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCCC-ccEEEEECCEEEEEEEecCCHHHHHhh-c------------ccccceeeeeeeE
Confidence 6777778888887766654332222 34443 344446888888776543210 0 0112347789999
Q ss_pred EEeHHHHHHHHh
Q 010006 303 VISKDVMLNLLR 314 (520)
Q Consensus 303 ifs~~vl~~ll~ 314 (520)
+|+-+.++++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-08 Score=90.43 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=26.9
Q ss_pred ECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 471 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 471 i~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|+++++||.++.+.....+++.++++.++.+..+ ++|+++++|++|++|
T Consensus 138 ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 138 IGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG-VTIGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 3333333333333333333444444556777777 777777777777763
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=91.86 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=122.1
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHhC------------C-CCeEEEEe-ccChhHHH
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS------------N-ISKIYVLT-QFNSASLN 151 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~~------------g-i~~I~Iv~-~~~~~~i~ 151 (520)
++.+||||||.||||+ ...||+|+||+ |+ |+++++++.+... + .-.++|.+ .+..+.+.
T Consensus 106 kvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~ 181 (482)
T PTZ00339 106 EVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTR 181 (482)
T ss_pred CeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHH
Confidence 6999999999999997 57999999994 55 9999999999864 1 12445555 47788899
Q ss_pred HHHHHhhhccCCC----CcCCCeEEEeecc--c----CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce
Q 010006 152 RHLSRAYASNMGG----YKNEGFVEVLAAQ--Q----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH 215 (520)
Q Consensus 152 ~~l~~~~~~~~~~----~~~~~~v~vl~~~--~----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~ 215 (520)
+++.+...+++.. .|..+.+..+... . ++..-.| +.|.++-.... ++.+...+.+++.+...|.
T Consensus 182 ~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN 261 (482)
T PTZ00339 182 QFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDN 261 (482)
T ss_pred HHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCc
Confidence 9998744333211 0111111111110 0 0000112 35665544432 3344445678899999999
Q ss_pred e-ccccHHHHHHHHHhcCC-cEEEEEEecCcccCcceEEEEe-CCCCCEEEeeeCCChhhhhhcccccccccCCchhhcc
Q 010006 216 L-YRMDYERFIQAHRETDA-DITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (520)
Q Consensus 216 l-~~~dl~~ll~~h~~~~a-~~tl~~~~~~~~~~~~~g~v~~-d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
+ ...---.++-.+...++ ++.-.+.+.. +...-|+++. |..-.|+++.|-+....... . ......
T Consensus 262 ~L~k~~DP~flG~~~~~~~~~~~~kvvk~~--~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~-~---------~~~g~l 329 (482)
T PTZ00339 262 ILAKVLDPEFIGLASSFPAHDVLNKCVKRE--DDESVGVFCLKDYEWQVVEYTEINERILNND-E---------LLTGEL 329 (482)
T ss_pred ccccccCHHHhHHHHHCCchhheeeeecCC--CCCceeEEEEeCCcccEEEEeccChhhhhcc-c---------ccCCee
Confidence 5 43322345666666666 6544443322 2344566654 33346888888665432110 0 000111
Q ss_pred CCceeeeeEEEEeHHHHHHHHh
Q 010006 293 MPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~ 314 (520)
.-...++..++|+.++|.++.+
T Consensus 330 ~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred cccccceEEEEEEHHHHHHHhh
Confidence 1235678899999999987654
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.4e-08 Score=83.58 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=16.6
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.++.||++|.|.+.+.+.+...+++++.|+.+
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccC
Confidence 35566666666654444444444444444444
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=89.54 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~ 431 (520)
..||++|.|++ +.|. .+.||++|.|+++|.|.
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 45566666665 5544 46777777777777764
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=86.69 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=36.4
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-------------ceEECCCCEECCCc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-------------RAIIDKNARIGDNV 481 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------------~~ii~~~~~Ig~~~ 481 (520)
+..||+++.|+++|.|.... .++.+|+++ .|++++.|+ .++|++++.||+++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~------------~~v~IG~~~---~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDL------------ATVSIGRYC---ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CEEECCceEEcCCCEEeCCC------------cceEECCCc---EECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 45566666666666665431 122233333 455555543 24566677776666
Q ss_pred EEecCCCcCCcccccCCeEEccC
Q 010006 482 KIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 482 ~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
++.+ ..++...++++++.|+++
T Consensus 86 ~i~~-~~Ig~~v~Ig~~~~Ig~~ 107 (161)
T cd03359 86 VVNA-AQIGSYVHIGKNCVIGRR 107 (161)
T ss_pred EEEe-eEEcCCcEECCCCEEcCC
Confidence 6543 333344444444444443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=77.53 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=39.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
.+++|++++.|++ +.+. .++||+++.|+++|.|.+.+.++. ++ .||. .|.+|+|.+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~---------------~~---~Ig~--~i~~svi~~~~ 69 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGP---------------TC---KIGG--EVEDSIIEGYS 69 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECC---------------CC---EECC--EECccEEcCCC
Confidence 4566777777776 5554 467777777777777665444332 22 4443 34566666666
Q ss_pred EECCCcEEe
Q 010006 476 RIGDNVKIV 484 (520)
Q Consensus 476 ~Ig~~~~i~ 484 (520)
.|+.++.|.
T Consensus 70 ~i~~~~~lg 78 (101)
T cd05635 70 NKQHDGFLG 78 (101)
T ss_pred EecCcCEEe
Confidence 655555554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=92.85 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=5.8
Q ss_pred EEEcCCCEeCCCc
Q 010006 506 VTIIKDALIPSGT 518 (520)
Q Consensus 506 v~Ig~~~~i~~gt 518 (520)
+.||++++|++|+
T Consensus 267 I~IGd~~iIGAGa 279 (341)
T TIGR03536 267 IPLGDRCTVEAGL 279 (341)
T ss_pred eEECCCCEECCCC
Confidence 3344444444444
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=92.20 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=8.0
Q ss_pred EEEcCCCEeCCCcc
Q 010006 506 VTIIKDALIPSGTI 519 (520)
Q Consensus 506 v~Ig~~~~i~~gtv 519 (520)
+.||++|+|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 44566666666554
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=91.82 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=47.8
Q ss_pred ceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~ 476 (520)
.+.||+|++|+. + +.+||++|.||++|.|...+.+++...+. ..+...||+|+ .||.|+.|. ++.||+||.
T Consensus 147 ~a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~V---~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 147 AAKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREGV---MIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred cceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCCc---EEcCCCEEcCCCEECCCCE
Confidence 456666666664 2 45888888888888887777766421110 11334555555 566666554 556666666
Q ss_pred ECCCcEEe
Q 010006 477 IGDNVKIV 484 (520)
Q Consensus 477 Ig~~~~i~ 484 (520)
||+++++.
T Consensus 220 IGAgSvV~ 227 (273)
T PRK11132 220 IGAGSVVL 227 (273)
T ss_pred ECCCCEEC
Confidence 66666554
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-07 Score=83.90 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.||++++|+.. .+++||++|.||++|.|..++.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 445555555530 1356677777777777766666654
|
Cysteine biosynthesis |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=86.63 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=32.5
Q ss_pred ccCCCcCCCceeecccccceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 381 YTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 381 ~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
...+.+.|+..+.. -.++.||++++|+. |.|. +..||++|.|+++|.|..
T Consensus 59 g~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred CCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 34455566655431 14577888888886 6664 367888888888887753
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-07 Score=95.56 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=40.0
Q ss_pred CcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEE
Q 010006 405 GCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 483 (520)
Q Consensus 405 g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 483 (520)
.+.|++ |.|.+|+||++|+|+ +.|++++++++ +.|+++|.|.+|+|++++.||+++.+
T Consensus 278 p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~~~~~i 336 (369)
T TIGR02092 278 PTYYAENSKVENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIGEGAHL 336 (369)
T ss_pred CcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEECCCCEE
Confidence 333333 444467777777775 34677776665 46777777777777777777777777
Q ss_pred ec
Q 010006 484 VN 485 (520)
Q Consensus 484 ~~ 485 (520)
.+
T Consensus 337 ~~ 338 (369)
T TIGR02092 337 EN 338 (369)
T ss_pred EE
Confidence 64
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-07 Score=96.95 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccccccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 450 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~ 450 (520)
.++.+.+.+ ..+.+.+++.+. +.+.+++||++|.|+. |.|.+|+|+++|.|+++|.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 455566666 345677777764 3467899999999998 9999999999999999999999888765
Q ss_pred ccCCCcceeeCCCCEEcc-----eEECCCCEECCCcEE
Q 010006 451 AAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKI 483 (520)
Q Consensus 451 ~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i 483 (520)
+.|++++.+.+ .+||++++|+++++|
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 47888888876 788888888888766
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=76.96 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=24.0
Q ss_pred EECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 401 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.||++|+|++ +.|. ++.||++|.|+++|.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4566666665 5454 4888999999999888876
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-07 Score=92.56 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=53.3
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||.|++|... .+++||+++.||++|.|..++.+++...+.. .+.+.||+|+ .||.++.|. ++.||+++.||
T Consensus 233 a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~V---~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 233 AKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDGV---LIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred CEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCCe---EECCceEEECCeEECCCCEEC
Confidence 445666666531 1467888888888888877777765322211 2457777777 678887774 77788888888
Q ss_pred CCcEEec
Q 010006 479 DNVKIVN 485 (520)
Q Consensus 479 ~~~~i~~ 485 (520)
+++++..
T Consensus 307 AgSVV~~ 313 (360)
T PLN02357 307 AGSVVLK 313 (360)
T ss_pred CCCEECc
Confidence 8887764
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=94.79 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCC
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 480 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 480 (520)
+.+.++|++ +.|.+|+||++|.|+.+ .|.+++++.+ +.|+++|+|.+|+|++++.||.+
T Consensus 280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~ 339 (361)
T TIGR02091 280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRG 339 (361)
T ss_pred CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCC
Confidence 344455555 45556777777777765 6666666554 46777777777777777777777
Q ss_pred cEEe
Q 010006 481 VKIV 484 (520)
Q Consensus 481 ~~i~ 484 (520)
+.+.
T Consensus 340 ~~l~ 343 (361)
T TIGR02091 340 AVIR 343 (361)
T ss_pred CEEe
Confidence 7775
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-07 Score=82.77 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=23.4
Q ss_pred ceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 399 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
++.||++|+|+. +.|. +..||++|.|+++|.|..
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 456777777776 5553 467888888888887754
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=93.60 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=66.9
Q ss_pred CCCcCCCceeecccc-cceEECCCcEEeeeEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceee
Q 010006 383 QPRYLPPSKMLDADV-TDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 460 (520)
Q Consensus 383 ~~~~~~~~~i~~~~i-~~~~Ig~g~~I~~~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I 460 (520)
.+.+.+.+.+.++.| .+++||++|.|+++.|. +|+||++|.|+ +|.|++++++++ +.|
T Consensus 254 ~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~-------------------~~i 313 (353)
T TIGR01208 254 RVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAEVEHSIVLDE-------------------SVI 313 (353)
T ss_pred CEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEe-eeEEEeeEEcCC-------------------CEE
Confidence 344555555544444 66899999999986666 89999999998 799999999876 478
Q ss_pred CCC-CEEcceEECCCCEECCCcEEec
Q 010006 461 GKN-SHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 461 g~~-~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
+.+ +++.+++|+++++|+.++.+.+
T Consensus 314 ~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 314 EGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred cCCcceeecCEEcCCCEECCCccccc
Confidence 888 4889999999999999988863
|
Alternate name: dTDP-D-glucose synthase |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-07 Score=72.41 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=14.7
Q ss_pred CCeEEccCeEEEcCCCEeCCCccC
Q 010006 497 DGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 497 ~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.++.|..+ +.|+++++|+++++|
T Consensus 55 ~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 55 ANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred CCCEEeCC-CEECCCCEECcCcEe
Confidence 35555555 677777777777654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-07 Score=79.02 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=16.7
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
.+.||+|++|.. +++|..++.||++|.|+
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iIn 41 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMVE 41 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEEC
Confidence 455666666664 44555555555555554
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-07 Score=81.42 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=72.7
Q ss_pred cceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEE
Q 010006 398 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 477 (520)
..++|.+||+|.+ .+.+..+|..|.++.+|.|++..-.=+ .--+-.+.+||+.+ .|++.|.+..+.|+..+.+
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdhV---FieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDHV---FIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhc---CCceeeeeeecceE---EEecceEeehhhheeeeEe
Confidence 4588999999987 334788999999999999988753211 01122466777776 7888888888888888888
Q ss_pred CCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 478 GDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 478 g~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
|+|++|++ +|++++- +.|.+++++|+.++
T Consensus 111 GknaviGr------------rCVlkdC-c~ild~tVlPpet~ 139 (184)
T KOG3121|consen 111 GKNAVIGR------------RCVLKDC-CRILDDTVLPPETL 139 (184)
T ss_pred ccceeEcC------------ceEhhhh-eeccCCcccCcccc
Confidence 88888877 4555555 55555555555543
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.1e-07 Score=82.98 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=21.3
Q ss_pred cceEECCCcEEee-eEEee---eEECCCCEECCCCEEc
Q 010006 398 TDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIE 431 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~---s~Ig~~~~Ig~~~~I~ 431 (520)
.++.||++++|+. |.|.+ ..||++|.|+++|.|.
T Consensus 72 ~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~ 109 (183)
T PRK10092 72 YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIY 109 (183)
T ss_pred CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEE
Confidence 3566677776665 54442 2677777777777665
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.6e-07 Score=83.94 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=12.4
Q ss_pred eeEECCCCEECCCCEEc
Q 010006 415 HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~ 431 (520)
...||+++.|++++.|.
T Consensus 65 ~i~IG~~v~Ig~~v~I~ 81 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIA 81 (192)
T ss_pred eEEECCCCEECCCcEEc
Confidence 46777777777777775
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-07 Score=70.87 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=25.2
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEE
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
.|+++|.|++ +.|. ++.||++|.|+++|.|.++..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 38 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG 38 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence 4666666665 5555 488888888888888876643
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=95.79 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=13.6
Q ss_pred eEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 411 CKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 411 ~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.|.+|.||++|.| ++|.|++++++++
T Consensus 304 ~~~~~~~ig~~~~i-~~~~i~~svi~~~ 330 (429)
T PRK02862 304 ATITESIIAEGCII-KNCSIHHSVLGIR 330 (429)
T ss_pred cEEEeCEECCCCEE-CCcEEEEEEEeCC
Confidence 34445555555555 4555555544443
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-07 Score=90.57 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=50.2
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||+|++|... .+++||.+|.||++|.|..++.++....+. .++..+||+|+ .||.|+.|- ++.||+|+.||
T Consensus 212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V---~IGagA~IlG~V~IGd~aiIG 285 (355)
T PLN02739 212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGA---LLGACVTILGNISIGAGAMVA 285 (355)
T ss_pred ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCcC-CCCCcEECCCC---EEcCCCEEeCCeEECCCCEEC
Confidence 456777777630 156777777777777777666666432111 12456677777 677777764 67777777777
Q ss_pred CCcEEe
Q 010006 479 DNVKIV 484 (520)
Q Consensus 479 ~~~~i~ 484 (520)
.|+++.
T Consensus 286 AGSVV~ 291 (355)
T PLN02739 286 AGSLVL 291 (355)
T ss_pred CCCEEC
Confidence 777775
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.1e-07 Score=95.02 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=47.6
Q ss_pred EEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 412 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 412 ~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.+.+|+||.+|.| ++|.|++|+++.+ |.||+++.|++|+|+++|+||+++.|.+
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 4568999999999 7899998888775 5899999999999999999999999964
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-07 Score=85.46 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=38.4
Q ss_pred ccCCCccccCCCcCCCceeec-ccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc
Q 010006 374 YDRSAPIYTQPRYLPPSKMLD-ADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~-~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.|.+.+-..+.+.+++.+-. +.| -++.++++|.|.. +++. +.+||+||.||-++.|..
T Consensus 111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G 173 (271)
T COG2171 111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG 173 (271)
T ss_pred ecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE
Confidence 345555666666666665542 444 3588888888887 6555 467777777777777665
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-07 Score=88.42 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=19.6
Q ss_pred ceEECCCcEEeeeEEeeeEEC--CCCEECCCCEEcccEEEC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVG--LRSCISEGAIIEDTLLMG 437 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig--~~~~Ig~~~~I~~~~i~~ 437 (520)
.+.|++++.||. ++.|+ .++.||++|+|++.+.+.
T Consensus 141 gidI~~~a~IG~----g~~I~h~~givIG~~a~IGdnv~I~ 177 (273)
T PRK11132 141 QVDIHPAAKIGR----GIMLDHATGIVIGETAVIENDVSIL 177 (273)
T ss_pred eeEecCcceECC----CeEEcCCCCeEECCCCEECCCCEEc
Confidence 456666666665 33333 345666666666654443
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=86.35 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.3
Q ss_pred eeEECCCCEECCCCEE
Q 010006 415 HSVVGLRSCISEGAII 430 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I 430 (520)
+++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555555
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-07 Score=81.76 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=59.6
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
.+.||.|.+|... ...+||+-+.||++|.|..++.+|..-=+.. .+.-+||+|+ .||.++.|- +-.||+|+.|
T Consensus 73 ~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V---~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 73 GAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGV---YIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred CCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCe---EECCCCEEEcceEECCCCEE
Confidence 3557777777751 1578888889999998888888887433332 3566788887 688888764 7888888888
Q ss_pred CCCcEEec
Q 010006 478 GDNVKIVN 485 (520)
Q Consensus 478 g~~~~i~~ 485 (520)
|+|+++..
T Consensus 147 GA~sVVlk 154 (194)
T COG1045 147 GAGSVVLK 154 (194)
T ss_pred CCCceEcc
Confidence 88888864
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-06 Score=80.27 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=14.2
Q ss_pred ECCCcEEee-eEEe---eeEECCCCEECCCCEE
Q 010006 402 IGEGCVIKN-CKIH---HSVVGLRSCISEGAII 430 (520)
Q Consensus 402 Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I 430 (520)
+|+++.|.. +.+. +..||+++.|+.+|.|
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I 90 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTI 90 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEE
Confidence 566666665 3321 3444444444444444
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-05 Score=75.55 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=123.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEecc-ChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQF-NSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~~-~~~~i~~~l~~~~~~~ 161 (520)
.++.+|+||||.||||+ ...||.|+||..++++++..++++.. .|. =..+|-+++ .+++..++|++ +++.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46889999999999997 57899999996666999999999854 332 234555654 45778889987 3211
Q ss_pred -CC-CCcCCCeEEEeec------cc--CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceecc-ccHHHH
Q 010006 162 -MG-GYKNEGFVEVLAA------QQ--SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (520)
Q Consensus 162 -~~-~~~~~~~v~vl~~------~~--~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (520)
.. ..|..+.+.-+.. .+ .+....| +.|.++-.... ++.+...+.+++.+.+.|.+.. .|. .+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~ 156 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI 156 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence 00 0011000000000 00 0011112 34554433322 2333445678999999999755 342 37
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (520)
+..+..+++++++=+.+....+ ..-|.+. .|..-+|+++.|-|....... . ....-.+.+++.++
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~~-~------------~~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEF-K------------SIKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHhh-c------------CcccceEEEEeEEE
Confidence 7778888999877665543322 2344443 344446888888877543210 0 00112367889999
Q ss_pred EeHHHHHHHHhh
Q 010006 304 ISKDVMLNLLRD 315 (520)
Q Consensus 304 fs~~vl~~ll~~ 315 (520)
|+-+.|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999877653
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=87.82 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEE
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
+++-+..++.+.+ .|.+|+|+.|+.|+. |.|.+|+|..+|.||++|+|+++++
T Consensus 295 ~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aII 348 (393)
T COG0448 295 SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAII 348 (393)
T ss_pred eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEe
Confidence 3444555555555 566777777777776 7777777777777777777766655
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=92.25 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCC
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGK 462 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 462 (520)
+.+.+++.+.++.|.+++|+++|.|++ |.|.+|+|........+.. .+.+...+ ...+.||+++ .|+
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~--~~~~~~~~------~~~~~Ig~~~---~i~- 383 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEE--IASLLAEG------KVPIGIGENT---KIR- 383 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccc--cccccccC------CcceEECCCC---EEc-
Confidence 345555555444455566666666665 5555444422111111111 11221110 0123678887 454
Q ss_pred CCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCC-eEEccCeEEEcCCCEe
Q 010006 463 NSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDG-YFIKSGIVTIIKDALI 514 (520)
Q Consensus 463 ~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~-~~I~~~~v~Ig~~~~i 514 (520)
+++|. ++.||+++.|+...-+.....++++.++++| +.|+.+ +.|..+++|
T Consensus 384 ~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 436 (436)
T PLN02241 384 NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKN-AVIPDGTVI 436 (436)
T ss_pred ceEecCCCEECCCcEEecccccCCccccccccEEeCCEEEEcCC-cEeCCCCCC
Confidence 67775 7888888888877777777777777778888 688888 777777764
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=80.27 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=24.4
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
+.||++|.|.+ +.|. +..||++|.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 55677777766 5554 478889999988888874
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.7e-05 Score=71.28 Aligned_cols=177 Identities=23% Similarity=0.306 Sum_probs=103.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
.|||+|-|.++||. -|.|.+++|+ |||+|+++.+.+++ +++|+|.| +.+++.+.+.+ +. .
T Consensus 1 iaiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~-~g---------~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE-YG---------A 61 (217)
T ss_dssp EEEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH-TT---------S
T ss_pred CEEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH-cC---------C
Confidence 38999999999998 4999999997 99999999999975 79998888 56677776665 21 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCc-EEEEEEecCc--
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDAD-ITVAALPMDE-- 244 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~-~tl~~~~~~~-- 244 (520)
.+...... . ..++......+.....+ ..+.++.+.||. |.+. .+.++++.+.+...+ +.-...+...
T Consensus 62 ~v~~~~~~---~----~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 133 (217)
T PF02348_consen 62 KVIFRRGS---L----ADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSSV 133 (217)
T ss_dssp EEEE--TT---S----SSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSHH
T ss_pred eeEEcChh---h----cCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccchh
Confidence 12222111 1 13343333333333332 334788899999 5554 488999999888765 3222333221
Q ss_pred --ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHH
Q 010006 245 --KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD 307 (520)
Q Consensus 245 --~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~ 307 (520)
.+.... ....+.++....+.+.+.....+... .....++...++|.++..
T Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 134 EIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRNPE------------EFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp HHTSTTST-EEEECTTSBEEEEESSESSECHHHHC------------SSSSTEEEEEEEEEEEHH
T ss_pred hcccccce-EEEeccccchhhcccCCCcccccccc------------cccccccccccccccccc
Confidence 112222 22334445555555544432211100 000124678999999997
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=89.70 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.8
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
..+.+.+++.+.++.|.+++|+++|.|+. |.|.+|+|+++|.|+++|.|.+++++.+
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 34556666666556666777777777776 7777777777777777777777666543
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=69.62 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=34.4
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE---EcceEECCCCE
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDKNAR 476 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~~~~ 476 (520)
+.|+++++|+.. ..++||+++.||++|.|.+.+. |++++. +..++|++++.
T Consensus 9 ~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~------------------------i~~~~~~~~~~~~~Ig~~~~ 62 (101)
T cd03354 9 AKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVT------------------------LGGKGKGGGKRHPTIGDNVV 62 (101)
T ss_pred CEECCCEEECCC--CeEEECCCCEECCCCEEcCCCE------------------------ECCCccCCcCCCCEECCCcE
Confidence 444444444420 1456777777777777654443 333332 45667777777
Q ss_pred ECCCcEEec
Q 010006 477 IGDNVKIVN 485 (520)
Q Consensus 477 Ig~~~~i~~ 485 (520)
|+.++.+.+
T Consensus 63 Ig~~~~i~~ 71 (101)
T cd03354 63 IGAGAKILG 71 (101)
T ss_pred EcCCCEEEC
Confidence 777776654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-06 Score=78.37 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=23.6
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.++|+++|.||.+++|.+. .++|+++.|+++ ++|-++ ||++++
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~------v~IG~~~~Iga~-s~V~~d--vp~~~~ 155 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGN------IEVGENAKIGAN-SVVLKD--VPPGAT 155 (162)
T ss_pred CCEECCCcEEcCCCEEECC------cEECCCCEECCC-CEECCC--CCCCCE
Confidence 4577777777777777643 344445555555 333332 344443
|
Cysteine biosynthesis |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-06 Score=88.25 Aligned_cols=79 Identities=30% Similarity=0.375 Sum_probs=59.9
Q ss_pred ccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcc
Q 010006 379 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 457 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
.+...+.+.+++.+. .+++||++|.|++ +.|.+|+|.++|.|++++.|.++++..+
T Consensus 263 ~ig~~~~i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~------------------- 319 (358)
T COG1208 263 VIGPGAKIGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN------------------- 319 (358)
T ss_pred EECCCCEECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC-------------------
Confidence 344444444444443 5699999999999 9999999999999999999999999886
Q ss_pred eeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 458 IGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 458 ~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
+.||+ +. .+++ +.+|.++.+..+
T Consensus 320 ~~ig~-~~----~i~d-~~~g~~~~i~~g 342 (358)
T COG1208 320 CKIGA-SL----IIGD-VVIGINSEILPG 342 (358)
T ss_pred cEECC-ce----eecc-eEecCceEEcCc
Confidence 47777 22 1777 777777777653
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.1e-06 Score=70.63 Aligned_cols=29 Identities=28% Similarity=0.254 Sum_probs=12.8
Q ss_pred EECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 476 RIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 476 ~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.||+++.|.....+....++++++.|+++
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 45555555544444333334444444433
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=84.16 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=46.2
Q ss_pred cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCE
Q 010006 398 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 476 (520)
..+.|++++.||. +.|.+ +.++.||++|.|++.+.+.. ++++|.. +..+..++++|+++|.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh---~tGVVIGe~a~IGdnv~I~~---------~VtLGg~------g~~~~~r~piIGd~V~ 220 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDH---ATGVVIGETAVIGNNVSILH---------HVTLGGT------GKACGDRHPKIGDGVL 220 (294)
T ss_pred eeEEeCCcceecCCEEEeC---CCCeEECCCcEECCCCEEee---------cceeCCc------ccccCCCccEECCCeE
Confidence 3467889998886 44433 24788888888888776553 2222211 2233445677777888
Q ss_pred ECCCcEEecCCCc
Q 010006 477 IGDNVKIVNSDSV 489 (520)
Q Consensus 477 Ig~~~~i~~~~~v 489 (520)
||.|++|.+...+
T Consensus 221 IGagA~Ilggi~I 233 (294)
T PLN02694 221 IGAGATILGNVKI 233 (294)
T ss_pred ECCeeEECCCCEE
Confidence 8877777653333
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=74.86 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=5.4
Q ss_pred EECCCCEECCCcEE
Q 010006 470 IIDKNARIGDNVKI 483 (520)
Q Consensus 470 ii~~~~~Ig~~~~i 483 (520)
.||++|.||.+++|
T Consensus 120 ~IG~~~~Ig~~a~I 133 (169)
T cd03357 120 TIGDNVWIGGGVII 133 (169)
T ss_pred EeCCCEEECCCCEE
Confidence 33333333333333
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.3e-06 Score=70.81 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=22.3
Q ss_pred eEECCCcEEee-eEEe---eeEECCCCEECCCCEEcc
Q 010006 400 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~ 432 (520)
..||++|.|++ +.|. ...||++|.|+++|.|..
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 35666666665 5554 478888888888887753
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=79.30 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=6.5
Q ss_pred ECCCCEECCCCEEccc
Q 010006 418 VGLRSCISEGAIIEDT 433 (520)
Q Consensus 418 Ig~~~~Ig~~~~I~~~ 433 (520)
|+.+|.||++|.|..+
T Consensus 196 I~HdvvIGd~~~IgpG 211 (319)
T TIGR03535 196 ISAGVVVGDGSDIGGG 211 (319)
T ss_pred EccCCEECCCCEECCC
Confidence 3344444444444333
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.6e-06 Score=77.13 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.9
Q ss_pred ceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 399 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
...||++|.|++ +.|. ++.||++|.|++++.|.+.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 467888888877 6665 5788888888888888763
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5e-06 Score=74.95 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
++.||+++.|++. .+++|+.++.||++|.|++.+.+++.- ......+.+|+++ .||.++.+. ++.|++++.|
T Consensus 47 ~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~--~~~~~~~~IGd~~---~Ig~~~~I~~~v~IG~~~~I 119 (146)
T PRK10191 47 AATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRG--ADNMACPHIGNGV---ELGANVIILGDITIGNNVTV 119 (146)
T ss_pred CCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCC--cCCCCCCEECCCc---EEcCCCEEeCCCEECCCCEE
Confidence 3667787777751 269999999999999999988887521 0011223444444 444444443 3444444444
Q ss_pred CCCcEEe
Q 010006 478 GDNVKIV 484 (520)
Q Consensus 478 g~~~~i~ 484 (520)
|+++++.
T Consensus 120 gags~V~ 126 (146)
T PRK10191 120 GAGSVVL 126 (146)
T ss_pred CCCCEEC
Confidence 4444443
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=71.79 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=7.0
Q ss_pred EECCCCEECCCcEEe
Q 010006 470 IIDKNARIGDNVKIV 484 (520)
Q Consensus 470 ii~~~~~Ig~~~~i~ 484 (520)
.||+++.||.++.+.
T Consensus 94 ~IGd~~~Ig~~~~I~ 108 (146)
T PRK10191 94 HIGNGVELGANVIIL 108 (146)
T ss_pred EECCCcEEcCCCEEe
Confidence 444444444444444
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=74.44 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=20.5
Q ss_pred EECCCcEEee-eEEe-eeEECCCC--EECCCCEEcccEEE
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRS--CISEGAIIEDTLLM 436 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~--~Ig~~~~I~~~~i~ 436 (520)
.+|.++.|++ +.|. +++|++.+ +||++|.|...+.+
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred eecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEE
Confidence 4667777776 5555 45555554 56666666544433
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-05 Score=86.66 Aligned_cols=199 Identities=20% Similarity=0.221 Sum_probs=130.4
Q ss_pred eEEEEeCceecccc--HHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCCC--CCEEEeeeCCChhhhhhccccccc
Q 010006 207 EFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTI 282 (520)
Q Consensus 207 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~~~~~~ 282 (520)
.+||..||.+..++ +.+ -.+++++......+.+-.+..|+...|++ +++..+..||..+...++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 68999999866554 222 23466666666665556788999999887 6888999999987654332
Q ss_pred ccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC----C--CCCccccchHhhhh---------CCceEEEEEec-ce
Q 010006 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP----G--ANDFGSEVIPGATS---------IGMRVQAYLYD-GY 346 (520)
Q Consensus 283 ~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~----~--~~~~~~dil~~li~---------~~~~v~a~~~~-g~ 346 (520)
..+..+.++|+|+|+.+.+..+++.... . ..|+.+|++..|-. .+.++...++. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 2334688999999999888766654221 1 22444566554321 14567777776 57
Q ss_pred EEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee--eEEeeeEECCCCEE
Q 010006 347 WEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN--CKIHHSVVGLRSCI 424 (520)
Q Consensus 347 w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~--~~i~~s~Ig~~~~I 424 (520)
++-+||-.+|+.....+.... .-+..+.....-..|+. .+.|++|+.++.+++ +.|++|.||.+.+|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~-------~~~~~i~~~~~~~~~~~----~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV-------TDQRRIMHRKVKPHPAM----FVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh-------hhhhhhhccccCCCCce----EEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 999999999986544332221 00111111111111221 236889999999997 55889999999999
Q ss_pred CCCCEEcccEE
Q 010006 425 SEGAIIEDTLL 435 (520)
Q Consensus 425 g~~~~I~~~~i 435 (520)
|.+|+|.+.-.
T Consensus 364 g~~~Iisgv~~ 374 (974)
T PRK13412 364 ASRSIITGVPE 374 (974)
T ss_pred cCCcEEecccc
Confidence 99999987743
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.2e-05 Score=70.09 Aligned_cols=118 Identities=23% Similarity=0.336 Sum_probs=84.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccC--hhHHHHHHHHhhhccCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFN--SASLNRHLSRAYASNMG 163 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~--~~~i~~~l~~~~~~~~~ 163 (520)
|+++.+||-|-=.+|||. -|.|+|++|+ |||+++|+++..+- +++++|.|.-. .+.+..++.+ +
T Consensus 1 ~~~I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~-~----- 67 (241)
T COG1861 1 MSMILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS-H----- 67 (241)
T ss_pred CCcEEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH-c-----
Confidence 345666666666777886 4999999987 99999999999875 68999998743 3446666555 1
Q ss_pred CCcCCCeEEEeecccCCCCCCCccCcH-HHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcE
Q 010006 164 GYKNEGFVEVLAAQQSPENPNWFQGTA-DAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (520)
Q Consensus 164 ~~~~~~~v~vl~~~~~~~~~~~~~Gt~-~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~ 235 (520)
+ +.++ .|.. +.|......++....+.++=+.||. +.+.+ +...++.|.++++|.
T Consensus 68 -----G-~~vf------------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 -----G-FYVF------------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -----C-eeEe------------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 1 2232 4554 4455555556655567888899999 77777 677899999888764
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.2e-06 Score=71.90 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=40.5
Q ss_pred CCCcCCCceee-cccc-cceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcc----cEEECC
Q 010006 383 QPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIED----TLLMGA 438 (520)
Q Consensus 383 ~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~----~~i~~~ 438 (520)
+..+.|.+.+- .+.| .+++|++||+|.+ +.+- --+||+|+.|.+.+.|.+ +.+|+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~ 74 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDS 74 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCC
Confidence 35667777663 5566 6799999999998 5443 268999999999887744 555554
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.5e-05 Score=81.48 Aligned_cols=94 Identities=26% Similarity=0.402 Sum_probs=64.5
Q ss_pred eEEEEeCceec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCC---------CEEEeeeCCChhhhhhc
Q 010006 207 EFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFSEKPKGEQLKAM 276 (520)
Q Consensus 207 ~~Lvl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~~ 276 (520)
-++|..+|+++ ..+ ...+. + .+++++++..+.+.+-++..|+..+|+++ .+.+|..||......+-
T Consensus 55 Gv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 58999999543 333 11222 1 23678888888877778899999999988 89999999998765211
Q ss_pred ccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 277 KVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
......+....++|++.|+.+..+.++.
T Consensus 131 ----------~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 131 ----------GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred ----------CcccCCCcccccccceeccHHHHHHHHH
Confidence 1111233456689999999887776654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-05 Score=79.61 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=15.1
Q ss_pred eeCCCCEEcceEECCCCEECCCcEEec
Q 010006 459 GIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 459 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.||.++.|.+.+-...+.+|.-+++.+
T Consensus 304 ~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 304 KIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred EECCCCEECcccCCCcEEECCCeEEEc
Confidence 566666665555555555555555544
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00045 Score=72.96 Aligned_cols=211 Identities=19% Similarity=0.266 Sum_probs=120.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEec-cChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQ-FNSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~-~~~~~i~~~l~~~~~~~ 161 (520)
.++.+|+||||.||||+ ..-||.|+||..+..+++..++++.. .|. -..+|-++ ...++..+++.+.....
T Consensus 55 ~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~ 131 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLD 131 (420)
T ss_dssp TCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSS
T ss_pred CCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCC
Confidence 57899999999999998 57899999997666899988888764 332 23466666 45678899999822221
Q ss_pred CCC-CcCCCeEEEeecccC-C----C-----CCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceeccccHHHH
Q 010006 162 MGG-YKNEGFVEVLAAQQS-P----E-----NPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERF 224 (520)
Q Consensus 162 ~~~-~~~~~~v~vl~~~~~-~----~-----~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~l 224 (520)
... .|.+..+..+..... + . ...| +.|.++-.... ++.+...+.+.+.+.+.|.|...-=-.+
T Consensus 132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~ 211 (420)
T PF01704_consen 132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVF 211 (420)
T ss_dssp CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHH
T ss_pred cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHH
Confidence 110 011111111111110 0 0 0123 34665433322 2334445678999999999665322347
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (520)
+..+.++++++.+-+.+....+. .-|+++ .|..-+|+++.+-|...... .. ......+.++|--+
T Consensus 212 lG~~~~~~~~~~~evv~Kt~~de-k~Gvl~~~~G~~~vvEysqip~~~~~~-~~------------~~~~~~~FntnNi~ 277 (420)
T PF01704_consen 212 LGYMIEKNADFGMEVVPKTSPDE-KGGVLCRYDGKLQVVEYSQIPKEHMAE-FK------------DIKGFLLFNTNNIW 277 (420)
T ss_dssp HHHHHHTT-SEEEEEEE-CSTTT-SSEEEEEETTEEEEEEGGGS-HHGHHH-HT------------STTTSBEEEEEEEE
T ss_pred HHHHHhccchhheeeeecCCCCC-ceeEEEEeCCccEEEEeccCCHHHHHh-hh------------ccccceEEEeceee
Confidence 77778888998777776543222 344444 44334677777766653211 00 00112355778779
Q ss_pred EeHHHHHHHHhh
Q 010006 304 ISKDVMLNLLRD 315 (520)
Q Consensus 304 fs~~vl~~ll~~ 315 (520)
|+-+.++++++.
T Consensus 278 ~~l~~l~~~~~~ 289 (420)
T PF01704_consen 278 FSLDFLKRLLER 289 (420)
T ss_dssp EEHHHHHHHHHT
T ss_pred EEHHHHHHHHHh
Confidence 999999988764
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.3e-05 Score=69.66 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.6
Q ss_pred eeEECCCCEECCCCEEccc
Q 010006 415 HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~ 433 (520)
...||++|.|+++|.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788888888888888665
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=3e-05 Score=78.56 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=15.4
Q ss_pred eEECCCcEEeeeEEeeeEE--CCCCEECCCCEEcccEEE
Q 010006 400 SVIGEGCVIKNCKIHHSVV--GLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~I--g~~~~Ig~~~~I~~~~i~ 436 (520)
+-|++++.|+. +..| |.++.||++|+|++.+.+
T Consensus 206 idI~p~A~IG~----Gv~IdHg~GVVIG~~avIGdnv~I 240 (355)
T PLN02739 206 IDIHPAARIGK----GILLDHGTGVVIGETAVIGDRVSI 240 (355)
T ss_pred cccCCCccccC----ceEEecCCceEECCCCEECCCCEE
Confidence 34555555553 2233 235555555555544443
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=66.26 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=7.2
Q ss_pred eeEECCCCEECCC
Q 010006 415 HSVVGLRSCISEG 427 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~ 427 (520)
++.||++|.|...
T Consensus 27 ~~~Ig~~~~i~~~ 39 (109)
T cd04647 27 NVLIGPNVTIYDH 39 (109)
T ss_pred CCEECCCCEEECC
Confidence 4555555555544
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00059 Score=69.06 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=121.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceec---CCccchhHHHHHHhHhCC--------C-CeEEEEec-cChhHHHHHHHHh
Q 010006 91 LGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNSN--------I-SKIYVLTQ-FNSASLNRHLSRA 157 (520)
Q Consensus 91 ~aIILAaG~GtRl~PlT~~~pK~Llpv---~G~~plI~~~l~~l~~~g--------i-~~I~Iv~~-~~~~~i~~~l~~~ 157 (520)
.+|+||||.||||+ ..-||.++|| .|+ ++++..++++.... . =.++|.++ ...++..++|++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57999999999998 5789999999 354 99999999986521 1 23467776 4567788999873
Q ss_pred hhccCCC----CcCCCeEEEeecc--cC---CCC---CCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCce-ecc
Q 010006 158 YASNMGG----YKNEGFVEVLAAQ--QS---PEN---PNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYR 218 (520)
Q Consensus 158 ~~~~~~~----~~~~~~v~vl~~~--~~---~~~---~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~ 218 (520)
..+++.. .|.+..+..+... .- .++ -.| +.|.++-.... ++.+...+.+++.+..-|. |..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3333221 1111222222100 00 011 112 35665443322 2333444667888888888 444
Q ss_pred ccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe--CCCC--CE--EEeeeCCChhhhhhcccccccccCCchhhcc
Q 010006 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEG--RI--IEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (520)
Q Consensus 219 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g--~V--~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
.-.-.++-.+..++.++...+.+. .+...-|+++. ..+| .| +++.|-+..-..... +. +--......
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~--~~---g~~~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGK--DD---GDVDDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCC--CC---CCccccccc
Confidence 444456666677788877666553 33456776653 1233 34 777765543211100 00 000000012
Q ss_pred CCceeeeeEEEEeHHHHHHHHhh
Q 010006 293 MPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
..+..+++.++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23567899999999888877764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.3e-05 Score=69.31 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=4.6
Q ss_pred ECCCCEECCCCE
Q 010006 418 VGLRSCISEGAI 429 (520)
Q Consensus 418 Ig~~~~Ig~~~~ 429 (520)
||+++.||.++.
T Consensus 122 Ig~~V~IGagAk 133 (194)
T COG1045 122 IGNGVYIGAGAK 133 (194)
T ss_pred cCCCeEECCCCE
Confidence 333333333333
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.2e-05 Score=71.33 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=23.1
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.+..+|..|.++. +.+. +..||.++.|+.+|.|...
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 3467777787776 5432 3457777777777776654
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.4e-05 Score=71.05 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=26.0
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 438 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~ 438 (520)
+.||+|-.+..+ ...+||+-..||++|.|.+.+-+++
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 456677666652 2567788788888888877777775
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.2e-05 Score=72.73 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=48.5
Q ss_pred cccCCCccccCCCcCCCceee-------cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKML-------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETD 444 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~ 444 (520)
+++|++++.++++++|++.|. +.++.+++|-++|.|.+ +.+.||+||-.|.||.+++++..-+..+-
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~----- 364 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP----- 364 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC-----
Confidence 455555555555555554443 33445555556666655 55556666666666666655544333220
Q ss_pred ccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 445 ADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 445 ~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
....+.-++.|..+++++-|.+.|
T Consensus 365 -----------------~~~~~a~Tilga~v~v~dev~v~~ 388 (407)
T KOG1460|consen 365 -----------------NLPFAALTILGADVSVEDEVIVLN 388 (407)
T ss_pred -----------------CCCcceeEEecccceecceeEEee
Confidence 000112366677777777777765
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0029 Score=67.72 Aligned_cols=209 Identities=13% Similarity=0.189 Sum_probs=120.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecC--CccchhHHHHHHhHhC--------------CC-CeEEEEec-cChhH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQ-FNSAS 149 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~--G~~plI~~~l~~l~~~--------------gi-~~I~Iv~~-~~~~~ 149 (520)
.++.+|+||||.||||+ ...||.|++|+ .++++++...+++... ++ =..+|.++ ...+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 46889999999999998 57899999773 2348999999886431 11 13466676 45677
Q ss_pred HHHHHHHhhhccCCCCcCCCeEEEeeccc-------------CCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEE
Q 010006 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQ-------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLV 210 (520)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~v~vl~~~~-------------~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lv 210 (520)
..++|.+...+++.. .. |.++.... ++..-.| +.|.++-.... ++.+...+.+++.+
T Consensus 192 T~~ff~~~~~FGl~~---~~-V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKYFGLEA---DQ-VTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCCCCCCc---cc-eEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 899998743333211 11 22211100 0011112 35665543322 23333446788999
Q ss_pred EeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe-CCCC--CEEEeeeCCChhhhhhcccccccccCC
Q 010006 211 LAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEG--RIIEFSEKPKGEQLKAMKVDTTILGLD 286 (520)
Q Consensus 211 l~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~-d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~ 286 (520)
...|.+ ...---.++-.+...+.++..-+.+... ....-|.++. +.+| .|+++.|-+....... +
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~-~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~----------~ 336 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDQAMASAI----------N 336 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeecCC-CCCceeEEEEecCCCCEEEEEeccCCHHHHhcc----------C
Confidence 999994 4433334677777888887766554322 1234466654 2344 4777777654332110 0
Q ss_pred chhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 287 DERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+......-...+++.++|+.++|.++..
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0001112245678889999999987643
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00049 Score=64.16 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCccceecCC--ccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCcc
Q 010006 110 RAKPAVPLGA--NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 187 (520)
Q Consensus 110 ~pK~Llpv~G--~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~ 187 (520)
.+|+|+++.| + |||+|+++.+.. .+++|+|+++.+. .. .. .+ +.++.... . ..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~~-~~~~iivv~~~~~-~~----~~---------~~---~~~i~d~~--~----g~ 57 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVGQ-RCAPVFVMAAPGQ-PL----PE---------LP---APVLRDEL--R----GL 57 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHhh-cCCEEEEECCCCc-cc----cc---------CC---CCEeccCC--C----CC
Confidence 5899999997 7 999999998764 5899999997542 11 00 01 22332111 1 26
Q ss_pred CcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHh
Q 010006 188 GTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (520)
Q Consensus 188 Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (520)
|...++..++..+.....+.+++++||+ +++.+ +..+++.+..
T Consensus 58 gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 58 GPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 7777777666543222357999999999 66655 7777776543
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.4e-05 Score=74.66 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=42.4
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCccc
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 494 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~ 494 (520)
+|.||+|+.||.+|+|++++.+.+ +++-.+. .++.++.|..++++.+++||.+++|.+.+.+++++.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~~---~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~ 342 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQD----------STILGAD---YYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVI 342 (371)
T ss_pred ccEECCCceECCCcEecCceEEEe----------eEEEccc---eechhHHHHhhhccccccccCceEEecccEeccceE
Confidence 677777777777777777776653 2222222 466666777777777777777777766444444333
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0039 Score=65.47 Aligned_cols=208 Identities=18% Similarity=0.275 Sum_probs=118.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEeccChhHHHHHHHH-hhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFNSASLNRHLSR-AYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~~~~~~i~~~l~~-~~~~~ 161 (520)
.++.+|+||||+||||+ ..-||.+++|..++++++.+.+.+.. .++ -..+|-+..+.++-..++.. .|. +
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~-~ 179 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF-G 179 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc-C
Confidence 57899999999999999 46899999998334999999888754 343 23466677777555554443 331 1
Q ss_pred CCC----CcCCCeEE-EeecccC----CCC--CCC-ccCcHH---HHHH--HHHHhhhcCcceEEEEeCceecc-ccHHH
Q 010006 162 MGG----YKNEGFVE-VLAAQQS----PEN--PNW-FQGTAD---AVRQ--YLWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (520)
Q Consensus 162 ~~~----~~~~~~v~-vl~~~~~----~~~--~~~-~~Gt~~---al~~--~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (520)
+.. .|.+.... ++..... ..+ ..| +.|.++ +|.. .++.+...+.+.+.|.+.|.+.. .|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 100 11111111 2111110 011 134 345543 4443 22333345678899999999543 4543
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceEEEE-eCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceee-eeE
Q 010006 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS-MGI 301 (520)
Q Consensus 224 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~GI 301 (520)
++..+...+.+.++=++.... ....-|++. .|+.-+|+++.+-|......... .........+ .++
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~-a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-----------~~~~~~~n~Nni~l 326 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTK-ADEKVGILVTYDGKLRLLEYSEVPNEHREEFTS-----------DGKLKYFNTNNIWL 326 (472)
T ss_pred HHHHHHhcCcceeEEEeeccc-ccccceEEEEeCCceEEEEEecCChhHhhhhcc-----------ccceeeecccccee
Confidence 667777778887665554332 223455554 77778999999888753211000 0000112334 678
Q ss_pred EEEeHHHHHHH
Q 010006 302 YVISKDVMLNL 312 (520)
Q Consensus 302 yifs~~vl~~l 312 (520)
|+++.+.+.+.
T Consensus 327 ~~~~~~~l~~~ 337 (472)
T COG4284 327 HLFSVKFLKEA 337 (472)
T ss_pred ehhHHHHHHhh
Confidence 88888777644
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=67.55 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=45.3
Q ss_pred EECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecC--------CCcCCccc
Q 010006 423 CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS--------DSVQEAAR 494 (520)
Q Consensus 423 ~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~--------~~v~~~~~ 494 (520)
-|.+.+.|+++++++. +..++||+ -++||+|+.|.-++.++.. ..+++++.
T Consensus 150 dihpaa~ig~gilldh----------------atgvvige-----TAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vl 208 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDH----------------ATGVVIGE-----TAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVL 208 (269)
T ss_pred cccchhhcccceeecc----------------ccceeecc-----eeEeccceeeecceeeccccccccccCCcccCCeE
Confidence 4566677777788775 11235663 4555566666666666432 13334444
Q ss_pred ccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 495 ETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 495 ~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+|.|+.|-.+ |+||+|++|++|++|
T Consensus 209 iGaGvtILgn-V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 209 IGAGVTILGN-VTIGEGAVIAAGSVV 233 (269)
T ss_pred EccccEEeCC-eeECCCcEEeccceE
Confidence 4444444455 778888888888875
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=81.09 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=21.0
Q ss_pred ceEECCCcEEeeeEEeeeEECCC-CEECCCCEEcccEEEC
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLR-SCISEGAIIEDTLLMG 437 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~-~~Ig~~~~I~~~~i~~ 437 (520)
++.||++|.|+. ...+..+ +.||++|.|.+.+.+.
T Consensus 597 Ga~IG~~v~i~~----~~~~~~dlv~IGd~~~I~~~~~i~ 632 (695)
T TIGR02353 597 GVKIGRGVYIDG----TDLTERDLVTIGDDSTLNEGSVIQ 632 (695)
T ss_pred CCEECCCeEECC----eeccCCCCeEECCCCEECCCCEEE
Confidence 455566665554 2233333 5888888887776654
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00058 Score=76.99 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=51.3
Q ss_pred cceEECCCcEEeeeEE---eeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECC
Q 010006 398 TDSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 473 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i---~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 473 (520)
-.+.||+||.|+...+ ....||+||.|+++|.|.+..+-+. ... .. |+.||+||.|. +|+|.+
T Consensus 111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~l~---~g---------~i~IG~~~~IG~~s~I~~ 177 (695)
T TIGR02353 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-RLH---TG---------PVTLGRDAFIGTRSTLDI 177 (695)
T ss_pred cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC-cee---ec---------CcEECCCcEECCCCEEcC
Confidence 3467888888876222 1466888888888888765433211 000 01 24555555554 555555
Q ss_pred CCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 474 NARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 474 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|++||++++|..++.+..+..+.++......
T Consensus 178 g~~Igd~a~vgagS~V~~g~~v~~~~~~~G~ 208 (695)
T TIGR02353 178 DTSIGDGAQLGHGSALQGGQSIPDGERWHGS 208 (695)
T ss_pred CCEECCCCEECCCCEecCCcccCCCCEEEee
Confidence 5666666555555444443334444444433
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.025 Score=62.44 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=123.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceec--CCccchhHHHHHHhHhC-----------CC-CeEEEEecc-ChhHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNS-----------NI-SKIYVLTQF-NSASLNR 152 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv--~G~~plI~~~l~~l~~~-----------gi-~~I~Iv~~~-~~~~i~~ 152 (520)
.++.+|+||||.||||+ ..-||-++|+ ...+++++..++++... +. -.++|-+.+ ..+...+
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 57899999999999998 5689999998 22249999999997543 11 235666764 4677888
Q ss_pred HHHHhhhccCCC----CcCCCeEEEeeccc-----C---CCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCc
Q 010006 153 HLSRAYASNMGG----YKNEGFVEVLAAQQ-----S---PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGD 214 (520)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~~v~vl~~~~-----~---~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD 214 (520)
+|++...|++.. .|..+.+..+.... . +....| +.|.++-.... ++.+...+.+++.+...|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 998743333221 11111111111110 0 001112 34554433322 233444567889999999
Q ss_pred e-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe--CCCCC----EEEeeeCCChhhhhhcccccccccCCc
Q 010006 215 H-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR----IIEFSEKPKGEQLKAMKVDTTILGLDD 287 (520)
Q Consensus 215 ~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g~----V~~~~ekp~~~~~~~~~~~~~~~~~~~ 287 (520)
. |...-.-.++-.+..++.++.+-+.+.. +...-|+++. ..+|+ ++++.|.+..-.. ...+..-+.
T Consensus 284 N~L~~~Adp~flG~~~~~~~d~~~kvv~K~--~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g~l~--- 356 (615)
T PLN02830 284 NGLVFKAIPAALGVSATKGFDMNSLAVPRK--AKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDGDVN--- 356 (615)
T ss_pred chhhhcccHHHhHHHHhcCCceEEEEEECC--CCcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCcccc---
Confidence 9 4443346788888888888877776643 3345555554 12343 4466665443211 111111110
Q ss_pred hhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 288 ERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 288 ~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
.......+-.++...+++-+.+.+++++
T Consensus 357 ~~~~~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 DETGYSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cccccccCCCCceeeEeeHHHHHHHHHh
Confidence 0001222334788889998888777764
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00087 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=13.2
Q ss_pred eEECCCCEECC-CCEEcc-cEEEC
Q 010006 416 SVVGLRSCISE-GAIIED-TLLMG 437 (520)
Q Consensus 416 s~Ig~~~~Ig~-~~~I~~-~~i~~ 437 (520)
..||+++.|+. .|.+.. .+.++
T Consensus 2 ~~iG~~s~i~~~~~~~~~~~i~IG 25 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGGDKLSIG 25 (145)
T ss_pred EEEeCceeeCCCCceEeCCCeEEC
Confidence 35777788877 455553 34444
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.13 Score=53.10 Aligned_cols=352 Identities=17% Similarity=0.173 Sum_probs=168.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCCCeEEEE-eccCh-hHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNISKIYVL-TQFNS-ASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi~~I~Iv-~~~~~-~~i~~~l~~~~~~~ 161 (520)
.++..+=|-||.||-|+ -.-||.+++|......+|-++.+... .+++--.|+ ..++- ++...++.+.+...
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 46778889999999998 56899999997666877766655543 344433343 34554 55666676644432
Q ss_pred CC------CCcCCCeEE-Eeeccc---CCCCCCCc-cCcHH---HHHHH--HHHhhhcCcceEEEEeCceecc-ccHHHH
Q 010006 162 MG------GYKNEGFVE-VLAAQQ---SPENPNWF-QGTAD---AVRQY--LWLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (520)
Q Consensus 162 ~~------~~~~~~~v~-vl~~~~---~~~~~~~~-~Gt~~---al~~~--~~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (520)
+. ++|..-..+ .++... ......|+ .|.++ +++.. ++.+-.++.|.++|.+.|.+-. .||. +
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-I 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-H
Confidence 11 111111111 111111 11224564 35443 33321 1222234678999999999764 5654 3
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEE
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI 304 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyif 304 (520)
++.....+.+..+-+++....+...=-++..+..-|..++..-|.....+-..+ ..-.+.++.--++
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------------kkFkifNTNNlWi 324 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------------KKFKIFNTNNLWI 324 (498)
T ss_pred HHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc-------------eeEEEeccCCeEE
Confidence 444445566655555553322221111222322234555555555432110000 0011445555567
Q ss_pred eHHHHHHHHhhhCCCC------C--CccccchHh------hhhC-CceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 305 SKDVMLNLLRDKFPGA------N--DFGSEVIPG------ATSI-GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 305 s~~vl~~ll~~~~~~~------~--~~~~dil~~------li~~-~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
+-..+++++++..-+. . +...++|+. +++. ...+.+..-...+..+.|-.|++-....+....+.
T Consensus 325 nLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~G 404 (498)
T KOG2638|consen 325 NLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNG 404 (498)
T ss_pred ehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCC
Confidence 7777777877532110 0 111222221 1221 11122222234677777777766554443322211
Q ss_pred CCccccCCCccccCCCcCCCceee-cc---cccc--eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccc
Q 010006 370 DFSFYDRSAPIYTQPRYLPPSKML-DA---DVTD--SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET 443 (520)
Q Consensus 370 ~~~~~~~~~~i~~~~~~~~~~~i~-~~---~i~~--~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~ 443 (520)
+..+++.-...++..+. +. ++.+ .-+-.=-.| -.+.+-.|.-++..|.++.+++.+++-++
T Consensus 405 -------sl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia~---- 471 (498)
T KOG2638|consen 405 -------SLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIAN---- 471 (498)
T ss_pred -------eEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEec----
Confidence 11111111111111111 11 1111 000000011 11224444555888888888888775442
Q ss_pred cccccccccCCCcceeeCCCCEEcceEECCCCEECC
Q 010006 444 DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479 (520)
Q Consensus 444 ~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 479 (520)
..-++.|-+|+++++++|-.|++|-+
T Consensus 472 ----------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 472 ----------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ----------CCCeeecCCCCeeecceEeccccccc
Confidence 12236789999999998888887754
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0027 Score=59.63 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=9.0
Q ss_pred CeEEccCeEEEcCCCEeCCCcc
Q 010006 498 GYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 498 ~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.|.+| |+||+|++|++|++
T Consensus 136 ~a~IlpG-V~IG~gavigagsV 156 (190)
T COG0110 136 GAVILPG-VTIGEGAVIGAGSV 156 (190)
T ss_pred ccEECCC-EEECCCcEEeeCCE
Confidence 3333344 44444444444443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=61.63 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=42.3
Q ss_pred eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCc
Q 010006 411 CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSV 489 (520)
Q Consensus 411 ~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v 489 (520)
+.++..++|+...+|+++.|...++-.+ +.|+.+|.+. |.++++++-||+++.|.+.-.+
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v 89 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTV 89 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEeccceeeeeEEE
Confidence 4444566677777777777766666533 4666666665 6666666666666666553333
Q ss_pred CCcccccCCeEEccC
Q 010006 490 QEAARETDGYFIKSG 504 (520)
Q Consensus 490 ~~~~~~~~~~~I~~~ 504 (520)
...-.+|..+.|..|
T Consensus 90 ~gdLdig~dV~Iegg 104 (277)
T COG4801 90 IGDLDIGADVIIEGG 104 (277)
T ss_pred ecccccccceEEecC
Confidence 333334444444433
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=59.71 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=45.4
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
.++++...+++ +.|.+.+++.+|+|+.+|.+...++..+|- -||++++|. +-++...--|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~da------------------yiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDA------------------YIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCce------------------EEeccceeeeeEEEeccccc
Confidence 34555555555 555566777788888888888777777653 367777776 5566666777
Q ss_pred CCCcEEec
Q 010006 478 GDNVKIVN 485 (520)
Q Consensus 478 g~~~~i~~ 485 (520)
|+++.|.+
T Consensus 96 g~dV~Ieg 103 (277)
T COG4801 96 GADVIIEG 103 (277)
T ss_pred ccceEEec
Confidence 77777754
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00068 Score=45.49 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
+++|+++|+|+. +.|. ++.||++|.|+++|.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 356777777776 5544 56666666666666654
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=57.93 Aligned_cols=100 Identities=9% Similarity=0.109 Sum_probs=60.5
Q ss_pred ceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCccee-eCCCCEEcceEECCCCE
Q 010006 399 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG-IGKNSHIKRAIIDKNAR 476 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-Ig~~~~i~~~ii~~~~~ 476 (520)
|.++-..++|.+ +.|++- -.+++||..|.|+...++.-.+ . ..++...-...||+.+.
T Consensus 33 NI~lnGKtIv~~g~iIRGD--LAnVr~GryCV~ksrsvIRPp~------------------K~FSKg~affp~hiGdhVF 92 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGD--LANVRIGRYCVLKSRSVIRPPM------------------KIFSKGPAFFPVHIGDHVF 92 (184)
T ss_pred eEEEcCcEEEeeCcEEecc--cccceEcceEEeccccccCCch------------------HHhcCCceeeeeeecceEE
Confidence 344444444444 333321 1356666666665555444321 1 12333344567788888
Q ss_pred ECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 477 IGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 477 Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|++.|++ |...++.-+++|.+++||.+ |++-+=+.|-+++|+
T Consensus 93 ieE~cVV-nAAqIgsyVh~GknaviGrr-CVlkdCc~ild~tVl 134 (184)
T KOG3121|consen 93 IEEECVV-NAAQIGSYVHLGKNAVIGRR-CVLKDCCRILDDTVL 134 (184)
T ss_pred EecceEe-ehhhheeeeEeccceeEcCc-eEhhhheeccCCccc
Confidence 8888887 45666667777778888888 888888888888764
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0013 Score=58.07 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=18.9
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 430 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I 430 (520)
+.|.+++++-. +.|+ +..|+++|.|.+.+++
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~ 41 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF 41 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEE
Confidence 56888888875 5555 4555555555555443
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0016 Score=43.59 Aligned_cols=13 Identities=46% Similarity=0.570 Sum_probs=4.9
Q ss_pred ECCCCEECCCcEE
Q 010006 471 IDKNARIGDNVKI 483 (520)
Q Consensus 471 i~~~~~Ig~~~~i 483 (520)
|++++.|++++.|
T Consensus 4 Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 4 IGDNVIIGPNAVI 16 (36)
T ss_dssp EETTEEEETTEEE
T ss_pred EcCCCEECCCcEe
Confidence 3333333333333
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0047 Score=41.04 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=14.1
Q ss_pred eEECCCcEEee-eEEeeeEECCCCEECCCCEE
Q 010006 400 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAII 430 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I 430 (520)
..||++|+|+. |.| ...||++|.|+.++.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 46777777776 544 3445555555555444
|
... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0087 Score=39.76 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=3.0
Q ss_pred CCCCEECCCcE
Q 010006 472 DKNARIGDNVK 482 (520)
Q Consensus 472 ~~~~~Ig~~~~ 482 (520)
|+||.||.++.
T Consensus 5 G~~~~ig~~~~ 15 (34)
T PF14602_consen 5 GDNCFIGANST 15 (34)
T ss_dssp -TTEEE-TT-E
T ss_pred CCCEEECcccc
Confidence 33333333333
|
... |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.09 Score=49.51 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=59.1
Q ss_pred cchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHh
Q 010006 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (520)
Q Consensus 121 ~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l 200 (520)
+|||+|+++.+..+++.+++|+++. +++.+++.. + + +.++.. +. .|...+++.++..+
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~--------~---v~~i~~------~~--~G~~~si~~al~~~ 87 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L--------G---APVLRD------PG--PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c--------C---CEEEec------CC--CCHHHHHHHHHHHh
Confidence 4999999999999888888888863 344444332 1 1 233321 11 38899999998776
Q ss_pred hhcCcceEEEEeCce-ecc-ccHHHHHHHHH
Q 010006 201 EEHNVLEFLVLAGDH-LYR-MDYERFIQAHR 229 (520)
Q Consensus 201 ~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~ 229 (520)
.. ..+.++++.||+ ++. ..+.++++.+.
T Consensus 88 ~~-~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE-PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc-cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 53 235899999999 555 45888888653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.42 Score=41.23 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=66.7
Q ss_pred ceecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
++|..++.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ......+... . ..|.+.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~----~~g~~~ 67 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRVINE----E----NQGLAA 67 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEEEec----C----CCChHH
Confidence 4566666689999999999987 7889999887777777766663321 0111111111 1 267888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
++..++.... .+.++++.+|..+..+ +..++..+.
T Consensus 68 ~~~~~~~~~~---~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 68 ARNAGLKAAR---GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHhc---CCEEEEECCCCccCccHHHHHHHHHh
Confidence 8888887664 4789999999988777 555534443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.16 Score=54.01 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=53.4
Q ss_pred CceEEEEEec-ceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eE
Q 010006 335 GMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CK 412 (520)
Q Consensus 335 ~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~ 412 (520)
+.++.+..+. +.++-+||-.+|++-...- +.+. +. ..++ ..+.....+.+.. +.
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-----~~l~-------~~-------~~~~-----~~~~~~~~~~~~~~~~ 281 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSD-----SELG-------IM-------RRKF-----SHSPATTPSDSEASSC 281 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHhhccC-----cccc-------cc-------eeee-----eccccccccccCCCee
Confidence 5667776665 6788888888765543322 1110 00 0000 1111112223333 44
Q ss_pred EeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 413 IHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 413 i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
|.+|+|..++.||+++.|++|.+-++ +.||++|.|.++-+..
T Consensus 282 VinSil~~~~~vg~~svIe~s~l~~~-------------------~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 282 VINSILEGGVSVGPGSVIEHSHLGGP-------------------WSIGSNCIISGVDINS 323 (414)
T ss_pred EEEeEecCCceECCCCEEEeeecCCC-------------------CEECCCCEEECCcccc
Confidence 55778888888888888887777553 5677777777664443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.4 Score=39.58 Aligned_cols=105 Identities=23% Similarity=0.195 Sum_probs=62.8
Q ss_pred eEEEEEe---CCCCCCCCcccc-CCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 90 VLGIILG---GGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 90 ~~aIILA---aG~GtRl~PlT~-~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++||+- ++.-|||.|.-. +.-+-+ . +-|+-.++..+... +.+|.|++.. +++..+-.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~---~--laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~---------- 62 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENF---A--LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPAT---------- 62 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHH---H--HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhcc----------
Confidence 4566664 467889987522 222222 1 25888888888875 7899999842 22221111
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHH
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAH 228 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h 228 (520)
. .+++.. + +.-.++.+++..+.. ...++|+++|+ +. ..++.++++..
T Consensus 63 ---~-~~vl~d------~----dLN~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 63 ---K-LEVLAD------P----DLNTAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred ---c-ceeeec------c----chHHHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhc
Confidence 1 134322 1 123577777766653 25699999999 44 45688888764
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.4 Score=36.28 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred ceecCCccchhHHHHHHhHhC--CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 114 AVPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 114 Llpv~G~~plI~~~l~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
.+|..+....|..+|+.+.+. ...+|+|+-....+...+.+.+.... ...+.++.... + .|.+.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~-------~~~i~~i~~~~---n----~g~~~ 68 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAES-------DPNIRYIRNPE---N----LGFSA 68 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCC-------STTEEEEEHCC---C----SHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccc-------ccccccccccc---c----ccccc
Confidence 355554446788888888775 45677777665545555555553211 11244554322 1 57788
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEe
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALP 241 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~ 241 (520)
++..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 69 ~~n~~~~~a~---~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 69 ARNRGIKHAK---GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccc---eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 8888887765 3699999999988777 888999888877765544433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=88.36 E-value=8 Score=36.37 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=60.2
Q ss_pred eecCCccchhHHHHHHhHhCC---CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~ 191 (520)
+|..+....|..+++.+.+.- --+|+||-....+...+.+.+... ....+.++... .+ .|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~-------~~~~i~~~~~~---~n----~G~~~ 68 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK-------EYPRVRLIVRP---GK----RGLGS 68 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH-------hCCceEEEecC---CC----CChHH
Confidence 454433346777777776532 356777754333333333332100 01113343321 11 67888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEE
Q 010006 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (520)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl 237 (520)
++..++.... .+.++++.+|.....+ +..+++.....+.+++.
T Consensus 69 a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 69 AYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred HHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 8888876654 3788899999977765 88888875555566543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.8 Score=40.66 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=36.4
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 238 (520)
.|-+.++..++.... .+.++++.+|...+.+ +..+++...+.+.+++..
T Consensus 79 ~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 677788888776544 4789999999987765 888888776666665443
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=86.66 E-value=2.1 Score=40.26 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=37.0
Q ss_pred cCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEE
Q 010006 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (520)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 238 (520)
.|.+.++..++.... .+.++++.+|..+..+ +..+++...+.+.++++.
T Consensus 68 ~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 688889998887665 4789999999977765 888888755556665444
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=86.31 E-value=9.6 Score=36.17 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=63.2
Q ss_pred ceecCCcc-chhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 114 AVPLGANY-RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 114 Llpv~G~~-plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
++|..+.. ..|..+|+.+.+....+|+||.....+...+.+...+. ...+.++.. .+ .|.+.+
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--------~~~~~v~~~----~~----~g~~~a 68 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--------YGGIFVITV----PH----PGKRRA 68 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--------CCcEEEEec----CC----CChHHH
Confidence 34555454 68888899888765678888877666665555533221 111333322 11 577788
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHH
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (520)
+..++...+ .+.++++.+|..+..+ +.++++.+.
T Consensus 69 ~n~g~~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 69 LAEGIRHVT---TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHhC---CCEEEEECCCceeChhHHHHHHHhcc
Confidence 877776543 5889999999988877 777877765
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=84.00 E-value=17 Score=34.53 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=62.5
Q ss_pred eecCCccchhHHHHHHhHhCCC----CeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|..++.+.|..+++.+.+... -+|+|+-+...+...+.+..... ....+.++... + .|-+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-------~~~~v~~i~~~----~----~~~~ 70 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-------KDPRIRLIDNP----K----RIQS 70 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-------cCCeEEEEeCC----C----CCch
Confidence 4554444677888888876543 37777766555555555544211 01124444211 1 3556
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEE
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~t 236 (520)
.++..++...+ .+.++++.+|.....+ +.++++.+.+.+.++.
T Consensus 71 ~a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 71 AGLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred HHHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 67777766553 4789999999977766 8888877665555543
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=83.89 E-value=19 Score=31.54 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=63.0
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-++..+|..+++.+.+.. ..+++|+.....+...+.+.+.+. .+.++... .+ .|.+.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~---~~----~g~~~a 65 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNG---EN----LGFGAG 65 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecC---CC----cChHHH
Confidence 555555578899999997752 457777776555555555555221 13333211 11 678888
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
+..++.... .+.++++..|..+..+ +..+++.+.+.
T Consensus 66 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 66 NNQGIREAK---GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred hhHHHhhCC---CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 888887664 5788899999977766 77777765544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=82.21 E-value=19 Score=32.52 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=62.6
Q ss_pred eecCCccchhHHHHHHhHhC----CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcH
Q 010006 115 VPLGANYRLIDIPVSNCLNS----NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~ 190 (520)
+|.......|..+|+.+.+. ...+|+|+-+...+...+.+.... .. ...+.++... .+ .|.+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~-~~------~~~~~~~~~~---~n----~G~~ 68 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA-AR------VPRVRVIRLS---RN----FGKG 68 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH-Hh------CCCeEEEEcc---CC----CCcc
Confidence 34433324566777777664 357777776554444444443311 00 0112233221 12 6778
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEE
Q 010006 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (520)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 239 (520)
.++..++.... .+.++++.+|.....+ +..+++...+.+.++.+..
T Consensus 69 ~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 69 AAVRAGFKAAR---GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 88888876654 3789999999977766 8888887566666654443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=80.21 E-value=25 Score=30.57 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=58.9
Q ss_pred eecCCccchhHHHHHHhHhCC--CCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHH
Q 010006 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~a 192 (520)
+|.-+....|..+|+.+.+.. ..+++|+-....+...+.+.+.... .. ..+.++... .+ .|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~-~~~~~~~~~---~~----~g~~~~ 69 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YI-RRVLVVRDK---EN----GGKAGA 69 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----cc-ceEEEEEec---cc----CCchHH
Confidence 455544468888888888764 4577777655444444444431110 00 112222111 11 677888
Q ss_pred HHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
+..++.... .+.++++.+|.+...+ +..++..+.+.
T Consensus 70 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 70 LNAGLRHAK---GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHhcC---CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888876653 5789999999977766 66664555443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 520 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 0.0 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 6e-50 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 3e-06 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 1e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 4e-05 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 6e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 7e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 8e-05 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 8e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 8e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 8e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 9e-05 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 9e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 1e-04 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 1e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 736 bits (1902), Expect = 0.0
Identities = 427/450 (94%), Positives = 445/450 (98%)
Query: 71 AVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN 130
AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN
Sbjct: 2 AVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSN 61
Query: 131 CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190
CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTA
Sbjct: 62 CLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTA 121
Query: 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAF 250
DAVRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAF
Sbjct: 122 DAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAF 181
Query: 251 GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310
GLMKIDEEGRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASMGIYVISKDVML
Sbjct: 182 GLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVML 241
Query: 311 NLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPD 370
NLLRDKFPGANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP+PD
Sbjct: 242 NLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPD 301
Query: 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAII 430
FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAII
Sbjct: 302 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAII 361
Query: 431 EDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 490
ED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQ
Sbjct: 362 EDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQ 421
Query: 491 EAARETDGYFIKSGIVTIIKDALIPSGTII 520
EAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct: 422 EAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 550 bits (1420), Expect = 0.0
Identities = 131/448 (29%), Positives = 215/448 (47%), Gaps = 61/448 (13%)
Query: 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 146
+R + +L GG G+RL LT +RAKPAV G R+ID +SN LNS I +I V TQ+
Sbjct: 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 147 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL 206
+ SL RHL R + + + ++L A Q W++GTADAV Q + + E +
Sbjct: 70 AHSLIRHLQRGW--DFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPE 127
Query: 207 EFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSE 266
++LAGDH+Y+MDYE +Q H ++ AD+T+ L + AT FG+M ++E+ II+F E
Sbjct: 128 YMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIE 187
Query: 267 KPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323
KP E +ASMGIYV ++ +R + DF
Sbjct: 188 KPADP--------------PGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDF 233
Query: 324 GSEVIPGATSIGMRVQAYL-----------YDGYWEDIGTIEAFYNANLGITKKPIPDFS 372
G ++IP G + A+ ++ YW D+GTI+A++ AN+ +T +PD
Sbjct: 234 GKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT-DVVPDLD 291
Query: 373 FYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISE 426
YD+S PI+T PP+K + D SV+ C+I ++ S++ +
Sbjct: 292 IYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANS 351
Query: 427 GAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486
+ +E+ +++ + + IG+++ + +ID I + + +
Sbjct: 352 YSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEGLIV-GE 391
Query: 487 DSVQEAARETDGYFIKSGIVTIIKDALI 514
D +A R +SGI I + +
Sbjct: 392 DPELDAKR---FRRTESGICLITQSMID 416
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 5e-21
Identities = 81/468 (17%), Positives = 139/468 (29%), Gaps = 120/468 (25%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IL G+G RL P+T R K VP+ + LI+ + I I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPI-LSKPLIEYQIEYLRKCGIRDITVIVS------- 54
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
++ Y V Q+ +GT A+ F + E L++
Sbjct: 55 -SKNKEYFEKKLK--EISIVT----QKDD-----IKGTGAAILSA--KFND----EALII 96
Query: 212 AGDHLY--RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPK 269
GD + + I I + +G++ +D + + + EKP+
Sbjct: 97 YGDLFFSNEKEICNIITLKENA---IIGVKVS----NPKDYGVLVLDNQNNLSKIIEKPE 149
Query: 270 G--EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA-NDFGSE 326
L + GIY ++ D+ L +
Sbjct: 150 IPPSNL-----------------------INAGIYKLNSDI-FTYLDKISISERGELELT 185
Query: 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRY 386
+ RV+ Y+GYW DIG + N K + + F +
Sbjct: 186 DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN----KWALDNLVFSQNLGNVE----- 236
Query: 387 LPPSKMLDADVT---DSVIGEGCVIKNCKI--HHSVVGLRSCISEGAIIEDTLLMGADYY 441
+ + V D+ I G I+ S +G S + I+ + +GA
Sbjct: 237 --DNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGA--- 291
Query: 442 ETDADRRFLAAKGSVPIGIGKNSHIKR------AIIDKNARIGDNVKIVN-------SDS 488
+ K SV I + S I ++I ++ G I N
Sbjct: 292 -------SVEVKESV---IMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341
Query: 489 VQEAARETDGY-----------FIKSGI-----VTIIKDALIPSGTII 520
+ R + G + V I A I G ++
Sbjct: 342 NVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVV 389
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-19
Identities = 37/281 (13%), Positives = 75/281 (26%), Gaps = 86/281 (30%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS----NCLNSNISKIYVLTQFNSA 148
+IL G GTRL + K P V +G + L+ ++S+ ++
Sbjct: 22 VILAAGLGTRLGGVPK----PLVRVG------GCEIILRTMKLLSPHVSEFIIVA----- 66
Query: 149 SLNRHLSRAYASNMGGYKNE--------GFVEV-LAAQQSPENPNWFQGTADAVRQYLWL 199
+ + PE G ++
Sbjct: 67 ---------------SRYADDIDAFLKDKGFNYKIVRHDRPEK-----GNGYSLLVAKNH 106
Query: 200 FEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG 259
E+ F++ GDH+Y FI+ + I + +++++ G
Sbjct: 107 VED----RFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDIGE--ATKIRVED-G 156
Query: 260 RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319
R+ + + + G +V+ + +
Sbjct: 157 RVAKIGKDLREFDC-----------------------VDTGFFVLDDSIF-----EHAEK 188
Query: 320 ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
D + + Y+ W D+ T E AN
Sbjct: 189 LRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-17
Identities = 34/277 (12%), Positives = 81/277 (29%), Gaps = 67/277 (24%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
IIL G GTRL PLT+ K V + LI+ + I+ I ++
Sbjct: 29 IILAAGLGTRLRPLTENTPKALVQVN-QKPLIEYQIEFLKEKGINDIIIIVG-------- 79
Query: 153 HLSRAYASNMGGYKNEGF-VEVLAAQQSPENPNWFQ-GTADAVRQYLWLFEEHNVLEFLV 210
Y Y E + V ++ N + + L+L +E +++
Sbjct: 80 -----YLKEQFDYLKEKYGVRLV------FNDKYADYNNFYS----LYLVKEELANSYVI 124
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
A ++L++ + + T ++ ++ T + ++ ++ + K
Sbjct: 125 DADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYKVQDIIVDSK- 174
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV------MLNLLRDKFPGANDFG 324
G+ ++ + +
Sbjct: 175 -----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYW 211
Query: 325 SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNAN 360
++ + V +G +I +++ +
Sbjct: 212 DNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 53/392 (13%), Positives = 102/392 (26%), Gaps = 126/392 (32%)
Query: 192 AVRQYLWLFEEHN---VLEFL--VLAGDH--LY----------RMDYERFIQAHRETDAD 234
+ W V +F+ VL ++ L M +I+ D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 235 ITVAALPMDEKRATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAM----KVDTTILGL 285
V A + R + L+++ ++ + + K T + L
Sbjct: 123 NQVFA-KYNVSRLQPYLKLRQALLELRPAKNVL----------IDGVLGSGK---TWVAL 168
Query: 286 ----DDERAKEMP---YIASMGIYVISKDVMLNL------LRDKFPGANDFGSEVIPGAT 332
+ +M + ++ + V+ L + + +D S +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 333 SIGMRVQAYL----Y-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIY 381
SI ++ L Y + AF + S
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAF-------------NLS--------- 265
Query: 382 TQPRYLPPSKML----DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMG 437
K+L VTD + + + H + L ++ +
Sbjct: 266 --------CKILLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTP--------DEVKSLL 307
Query: 438 ADYYETDADR-RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA---- 492
Y + + P + S I +I D A DN K VN D +
Sbjct: 308 LKYLDCRPQDLPREVLTTN-PRRL---SIIAESIRDGLATW-DNWKHVNCDKLTTIIESS 362
Query: 493 -----ARETDGYFIKSGIVTIIKDALIPSGTI 519
E F + + A IP+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSV--FPPSAHIPTILL 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 76/541 (14%), Positives = 139/541 (25%), Gaps = 191/541 (35%)
Query: 66 VVSPQAVSDSKNSQTCLDPEASRSVLGIIL-G-GGAG-TRLYPLTKKRAKPAVPLGANYR 122
V Q + + L P +++ G G+G T + A+ + +Y+
Sbjct: 131 VSRLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWV----------ALDVCLSYK 175
Query: 123 LID--------IPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVL 174
+ + + NC + VL L + + S N
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET----VLEMLQK--LLYQIDPNWTSRSDHSSNI------ 223
Query: 175 AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA------- 227
+ Q +R+ L N L LVL ++ + A
Sbjct: 224 -----KLRIHSIQ---AELRRLLKSKPYENCL--LVL--LNVQ---NAKAWNAFNLSCKI 268
Query: 228 ---HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILG 284
R +T I + + + + + L +D
Sbjct: 269 LLTTR--FKQVTDFLSAATTTH--------ISLDHHSMTLTP-DEVKSLLLKYLDCRPQD 317
Query: 285 LDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD 344
L E P S+ I++ +RD D + +
Sbjct: 318 LPREVLTTNPRRLSI----IAE-----SIRD-GLATWDN-----------------WKHV 350
Query: 345 GYWEDIGTIEAFYNA-NLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML---------- 393
+ IE+ N +K S + SA I P+ +L
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--------PTILLSLIWFDVIKS 402
Query: 394 -DADVTDSVIGEGCVIKNCK-----IHHSVVGLRSCISEGA-----IIE----------D 432
V + + V K K I + L+ + I++ D
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 433 TL----------------LMGADYYETDA-------DRRFLAAK----GSVPIGIGKNSH 465
L L ++ E D RFL K + G +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 466 I-------KRAIIDKNAR-------IGDNV-----KIVNS---DSVQEA-ARETDGYFIK 502
K I D + + I D + ++ S D ++ A E + F +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 503 S 503
+
Sbjct: 583 A 583
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-10
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+I+ GG GTR+ + KP + L LID VS L S ++ I++ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLC-GRCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+++ AY + + ++ S +G + + + + F E FLV+
Sbjct: 58 EYINSAY---------KDYKNIVVIDTSG------KGYIEDLNECIGYFSE----PFLVV 98
Query: 212 AGD--HLYRMDYERFIQAHRETDADITV 237
+ D +L + A
Sbjct: 99 SSDLINLKSKIINSIVDYFYCIKAKTPD 126
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 83/517 (16%), Positives = 143/517 (27%), Gaps = 177/517 (34%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL 150
++L G GTR+ + P V L A ++ + ++ V+ + +
Sbjct: 16 LVLAAGPGTRM-----RSDTPKVLHTL-AGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69
Query: 151 NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLV 210
+ L + GT AV L + +V
Sbjct: 70 -----APLVGELADTLGRTIDVALQDRP--------LGTGHAVLCGLSALPDDYAGNVVV 116
Query: 211 LAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---RIIEFS 265
+GD L D I HR A +TV +D+ +G + ++ I+E
Sbjct: 117 TSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDD--PFGYGRILRTQDHEVMAIVE-- 172
Query: 266 EKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324
+ D T +R +E+ + G+Y + + L + N
Sbjct: 173 QT-----------DAT----PSQREIREV----NAGVYAFDIAALRSAL-SRLSSNNAQQ 212
Query: 325 ----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL-------GITK 365
++VI S G V A D G + + N + G+T
Sbjct: 213 ELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVT- 271
Query: 366 KPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT---------------------DSVIGE 404
+ D P + +D DVT V+G
Sbjct: 272 --VVD-----------------PATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGP 312
Query: 405 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG----- 459
+ + + +R+ + I D GA +G
Sbjct: 313 DTTLTDVAVGDGASVVRTHG-SSSSIGD----GAA------------------VGPFTYL 349
Query: 460 -----IGKNSHI------KRAIIDKN-----------ARIGDNVKI------VNSDSVQE 491
+G + + K + I A IG+ I VN D +
Sbjct: 350 RPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSK 409
Query: 492 AARET---DGYFIKSGI-----VTIIKDALIPSGTII 520
R T S VTI A +GT++
Sbjct: 410 --RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV 444
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 5e-06
Identities = 24/265 (9%), Positives = 67/265 (25%), Gaps = 34/265 (12%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+I G +R + + K + L + V++ S ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEA-HGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVL--EFLV 210
+ E +G A+ V L + V +
Sbjct: 62 FVREKATQLGIKQFYI-----------AELHTETRGQAETVTLGLEELAKQGVDYQGSIT 110
Query: 211 LAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270
+ +R ++ + +F + ++I+ +EK
Sbjct: 111 VFNIDTFRPNFVFPDISQHSDGYLEV----FQGGGDNWSFAKPEHAGSTKVIQTAEKNP- 165
Query: 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPG 330
+ D + + + Y+ + + ++ + + +
Sbjct: 166 --------------ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNE 211
Query: 331 ATSIGMRVQAYLYDGY-WEDIGTIE 354
G+ + +L + G +
Sbjct: 212 LIQKGLNIHYHLIARHEVIFCGVPD 236
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 399 DSVIGEGCVIK-NCKIHHSV-VGLRSCISEGAIIEDTLLMGAD--YYETDADRRFLAAK- 453
S +GE I I V +G R I GA+I G+ Y T A +
Sbjct: 172 YSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVI------GSCGFGYVTSAFGQHK--HL 223
Query: 454 ---GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 485
G V I IG N+ I R ++ + + KI N
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFK-HSVVREGSKIDN 261
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 79/448 (17%), Positives = 136/448 (30%), Gaps = 145/448 (32%)
Query: 88 RSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLTQF 145
S IIL G GTR+ K P V + A +++ + K +
Sbjct: 10 HSNFAIILAAGKGTRM-----KSDLPKVLHKV-AGISMLEHVFRSVGAIQPEKTVTVVGH 63
Query: 146 NSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNV 205
+ + L+ + QS + GT AV + E +
Sbjct: 64 KAELVEEVLAG---------------QTEFVTQSEQL-----GTGHAVMMTEPILEGLSG 103
Query: 206 LEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---R 260
LV+AGD L + + I H T+ D +G + ++ R
Sbjct: 104 -HTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRNDNAEVLR 160
Query: 261 IIEFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFPG 319
I+E +K D T D E+ KE+ + G YV + + L
Sbjct: 161 IVE--QK-----------DAT----DFEKQIKEI----NTGTYVFDNERLFEAL-KNINT 198
Query: 320 ANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL------ 361
N G ++VI G +V AY + E +G T E+ +
Sbjct: 199 NNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMV 258
Query: 362 -GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT---------------DSVIGEG 405
G++ + P + +D DV + IG
Sbjct: 259 NGVS---FVN-----------------PEATYIDIDVEIAPEVQIEANVILKGQTKIGAE 298
Query: 406 CVIK-NCKIHHSVVG----LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 460
V+ + S +G + + + E + + D G +
Sbjct: 299 TVLTNGTYVVDSTIGAGAVITNSMIEESSVAD----GVT--------------------V 334
Query: 461 GKNSHIKR--AIIDKNARIGDNVKIVNS 486
G +HI R + + IG+ V++ S
Sbjct: 335 GPYAHI-RPNSSLGAQVHIGNFVEVKGS 361
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 399 DSVIGEGCVIK-NCKIHH-SVVGLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 453
+S IG G + N I+H +G I G ++ GAD Y + +
Sbjct: 145 NSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV------GADGFGYANDRGNWVKIPQI 198
Query: 454 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 485
G V IG IG + I R +D + IG+ V I N
Sbjct: 199 GRVIIGDRVEIGACTTIDRGALD-DTIIGNGVIIDN 233
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 399 DSVIGEGCVIK-NCKIHHSVV-GLRSCISEGAIIEDTLLMGAD---YYETDADRRFLAAK 453
SVIGEG + ++H V G R I GA+I G + + + +A
Sbjct: 167 RSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVI------GGEGFGFANEKGVWQKIAQI 220
Query: 454 GSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVN 485
G V IG IG N+ I R + + IG+ VK+ N
Sbjct: 221 GGVTIGDDVEIGANTTIDRGALS-DTLIGNGVKLDN 255
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 399 DSVIGEGCVI-KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVP 457
+ I GC+I N I I +I+ + L+ + P
Sbjct: 26 NVYIDYGCIIRDNVHIKKGSF-----IGARSILGEYLVDFYNDRINKKH----------P 70
Query: 458 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 516
+ IG+N+ I+ +I + IGDN + + +++E + + I + I I +
Sbjct: 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTL-SDIQHHVYIGN 129
Query: 517 GTII 520
I
Sbjct: 130 YVNI 133
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 30/140 (21%)
Query: 401 VIGEGCVI-KNCKI---------------HHSVVGLRSCISEGAIIEDTLLMGADYYETD 444
I +G I + H ++G + I +I +
Sbjct: 40 HIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYG----DTIIGDNF 95
Query: 445 ADRRFLAAKGSVPIG----IGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYF 500
+ + + IG IG S I + IG+ V I ++ V E + D +
Sbjct: 96 QTGHKVTIRENTKIGNNVKIGTLSDI-----QHHVYIGNYVNIHSNVFVGEKSIIKDFVW 150
Query: 501 IKSGIVTIIKDALIPSGTII 520
+ V + D PS ++
Sbjct: 151 LFPH-VVLTNDPTPPSNELL 169
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 94/523 (17%), Positives = 153/523 (29%), Gaps = 185/523 (35%)
Query: 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIYVLT 143
+++ +IL G GTR+ P V + A ++ + I+++
Sbjct: 2 TKKALSAVILAAGKGTRM-----YSDLPKVLHTI-AGKPMVKHVIDTAHQLGSENIHLIY 55
Query: 144 QFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH 203
+ HL+ NE VL +Q GTA AV+Q F+++
Sbjct: 56 GHGGDLMRTHLA-----------NEQVNWVLQTEQ--------LGTAHAVQQAAPFFKDN 96
Query: 204 NVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 261
+ +VL GD L + E+ I+A E + L G GRI
Sbjct: 97 ENI--VVLYGDAPLITKETLEKLIEAKPENGIALLTVNLD------NPTGY------GRI 142
Query: 262 IEFSEKPKG--EQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFP 318
I + EQ K D ++ KE+ + G+ V L +
Sbjct: 143 IRENGNVVAIVEQ----K-DAN----AEQLNIKEV----NTGVMVSDGASFKKWL-ARVG 188
Query: 319 GANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL----- 361
N G +++I A +V A E G +E ++
Sbjct: 189 NNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLL 248
Query: 362 --GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT--------------------- 398
G+ I D P L +
Sbjct: 249 LEGVM---IYD-----------------PARFDLRGTLEHGKDVEIDVNVIIEGNVKLGD 288
Query: 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPI 458
IG GCV+KN I + V + E +I+ + I
Sbjct: 289 RVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGE----------------------KAAI 326
Query: 459 G----------IGKNSHI------KRAIIDKN-----------ARIGDNVKI------VN 485
G + +H+ K++ + K + IG N I N
Sbjct: 327 GPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCN 386
Query: 486 SDSVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 520
D + +T D F+ S V + A I +GT I
Sbjct: 387 YDGANK--FKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 91/521 (17%), Positives = 165/521 (31%), Gaps = 175/521 (33%)
Query: 83 DPEASRSVLGIILGGGAGTRLYPLTKKRAKPAV--PLGANYRLIDIPVSNCLNSNISKIY 140
+ ++ S+ +IL G GTR+ P V PL A ++ + + ++
Sbjct: 2 NAMSNSSMSVVILAAGKGTRM-----YSDLPKVLHPL-AGKPMVQHVIDAAMKLGAQHVH 55
Query: 141 VLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200
++ L + L+ + VL A+Q GT A++Q F
Sbjct: 56 LVYGHGGELLKKTLA-----------DPSLNWVLQAEQ--------LGTGHAMQQAAPHF 96
Query: 201 EEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRATAFG--LMKID 256
+ + L+L GD L +D +R + A E + L + +G + +
Sbjct: 97 ADDEDI--LMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLD----NPSGYGRIVRENG 150
Query: 257 EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRD 315
+ I+E K D + D +R E+ + GI V + + L
Sbjct: 151 DVVGIVE--HK-----------DAS----DAQREINEI----NTGILVANGRDLKRWL-S 188
Query: 316 KFPGANDFG----SEVIPGATSIGMRVQAYLYDGYWEDIG--------TIEAFYNANL-- 361
N G +++I A + G ++ E G +E +
Sbjct: 189 LLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAE 248
Query: 362 -----GITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT---------------DSV 401
G+ + D P L ++T +
Sbjct: 249 KLLLAGVM---LLD-----------------PSRFDLRGELTHGRDITIDTNVIIEGHVI 288
Query: 402 IGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIG- 459
+G+ I C + + V+G S IS ++ED + A+ +G
Sbjct: 289 LGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA-RLDAN----------------CTVGP 331
Query: 460 ---------IGKNSHI------KRAIIDKN-----------ARIGDNVKI------VNSD 487
+ + +H+ K+A + K A IG V I N D
Sbjct: 332 FARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYD 391
Query: 488 SVQEAARET---DGYFIKSGI-----VTIIKDALIPSGTII 520
+ +T D F+ S VT+ A I +GT +
Sbjct: 392 GANK--FKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG G+RLYP+TK
Sbjct: 27 GIILAGGTGSRLYPITK 43
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 92 GIILGGGAGTRLYPLTK 108
GI+L GG+GTRLYP+T+
Sbjct: 6 GIVLAGGSGTRLYPITR 22
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG+GTRL+P T
Sbjct: 5 GIILAGGSGTRLHPATL 21
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/17 (70%), Positives = 16/17 (94%)
Query: 92 GIILGGGAGTRLYPLTK 108
GIIL GG+GTRL+P+T+
Sbjct: 6 GIILAGGSGTRLHPITR 22
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.98 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 99.98 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.97 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.96 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.95 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.93 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.89 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.87 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.86 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.85 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.84 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.82 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.82 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.82 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.81 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.79 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.77 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.77 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.73 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.72 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.72 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.71 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.71 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.71 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.7 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.69 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.62 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.61 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.57 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.56 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.52 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.52 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.52 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.52 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.51 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.51 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.5 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.49 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.48 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.47 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.46 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.44 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.44 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.43 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.43 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.42 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.41 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.4 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.4 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.4 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.39 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.39 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.37 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.37 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.37 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.36 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.35 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.35 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.35 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.35 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.34 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.34 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.33 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.33 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.33 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.32 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.32 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.32 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.31 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.3 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.28 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.28 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.27 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.27 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.26 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.26 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.24 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.22 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.21 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.2 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.2 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.2 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.19 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.18 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.18 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.15 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.15 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.14 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.13 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.11 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.1 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.1 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.07 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.05 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.04 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.02 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.01 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.0 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.96 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.96 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.9 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.9 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.88 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.87 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.87 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.85 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.83 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.81 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.8 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.8 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.8 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.78 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.77 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.76 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.74 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.72 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.7 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.69 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.68 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.67 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.66 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.65 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.61 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.61 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.61 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.6 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.6 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.59 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.54 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.54 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.53 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.53 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.52 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.51 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.5 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.47 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.46 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.42 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.39 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.28 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.25 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.21 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.14 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.13 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.13 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.04 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.93 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.26 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.41 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 87.56 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 86.39 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 81.11 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-62 Score=520.55 Aligned_cols=448 Identities=95% Similarity=1.445 Sum_probs=366.5
Q ss_pred cCCCCCCCCCCcccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHH
Q 010006 73 SDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152 (520)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~ 152 (520)
++++...++.++..|++|+|||||||.||||+|||..+||+|+|++|++|||+|++++|.++|+++|+|+++++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~ 83 (451)
T 1yp2_A 4 SDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 83 (451)
T ss_dssp ------CCCCSSCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHH
T ss_pred ccccccceecCcccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHH
Confidence 34455566777777888999999999999999999999999999998669999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcC
Q 010006 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETD 232 (520)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~ 232 (520)
|+.+.+...++..+....++++...+.+.+++|..|++++|+.++.+++....++||+++||++++.++.++++.|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~ 163 (451)
T 1yp2_A 84 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETD 163 (451)
T ss_dssp HHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTT
T ss_pred HHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcC
Confidence 99864310111000223356665555555677889999999999988864335799999999999999999999999989
Q ss_pred CcEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHH
Q 010006 233 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNL 312 (520)
Q Consensus 233 a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~l 312 (520)
+++|+++.+...+++..||++.+|++++|..|.|||.......+.++.++++..+......++++++|+|+|++++|.++
T Consensus 164 ~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 243 (451)
T 1yp2_A 164 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL 243 (451)
T ss_dssp CSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHH
T ss_pred CcEEEEEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHH
Confidence 99999888875445678999999988999999999997766667777777765544333456799999999999998778
Q ss_pred HhhhCCCCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCcee
Q 010006 313 LRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM 392 (520)
Q Consensus 313 l~~~~~~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i 392 (520)
+++.++...+|.+++|+.+++++.+++++.++++|.||+|+++|+++++.++....+...++++.+++++.+.+.|++.+
T Consensus 244 l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 323 (451)
T 1yp2_A 244 LRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM 323 (451)
T ss_dssp HHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE
T ss_pred HHhhcccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE
Confidence 77655556678889999999867899999999999999999999999999887654556889999999999999999999
Q ss_pred ecccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEEC
Q 010006 393 LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 472 (520)
Q Consensus 393 ~~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 472 (520)
.++.|.+++||++|+|+++.|.+++||++|.||++|+|.++++++++++++........-.|.+.+.||+++.|.+++||
T Consensus 324 ~~~~I~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig 403 (451)
T 1yp2_A 324 LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIID 403 (451)
T ss_dssp EEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEEC
T ss_pred cceEEeCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeC
Confidence 88888899999999999888889999999999999999999999987776543322222222222589999999999999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|.||+|++|.+++++.++.++|++++|+++.|+||++++||+||+|
T Consensus 404 ~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 404 KNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 999999999999999998888999999999998899999999999987
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-51 Score=429.35 Aligned_cols=384 Identities=33% Similarity=0.592 Sum_probs=301.3
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
+|++|+|||||||.|+||+|||..+||+|+|++|++|||+|++++|.++|+++|+|+++++.+++.+|+.+.+. +...
T Consensus 9 mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~--~~~~ 86 (420)
T 3brk_X 9 LARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWD--FFRP 86 (420)
T ss_dssp GGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSC--CCCG
T ss_pred hhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhc--cccc
Confidence 46679999999999999999999999999999986589999999999999999999999988999999987532 1110
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+....+.++...+...++.|..|++++++.++.+++....++|++++||++++.++.++++.|++.++++++++.+.+.+
T Consensus 87 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~ 166 (420)
T 3brk_X 87 ERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRM 166 (420)
T ss_dssp GGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETT
T ss_pred cccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCcc
Confidence 11123555543332114567899999999999888643347899999999988899999999999889999988876545
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+++.+|++++|..|.|||....... .....+++++|+|+|++++|.+++++..+. ..+
T Consensus 167 ~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~--------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 232 (420)
T 3brk_X 167 EATGFGVMHVNEKDEIIDFIEKPADPPGIP--------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRD 232 (420)
T ss_dssp GGGGSEEEEECTTSBEEEEEESCSSCCCBT--------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC------
T ss_pred ccCcccEEEECCCCcEEEeEeCCCcccccc--------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCCcccc
Confidence 577899999998899999999986432100 001246899999999999987677643331 235
Q ss_pred ccccchHhhhhCCceEEEEEe-----------cceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCce
Q 010006 323 FGSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK 391 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~-----------~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 391 (520)
|..|+++.+++++ +++++.+ +++|.||||+++|+++++.++... +...++.+..++++.+.+.|++.
T Consensus 233 ~~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~ 310 (420)
T 3brk_X 233 FGKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVV-PDLDIYDKSWPIWTYAEITPPAK 310 (420)
T ss_dssp ----CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSS-CSSCTTCCSSCCCCCCCCCCCCE
T ss_pred chHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCC-chhhcCCCCCceeeccccCCCcE
Confidence 6689999998855 9999999 889999999999999999988765 44567778888999999999999
Q ss_pred ee------cccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE
Q 010006 392 ML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH 465 (520)
Q Consensus 392 i~------~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 465 (520)
+. ++.+.++.||++|+|.++.|.+|+||++|.||++|.|++++++++ +.||+++.
T Consensus 311 i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~~ 371 (420)
T 3brk_X 311 FVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQ 371 (420)
T ss_dssp EECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTCE
T ss_pred EecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCCE
Confidence 86 356689999999999448999999999999999999999888776 58999999
Q ss_pred EcceEECCCCEECCCcEEecCCCcCCcccccCCeEE-ccCeEEEcCC
Q 010006 466 IKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTIIKD 511 (520)
Q Consensus 466 i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I-~~~~v~Ig~~ 511 (520)
|.+|+||+++.||++++|.+... ...++.+| ..|+|+|.++
T Consensus 372 i~~~~ig~~~~i~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~ 413 (420)
T 3brk_X 372 LSNVVIDHGVVIPEGLIVGEDPE-----LDAKRFRRTESGICLITQS 413 (420)
T ss_dssp EEEEEECTTCEECTTCEESSCHH-----HHHHHSEECTTSCEEECHH
T ss_pred EeceEECCCCEECCCCEEeCCCC-----CCCceEEEecCceEEEecc
Confidence 99999999999999999974211 12224666 5665566554
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=392.21 Aligned_cols=390 Identities=17% Similarity=0.191 Sum_probs=283.8
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhh-hccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~-~~~~~~~~ 166 (520)
..+.+||||||+||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++++|+.+.. .++.
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~---- 82 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGR---- 82 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTS----
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCC----
Confidence 45899999999999999975 9999999987 9999999999999999999999999999999998732 2221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
. ++++ .| ++++||++||+++++++.+...+++|+++||. +++ ..+.+|++.|++.++++++++.+.+
T Consensus 83 --~-i~~~--~q-----~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~- 151 (501)
T 3st8_A 83 --T-IDVA--LQ-----DRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLD- 151 (501)
T ss_dssp --C-CEEE--EC-----SSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-
T ss_pred --c-EEEE--Ec-----CCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccC-
Confidence 1 2222 22 23499999999999998765567899999998 555 4599999999999999999998865
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~ 321 (520)
++..||.+..|++|+|+.|.|||....... ...++++|+|+|++++|.+++.....+ ..
T Consensus 152 -dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~-----------------~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e 213 (501)
T 3st8_A 152 -DPFGYGRILRTQDHEVMAIVEQTDATPSQR-----------------EIREVNAGVYAFDIAALRSALSRLSSNNAQQE 213 (501)
T ss_dssp -CCTTSCEEEECTTCCEEEEECGGGCCHHHH-----------------HCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCS
T ss_pred -CchhccccccccceeEEeeccccCCChhhc-----------------cceeeeceeeeecchhHHHhhhhhcccccccc
Confidence 588999999999999999999987543211 135899999999999999887653332 23
Q ss_pred CccccchHhhhhCCceEEEEEecceEEeCC--CHHHHHHhhhhc---------ccC---CCCCCccccCCCccccCCCcC
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDGYWEDIG--TIEAFYNANLGI---------TKK---PIPDFSFYDRSAPIYTQPRYL 387 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g~w~dI~--t~~dy~~An~~~---------l~~---~~~~~~~~~~~~~i~~~~~~~ 387 (520)
.+..+++..+...+..+.++..+..|...+ +...+.++...+ ... ..|...+++++..+...+.+.
T Consensus 214 ~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~ 293 (501)
T 3st8_A 214 LYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIH 293 (501)
T ss_dssp CCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEEC
T ss_pred cchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceec
Confidence 455788888888899999999987766544 444444332211 111 112234455566666666676
Q ss_pred CCceeec-ccc-cceEECCCcEEe-----------eeEEeeeEECCCCEECCCCEEcccEEECC-----ccccccccccc
Q 010006 388 PPSKMLD-ADV-TDSVIGEGCVIK-----------NCKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADRRF 449 (520)
Q Consensus 388 ~~~~i~~-~~i-~~~~Ig~g~~I~-----------~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~-----~~~~~~~~~~~ 449 (520)
|++.+.+ +.+ .+++|+++|.+. .+.+..+.+|.++.|+++++|.+.++++. .++|. +++
T Consensus 294 ~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~i---k~s 370 (501)
T 3st8_A 294 PGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEV---KNS 370 (501)
T ss_dssp SSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEE---ESC
T ss_pred ceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEE---ccc
Confidence 6666652 111 223333333322 22223344555555555555544433332 12222 677
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccC-----eEEEcCCCEeCCCccC
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSG-----IVTIIKDALIPSGTII 520 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~-----~v~Ig~~~~i~~gtvi 520 (520)
.+|+|+ .|++.+++.+++||+||.||+++++.|++++... +.+|++|+|+++ .|+||++|+|++||+|
T Consensus 371 ~Ig~gs---kI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 371 TIGTGT---KVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV 444 (501)
T ss_dssp EECTTC---EEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eecCCc---EEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEE
Confidence 888888 8999999999999999999999999999998876 678999999876 2889999999999986
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=380.67 Aligned_cols=380 Identities=17% Similarity=0.198 Sum_probs=259.7
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+.
T Consensus 11 ~~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~~----------- 75 (468)
T 1hm9_A 11 SNFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQ----------- 75 (468)
T ss_dssp CEEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSSS-----------
T ss_pred CCcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCCC-----------
Confidence 45899999999999984 689999999987 999999999999999999999998887776665430
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
+.++. + .+..|++++++.++.+++. ..++||+++||+ +...++.++++.|++.++++++++.+.. +
T Consensus 76 --i~~v~--~-----~~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~--~ 143 (468)
T 1hm9_A 76 --TEFVT--Q-----SEQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD--N 143 (468)
T ss_dssp --SEEEE--C-----SSCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS--C
T ss_pred --cEEEe--C-----CccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC--C
Confidence 22322 1 1248999999999988852 247899999999 4457799999999988888888887754 3
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~~ 323 (520)
+..|+.+..|++++|..|.|||...... ...++.++|+|+|+++.|.+++++.... ...+
T Consensus 144 ~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~ 206 (468)
T 1hm9_A 144 PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYY 206 (468)
T ss_dssp CTTSCEEEECTTCCEEEEECTTTCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCC
T ss_pred CCceeEEEECCCCCEEEEEECCCCChHH-----------------hcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEE
Confidence 5679999999889999999987522100 1246899999999999776676643332 2234
Q ss_pred cccchHhhhhCCceEEEEEecceEEe--CCCHHHHHHhhhhcccC------------CCCCCccccCCCccccCCCcCCC
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWED--IGTIEAFYNANLGITKK------------PIPDFSFYDRSAPIYTQPRYLPP 389 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~d--I~t~~dy~~An~~~l~~------------~~~~~~~~~~~~~i~~~~~~~~~ 389 (520)
..|+++.+++.+.+++++.++++|.+ |+|++||..++..+..+ ..|...++++.+.|...+.+.|+
T Consensus 207 ~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~ 286 (468)
T 1hm9_A 207 ITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEAN 286 (468)
T ss_dssp TTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSS
T ss_pred HHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCC
Confidence 58999999887889999999999977 55999999998654321 01212234444455545555554
Q ss_pred ceeecccccceEECCCcEEee-eEEe----------------eeEECCCCEECCCCEEcccEEEC-Ccccccccc-cccc
Q 010006 390 SKMLDADVTDSVIGEGCVIKN-CKIH----------------HSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFL 450 (520)
Q Consensus 390 ~~i~~~~i~~~~Ig~g~~I~~-~~i~----------------~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~~~~ 450 (520)
+.+. .++.||++|+|+. |.|. ++.||++|.||++|.|.+.++++ +......++ .++.
T Consensus 287 ~~i~----~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ 362 (468)
T 1hm9_A 287 VILK----GQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSS 362 (468)
T ss_dssp CEEE----SSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCE
T ss_pred cEEC----CCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeE
Confidence 4443 2344444444444 4444 44555555555555555222222 211111111 2333
Q ss_pred ccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCc-------CCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 451 AAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV-------QEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 451 ~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v-------~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+|+++ .|++.+.+.+++||+||.||.++++.+.+++ ++.+++|.++.|..+ ++||++++|++|++|
T Consensus 363 Ig~~~---~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 363 IGENT---KAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP-VELGDNSLVGAGSTI 435 (468)
T ss_dssp ECTTC---EEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred EcCCc---EeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 34443 3444444556789999999999999874444 444445555555555 778999999998874
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=371.15 Aligned_cols=355 Identities=19% Similarity=0.295 Sum_probs=262.1
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|+++++ +.+++.+.+.
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------- 66 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------- 66 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT----------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC----------
Confidence 6899999999999999999999999999987 9999999999999999999999876 6677765321
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
.+.++.. +.|..|++++++.++. .++|++++||+++. .++.++++ .+++++++.+.+ ++
T Consensus 67 ~i~~~~~------~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~--~~ 127 (401)
T 2ggo_A 67 EISIVTQ------KDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS--NP 127 (401)
T ss_dssp TCEEEEC------CTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS--CC
T ss_pred cEEEEeC------CCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC--CC
Confidence 1233321 1134788888876642 37899999999776 56777776 356778877754 35
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-cc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GS 325 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~~ 325 (520)
..|+.+..++++++..|.|||..+. ++++++|+|+|++++|. .+++..+. ..++ ..
T Consensus 128 ~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 185 (401)
T 2ggo_A 128 KDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFT-YLDKISISERGELELT 185 (401)
T ss_dssp SSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHH-HHHHSCCCSSSCBCHH
T ss_pred cceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHH-HhhhcCcCCCCceEHH
Confidence 5788888888899999999885432 35899999999999986 45543321 1222 36
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCC-CC-CccccCCCccccCCCcCCCceee-cccc-cceE
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPI-PD-FSFYDRSAPIYTQPRYLPPSKML-DADV-TDSV 401 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~-~~-~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~ 401 (520)
++++.+ +.+.+++++..+++|.||+|++||..++..++.+.. +. ...+.+.+.+...+.+.+++.+. ++.| .++.
T Consensus 186 ~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~ 264 (401)
T 2ggo_A 186 DAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVY 264 (401)
T ss_dssp HHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEE
T ss_pred HHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeE
Confidence 778877 546799999999999999999999999988765432 10 12233444444444444444442 3333 4577
Q ss_pred ECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECC
Q 010006 402 IGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 479 (520)
Q Consensus 402 Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 479 (520)
||++|.|+. |.|. +++||++|.||++|.|.+++++++ +.|++++.|.+++||+++.||+
T Consensus 265 Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~~Ig~ 325 (401)
T 2ggo_A 265 IGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDVNFGA 325 (401)
T ss_dssp ECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTCEECT
T ss_pred ECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCcEECC
Confidence 788888876 7776 677777777777777766666554 4799999999999999999999
Q ss_pred CcEEec------------------------CCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 480 NVKIVN------------------------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 480 ~~~i~~------------------------~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++|.+ ...+++.+++|.++.|.+| ++||++++|++|++|
T Consensus 326 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g-v~Ig~~~vi~~gsvv 389 (401)
T 2ggo_A 326 GTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG-VKIGAYARIYPGAVV 389 (401)
T ss_dssp TCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCC-cEECCCcEECCCCeE
Confidence 999973 4455666666666666677 788888888888864
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=371.80 Aligned_cols=379 Identities=19% Similarity=0.214 Sum_probs=259.5
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++|.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+. +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---------~ 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---------S 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---------C
Confidence 469999999999999996 789999999987 999999999999999999999999988888887651 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. + .+..|++++++.++.++++ .++||+++||+ +...++.++++.|++ .++++++.+..
T Consensus 74 ---~~~v~--~-----~~~~g~~~~i~~~~~~~~~--~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~-- 137 (459)
T 4fce_A 74 ---LNWVL--Q-----AEQLGTGHAMQQAAPHFAD--DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLD-- 137 (459)
T ss_dssp ----CEEE--C-----SSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS--
T ss_pred ---cEEEe--C-----CCCCCcHHHHHHHHHhcCC--CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecC--
Confidence 22222 1 1238999999999987752 47999999999 445679999998864 56677776654
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~ 322 (520)
++..|+.+..| +++|..+.|||...... ...+++++|+|+|+++.|.++++.... ....
T Consensus 138 ~~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 199 (459)
T 4fce_A 138 NPSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNNAQGEF 199 (459)
T ss_dssp CCTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSC
T ss_pred CCCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 35678888887 79999999986532211 124689999999999988777764321 2233
Q ss_pred ccccchHhhhhCCceEEEEEecceE--EeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w--~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..|+++.+++.+.+++++..+++| ++|+|++||..++..+..+. .|...++++.+.+..++.+.|
T Consensus 200 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~ 279 (459)
T 4fce_A 200 YITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDT 279 (459)
T ss_dssp CTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECT
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECC
Confidence 4588899988878999999999766 67999999999976543211 122223444455666666666
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccc------------------ccccc-cc
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYY------------------ETDAD-RR 448 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~------------------~~~~~-~~ 448 (520)
.+.+. .++.||++|.|+. |.|.++.||++|.|+++|.|.++.+.+++.. ...++ ++
T Consensus 280 ~~~i~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 355 (459)
T 4fce_A 280 NVIIE----GHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK 355 (459)
T ss_dssp TEEEE----EEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred Ceeec----cceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence 66553 3345555555554 5555555555555555554443333332221 11111 23
Q ss_pred ccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCc-ccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 449 FLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
+.+++++ .|++++.+.+++|++++.||+++++.+.+++.++ +++|++|.|+.+. ++||++++|++|++|
T Consensus 356 ~~i~~~~---~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 356 ARLGKGS---KAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430 (459)
T ss_dssp EEECTTC---EEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eEEcCCC---EECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 3333333 4445555567799999999999999885555442 4455555555441 789999999999875
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=361.00 Aligned_cols=381 Identities=18% Similarity=0.198 Sum_probs=267.5
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+. +
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~---------~ 70 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE---------Q 70 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC---------C
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC---------C
Confidence 568999999999999984 689999999987 999999999999999999999998888887776541 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-e-ccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
++++.. .+..|++++++.++.++++ .++||+++||+ + ...++.++++.|.+ +++++++.+.+
T Consensus 71 ---~~~v~~-------~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~-- 134 (456)
T 2v0h_A 71 ---VNWVLQ-------TEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLD-- 134 (456)
T ss_dssp ---CEEEEC-------SCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS--
T ss_pred ---cEEEeC-------CCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecC--
Confidence 223221 1238999999999877742 47899999999 3 45679999998865 57777777654
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC---CCC
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~~ 322 (520)
++..|+.+..| ++++..|.|||...... ...++.++|+|+|+++.|.++++..... ...
T Consensus 135 ~~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 196 (456)
T 2v0h_A 135 NPTGYGRIIRE-NGNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEY 196 (456)
T ss_dssp SCTTSCEEEEE-TTEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCC
T ss_pred CCCccceEEEc-CCcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhccccccccE
Confidence 35678888887 78999999987632111 1246889999999999876676543322 223
Q ss_pred ccccchHhhhhCCceEEEEEecce--EEeCCCHHHHHHhhhhcccCC------------CCCCccccCCCccccCCCcCC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFSFYDRSAPIYTQPRYLP 388 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~--w~dI~t~~dy~~An~~~l~~~------------~~~~~~~~~~~~i~~~~~~~~ 388 (520)
+..++++.+.+.+.+++++..+++ |++|+|++||..++..+..+. .|...++.+.+.+..++.+.|
T Consensus 197 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~ 276 (456)
T 2v0h_A 197 YLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDV 276 (456)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECS
T ss_pred EHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcC
Confidence 458889988887889999999765 579999999999987553221 011123333444455555555
Q ss_pred CceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCcccccccc--ccccccCCCc--------c
Q 010006 389 PSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV--------P 457 (520)
Q Consensus 389 ~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~--~~~~~~~~~~--------~ 457 (520)
++.+. .+++||++|.|+. |.|.++.||++|.|+++|.|.++.+.+++.....+. ..+++|+++. .
T Consensus 277 ~~~i~----~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~ 352 (456)
T 2v0h_A 277 NVIIE----GNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKK 352 (456)
T ss_dssp SEEEE----EEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEES
T ss_pred CcEEc----CCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEec
Confidence 55543 4677888888887 888888888888888888776655544433222211 1334444431 0
Q ss_pred eeeCCCCEE------cceEECCCCEECCCcEEecCC-------CcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 458 IGIGKNSHI------KRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 458 ~~Ig~~~~i------~~~ii~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.|++++.+ .++.||+||.||+++++.+.+ .+++++++|.++.|..+ ++||++++|++|++|
T Consensus 353 ~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 353 STVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VKVANGATIGAGTTI 427 (456)
T ss_dssp CEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEES-EEECTTCEECTTCEE
T ss_pred cEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCC-cEECCCCEECCCCEE
Confidence 112233322 346889999999999998744 44555555555555556 789999999999875
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=287.42 Aligned_cols=245 Identities=21% Similarity=0.302 Sum_probs=194.4
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC-
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN- 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~- 167 (520)
.|+|||||||.||||+|+|+.+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+.+. ....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~--~~l~~ 78 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIE--HQIQG 78 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC----------
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhh--hhhhc
Confidence 58999999999999999999999999999997 9999999999999999999999999999999987643221 0000
Q ss_pred C-------------CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-----HHHHHHHHH
Q 010006 168 E-------------GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-----YERFIQAHR 229 (520)
Q Consensus 168 ~-------------~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-----l~~ll~~h~ 229 (520)
. ..+.+....+ .+..|++++++.++.++. .++|+|++||++++.+ +.++++.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~Gt~~al~~a~~~l~---~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~ 150 (281)
T 3juk_A 79 TNKENALKSIRNIIEKCCFSYVRQ-----KQMKGLGHAILTGEALIG---NEPFAVILADDLCISHDHPSVLKQMTSLYQ 150 (281)
T ss_dssp CCHHHHHHHHHHHHHHCEEEEEEC-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEEECTTSCCHHHHHHHHHH
T ss_pred ccchhhhhhhhccccCccEEEEec-----CCCCCcHHHHHHHHHHcC---CCCEEEEeCCeeccCccchHHHHHHHHHHH
Confidence 0 0022222112 234899999999998885 3789999999999888 999999998
Q ss_pred hcCCcEEEEEEecCcccCcceEEEEeCC--CC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEe
Q 010006 230 ETDADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (520)
Q Consensus 230 ~~~a~~tl~~~~~~~~~~~~~g~v~~d~--~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (520)
+.++ .++++...+.+++..||++..|+ +| +|..|.|||..... .++++++|+|+|+
T Consensus 151 ~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiYi~~ 210 (281)
T 3juk_A 151 KYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRYILT 210 (281)
T ss_dssp HHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEC
T ss_pred HcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEEEEC
Confidence 8777 67777776656688999999986 77 99999999974321 1468899999999
Q ss_pred HHHHHHHHhhhCCC--CCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccC
Q 010006 306 KDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (520)
Q Consensus 306 ~~vl~~ll~~~~~~--~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~ 366 (520)
+++|. .+++..+. ......++++.+++.+ +++++.++++|.||||+++|++|++.++..
T Consensus 211 ~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 211 PDIFE-ILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp TTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99986 55543221 1112388999998844 999999999999999999999999987654
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=270.06 Aligned_cols=236 Identities=24% Similarity=0.365 Sum_probs=192.0
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccC-hhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~ 166 (520)
+.|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++ .+++.+++.....|++
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~~~~~---- 97 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEFGV---- 97 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC----
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhccccCc----
Confidence 468999999999999999999999999999886 9999999999999999999999975 4778888876433321
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
. +.+. .+ .+..|++++++.++.+++ .++|++++||++++.++.++++.|++.++++++++.+.+ +
T Consensus 98 --~-i~~~--~~-----~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~ 162 (269)
T 4ecm_A 98 --S-FTYR--VQ-----DKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD--D 162 (269)
T ss_dssp --E-EEEE--EC-----SSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECS--C
T ss_pred --e-EEEe--eC-----CccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECC--C
Confidence 1 2221 11 123899999999998885 379999999999998999999999988899999888765 3
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-c
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~ 324 (520)
+..|+++..| +|+|..|.|||..+. .+++++|+|+|++++|. .+++..+. ..++ .
T Consensus 163 ~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ge~~l 219 (269)
T 4ecm_A 163 PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARGELEI 219 (269)
T ss_dssp GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTSCBCH
T ss_pred CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCCeeeH
Confidence 5789999887 499999999985321 45899999999999885 55433221 2333 4
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
.++++.+++.+ ++.++.++++|.||||+++|.+|+..+....
T Consensus 220 ~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 220 TDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp HHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 78999998855 8999999999999999999999999887654
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=263.61 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=181.2
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhc--cCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~~ 166 (520)
.|+|||||||.|+||+|+|+.+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+...+ .+....
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 58999999999999999999999999999987 999999999999999999999999999999999874311 100000
Q ss_pred CCCeEEEeecccCC-----CCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEe
Q 010006 167 NEGFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALP 241 (520)
Q Consensus 167 ~~~~v~vl~~~~~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 241 (520)
+...+++++....+ .+.....|++++++.++.+++. .++|++++||++++.++.++++.|.+.++++++...+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~ 158 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF 158 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEEC
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC--CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEec
Confidence 00012222110000 0001137999999999887742 4789999999998889999999998888887765432
Q ss_pred cCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 242 MDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 242 ~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
++..|+++.+| +|+|..|.|||... .+++++|+|+|++++|. .++. ...
T Consensus 159 ----~~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~---~~~ 207 (259)
T 1tzf_A 159 ----PPGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN---DAT 207 (259)
T ss_dssp ----CCCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---TTC
T ss_pred ----CCCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---ccc
Confidence 35689988888 79999999998642 24889999999999874 3321 223
Q ss_pred CccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
+|..++++.+++. .+++++.++++|.||||++||.+++..+.....|
T Consensus 208 ~~~~~~i~~~~~~-~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~~p 254 (259)
T 1tzf_A 208 TWEQEPLMTLAQQ-GELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp CTTTHHHHHHHHT-TCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred ccHHHHHHHHHHc-CCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCCCC
Confidence 5667889998874 4899999999999999999999999988765533
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=268.38 Aligned_cols=245 Identities=23% Similarity=0.308 Sum_probs=188.6
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--C-
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--M- 162 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~- 162 (520)
+|+.|+|||||||.||||+|+|+.+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+.+. +
T Consensus 5 ~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 83 (302)
T 2e3d_A 5 NTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_dssp CCSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC
T ss_pred hhcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhh
Confidence 34568999999999999999999999999999987 9999999999999999999999998899999987532110 0
Q ss_pred --CC-----------CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc--------cH
Q 010006 163 --GG-----------YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM--------DY 221 (520)
Q Consensus 163 --~~-----------~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~--------dl 221 (520)
+. ..+ ..+.++. + .+..|++++++.++.++. .++|++++||++++. ++
T Consensus 84 ~~~~~~~l~~~~~~~~~~-~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~l 152 (302)
T 2e3d_A 84 KRVKRQLLDEVQSICPPH-VTIMQVR--Q-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_dssp ----CHHHHHHHHTSCTT-CEEEEEE--C-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEECTTSSCTTTSTH
T ss_pred hccchhhhhhhhhccccC-cceEEee--C-----CccCCHHHHHHHHHHHcC---CCcEEEEcCCccccCccccchHHHH
Confidence 00 001 0122221 1 234899999999998885 368999999998762 79
Q ss_pred HHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeC----CCC---CEEEeeeCCChhhhhhcccccccccCCchhhccCC
Q 010006 222 ERFIQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP 294 (520)
Q Consensus 222 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (520)
.++++.|++.++ +++++.+. ++++.||++..+ ++| +|..|.|||..... .+
T Consensus 153 ~~l~~~~~~~~~-~~i~~~~~--~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~-------------------~~ 210 (302)
T 2e3d_A 153 AEMIRRFDETGH-SQIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PS 210 (302)
T ss_dssp HHHHHHHHHHCC-EEEEEEEC--SCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-------------------SC
T ss_pred HHHHHHHHhcCC-cEEEEEEc--cCCCCccEEEecccccCCCCceeEEEEEECCCCCcc-------------------cc
Confidence 999999988776 67777765 346789999874 456 89999999864321 14
Q ss_pred ceeeeeEEEEeHHHHHHHHhhhCCC--CCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccC
Q 010006 295 YIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (520)
Q Consensus 295 ~l~~~GIyifs~~vl~~ll~~~~~~--~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~ 366 (520)
+++++|+|+|++++|. .+++..+. ...+..++++.+++.+ +++++.++++|.||||+++|+++++.++..
T Consensus 211 ~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~ 282 (302)
T 2e3d_A 211 NLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVEYGIR 282 (302)
T ss_dssp SEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 6899999999999886 55543332 1223478888888755 999999999999999999999999766543
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=267.94 Aligned_cols=246 Identities=20% Similarity=0.270 Sum_probs=171.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc-----C
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN-----M 162 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~-----~ 162 (520)
+.|+|||||||.||||+|+|+.+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+++.+.+.+. .
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 568999999999999999999999999999987 9999999999999999999999998899999886532100 0
Q ss_pred CC---------CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc---ccHHHHHHHHHh
Q 010006 163 GG---------YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR---MDYERFIQAHRE 230 (520)
Q Consensus 163 ~~---------~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~---~dl~~ll~~h~~ 230 (520)
+. ..+ ..+.++. + .+..|++++++.++.+++ .++|++++||++++ .++.++++.|++
T Consensus 92 ~~~~~~~~~~~~~g-~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~l~~l~~~~~~ 160 (297)
T 2ux8_A 92 GKSLDVLDGTRLKP-GNIAYVR--Q-----QEPMGLGHAVWCARDIVG---DEPFAVLLPDDFMFGQPGCLKQMVDAYNK 160 (297)
T ss_dssp TCCGGGGTTSCCST-TSEEEEE--C-----CSCCCHHHHHHTTHHHHC---SSCEEEECTTEEEESSSCHHHHHHHHHHH
T ss_pred cchhhhhhhcccCC-CceEEEe--C-----CCCCChHHHHHHHHHHcC---CCcEEEEeCCeecCCChHHHHHHHHHHHh
Confidence 00 001 1133322 1 134899999999998875 37899999999877 569999999987
Q ss_pred cCCcEEEEEEecCcccCcceEEEEeCC--CC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeH
Q 010006 231 TDADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (520)
Q Consensus 231 ~~a~~tl~~~~~~~~~~~~~g~v~~d~--~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~ 306 (520)
.++ .++++.+.+.+++..||++..|+ ++ +|..|.|||..... .++++++|+|+|++
T Consensus 161 ~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~ 220 (297)
T 2ux8_A 161 VGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGRYILQP 220 (297)
T ss_dssp HCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEEEEECT
T ss_pred cCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEEEEECH
Confidence 765 56666665444567899887663 45 89999999864221 13588999999999
Q ss_pred HHHHHHHhhhCCC-CCCc-cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 307 DVMLNLLRDKFPG-ANDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 307 ~vl~~ll~~~~~~-~~~~-~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
++|. .+++..++ ..++ ..++++.+++. .+++++.++++|.||||+++|.+++..+....
T Consensus 221 ~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~ 281 (297)
T 2ux8_A 221 EVMR-ILENQGKGAGGEIQLTDAMQRMIGD-QPFHGVTFQGTRYDCGDKAGFIQANLAVALSR 281 (297)
T ss_dssp HHHH-HHHHTC--------CCTTGGGGTTT-SCEEEEECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHhhCCCCCCeeEHHHHHHHHHhc-CCEEEEEecceEEeCCCHHHHHHHHHHHHhcC
Confidence 9886 55543332 1122 37889988874 59999999999999999999999998776543
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=265.80 Aligned_cols=249 Identities=20% Similarity=0.254 Sum_probs=190.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhcc--CCC-
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG- 164 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~- 164 (520)
+.|+|||||||.||||+|+|+.+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.|. +..
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 358999999999999999999999999999987 9999999999999999999999998899988876533221 000
Q ss_pred ----------C--cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc--ccHHHHHHHHHh
Q 010006 165 ----------Y--KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRE 230 (520)
Q Consensus 165 ----------~--~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~ 230 (520)
. .+ ..+.++. + .+..|++++++.++.++.+ ..+.|++++||++++ .++.++++.|++
T Consensus 90 ~~~~~~~~~~~~~~g-~~i~~~~--~-----~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~ 160 (323)
T 2pa4_A 90 GKTDQVEIIRRAADL-IKAVPVT--Q-----DKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAE 160 (323)
T ss_dssp TCHHHHHHTTHHHHH-CEEEEEE--C-----SSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHT
T ss_pred chhhhhhhhhccccC-cceEEEe--C-----CccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHh
Confidence 0 00 1122221 1 1238999999999877753 123499999999876 569999999987
Q ss_pred cCCcEEEEEEecCcccCcceEEEEeC----CCC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEE
Q 010006 231 TDADITVAALPMDEKRATAFGLMKID----EEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVI 304 (520)
Q Consensus 231 ~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyif 304 (520)
.++ .++++.+.+.++...||++..| +++ +|..|.|||..... .+++.++|+|+|
T Consensus 161 ~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~GiY~~ 220 (323)
T 2pa4_A 161 FGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAATGRYLL 220 (323)
T ss_dssp TCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEE
T ss_pred cCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEEEEEEE
Confidence 665 5666666654567789999876 454 99999999864321 146889999999
Q ss_pred eHHHHHHHHhhhCCCC-CCc-cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 305 SKDVMLNLLRDKFPGA-NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 305 s~~vl~~ll~~~~~~~-~~~-~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
++++|. .+++..++. .++ ..++++.+++.+.+++++.++++|.||||+++|.++++.++...
T Consensus 221 ~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~ 284 (323)
T 2pa4_A 221 DRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSH 284 (323)
T ss_dssp ETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTC
T ss_pred CHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcC
Confidence 999886 444433321 223 37889999886789999999999999999999999998776543
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=261.49 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=188.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceec--CCccchhHHHHHHhHhCCCCeEEEEeccCh-hHHHHHHHHhhhccCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMG 163 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv--~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~ 163 (520)
||+|.|||||||.|+||+| ||+|+|+ +|+ |||+|+++++.++|+++|+|++++.. +.+.+|+.+.+.+...
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIP 76 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTSC
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCCc
Confidence 5678999999999999997 6999999 476 99999999999999999999999984 8999999886655321
Q ss_pred CCcCCCeEEEe-eccc-------CCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHh---c
Q 010006 164 GYKNEGFVEVL-AAQQ-------SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE---T 231 (520)
Q Consensus 164 ~~~~~~~v~vl-~~~~-------~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~---~ 231 (520)
+.++ +... ......+.+||+++|++++.+++ ++|+|++||++++.+ +.++++.|.+ .
T Consensus 77 -------i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~----~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~ 145 (303)
T 3pnn_A 77 -------VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR----EPFAVINADDFYGRNGFEVLARKLMTLEGK 145 (303)
T ss_dssp -------EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC----SCEEEEESSCBCCHHHHHHHHHHHHTTTTC
T ss_pred -------EEEEecccccccccccccccccccCCcHHHHHHHHHhcC----CCEEEEECCeecCHHHHHHHHHHHHHhccc
Confidence 2222 1100 00001135899999999988773 689999999999876 9999999975 5
Q ss_pred CCcEEEEEEecCcccCcce-----EEEEeCCCCCEEEeeeCCChhhhhh-cccccccccCCchhhccCCceeeeeEEEEe
Q 010006 232 DADITVAALPMDEKRATAF-----GLMKIDEEGRIIEFSEKPKGEQLKA-MKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (520)
Q Consensus 232 ~a~~tl~~~~~~~~~~~~~-----g~v~~d~~g~V~~~~ekp~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (520)
++++++++.+.++. .+.| |++.+|++|+|+.|.|||....... ..++.. -+ .......+.++++|+|+|+
T Consensus 146 ~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~-~g--~~~~~~~~~~i~~GiY~f~ 221 (303)
T 3pnn_A 146 QGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE-TG--KICTLAEDAPVSMNMWGFT 221 (303)
T ss_dssp SSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT-TS--CEEEECTTCEEEEEEEEEC
T ss_pred cCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc-cc--ccccCCCCCEEEEEEEEEC
Confidence 67888888876532 1444 7888998899999999997531000 000000 00 0000012468999999999
Q ss_pred HHHHHHHHh-------hhCC--CCCCccccchHhhhhCCc-eEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 306 KDVMLNLLR-------DKFP--GANDFGSEVIPGATSIGM-RVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 306 ~~vl~~ll~-------~~~~--~~~~~~~dil~~li~~~~-~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
+++|..+.+ +..+ ....+..++++.+++++. +++++.++++|+||||+++|.+++..+..
T Consensus 222 ~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 222 PDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp THHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 999874422 0111 222345889999998776 99999999999999999999999887643
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=253.96 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=172.8
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhh-ccCCCCcCCC
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYA-SNMGGYKNEG 169 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~-~~~~~~~~~~ 169 (520)
+||||||.||||+|+|..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+ +.+++.+... ++. .
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~------~ 73 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGI------K 73 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTC------S
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCC------C
Confidence 79999999999999999999999999987 999999999999 799999999998876 6566655321 111 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhh---cCcceEEEEeCceec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE---HNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~---~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.+.++.. + .+..||++++++++.++.. ..+++|+|++||+++ +.++.++ ..+++.++++.+.+.
T Consensus 74 ~~~~~~~-~-----~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 74 QFYIAEL-H-----TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp SEEEEEE-S-----SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred CceEEEe-C-----CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 1112111 1 1348999999999998831 135789999999988 4556543 245678888887653
Q ss_pred cCcceEEEEeCCCC--CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHH-HHHHHHh----hhCC
Q 010006 246 RATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLR----DKFP 318 (520)
Q Consensus 246 ~~~~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~ll~----~~~~ 318 (520)
+ .||++..|++| +|++|.||+.. ++++++|+|+|++. .|.+.+. ...+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 89999999888 99999999432 34899999999975 3433332 2211
Q ss_pred ---CCCCccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhc
Q 010006 319 ---GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 319 ---~~~~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~ 363 (520)
....+.+|+++.+++.+.++.++.++ ++|+|+||+++|.++....
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 23345689999999888999999996 9999999999999987654
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=253.23 Aligned_cols=233 Identities=23% Similarity=0.366 Sum_probs=182.6
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEec-cChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+|+|||||||.||||+|+|..+||+|+|++|+ |||+|+++++..+|+++|+|++. ++.+.+.+++.+...|++
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~----- 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGL----- 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC-----
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcccccCc-----
Confidence 58999999999999999999999999999987 99999999999999999998884 567788888877544321
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
. +.+. .+. ...|+++++..++.++.+ ++++++.||++ .+.++.++++.|.+.+.++++++.++.+
T Consensus 76 -~-i~~~--~~~-----~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 141 (293)
T 1fxo_A 76 -D-LQYA--VQP-----SPDGLAQAFLIGESFIGN---DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD-- 141 (293)
T ss_dssp -E-EEEE--ECS-----SCCCGGGHHHHTHHHHTT---SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--
T ss_pred -e-EEEe--eCC-----CCCCHHHHHHHHHHHhCC---CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC--
Confidence 1 2222 121 137999999999988853 68888889995 4678999999998777778877777543
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-c
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~ 324 (520)
+..||++..|++|+|..|.|||..+. ++++.+|+|+|+++++. .++...+. ..++ .
T Consensus 142 p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ge~~~ 199 (293)
T 1fxo_A 142 PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGELEI 199 (293)
T ss_dssp GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSCCH
T ss_pred cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHH-HHHhcCcccCCceeH
Confidence 56899999998899999999985332 35889999999999987 44433332 2233 3
Q ss_pred ccchHhhhhCCceEEEEEec-ce-EEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~-g~-w~dI~t~~dy~~An~~~l 364 (520)
.|+++.+++ ..++.++... ++ |.||||++||.+|+..+.
T Consensus 200 td~~~~~l~-~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 200 TDVNRAYLE-RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp HHHHHHHHH-TTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 788888887 4467777775 74 999999999999987653
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=250.88 Aligned_cols=233 Identities=22% Similarity=0.352 Sum_probs=181.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEec-cChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+|+|||||||.||||+|+|..+||+|+|++|+ |||+|+++.+..+|+++|+|+++ ++.+.+.+++.+...|++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g~~~g~----- 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGV----- 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTS-----
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhccccCc-----
Confidence 37999999999999999999999999999987 99999999999999999999886 667888888877544421
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
. +.+. .+. +..|+++++..++.++.+ ++++++.||++ ++.++.++++.|.+.+.++++++.++.+
T Consensus 77 -~-i~~~--~~~-----~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 142 (295)
T 1lvw_A 77 -R-FSYR--VQE-----EPRGIADAFIVGKDFIGD---SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD-- 142 (295)
T ss_dssp -E-EEEE--ECS-----SCCCGGGHHHHTHHHHTT---SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--
T ss_pred -e-EEEe--eCC-----CCCChHHHHHHHHHHhCC---CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--
Confidence 1 2222 121 137999999999988853 67888889994 4678999999998777778887777643
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-c
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~ 324 (520)
+..||++..|++++|..|.|||..+. +++..+|+|+|+++++.. +....+. ..++ .
T Consensus 143 p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~-~~~~~~~~~ge~~~ 200 (295)
T 1lvw_A 143 PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEI-ARRIEPSDRGELEI 200 (295)
T ss_dssp CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHH-HHHCCCCTTSCCCH
T ss_pred cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHH-HHhcCCcccCceeH
Confidence 55799999998999999999985332 348899999999999874 4433322 2223 3
Q ss_pred ccchHhhhhCCceEEEEEec-ce-EEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~-g~-w~dI~t~~dy~~An~~~l 364 (520)
+++++.+++ ..++.++.+. ++ |.||||++||.+++..+.
T Consensus 201 td~~~~~l~-~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 201 TSVNEEYLR-MGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 778888787 4467777775 64 999999999999987653
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=252.41 Aligned_cols=233 Identities=22% Similarity=0.339 Sum_probs=181.8
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEec-cChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.+..+|+++|+|+++ ++.+.+.+++.+...|++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~----- 76 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGI----- 76 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC-----
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcccccCc-----
Confidence 37999999999999999999999999999997 99999999999999999999886 667888888877443321
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
. +.+. .+. +..|+++++..++.++.+ ++++++.||++ ++.++.++++.|.+.+.++++++.++.+
T Consensus 77 -~-i~~~--~~~-----~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 142 (296)
T 1mc3_A 77 -Q-LEYA--EQP-----SPDGLAQAFIIGETFLNG---EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD-- 142 (296)
T ss_dssp -E-EEEE--ECS-----SCCCSTHHHHHTHHHHTT---SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--
T ss_pred -e-EEEe--ccC-----CCCCHHHHHHHHHHHhCC---CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--
Confidence 1 2222 121 137999999999988853 67877889984 4678999999997766777887777543
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCCc-c
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~~-~ 324 (520)
+..||++..|++|+|..|.|||..+. ++++.+|+|+|+++++. .++...+. ..++ .
T Consensus 143 p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ge~~~ 200 (296)
T 1mc3_A 143 PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEI 200 (296)
T ss_dssp CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCH
T ss_pred cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHH-HHHhcCccccCCccH
Confidence 55899999988899999999986332 35889999999999986 44433332 2223 3
Q ss_pred ccchHhhhhCCceEEEEEec-ce-EEeCCCHHHHHHhhhhcc
Q 010006 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~-g~-w~dI~t~~dy~~An~~~l 364 (520)
.++++.+++ ..++.++.+. ++ |.||||+++|.+++..+.
T Consensus 201 td~~~~~l~-~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 201 TSINQMYLE-AGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp HHHHHHHHH-TTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 778888887 4467777775 75 999999999999987654
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=252.63 Aligned_cols=242 Identities=18% Similarity=0.285 Sum_probs=156.7
Q ss_pred cceEEEEEeCCCCCCCCcccc-CCCccceecC-CccchhHHHHHHhHhCCCCeEEEEeccCh-hHHHHHHHHhhhccCCC
Q 010006 88 RSVLGIILGGGAGTRLYPLTK-KRAKPAVPLG-ANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~-~~pK~Llpv~-G~~plI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (520)
++|+|||||||.||||+|||. .+||+|+|++ |+ |||+|+++++.++ +++|+|+++++. +.+.+++.+. |+
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~--~~--- 75 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE--IK--- 75 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT--CS---
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh--hC---
Confidence 468999999999999999997 7999999995 65 9999999999999 999999999874 5677777652 11
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceec-ccc-HHHHHHH---HHhcCCcEEEEE
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQA---HRETDADITVAA 239 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~---h~~~~a~~tl~~ 239 (520)
...+.++... +..||+++++.++.++. .++.|++++||+++ +.+ +.++++. |.+.++++|+++
T Consensus 76 ---~~~~~~i~~~-------~~~gt~~al~~a~~~l~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 143 (308)
T 2qh5_A 76 ---NKSVGFLLES-------LSKNTANAIALSALMSD--KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGV 143 (308)
T ss_dssp ---SCEEEEEEES-------SCCCHHHHHHHHHHTSC--TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ---CCccEEEeCC-------CCCChHHHHHHHHHHhC--CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 1012232211 13799999999988773 23469999999987 666 9999987 667777888887
Q ss_pred EecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC
Q 010006 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (520)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~ 319 (520)
.+.. ++..||++..|++++|..|.|||.......+ ....++++++|+|+|++++|.+.+++..+.
T Consensus 144 ~~~~--~~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-------------~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~ 208 (308)
T 2qh5_A 144 SIDK--PNTEFGYIESPNGLDVKRFIEKPSLDKAIEF-------------QKSGGFYFNSGMFVFQAGVFLDELKKHAPT 208 (308)
T ss_dssp ECSS--CCTTSEEEECSSSSBCSEEEESCCHHHHHHH-------------HHHCCEEEEEEEEEEEHHHHHHHHHHHCHH
T ss_pred ecCC--CCCCceEEEECCCCEEEEEEECCChHHHHHH-------------hhcCCeEEEeEEEEEEHHHHHHHHHHhChH
Confidence 7653 3578999988877999999999986532211 011246899999999998874454432211
Q ss_pred ------------C------CCcc---ccchH--------h-hhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 320 ------------A------NDFG---SEVIP--------G-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 320 ------------~------~~~~---~dil~--------~-li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
. .++. .++++ . +++.+.++++++++++|.||||+++|++++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 209 ILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred HHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 0 1111 24443 2 566578999999999999999999999998754
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=246.96 Aligned_cols=235 Identities=20% Similarity=0.296 Sum_probs=172.8
Q ss_pred eEEEEEeCCCCCCCCccc-cCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCc
Q 010006 90 VLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT-~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (520)
|++||||||.||||+||| +..||+|+|++|.+|||+|+++++.++ |+++|+|+++++. +.+.+++.+...+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~------ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDE------ 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGG------
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccc------
Confidence 799999999999999999 779999999998349999999999996 8999999999864 5667777652111
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccc--cHH----HHHHHHHhcCCcEEEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM--DYE----RFIQAHRETDADITVAAL 240 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~--dl~----~ll~~h~~~~a~~tl~~~ 240 (520)
. + ++.+ +..||+.++..+...+. .++.+++++||+++.. ++. .+++.|++.++.+|+.+.
T Consensus 76 --~-i-i~e~--------~~~gta~ai~~a~~~~~--~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~ 141 (336)
T 2x65_A 76 --N-I-IAEP--------MKKNTAPACFIGTKLAD--DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIV 141 (336)
T ss_dssp --G-E-EEES--------SCCCHHHHHHHHHTTSC--TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred --e-E-EeCC--------CCCCcHHHHHHHHHhhC--CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEee
Confidence 1 1 2221 12799999998876542 2467999999997643 444 445557665677777776
Q ss_pred ecCcccCcceEEEEeCCC-----CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 241 PMDEKRATAFGLMKIDEE-----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~-----g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
+.. +.+.||++..|++ ++|..|.|||.......+ .....|++++|+|+|++++|.+.+++
T Consensus 142 p~~--~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 142 PTR--PETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp CCS--CCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHHHHHHHH
T ss_pred ccc--CCCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHHHHHHHH
Confidence 643 3578999988764 799999999987543211 11234789999999999988545443
Q ss_pred hCCC----------CC-CccccchHh---------hhhCCceEEEEEecceEEeCCCHHHHHHh
Q 010006 316 KFPG----------AN-DFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (520)
Q Consensus 316 ~~~~----------~~-~~~~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~dy~~A 359 (520)
..+. .. +|..++++. +++.+.++++++++++|.||||+++|+++
T Consensus 207 ~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 207 CEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 3221 01 233555664 45556899999999999999999999999
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=241.39 Aligned_cols=235 Identities=22% Similarity=0.293 Sum_probs=168.7
Q ss_pred ceEEEEEeCCCCCCCCccc-cCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCC
Q 010006 89 SVLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT-~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (520)
+|.+||||||.||||+||| ..+||+|+|++|.+|||+|+++++.++ |+++|+|+++++. +.+.+++..
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--------- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--------- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS---------
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc---------
Confidence 4899999999999999999 589999999998349999999999998 8999999998764 344444332
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc-CcceEEEEeCceeccc--cHHHHHH----HHHhcCCcEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYRM--DYERFIQ----AHRETDADITVA 238 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~~--dl~~ll~----~h~~~~a~~tl~ 238 (520)
..+ ++.+ +..||+.++..+.. +... .++.+++++||+++.. .+..+++ .|++ ++.+|+.
T Consensus 73 ---~~~-i~e~--------~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~ 138 (337)
T 2cu2_A 73 ---IRL-LLEP--------LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALG 138 (337)
T ss_dssp ---SEE-EEES--------SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEE
T ss_pred ---Cce-EecC--------CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEe
Confidence 111 2221 13789999998877 5421 3578999999997653 3554444 3433 5667777
Q ss_pred EEecCcccCcceEEEEeCCC----CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHh
Q 010006 239 ALPMDEKRATAFGLMKIDEE----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (520)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~----g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (520)
+.+.. +++.||++..+++ ++|..|.|||.......+. ... +++++|+|+|++++|.+.++
T Consensus 139 i~p~~--~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g-~~~n~Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 139 LRPTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI-------------RKG-YVWNGGVFAFAPATMAELFR 202 (337)
T ss_dssp ECCSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH-------------HTT-CEEEEEEEEECHHHHHHHHH
T ss_pred eccCC--CCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh-------------hcC-CEEEEEEEEEeHHHHHHHHH
Confidence 76643 4578999988765 7999999999865432210 112 79999999999998854555
Q ss_pred hhCCCC---------CCccccchHh---------hhhCCceEEEEEecceEEeCCCHHHHHHhhhh
Q 010006 315 DKFPGA---------NDFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (520)
Q Consensus 315 ~~~~~~---------~~~~~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~ 362 (520)
+..+.. +....+.++. +++.+.++++++++++|.||||+++|+++...
T Consensus 203 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~~ 268 (337)
T 2cu2_A 203 RHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFSQ 268 (337)
T ss_dssp HHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHTS
T ss_pred HHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhhc
Confidence 433210 0001233443 45557899999999999999999999998653
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=227.14 Aligned_cols=219 Identities=13% Similarity=0.177 Sum_probs=158.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
+|.|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.. +.
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~-~~--------- 93 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK-YG--------- 93 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH-HC---------
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh-CC---------
Confidence 58999999999999999999999999999987 99999999999999999999999887777544322 21
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+.++...+ . ...|++++++.++..++ ++++++||+++..+ +..++ +.++.+++ ...+ +.
T Consensus 94 --~~iv~~~~--~---~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~~~~-~~ 153 (254)
T 1jyk_A 94 --VRLVFNDK--Y---ADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TRSTYFSV---YRED-CT 153 (254)
T ss_dssp --CEEEECTT--T---TTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CSEEEEEC---EESS-CS
T ss_pred --cEEEECCC--c---cCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hCCceEEE---Eccc-CC
Confidence 23332211 1 12689999998876653 48999999976555 33322 22222222 2221 22
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHH---HHHhhhCCC---CC
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML---NLLRDKFPG---AN 321 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~---~ll~~~~~~---~~ 321 (520)
..|+++ +|++|+|+.|.|++.. .++++|+|+|+++.+. +++++..+. ..
T Consensus 154 ~~~~v~-~d~~g~v~~~~e~~~~------------------------~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e 208 (254)
T 1jyk_A 154 NEWFLV-YGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 208 (254)
T ss_dssp SCCEEE-ECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCeEEE-ECCCCeEEEEEECCCC------------------------CcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccc
Confidence 368755 7888999999987531 3789999999987443 334332221 23
Q ss_pred CccccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcc
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l 364 (520)
.+.++++..+.+ +.+++++.++ ++|.+|||++||.++++.+.
T Consensus 209 ~~~~d~~~~l~~-~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 209 LYWDNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp CCTTHHHHTTGG-GCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHh-hCCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 345777777766 7899999998 79999999999999998764
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=219.33 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=171.6
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
++.|||||||.|||| | ||+|+|++|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~-~g--------- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA-FG--------- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT---------
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH-cC---------
Confidence 589999999999999 3 7999999997 99999999999999999999994 5778888765 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
++++... +++..||++ +..++..+.....+.|++++||. ++ ..++.++++.|.+.++++++++.++++
T Consensus 63 --~~v~~~~-----~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~-- 132 (252)
T 3oam_A 63 --GVVCMTS-----PNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIED-- 132 (252)
T ss_dssp --CEEEECC-----TTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECC--
T ss_pred --CEEEEcC-----CCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCC--
Confidence 2232221 123478877 56666555311257899999999 44 456999999998888889999888753
Q ss_pred Ccce-----EEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 247 ATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 247 ~~~~-----g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
+..| +.+..|++|+++.|.++|-........ ... ......++.++|+|+|++++|..+... .+...
T Consensus 133 ~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~-------~~~-~~~~~~~~~n~GiY~~~~~~l~~~~~~-~~~~~ 203 (252)
T 3oam_A 133 EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA-------KAD-KAIVQPLLRHIGIYAYRAGFINTYLDW-QPSQL 203 (252)
T ss_dssp HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH-------SSS-CCCCSCEEEEEEEEEEETTHHHHHHHS-CCCHH
T ss_pred HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc-------ccc-ccccccceEEEEEEEcCHHHHHHHHcC-CCCcc
Confidence 3455 888999999999999987543211000 000 000125689999999999999876542 22111
Q ss_pred CccccchHh--hhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccC
Q 010006 322 DFGSEVIPG--ATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 366 (520)
Q Consensus 322 ~~~~dil~~--li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~ 366 (520)
+. .|.|.. ++++|.+|.++..+ .+|.+|||++||.+++..+..+
T Consensus 204 e~-~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 204 EK-IECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cc-cchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 11 123332 34558999998775 4689999999999999876543
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=206.66 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=163.4
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|++.|||||||.||||. ||+|+|++|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~-~g-------- 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED-FG-------- 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-cC--------
Confidence 46899999999999995 7999999997 99999999999999999999985 5777777764 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~a~~tl~~~~~~~ 244 (520)
++++.. .+++..|+++ ++.++..+.....+.|+++.||. ++. ..+.++++.+.+. ++++++++.++.+
T Consensus 70 ---~~v~~~-----~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~ 140 (256)
T 3tqd_A 70 ---AVVCMT-----SSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITE 140 (256)
T ss_dssp ---CEEEEC-----CTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCC
T ss_pred ---CeEEEe-----CCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCC
Confidence 223221 1234478865 77887777421357899999999 554 5699999999874 5577777777643
Q ss_pred ----ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 245 ----KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 245 ----~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
.++..++ |..|++|+++.|.++|.+....... .........+++...|+|.|++++|..+... .+..
T Consensus 141 ~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l-~~s~ 211 (256)
T 3tqd_A 141 VDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLSW-DACP 211 (256)
T ss_dssp HHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred HHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHhC-CCCc
Confidence 2334454 4578899999999998743211000 0000001235789999999999999866432 2211
Q ss_pred CCcc-ccchHh--hhhCCceEEEEEecce-EEeCCCHHHHHHhhhh
Q 010006 321 NDFG-SEVIPG--ATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLG 362 (520)
Q Consensus 321 ~~~~-~dil~~--li~~~~~v~a~~~~g~-w~dI~t~~dy~~An~~ 362 (520)
++ .+-|.+ +++.|++|+++..+++ |.+||||+||.+++..
T Consensus 212 --lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 212 --AEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp --HHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred --ccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 22 123332 3566999999999875 8999999999998764
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=206.25 Aligned_cols=237 Identities=16% Similarity=0.169 Sum_probs=167.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|++.|||||||.||||. +|+|+|++|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ +.
T Consensus 17 M~~~aIIlA~G~stRlp------~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~-~g-------- 78 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA-AG-------- 78 (264)
T ss_dssp -CCEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CceEEEEEcCCCCCCCC------CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-cC--------
Confidence 56899999999999993 5999999997 99999999999999999999984 5677777764 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
++++.. .++|..|++. +..++..++....+.|+++.||. ++. ..+.++++.+.+.++++++++.++.+.
T Consensus 79 ---~~v~~~-----~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~ 149 (264)
T 3k8d_A 79 ---GEVCMT-----RADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNA 149 (264)
T ss_dssp ---CEEEEC-----CTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSH
T ss_pred ---CEEEEe-----cCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCH
Confidence 223221 1234478865 77777776422357899999999 444 569999999988888999999887642
Q ss_pred ----cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 246 ----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 246 ----~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
++..+. +..|++|+++.|.+||..........+ +.....+++..+|+|.|++++|..+... .+ .
T Consensus 150 ~~~~~p~~vk-Vv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~--~ 217 (264)
T 3k8d_A 150 EEAFNPNAVK-VVLDAEGYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRYVNW-QP--S 217 (264)
T ss_dssp HHHTCTTSCE-EEECTTSBEEEEESSCCSCCHHHHHHC--------SSCCCSCCEEECSEEEEEHHHHHHHHHS-CC--C
T ss_pred HHccCCCceE-EEECCCCeEEEEecCCCCCCCcccccc--------ccccCCcceEEEEEEEECHHHHHHHHhC-CC--C
Confidence 223333 457889999999999863211100000 0000124689999999999999876542 11 1
Q ss_pred Ccc-ccchHh--hhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhc
Q 010006 322 DFG-SEVIPG--ATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 322 ~~~-~dil~~--li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~ 363 (520)
.++ .|.|.+ +++.|.+|+++... .+|.+||||+||..++..+
T Consensus 218 ~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 218 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 122 223332 34569999999765 4689999999999998643
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=192.10 Aligned_cols=237 Identities=13% Similarity=0.130 Sum_probs=165.5
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHH-HHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPV-SNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l-~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
+.|||||+|.||||. +|+|+|++|+ |||+|++ +.+.++++++|+|+++ .+.+.+++.+ +.
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~-~g--------- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATD--DERIAEICRA-EG--------- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHT-TT---------
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHH-cC---------
Confidence 579999999999997 4999999997 9999999 9999999999999995 4667776654 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc-
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE- 244 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~a~~tl~~~~~~~- 244 (520)
++++... +++..|+ +++..++..+.....+.++++.||. +.+ ..+.++++.|.+. +..++.++.+..+
T Consensus 63 --~~v~~~~-----~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~ 134 (253)
T 4fcu_A 63 --VDVVLTS-----ADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHAL 134 (253)
T ss_dssp --CCEEECC-----TTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCH
T ss_pred --CeEEEeC-----CCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCH
Confidence 1222111 1223566 5788888777532357899999999 665 5699999999876 3444444444321
Q ss_pred ---ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 245 ---~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
.++..+. +..|++|+++.|.++|.......... ..+ .....++.+.|+|.|++++|.++.. .+ ..
T Consensus 135 ~~~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~~~-------~~~-~~~~~~~~~~GiY~f~~~~l~~~~~--~~-~~ 202 (253)
T 4fcu_A 135 DEFQRDSIVK-VVMSKQNEALYFSRATIPYDRDGAKR-------DEP-TLHTQAFRHLGLYAYRVSLLQEYVT--WE-MG 202 (253)
T ss_dssp HHHHCTTSCE-EEECTTSBEEEEESSCCSCCTTTSSS-------SSC-CCCSCCEEEEEEEEEEHHHHHHHTT--SC-CC
T ss_pred HHccCCCccE-EEECCCCeEEEecCCCCCCCCCcccc-------ccc-ccccceeEEEEEEEeCHHHHHHHHh--CC-CC
Confidence 3455554 46788999999999876432110000 000 0012468899999999999987653 12 22
Q ss_pred Ccc-ccchHhh--hhCCceEEEEEecce-EEeCCCHHHHHHhhhhccc
Q 010006 322 DFG-SEVIPGA--TSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 322 ~~~-~dil~~l--i~~~~~v~a~~~~g~-w~dI~t~~dy~~An~~~l~ 365 (520)
.++ .|.|.++ ++.|++|+++..+++ |.+|||++||..++..+..
T Consensus 203 ~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~ 250 (253)
T 4fcu_A 203 KLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVE 250 (253)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGG
T ss_pred cccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 232 3445443 456999999999999 9999999999999987654
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=192.40 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=154.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+.
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~----------- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL----------- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----------
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----------
Confidence 5899999999999997 8999999987 9999999999999 9999999976 6677666541
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecC-cc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD-EK 245 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~-~~ 245 (520)
+.++... +++..|+++++ .++..+ ..+.+++++||+ +++ .++.++++.|.+.++.++++..... ..
T Consensus 61 --~~~~~~~-----~~~~~g~~~~~-~~~~~~---~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (234)
T 2y6p_A 61 --CEVFLTP-----SDLPSGSDRVL-YVVRDL---DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYE 129 (234)
T ss_dssp --SEEEECC-----TTCCSHHHHHH-HHHTTC---CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGG
T ss_pred --eEEEECC-----cccccchHHHH-HHHHhC---CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhc
Confidence 1222111 11236777755 344333 347899999999 877 6799999999877644444443211 11
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
++..+++ ..|++|+|..|.+||....... ...+.+.++|+|+|+++.|.++.+. .+...+. .
T Consensus 130 ~~~~~~~-~~~~~g~v~~~~e~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~-~ 191 (234)
T 2y6p_A 130 RPEDVKV-VLDREGYALYFSRSPIPYFRKN---------------DTFYPLKHVGIYGFRKETLMEFGAM-PPSKLEQ-I 191 (234)
T ss_dssp CTTSCEE-EECTTSBEEEEESSCCSCCSSC---------------CSSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHH-H
T ss_pred CCCceEE-EEcCCCCEeeeecCCCCccccc---------------ccceeeEEEEEEEcCHHHHHHHHhC-CCCccch-h
Confidence 2334443 4577899999999874310000 0002467999999999998866542 1111111 1
Q ss_pred cchH--hhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~--~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
|.+. .++..+.+++++..+++|.||+|++||..++..+
T Consensus 192 d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 192 EGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 1122 2344488999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=193.55 Aligned_cols=227 Identities=16% Similarity=0.277 Sum_probs=158.6
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCC-CeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI-SKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~~-------- 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-FG-------- 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-TT--------
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH-cC--------
Confidence 589999999999999 5 8999999987 999999999999996 999999975 667777665 11
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~a~~tl~~~~~~~ 244 (520)
++++... +++..|+++.+ .++..++ .+.+++++||+ +.+ .++.++++.|.+. ++++++++.+.+.
T Consensus 64 ---~~~~~~~-----~~~~~g~~~~~-~~~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (245)
T 1h7e_A 64 ---GKAIMTR-----NDHESGTDRLV-EVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISA 131 (245)
T ss_dssp ---CEEEECC-----SCCSSHHHHHH-HHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECH
T ss_pred ---CeEEeCC-----CccCCcHHHHH-HHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCH
Confidence 2333211 12336775544 4444442 47899999999 444 5699999999887 7788777766521
Q ss_pred c---cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 010006 245 K---RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (520)
Q Consensus 245 ~---~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (520)
. ++.... +..+++|++..|.+++....... ...+.+.++|+|+|+++.|.++++ .+ ..
T Consensus 132 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~~--~~-~~ 192 (245)
T 1h7e_A 132 AEAAEPSTVK-VVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYSQ--LP-ES 192 (245)
T ss_dssp HHHTCTTSCE-EEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGGG--SC-CC
T ss_pred HHhcCCCCcE-EEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHHh--CC-CC
Confidence 1 112222 23367789999987654311000 001246799999999998876552 22 22
Q ss_pred Cc-cccchHhhh--hCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 322 DF-GSEVIPGAT--SIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 322 ~~-~~dil~~li--~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
++ ..|.++.+. +.|.+++++..+++|.||||++||..++..+.
T Consensus 193 ~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 193 MPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 22 245555543 55889999999999999999999999987553
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-22 Score=195.21 Aligned_cols=214 Identities=16% Similarity=0.215 Sum_probs=135.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ ++.+++.+++.+.+..
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~~~------ 82 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDKGF------ 82 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTSCC------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhcCC------
Confidence 56799999999999999986 9999999987 9999999999999 99999999 7777887776442211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
.+.++. ++.|..|++++++.++..++ +++++++||+.++.+ +.++++.+ . +++.......
T Consensus 83 ---~~~~v~------~~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~~~~~l~~~~-----~-~~~~~~~~~~ 143 (232)
T 2xme_A 83 ---NYKIVR------HDRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQFIEKAVRGE-----G-VIADREPRFV 143 (232)
T ss_dssp ---CEEEEE------CSCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHHHHHHHTTCC-----E-EEEESSCSSS
T ss_pred ---cEEEEE------CCCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHHHHHHHHhCC-----C-cEEEcccccc
Confidence 133432 12233799999999887664 579999999977655 45554421 1 2222111111
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
+..+++.+..+ +|+|..|.+++.. .+..++|+|+|++++|. .+++... ..++
T Consensus 144 ~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~-~g~~-- 195 (232)
T 2xme_A 144 DIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRD-REEI-- 195 (232)
T ss_dssp CTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTT-SSCC--
T ss_pred CCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHh-cChh--
Confidence 23456666665 6899999887642 23678999999999987 4444332 1111
Q ss_pred cchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhh
Q 010006 326 EVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLG 362 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~ 362 (520)
-+..+++ ..++.++.++ ++|.||+||+||..++..
T Consensus 196 -~l~~ll~-~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 196 -PLSEIVK-LARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp -CHHHHHH-HHTCBEEECCSCCEEEEECC---------
T ss_pred -HHHHHHH-cCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 2444554 2356677775 689999999999887653
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=188.71 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=162.2
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
++.|||||||.|+||. +|+|+|++|+ |||+|+++++.++++++|+|++++ +++.+++.+ +.
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~~--------- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-FG--------- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-TT---------
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-cC---------
Confidence 4789999999999995 3999999987 999999999999999999999974 557666654 11
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc-
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK- 245 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~- 245 (520)
+.++... +.+..|++ .+..++..+.....+.+++++||+ +.. .++.++++.+.+.++++++++.+..+.
T Consensus 63 --~~~~~~~-----~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (262)
T 1vic_A 63 --AEVCMTS-----VNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAE 134 (262)
T ss_dssp --CEEEECC-----CSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHH
T ss_pred --CEEEECC-----ccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHH
Confidence 2232210 12335665 566666555422347899999999 444 569999999988888888888776531
Q ss_pred --cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 246 --RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 246 --~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
....+..+..|++|+++.|.+++......... ...... .......+..++|+|+|+++++..+... .+...+.
T Consensus 135 ~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~---~~~~~~-~~~~p~~~~~~~giy~~~~~~l~~~~~~-~~~~~~~ 209 (262)
T 1vic_A 135 ELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFM---NLQDVQ-KVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLEN 209 (262)
T ss_dssp HHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHT---TCSCGG-GCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHH
T ss_pred HhcCCCceEEEECCCCCEeeeecCCCCcCCcccc---cccccc-ccccccceEEEEEEEEeeHHHHHHHHhC-CCCchhh
Confidence 01234445557789999998876321000000 000000 0000012578999999999988765432 1111111
Q ss_pred cccchH--hhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcccC
Q 010006 324 GSEVIP--GATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 366 (520)
Q Consensus 324 ~~dil~--~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~~ 366 (520)
.+.+. .+++.|.+++++..+ ++|.||+|++||..++..+...
T Consensus 210 -~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 210 -LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp -HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred -hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 11122 245458899999998 7999999999999998876543
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=186.65 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=156.3
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhH-HHHHHHHhhhccCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSAS-LNRHLSRAYASNMGG 164 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~ 164 (520)
|+++.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|+++++... +.+.+.+ +.+.
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~~~--- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKK-YISD--- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHH-HCCC---
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHH-hCCC---
Confidence 4568999999999999986 5689999999997 99999999999987 99999999876654 3334433 2211
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc----CcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEE
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVA 238 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~----~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~ 238 (520)
..+.++.. . .+..++++.++..+.+. ..+.+|++.||. +.. ..+.++++.+.+.++. +.
T Consensus 74 ----~~~~~~~~-----~----~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~ 138 (246)
T 3f1c_A 74 ----DRIVVIEG-----G----EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DT 138 (246)
T ss_dssp ----TTEEEEEC-----C----SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EE
T ss_pred ----CCEEEECC-----C----CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EE
Confidence 12333321 1 45788999999888641 257899999999 554 5699999999886644 44
Q ss_pred EEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC
Q 010006 239 ALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP 318 (520)
Q Consensus 239 ~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~ 318 (520)
+.+..+ .++..++++.|..+.+++.. +..-..++|+.+.|.+.++....
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHH
Confidence 455432 23444445556555444321 22235679999988877764211
Q ss_pred CCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCC
Q 010006 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (520)
Q Consensus 319 ~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~ 367 (520)
....+.+|.+..+...|.++.++..+.+|++|+|++||..++..+..+.
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 1122347777777777999999999999999999999999998776544
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=181.06 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=143.1
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccCh-hHHHHHHHHhhhccCCCCcC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (520)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|+++++. +.+.+++.+ +...+ .
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~----~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-YLPLY----K 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-HCGGG----G
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-ccccc----c
Confidence 7899999999999997 6789999999987 9999999999998 5999999999877 556666544 22101 0
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhh--c--CcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEe
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE--H--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALP 241 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~--~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 241 (520)
..+.... .. .|+.++++.++..+.. . ..+.+++++||+ ++. .++.++++.|.+.++ ++++.+
T Consensus 75 -~~~~~~~-----~~----~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~ 142 (236)
T 2vsh_A 75 -ERIIITK-----GG----ADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVE 142 (236)
T ss_dssp -GGEEEEE-----CC----SSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEE
T ss_pred -CceEEEC-----CC----CchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEe
Confidence 0122111 11 5688999999987742 1 236789999999 655 569999999987654 244445
Q ss_pred cCcccCcceEEEEeCCCC-CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 242 MDEKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 242 ~~~~~~~~~g~v~~d~~g-~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
..+ + +..+++| ++..+.+++.. ......|+|+++.+.++++.....
T Consensus 143 ~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~~- 189 (236)
T 2vsh_A 143 AVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSDE- 189 (236)
T ss_dssp CCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCHH-
T ss_pred ccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHhc-
Confidence 432 2 2224567 77766654311 111248899999887776532211
Q ss_pred CCc-cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 321 NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 321 ~~~-~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
..+ ..+.+..+...+.++..+..+++|.||+|++||..++..+
T Consensus 190 g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 190 EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHh
Confidence 111 2344455555578899999888999999999999988754
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=200.79 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=153.6
Q ss_pred EEEEeCceeccc--cHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCC--CCCEEEeeeCCChhhhhhcccccccc
Q 010006 208 FLVLAGDHLYRM--DYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE--EGRIIEFSEKPKGEQLKAMKVDTTIL 283 (520)
Q Consensus 208 ~Lvl~gD~l~~~--dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~--~g~V~~~~ekp~~~~~~~~~~~~~~~ 283 (520)
=|+--+|++|++ +|.++++.|. +++.. .+++..||+..+|+ +++| .|.|||+....
T Consensus 13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~---------- 72 (374)
T 2iu8_A 13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH---------- 72 (374)
T ss_dssp --------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH----------
T ss_pred CcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh----------
Confidence 467789999997 8999999985 24443 33567899888874 4677 89999985421
Q ss_pred cCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccchHhhhhCCceEEEEEecceEEeC--CCHHHHHHhhh
Q 010006 284 GLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI--GTIEAFYNANL 361 (520)
Q Consensus 284 ~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI--~t~~dy~~An~ 361 (520)
..+.++|+|+|+++++.++. +| .++++ ++.+ .+.++|....+|++. .++
T Consensus 73 ----------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~-~~~~a~~~~~~~~~~~i~~~-------- 123 (374)
T 2iu8_A 73 ----------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSE-SPSLVFQKCLELFITPVDSG-------- 123 (374)
T ss_dssp ----------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESS-CHHHHHHHHHTTTSCCCCCS--------
T ss_pred ----------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeC-CHHHHHHHHHHHhccccccc--------
Confidence 02678999999998775221 12 45666 5552 244444444455553 221
Q ss_pred hcccCCCCCCccccCCCccccCCCcCCCceee-ccc------c-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 362 GITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DAD------V-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~------i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
.... ....++++++.|...+.+.|++.+. ++. | .+++|+++|.|++ |.|. ++.|+.++.||++|.|.
T Consensus 124 --~~~i-~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~ 200 (374)
T 2iu8_A 124 --FPGI-HPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQ 200 (374)
T ss_dssp --CCSB-CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred --cCcc-CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEEC
Confidence 0111 2245566777777777777766664 222 2 1244444444444 4444 45555555555555555
Q ss_pred ccEEECCcccccc-----------ccccccccCCCcceeeCCCCEE----------------c-ceEECCCCEECCCcEE
Q 010006 432 DTLLMGADYYETD-----------ADRRFLAAKGSVPIGIGKNSHI----------------K-RAIIDKNARIGDNVKI 483 (520)
Q Consensus 432 ~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~Ig~~~~i----------------~-~~ii~~~~~Ig~~~~i 483 (520)
..+.++.+.|... ....+.||+++ .||++++| . .+.|++|++||++|.|
T Consensus 201 ~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v---~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i 277 (374)
T 2iu8_A 201 PGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDV---EIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMI 277 (374)
T ss_dssp TTCEEEEECSCEEEETTTEEEECCCCCCEEECTTC---EECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CCCEECcCCcccccccCCceeEeeeeccEEECCCC---EECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEE
Confidence 5554443311110 01235556555 45555554 3 3677889999999999
Q ss_pred ecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 484 VNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
.+.+.+.+.+++|++|+|+.+. ++||++++|+++++|
T Consensus 278 ~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 278 VAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp CTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred ccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 9999998888899999888873 678888888888764
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=170.90 Aligned_cols=217 Identities=14% Similarity=0.148 Sum_probs=136.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++|.|||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|+++++.+.+.+ +.+ +..
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-AFP------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-HCT------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-cCC------
Confidence 458999999999999996 579999999987 99999999999985 99999999987766665 543 111
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc----CcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAAL 240 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~----~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~ 240 (520)
..+.++. . ..|++++++.++..+... ..+.+++++||. +++ ..+.++++.+.+.+..+ +++.
T Consensus 73 --~~i~~~~-----~----~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~-~~~~ 140 (231)
T 1vgw_A 73 --QVRVWKN-----G----GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-ILAV 140 (231)
T ss_dssp --TSEEECC-----C----CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EEEE
T ss_pred --CceEEEc-----C----CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeE-EEEe
Confidence 1133321 1 168999999998877431 247899999998 555 45999999887654233 4444
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+..+ . . ..+++|++....++ .. .+...+.|+|+++.|.++++......
T Consensus 141 ~~~~--~--~---~~~~~g~i~~~~~~---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~g 188 (231)
T 1vgw_A 141 PVAD--T--L---KRAESGQISATVDR---SG----------------------LWQAQTPQLFQAGLLHRALAAENLGG 188 (231)
T ss_dssp ECCS--C--E---EEESSSBEEEEECC---TT----------------------EEEEEEEEEEEHHHHHHHHHC----C
T ss_pred eccc--c--e---EEeCCCceEecCCh---HH----------------------heeeeCCcEecHHHHHHHHHHHhhcC
Confidence 4322 1 1 11234655543221 10 12233589999998877765322111
Q ss_pred CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
..+....+...+.++..+..++.|.||||++||..++..+
T Consensus 189 ---~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 189 ---ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp ---CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred ---CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 1222333333367888888778899999999999987654
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=176.86 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=144.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.++ ++++|+|+++++.+++.+++...+
T Consensus 2 ~~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 70 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI------- 70 (228)
T ss_dssp TTCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTS-------
T ss_pred CcceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhC-------
Confidence 567999999999999998 3579999999997 9999999999998 899999999988776665554321
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+. .+.++. .+ .|..++++.++..++. ..+.++++.||. ++. .++..+++.|.+.++ ++++.+..
T Consensus 71 -~~-~v~~~~-----~~----~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~ 136 (228)
T 2yc3_A 71 -DV-DLSFAI-----PG----KERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAK 136 (228)
T ss_dssp -SS-EEEEEC-----CC----SSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred -CC-cEEEEC-----CC----CCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEecc
Confidence 10 133321 11 5788999999877753 246788999997 555 569999999876553 44444432
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ . +..+|+++.+..+.+++. .+.....|+|+++.|.+.++....+. .+
T Consensus 137 ~--~----~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~-~~ 184 (228)
T 2yc3_A 137 A--T----IKEVNSDSLVVKTLDRKT-------------------------LWEMQTPQVIKPELLKKGFELVKSEG-LE 184 (228)
T ss_dssp S--C----CCCBCTTSCBCCCCSCCC-------------------------CEEEEEEEEECHHHHHHHHHHHHHHT-CC
T ss_pred c--e----EEEEcCCCceEEecCccc-------------------------eEEEeCCcEEEHHHHHHHHHHHHhcC-CC
Confidence 2 1 112344445543322111 12223489999887766654211111 22
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
..+.+..+.+.+.++..+..+..|.+|+|++||..++..+.
T Consensus 185 ~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 185 VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp CCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred cccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 35666666666888876666668999999999999877553
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=170.88 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=151.4
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhH-HHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSAS-LNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~-i~~~l~~~~~~~~~~~~ 166 (520)
+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++..+ +.+++..
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~---------- 67 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGG---------- 67 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCB----------
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhcc----------
Confidence 5899999999999998 4689999999987 99999999999988 99999999877543 4433310
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
. .+.++.. . .+.+++++.++..++ ..+.++++.||+ +.+ .++.++++.+. .+.++++.+.+..+
T Consensus 68 -~-~v~~~~~-----~----~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d 133 (223)
T 2xwl_A 68 -E-DSVIVSG-----G----VDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPAD 133 (223)
T ss_dssp -T-TEEEEEC-----C----SSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSS
T ss_pred -C-CeEEEcC-----C----CCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEeccc
Confidence 0 1333321 1 457889999987762 246789999999 555 46999999883 24466666665432
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
+..+ .|++|++..+.|++.. ......|+|+++.+..+++... ..+.
T Consensus 134 --~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~~~~ 179 (223)
T 2xwl_A 134 --TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---AGGV 179 (223)
T ss_dssp --CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---SCCC
T ss_pred --ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---CCCC
Confidence 2222 3667888888765421 1123467899988876664321 2233
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhccc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~ 365 (520)
.+....+...+.++..+..+++|.||||++||..++..+..
T Consensus 180 ~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 180 TDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp CCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 45555555556789999988899999999999999776543
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=168.78 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=146.6
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|+++ .+++.+++.+ +.
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~--~~~i~~~~~~-~~------- 65 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKN-FG------- 65 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEES--CHHHHHHHHH-TT-------
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECC--CHHHHHHHHH-cC-------
Confidence 45789999999999998 8999999987 99999999999988 799999996 3556666544 11
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
++++.... .. ..+..|+.++++.++..+.. ..+.+++++||. +.. .++..+++.+.+.++++++.+.+..+
T Consensus 66 ----~~~~~~~~-~~-~~~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 1ezi_A 66 ----VEVVLRPA-EL-ASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138 (228)
T ss_dssp ----CEEEECCC--------CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS
T ss_pred ----CEEEeCch-HH-cCCCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 12221100 00 00126788999999988741 247899999999 444 56999999887777777777777543
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCCh-hhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKG-EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
. +..+. .+|++|++..|.+.... .... .....+..++|+|+++++.+.+.++ +
T Consensus 139 ~-p~~~~--~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~~~~giy~~~~~~l~~~~~--------~ 192 (228)
T 1ezi_A 139 H-PLKTL--LQINNGEYAPMRHLSDLEQPRQ---------------QLPQAFRPNGAIYINDTASLIANNC--------F 192 (228)
T ss_dssp C-TTSCE--EECC--CEEESSCHHHHTCCGG---------------GSCCEEEEEEEEEEEEHHHHHHHTS--------S
T ss_pred C-cceee--EEcCCCcEeeccccccccCCcc---------------cCchhheeeeEEEEEeHHHHhhCCc--------c
Confidence 1 22332 33777889888652100 0000 0001235678999999987764310 1
Q ss_pred cccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l 364 (520)
.+.++.++..+ .+|.||+|++||..++..+.
T Consensus 193 ----------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 193 ----------FIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp ----------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred ----------cCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 15677777776 58999999999999877653
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-20 Score=176.84 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=139.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
+|.|||||||. |||.+.+...||+|+|++|+ |||+|+++.+..+++ +|+|++. . +++.+++
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~-~-~~i~~~~-------------- 62 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGE-N-PGLVPAP-------------- 62 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESC-C-SSCSSCC--------------
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeC-h-HHHhhhc--------------
Confidence 48999999999 88877666689999999987 999999999999998 8888754 3 3332211
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce--eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.+.+ . +..|++++++.++..++ +.|++++||+ +...++.++++ | +.++++++...+.++ .
T Consensus 63 -~~~~--~--------~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~-~ 124 (232)
T 2dpw_A 63 -ALTL--P--------DRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEA-V 124 (232)
T ss_dssp -SEEE--C--------CCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHH-H
T ss_pred -CeEe--c--------CCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccc-h
Confidence 1333 1 12799999999987764 6899999999 34456999998 6 556777777665321 1
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhh---h--CCC--
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---K--FPG-- 319 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~--~~~-- 319 (520)
...|+.+ .++|+.+.||| .+++|+|+|+++++..+.+. . ...
T Consensus 125 ~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P 173 (232)
T 2dpw_A 125 EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVALRKRP 173 (232)
T ss_dssp HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCH
T ss_pred hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCH
Confidence 1233322 24566666553 35789999999987644321 0 000
Q ss_pred -----------------CCCccccchHhhhh-CCceEEEEEec--ceEEeCCCHHHHH
Q 010006 320 -----------------ANDFGSEVIPGATS-IGMRVQAYLYD--GYWEDIGTIEAFY 357 (520)
Q Consensus 320 -----------------~~~~~~dil~~li~-~~~~v~a~~~~--g~w~dI~t~~dy~ 357 (520)
......++++.+.. .|.++.++.++ +.|.|||||+||.
T Consensus 174 ~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 174 LALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 12233667766553 36789999884 5799999999984
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=162.42 Aligned_cols=222 Identities=12% Similarity=0.152 Sum_probs=144.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++.+.+.+ +.. +.
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~------ 72 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL-AN------ 72 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG-GG------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh-cC------
Confidence 467999999999999998 3579999999987 99999999999987 89999999877655544 322 11
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
...+.++.. + .|..++++.++..+. ..+.+++++||+ +++. .+..+++.+.+.++.. +.+.+..
T Consensus 73 --~~~v~~~~~-----~----~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~ 138 (236)
T 1i52_A 73 --HPQITVVDG-----G----DERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVR 138 (236)
T ss_dssp --CTTEEEEEC-----C----SSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECC
T ss_pred --CCCEEEECC-----C----CCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecc
Confidence 111333321 1 478899999987764 247899999999 5554 4888988876654233 3333432
Q ss_pred cccCcceEEEEeCCC-CCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 244 EKRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
+ . + ...+++ |++....+. . .-+...+.++|+.+.+.++++........
T Consensus 139 ~--~--~--~~~~~~~~~i~~~~~~---~----------------------~i~~~~~p~~f~~~~l~~~~~~~~~~g~~ 187 (236)
T 1i52_A 139 D--T--M--KRAEPGKNAIAHTVDR---N----------------------GLWHALTPQFFPRELLHDCLTRALNEGAT 187 (236)
T ss_dssp S--C--E--EEECTTSSSEEEEECC---T----------------------TCEEEEEEEEEEHHHHHHHHHHHHHTTCC
T ss_pred c--c--E--EEEcCCCCceeeccCh---H----------------------hheeeeCCceecHHHHHHHHHHHHhcCCC
Confidence 1 1 1 112434 455432210 0 01222367788988776666532211111
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccC
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~ 366 (520)
..+....+...+.++..+..++.|.||+||+||..++..+..+
T Consensus 188 -~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 188 -ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp -CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred -cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 2233333333467888888888899999999999998766443
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=158.74 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=136.4
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
+++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+++.+++.+ +.
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~--~~~~i~~~~~~-~g------- 64 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQ-FG------- 64 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TT-------
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEEC--ChHHHHHHHHH-cC-------
Confidence 46899999999999996 4999999997 99999999999988 69999998 45667777654 11
Q ss_pred CCCeEEEee-cccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 010006 167 NEGFVEVLA-AQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 167 ~~~~v~vl~-~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
++++. ......+ ..+..++++.++..+. ..+.+++++||. +.+ .++.++++.|.+.+++.++.+.+.
T Consensus 65 ----~~~~~~~~~~~~~---~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~- 134 (229)
T 1qwj_A 65 ----AQVHRRSSETSKD---SSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR- 134 (229)
T ss_dssp ----CEEEECCGGGSST---TCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE-
T ss_pred ----CEEEeChhhhcCC---CCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeec-
Confidence 22222 1110011 1344588888887663 247899999999 554 569999999988777765554432
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
.++..+.+ .| + +..|.++.......+. .++ .....+..++|+|+|+++.| ++
T Consensus 135 -~~p~~~~v--~~--~-~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~n~giY~~~~~~l---~~--------- 186 (229)
T 1qwj_A 135 -HQFRWSEI--QK--G-VREVTEPLNLNPAKRP---------RRQ-DWDGELYENGSFYFAKRHLI---EM--------- 186 (229)
T ss_dssp -CCCEECCC--CS--S-TTCCCCBSSSBTTBCC---------CTT-TSCCEEEEEEEEEEEEHHHH---HT---------
T ss_pred -cChhHhhc--cc--c-cccccccccccccccc---------CCC-CCCceEEEeeEEEEEEHHHh---cc---------
Confidence 22333322 22 2 1112211100000000 000 00012467999999999877 11
Q ss_pred cccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhhhhccc
Q 010006 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~l~ 365 (520)
.+. .+..+..+..+ ++|.||||++||..++..+..
T Consensus 187 ------~~~-~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 ------GYL-QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ------TCS-SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ------ccc-cCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 111 25566432555 689999999999999876543
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=151.70 Aligned_cols=213 Identities=16% Similarity=0.229 Sum_probs=138.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHH-HHHHHHhhhccCCCC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASL-NRHLSRAYASNMGGY 165 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~~ 165 (520)
.+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++.... .+++. +
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~----~----- 78 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF----H----- 78 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC----C-----
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc----c-----
Confidence 35899999999999998 3479999999987 99999999999988 899999998766443 22211 0
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
.. .+... . .+ .+..++++.++..+++...+.+++++||. +++. .+.++++.+.+.++ .+.+.+..
T Consensus 79 -~~-~~~~~---~--gg----~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~~~~ 145 (234)
T 1vpa_A 79 -EK-VLGIV---E--GG----DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNS 145 (234)
T ss_dssp -TT-EEEEE---E--CC----SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred -CC-ceEEe---C--CC----CcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEecC
Confidence 11 11111 0 00 23778899998877431235788889999 6554 58899998876542 33344432
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ . +...+++| + .+.++.. .+..-..++|+++.+.++++.. .+
T Consensus 146 ~-----~-~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~-----~~ 187 (234)
T 1vpa_A 146 D-----A-LVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENG-----GE 187 (234)
T ss_dssp S-----E-EEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTC-----CC
T ss_pred C-----c-EEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhc-----CC
Confidence 1 1 22234556 5 5543210 0112234588998887776531 11
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
..+....+...+.++..+..++.|.||||++||..++..+.
T Consensus 188 ~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 188 WADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp CSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred CCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 22333333334667887777778999999999999877554
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=164.52 Aligned_cols=334 Identities=15% Similarity=0.128 Sum_probs=195.5
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecC-CccchhHHHHHHhHhC----CCC-eEEEEec-cChhHHHHHHHHhhh
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNS----NIS-KIYVLTQ-FNSASLNRHLSRAYA 159 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~-G~~plI~~~l~~l~~~----gi~-~I~Iv~~-~~~~~i~~~l~~~~~ 159 (520)
..++.+||||||.||||+ ...||+|+||+ |+ |||+|+++.+... |+. .++|+++ +..+.+.++|++...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 357899999999999998 57899999998 76 9999999999876 532 3667666 788899999987322
Q ss_pred ccCCCCcCCCeEEEeecccC---------------CC---CC-CCccCcHHHHHHH-----HHHhhhcCcceEEEEeCce
Q 010006 160 SNMGGYKNEGFVEVLAAQQS---------------PE---NP-NWFQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH 215 (520)
Q Consensus 160 ~~~~~~~~~~~v~vl~~~~~---------------~~---~~-~~~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~ 215 (520)
++ .. +.+ ..|. +. .. ..+.|+++++... ++.+.....++++|++||.
T Consensus 166 fg------~~-i~~--f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn 236 (488)
T 2i5k_A 166 NR------IR-IRS--FNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN 236 (488)
T ss_dssp SS------CE-EEE--ECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB
T ss_pred cC------ce-EEE--EEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc
Confidence 22 11 111 1121 00 01 1257999998733 3444333468999999999
Q ss_pred ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCc-ceEEEEeCCCC--CEEEeeeCCChhhhhhcccccccccCCchhhc
Q 010006 216 LYR-MDYERFIQAHRETDADITVAALPMDEKRAT-AFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAK 291 (520)
Q Consensus 216 l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~-~~g~v~~d~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~ 291 (520)
|.. .|+. ++..|.+.++++++.+.+.++ +. .||.+..+ +| +|+++.+.+....... . ..
T Consensus 237 L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~~-~------------~~ 299 (488)
T 2i5k_A 237 LGATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGTLISY-DGQVRLLEVAQVPKEHIDEF-K------------NI 299 (488)
T ss_dssp SSCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCEEEEE-TTEEEEECGGGSCTTSHHHH-T------------CT
T ss_pred CCCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeEEEEE-CCcEEEEEeccCCHHHHhhc-c------------cc
Confidence 776 5675 668888999999998887543 43 48887764 45 4555556665432210 0 00
Q ss_pred cCCceeeeeEEEEeHHHHHHHHhhhCCCC---------------------CCccccchHhhhhCCceEEEEEec-ceEEe
Q 010006 292 EMPYIASMGIYVISKDVMLNLLRDKFPGA---------------------NDFGSEVIPGATSIGMRVQAYLYD-GYWED 349 (520)
Q Consensus 292 ~~~~l~~~GIyifs~~vl~~ll~~~~~~~---------------------~~~~~dil~~li~~~~~v~a~~~~-g~w~d 349 (520)
..-...++|+|+|+.+.|.++++...... ..|..|+++.+ + +..++.++ ..+..
T Consensus 300 ~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~-~---~~~~~~V~R~~F~P 375 (488)
T 2i5k_A 300 RKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF-D---GAHGVVVPRSRFLP 375 (488)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS-S---SCEEEEECGGGCCB
T ss_pred cccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc-c---CceEEEeccccccc
Confidence 11236699999999999998887521110 11122333322 1 23334442 35778
Q ss_pred CCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceeecc--cccc--eEECC-CcEEeeeEEeeeEECCCCEE
Q 010006 350 IGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA--DVTD--SVIGE-GCVIKNCKIHHSVVGLRSCI 424 (520)
Q Consensus 350 I~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~--~i~~--~~Ig~-g~~I~~~~i~~s~Ig~~~~I 424 (520)
+.+..+++.+...+.... ....+.++.. ..+.|-..+.+. ++.+ .-+.. ...+.. .+=.|--+++.
T Consensus 376 vKn~~~ll~~~~~~~~~~-~g~~~~~~~~-----~e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~~---~~l~v~Gdv~f 446 (488)
T 2i5k_A 376 VKTCSDLLLVKSDLFRLE-HGSLKLDPSR-----FGPNPLIKLGSHFKKVSGFNARIPHIPKIVEL---DHLTITGNVFL 446 (488)
T ss_dssp CCSHHHHHHHTSTTEEEE-TTEEEECTTC-----CSSCCEEEECGGGSSHHHHHHHCSSCCBCTTE---EEEEEESSEEE
T ss_pred ccCCccHHHHHHHHHHHh-cCcEeecCCc-----CCCCCeEEECCcccchhhHHhhcCCCcccccc---ceEEEEeeeEE
Confidence 888887766655432211 1111112211 111222222110 1111 00111 122221 12244445788
Q ss_pred CCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEE
Q 010006 425 SEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477 (520)
Q Consensus 425 g~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 477 (520)
|.++++.+.+++.++ +|. ++.|.+|++++|.+|..|.+|
T Consensus 447 g~~v~l~G~v~i~a~-------------~~~-~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 447 GKDVTLRGTVIIVCS-------------DGH-KIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp CTTCEEEEEEEEECC-------------TTC-CEEECTTCEEEEEEEEEEEEE
T ss_pred cCCcEEEEEEEEEcC-------------CCC-eEEeCCCCEEecceeeccccc
Confidence 888888888776541 122 467888888888877766665
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=148.96 Aligned_cols=188 Identities=14% Similarity=0.187 Sum_probs=127.5
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++|.+||||||.|+||. .||+|+|++|+ |||+|+++++.++++++|+|+++++.+++.+++.+ + +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL-D--------G 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC-T--------T
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc-C--------C
Confidence 35889999999999995 79999999987 99999999999999999999999887777666543 1 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++. ++.|..|++++++.++..+.. ..+.+++++||+ +++ ..+.++++. +.++++++...
T Consensus 69 ---~~~~~------~~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~----- 131 (197)
T 2wee_A 69 ---TDVVV------VEDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY----- 131 (197)
T ss_dssp ---SEEEE------CC----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----
T ss_pred ---CEEEE------CCCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 23332 122347999999999877631 247899999999 555 458888887 34444322110
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
| |+ +. .-++|+++.+..+.. .. .+
T Consensus 132 ----------~--g~-------~~------------------------------~P~~~~~~~l~~l~~--~~--~~--- 155 (197)
T 2wee_A 132 ----------A--DG-------VG------------------------------HPFWFSRTVFGELAR--LH--GD--- 155 (197)
T ss_dssp ----------T--TE-------EE------------------------------EEEEEEGGGHHHHHT--CC--ST---
T ss_pred ----------C--CC-------cC------------------------------CCEEECHHHHHHHHh--CC--CC---
Confidence 1 11 00 012778887775542 22 11
Q ss_pred cchHhhhhC-CceEEEEEec-ceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSI-GMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~-~~~v~a~~~~-g~w~dI~t~~dy~~An~~~ 363 (520)
.-+..+++. +.++..+.++ ++|.||+||+||..++..+
T Consensus 156 ~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 156 KGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp THHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred hhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 123344442 4578877774 6899999999999887543
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-16 Score=149.53 Aligned_cols=217 Identities=19% Similarity=0.187 Sum_probs=152.5
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccCh-hHHHHHHHHhhhccCCCCc
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (520)
++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|+++++. +.+.+++.. .
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~--~------- 73 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH--R------- 73 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG--G-------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC--C-------
Confidence 4799999999999998 3579999999987 99999999999875 899999998765 444444432 1
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhc-CcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+.++.. . .+..++++.++..+.+. ..+.+|++.||. +.+.+ +.++++.+.+ +.++.+.+.++.
T Consensus 74 ----v~~v~g-----g----~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~ 139 (231)
T 3q80_A 74 ----AMIVAG-----G----SNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLS 139 (231)
T ss_dssp ----CEEEEC-----C----SSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCS
T ss_pred ----eEEEcC-----C----CchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEecc
Confidence 223321 1 23468999999877531 246899999999 66654 8899998865 245666666654
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCC
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-AND 322 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~ 322 (520)
+ +.. ..+++|+|....+ .... +.+.+ .+.|+.+.|.+.++....+ ...
T Consensus 140 d--t~~----~~~~~g~v~~~~~---r~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~ 188 (231)
T 3q80_A 140 D--TIK----AVDANGVVLGTPE---RAGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDLPAA 188 (231)
T ss_dssp S--CEE----EECTTSBEEECCC---GGGE---------------------EEECS-CEEEEHHHHHHHHHHHTC-----
T ss_pred C--CEE----EEcCCCcEEEecc---hhhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhcCCC
Confidence 3 222 2466788776532 2211 13333 5899999998887654332 123
Q ss_pred ccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
+.+|....+...|.++..+.-+..++.|+||+|+..++..+
T Consensus 189 ~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 189 EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 34777777766799999888877899999999999887654
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=148.53 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=130.7
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|+++++.+++.+++.+ + +
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL-D--------G 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC-T--------T
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc-C--------C
Confidence 35899999999999997 69999999987 99999999999999999999999877777666543 1 1
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-c-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-Y-RMDYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+. . ..++.++++. +.++++++...
T Consensus 69 ---~~~~~~------~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~----- 131 (199)
T 2waw_A 69 ---LDIVLV------DDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY----- 131 (199)
T ss_dssp ---SEEEEC------CCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----
T ss_pred ---CEEEEC------CCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 233321 12337889999999987731 2478999999994 3 4558888887 44455432211
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
+ ++ + ..-++|+++.+..+.. ... +.
T Consensus 132 ----------~--g~-------~------------------------------~~P~~~~~~~l~~~~~--~~~--~~-- 156 (199)
T 2waw_A 132 ----------A--NG-------I------------------------------GHPFWVSRGVFGDLAE--LHG--DK-- 156 (199)
T ss_dssp ----------T--TE-------E------------------------------EEEEEEEGGGHHHHHT--CSS--TT--
T ss_pred ----------C--Cc-------c------------------------------cCCEEEcHHHHHHHHh--cCC--CH--
Confidence 1 11 0 0113778888876543 211 11
Q ss_pred cchHhhhh-CCceEEEEEec-ceEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATS-IGMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~-~~~~v~a~~~~-g~w~dI~t~~dy~~An~~~ 363 (520)
. +..+++ .+.++..+.++ +.|.||||++||..++..+
T Consensus 157 ~-~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 157 G-VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp C-HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred H-HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 1 333443 24578888874 5899999999999887654
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=153.25 Aligned_cols=129 Identities=23% Similarity=0.336 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++.+.++++++|+|+++++.+++.+++.+.+.+. .
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~-------~ 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDY-------K 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTT-------T
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCC-------C
Confidence 6899999999999997 89999999987 9999999999999999999999998889999988755331 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ec-cccHHHHHHHHHh-----cCCcEEEEEEec
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRE-----TDADITVAALPM 242 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~-----~~a~~tl~~~~~ 242 (520)
.+.++... ..|++++++.++..+ .+.++++.||+ +. ...+.++++.|.+ .+.+..+.+.+.
T Consensus 69 ~~~~~~~~--------~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 69 NIVVIDTS--------GKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp EEEE----------------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred CEEEEECC--------CCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 13333211 267777888877655 47899999999 44 4569999999987 556666666664
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=152.98 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=128.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +.+ +..
T Consensus 24 M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~----------- 81 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG----------- 81 (236)
T ss_dssp CCCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT-----------
T ss_pred CceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc-----------
Confidence 346799999999999984 3 9999999987 999999999 67899999999751 111 111
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
..+.++. .. .|..++++.++..++ .+.+++++||+ +++. .+..+++.+.+.+ ..+.+.+..+
T Consensus 82 -~~v~~~~-----~~----~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~- 145 (236)
T 2px7_A 82 -LGAVFLE-----GG----ATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVPD- 145 (236)
T ss_dssp -CSCEEEE-----CC----SSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECCS-
T ss_pred -CCcEEEe-----CC----CchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecCC-
Confidence 0123321 11 467899999987764 46899999998 5554 4889998887654 3343444321
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
... . .+ +|++..+.++.. . ......++|+++.|.++++....... ...
T Consensus 146 -~~~--~--~~-~G~v~~~~~~~~---~----------------------~~~~~~~~f~~~~l~~~~~~~~~~g~-~~~ 193 (236)
T 2px7_A 146 -TLM--A--PE-GEAYGRVVPREA---F----------------------RLVQTPQGFFTALLREAHAYARRKGL-EAS 193 (236)
T ss_dssp -EEE--E--EC-SSSCEEEECGGG---C----------------------EEECSCEEEEHHHHHHHHHHHHHHTC-CCS
T ss_pred -cEE--E--ec-CCeEEecCChHh---h----------------------ccccCCeEEcHHHHHHHHHHHHhcCC-Cch
Confidence 111 1 24 677776543210 0 11113567898877666543211111 122
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
+....+...+.++..+..++.|.|||||+||..++..+.
T Consensus 194 d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 232 (236)
T 2px7_A 194 DDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALAR 232 (236)
T ss_dssp SHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHH
Confidence 333333334678888888889999999999999887654
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=143.03 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=115.4
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
+|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+++++.+.+.+++. .
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~------------~ 60 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM------------D 60 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT------------T
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc------------C
Confidence 4899999999999998 39999999987 9999999999887 888999877555443322 0
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
+ + ++. ++.|..|++++++.++..+.+ .+.+++++||+ +++. .+.++++.+ +.++++++...
T Consensus 61 ~-~-~v~------~~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~------ 123 (197)
T 3d5n_A 61 Q-I-VIY------NPFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH------ 123 (197)
T ss_dssp S-C-EEE------CTTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE------
T ss_pred C-E-EEE------CCCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe------
Confidence 1 2 221 123447999999999988753 36899999999 5554 488888876 44444432221
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~d 326 (520)
+ |+ +.. + .+|+++.+..+.. ..+. .+
T Consensus 124 ---------~--g~-------~~~-----------------------P-------~~~~~~~l~~l~~--l~g~----~~ 149 (197)
T 3d5n_A 124 ---------K--GE-------RGN-----------------------P-------VLISKSLFNEIEK--LRGD----VG 149 (197)
T ss_dssp ---------T--TE-------ECS-----------------------C-------EEEEHHHHHHHHH--CCTT----CC
T ss_pred ---------C--Cc-------ccC-----------------------C-------EEECHHHHHHHHc--cCCC----cc
Confidence 0 10 000 1 2788888876652 2221 12
Q ss_pred chHhhhhCCceEEEEEec--ceEEeCCCHHHHHHhhhhcc
Q 010006 327 VIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~--g~w~dI~t~~dy~~An~~~l 364 (520)
+-..+.+.+.++..+..+ +.|.||+||+||..++..+.
T Consensus 150 ~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 150 ARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp THHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred HHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 222222224567777765 47899999999988876554
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-16 Score=145.45 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=112.4
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|+++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|+++++.. +++.
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~----------- 70 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL----------- 70 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-----------
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-----------
Confidence 345799999999999998 79999999987 9999999999988 9999999987654 1211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHH-HHHHHHhcCCcEEEEEEecC
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YER-FIQAHRETDADITVAALPMD 243 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~-ll~~h~~~~a~~tl~~~~~~ 243 (520)
+ +.++.. +.+..|++++++.++..++ .+.+++++||+ +.+.+ +.. ++ + .++++.
T Consensus 71 ~---~~~v~~------~~~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v~----- 127 (201)
T 2e8b_A 71 N---APVVLD------EFEESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE----N--FKEPVS----- 127 (201)
T ss_dssp T---CCEEEC------CCSSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH----T--CCSSEE-----
T ss_pred C---ceEEec------CCCCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh----c--CCEEEE-----
Confidence 1 223221 1234799999999998774 47899999999 44544 666 65 1 222110
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
.. +|+ .....|+| |+++++..+.+ ........
T Consensus 128 ----------~~--~g~----------------------------------~~p~~giy-~~~~~~~~l~~-~~~~g~~~ 159 (201)
T 2e8b_A 128 ----------VA--KTE----------------------------------KLHTLVGV-YSKKLLEKIEE-RIKKGDYR 159 (201)
T ss_dssp ----------EE--ESS----------------------------------SEEEEEEE-EEGGGHHHHHH-HHHTTCCC
T ss_pred ----------ec--CCc----------------------------------eeeEEEEE-eChhHHHHHHH-HHHcCCch
Confidence 00 111 13457999 99987764432 11111111
Q ss_pred cccchHhhhhCCceEEEEEec--ceEE--eCCCHHHHHHhhhh
Q 010006 324 GSEVIPGATSIGMRVQAYLYD--GYWE--DIGTIEAFYNANLG 362 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~--g~w~--dI~t~~dy~~An~~ 362 (520)
..+++.. .++..+.++ +.|. |||||+||.+++..
T Consensus 160 ~~~~l~~-----~~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 160 IWALLKD-----VGYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp HHHHHHH-----HCCEEEECCGGGGGGGCCSCCC---------
T ss_pred HHHHHHH-----CCeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 2343433 345566664 5799 99999999887654
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=150.16 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=129.8
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
||++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ +.+.+.+++.+
T Consensus 1 Mmki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~~--------- 66 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTKN--------- 66 (371)
T ss_dssp -CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCSS---------
T ss_pred CCccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhCC---------
Confidence 456899999999999998 3579999999987 999999999998 58999999998 44443322211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
+.++. .. .|..++++.++..++ .+.+++++||. +.+. .+.++++.+.+. +.++.+.+..
T Consensus 67 -----v~~v~-----~g----~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~~ 127 (371)
T 1w55_A 67 -----YEFIE-----GG----DTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVA 127 (371)
T ss_dssp -----SEEEE-----CC----SSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCC
T ss_pred -----CEEEe-----CC----CChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEee
Confidence 22331 11 567899999987664 47899999999 5554 588898887654 3344444432
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ . . .. ..+.+..... +....-+.|+.+.+.++++... .
T Consensus 128 d--~--v---k~--------v~~t~~r~~l----------------------~~~~~P~~f~~~~l~~~~~~~~----~- 165 (371)
T 1w55_A 128 D--T--T---LF--------DNEALQREKI----------------------KLIQTPQISKTKLLKKALDQNL----E- 165 (371)
T ss_dssp S--C--E---EE--------TTEEECGGGC----------------------CEECSCEEEEHHHHHHHTSSCC----C-
T ss_pred c--C--e---ee--------eeeecCccce----------------------eecCCcceecHHHHHHHHHhcc----c-
Confidence 1 1 0 00 0011111100 0001235788887776654311 1
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhh
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An 360 (520)
..+....+...+.++..+..++.|.||+||+||..++
T Consensus 166 ~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 166 FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 2232333333467888888778899999999998887
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=134.85 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=84.0
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|+++++.+.+. + +
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~---~------ 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIYQ----A---S------ 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T---T------
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h---c------
Confidence 567999999999999998 379999999987 999999999985 58999999987754321 1 1
Q ss_pred CCCeEEEeecccCCCCCCCc-cCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHH
Q 010006 167 NEGFVEVLAAQQSPENPNWF-QGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~-~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (520)
+ +.++.. +.+. .|++++++.++..++ .+.+++++||+ +++.+ +..+++.
T Consensus 65 ~---~~~v~~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 65 G---LKVIED------SLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp S---CCEECC------CTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred C---CeEEec------CCCCCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 1 223221 1122 689999999998774 47899999999 55544 7888775
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=143.41 Aligned_cols=212 Identities=14% Similarity=0.174 Sum_probs=140.4
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceec---CCccchhHHHHHHhHh--------CC----CCeEEEEeccChhHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN--------SN----ISKIYVLTQFNSASLNR 152 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv---~G~~plI~~~l~~l~~--------~g----i~~I~Iv~~~~~~~i~~ 152 (520)
.+|.+||||||.||||+ ...||+|+|| .|+ |+|+++++.+.. .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 46999999999999996 5799999999 676 999999999876 36 66666666677899999
Q ss_pred HHHHhhhccCCC----CcCCCeEEEeecc-cC----CCC-CCCccCcHHHHHHHHH-----HhhhcCcceEEEEeCcee-
Q 010006 153 HLSRAYASNMGG----YKNEGFVEVLAAQ-QS----PEN-PNWFQGTADAVRQYLW-----LFEEHNVLEFLVLAGDHL- 216 (520)
Q Consensus 153 ~l~~~~~~~~~~----~~~~~~v~vl~~~-~~----~~~-~~~~~Gt~~al~~~~~-----~l~~~~~~~~Lvl~gD~l- 216 (520)
|+++...+++.. .+....+..+... .- +.. ...+.|+++.+..... .+.....++|+|+++|.+
T Consensus 177 ~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L 256 (505)
T 1jv1_A 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (505)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccc
Confidence 998854443310 0010101111000 00 000 0114789888876542 222234589999999995
Q ss_pred ccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCC-CCCEEEeeeCCChhhhhhcccccccccCCchhhccCCc
Q 010006 217 YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295 (520)
Q Consensus 217 ~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~-~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (520)
...+...++..|.++++++++.+.+.. .+...+|++..++ ..+|+++.|+|...... . ++. ......
T Consensus 257 ~~~~d~~~lg~~~~~~~~~~~~v~~k~-~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~---~-------~~~-g~~~~~ 324 (505)
T 1jv1_A 257 VKVADPRFIGFCIQKGADCGAKVVEKT-NPTEPVGVVCRVDGVYQVVEYSEISLATAQK---R-------SSD-GRLLFN 324 (505)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEETTEEEEECGGGSCHHHHHC---B-------CTT-SSBSSC
T ss_pred cccchHHHHHHHHHcCCCEEEEEEEcc-CCccCcceEEEECCeEEEEEEeeCCHHHhhh---c-------ccc-cccccc
Confidence 777777899999999999998887632 2356789887742 23457777777643211 0 000 011235
Q ss_pred eeeeeEEEEeHHHHHHHHhh
Q 010006 296 IASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 296 l~~~GIyifs~~vl~~ll~~ 315 (520)
..++|+|+|+.++|.++.+.
T Consensus 325 ~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 325 AGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp EEEEEEEEEEHHHHHHHHHT
T ss_pred eeeEEEEEecHHHHHHHHHh
Confidence 78999999999999987653
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=139.27 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=82.4
Q ss_pred ccccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc-------------ccE
Q 010006 372 SFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTL 434 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~-------------~~~ 434 (520)
..+.|.+.|.+.+.+.+++.+. .+.| .++.||++|+|+. +.|. ++.||++|.|+++|.|. ...
T Consensus 23 ~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~ 102 (283)
T 4eqy_A 23 SRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLV 102 (283)
T ss_dssp CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEE
T ss_pred cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEE
Confidence 3455555555555555555543 3334 5688888888887 7777 68888888888888883 223
Q ss_pred EECCcccccccc---------ccccccCCCcceeeCCCCEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 435 LMGADYYETDAD---------RRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 435 i~~~~~~~~~~~---------~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|.+++.....+. ..+.||+++ .|+.+++| ++|+|++++.|+.++.+.+...+++.++++.++.|..+
T Consensus 103 IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~---~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~ 179 (283)
T 4eqy_A 103 IGDRNTIREFTTIHTGTVQDAGVTTLGDDN---WIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY 179 (283)
T ss_dssp ECSSCEECTTEEEECCCTTTTSEEEECSSC---EECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ECCCcccCcceeEccceecCCCceEECCCc---EECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC
Confidence 333322221111 113444444 34444444 34555555555555555544555555555555555555
Q ss_pred eEEEcCCCEeCCCccC
Q 010006 505 IVTIIKDALIPSGTII 520 (520)
Q Consensus 505 ~v~Ig~~~~i~~gtvi 520 (520)
++||++++|++|++|
T Consensus 180 -v~Ig~~~vvg~~s~V 194 (283)
T 4eqy_A 180 -VRIGAHSMLGGASAL 194 (283)
T ss_dssp -CEECTTCEECTTCEE
T ss_pred -eEECCCcEECCCCeE
Confidence 778888888887764
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-14 Score=136.46 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=89.0
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEE-------------cccEE
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII-------------EDTLL 435 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I-------------~~~~i 435 (520)
..++++.+.+..++.+.|++.+. .++.||++|+|++ +.|. ++.||++|.|+++|.| ...+.
T Consensus 6 ~a~I~~~a~ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~ 81 (259)
T 3hsq_A 6 TAIIDPKAELHESVEVGPYSIIE----GNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTV 81 (259)
T ss_dssp TCEECTTCEECTTCEECTTCEEC----SSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEE
T ss_pred CcEECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEE
Confidence 35667777777777777777764 5678888888887 7777 5888888888888888 44444
Q ss_pred ECCc-cccccccccccccCCCc---ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----
Q 010006 436 MGAD-YYETDADRRFLAAKGSV---PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI----- 505 (520)
Q Consensus 436 ~~~~-~~~~~~~~~~~~~~~~~---~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~----- 505 (520)
++++ ... .++.+..+.. .+.||+++.|. ++.|++++.||+++.|.+.+.+.++++++++++|+.+.
T Consensus 82 IG~~~~Ig----~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~ 157 (259)
T 3hsq_A 82 IGDHNIFR----EYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQF 157 (259)
T ss_dssp ECSSCEEC----TTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTT
T ss_pred ECCCcEEC----CCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCC
Confidence 4431 111 1111111110 24566666665 46666666666666666666666666666666666551
Q ss_pred EEEcCCCEeCCCccC
Q 010006 506 VTIIKDALIPSGTII 520 (520)
Q Consensus 506 v~Ig~~~~i~~gtvi 520 (520)
++||++++|++||+|
T Consensus 158 v~Ig~~~~Vg~~s~V 172 (259)
T 3hsq_A 158 CFVGDYSMVAGLAKV 172 (259)
T ss_dssp CEECTTCEECSSEEE
T ss_pred CEECCCCEECCCCEE
Confidence 556777777777653
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=140.42 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=32.3
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCcc
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 519 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtv 519 (520)
++.|++|++||++|.|.+.+.+...+++|++|.|+.+. +.||++++|+++++
T Consensus 239 ~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~ 295 (357)
T 4e79_A 239 LVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM 295 (357)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred CcccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence 34555666666677776666666667777777777662 33555555555543
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=138.79 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=83.1
Q ss_pred EeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCE
Q 010006 348 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSC 423 (520)
Q Consensus 348 ~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~ 423 (520)
+-+.+|...+.....++.........++|.+.+...+.+.+++.+. ++.| .++.||++|+|++ |.|. ++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 5557777655444444333212234556666666555555555554 2333 2355555555544 4442 444444444
Q ss_pred ECCCCEE------------cccEEECCcccc----------ccccccccccCCCcceeeCCCCEE---------------
Q 010006 424 ISEGAII------------EDTLLMGADYYE----------TDADRRFLAAKGSVPIGIGKNSHI--------------- 466 (520)
Q Consensus 424 Ig~~~~I------------~~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~Ig~~~~i--------------- 466 (520)
|+.+++| .....++++.|. .....++.||+++ .||+++.|
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v---~Ig~~~~I~~~~~~~~~Ig~~~~ 230 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRV---EIGACTTIDRGALDDTIIGNGVI 230 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSC---EECTTCEEECCSSSCEEECTTCE
T ss_pred ECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCc---EECCccEeeccccCceEeccceE
Confidence 4333333 333322221110 0001234555554 44444444
Q ss_pred -c-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCcc
Q 010006 467 -K-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 519 (520)
Q Consensus 467 -~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtv 519 (520)
. ++.|+++++||++|.|...+.+....++|++|.|+.+. +.||++++|+++++
T Consensus 231 I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~ 290 (341)
T 3eh0_A 231 IDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGM 290 (341)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCE
T ss_pred ECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCE
Confidence 3 34555566666666666666666666666666666652 45666666666654
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=136.35 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc--------------ccE
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE--------------DTL 434 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~--------------~~~ 434 (520)
..++++.+.|...+.+.|++.+. .++.||++|+|++ +.|. ++.||++|.|++++.|. ...
T Consensus 10 ~a~I~~~a~Ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~ 85 (266)
T 3r0s_A 10 SAVIEEGAQLGDDVVIEAYAYVS----KDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVV 85 (266)
T ss_dssp TCEECTTCEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEE
T ss_pred CCEECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEE
Confidence 35667777777777777777764 5678888888887 7777 68888888888888884 333
Q ss_pred EECCcccccccc---------ccccccCCCcceeeCCCCEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 435 LMGADYYETDAD---------RRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 435 i~~~~~~~~~~~---------~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
|.+++.....+. ..+.||+++ .|+.+++| +++.|++++.|+.++.+.+...+++.++++.++.|..+
T Consensus 86 IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~---~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~ 162 (266)
T 3r0s_A 86 IGKNATIREFATINSGTAKGDGFTRIGDNA---FIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF 162 (266)
T ss_dssp ECTTCEECTTCEEECCCTTTTSEEEECTTC---EECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ECCCCEECCceEecCCcccCCccEEECCCc---eeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCC
Confidence 333322211111 113333333 33444444 24444444444444444444444444445555555555
Q ss_pred eEEEcCCCEeCCCccC
Q 010006 505 IVTIIKDALIPSGTII 520 (520)
Q Consensus 505 ~v~Ig~~~~i~~gtvi 520 (520)
++||++++|++|++|
T Consensus 163 -v~Ig~~a~Vg~~s~V 177 (266)
T 3r0s_A 163 -VKVGEGCMIAGASAL 177 (266)
T ss_dssp -CEECTTCEECSSCBB
T ss_pred -cEECCCCEEccCCeE
Confidence 777888888887764
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=139.23 Aligned_cols=60 Identities=18% Similarity=0.424 Sum_probs=38.6
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCcc
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 519 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtv 519 (520)
||+++.|. ++.|+++++||++|.|.+.+.+...+++|++|+|+.+. ++||++++|+++++
T Consensus 247 IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~ 312 (372)
T 3pmo_A 247 IGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTM 312 (372)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCE
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCE
Confidence 44444443 45566667777777777777777777777777777772 34566666666554
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=135.05 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc------------ccE-EE
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE------------DTL-LM 436 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~------------~~~-i~ 436 (520)
.++++.+.|...+.+.|.+.+. .++.||++|+|++ |.|. ++.||++|.|+++|.|. ..+ +.
T Consensus 8 a~I~~~a~Ig~~~~Ig~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 8 AIISPKAEINKGVEIGEFCVIG----DGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp CEECTTSEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CEECCCCEECCCCEECCCCEEC----CCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 3344455555555555555443 4788899999987 8888 89999999999888884 222 22
Q ss_pred CCccccccccccccccCCCc----ceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----E
Q 010006 437 GADYYETDADRRFLAAKGSV----PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----V 506 (520)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~----~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v 506 (520)
+++.... ++.+..+.. .+.||+++.|. ++.|++++.||++|+|.+...+..+++++++++|+.+. +
T Consensus 84 ~~~~I~~----~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 159 (270)
T 1j2z_A 84 EDNLIRE----FCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV 159 (270)
T ss_dssp SSCEECT----TCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred CCCEECC----CeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCc
Confidence 2222211 112221110 24566666664 55555556666666665555555555555555555441 6
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+||++++|++|++|
T Consensus 160 ~IG~~a~Ig~~s~V 173 (270)
T 1j2z_A 160 RIAKGCMIAGKSAL 173 (270)
T ss_dssp EECTTCEECTTCEE
T ss_pred EeCCceEEecCcEe
Confidence 78888888888763
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=134.42 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc-------------ccEEEC
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE-------------DTLLMG 437 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~-------------~~~i~~ 437 (520)
.+++.+.|...+.+.|.+.+. .++.||++|+|++ +.|. ++.||++|.|+++|.|. +..+.+
T Consensus 15 ~i~~~a~Ig~~v~Ig~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~ 90 (265)
T 4e6u_A 15 IIDPSAVIASDVQIGPYCIIG----PQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGN 90 (265)
T ss_dssp EECTTCEECTTCEECTTCEEC----TTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECS
T ss_pred EECCCCEECCCCEECCCeEEC----CCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECC
Confidence 344444555555555554443 5678888888887 7777 68888888888888882 223333
Q ss_pred Ccccccccc---------ccccccCCCcceeeCCCCEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEE
Q 010006 438 ADYYETDAD---------RRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 507 (520)
Q Consensus 438 ~~~~~~~~~---------~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~ 507 (520)
++.....+. ..+.||+++ .|+.+++| ++++|++++.|+.++.+.+...+++.++++.++.|..+ ++
T Consensus 91 ~~~Ig~~~~I~~g~~~~~~~~~IG~~~---~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~ 166 (265)
T 4e6u_A 91 NNLIREHCSLHRGTVQDNALTKIGSHN---LLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF-CK 166 (265)
T ss_dssp SCEECTTCEEECCCTTTTSEEEECSSC---EECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CE
T ss_pred CeEECCceEECcccccCCCceEEccCc---EEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC-cE
Confidence 222221111 123444444 34444444 34555555555555555555555555555555555566 77
Q ss_pred EcCCCEeCCCccC
Q 010006 508 IIKDALIPSGTII 520 (520)
Q Consensus 508 Ig~~~~i~~gtvi 520 (520)
||++++|++|++|
T Consensus 167 Ig~~~~i~~~svV 179 (265)
T 4e6u_A 167 IDSYSMIGGASLI 179 (265)
T ss_dssp ECTTCEECTTCEE
T ss_pred ECCCCEEcCCCEE
Confidence 8888888888764
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=132.29 Aligned_cols=140 Identities=17% Similarity=0.272 Sum_probs=103.9
Q ss_pred CccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee-----eEECCCCEECCCCEEcccEEE-------C
Q 010006 371 FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH-----SVVGLRSCISEGAIIEDTLLM-------G 437 (520)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~-----s~Ig~~~~Ig~~~~I~~~~i~-------~ 437 (520)
+.+++....+.+.+.+.|++.+. .++.||++|.|++ |.|.. .+||++|.|+++|.|...... .
T Consensus 53 ~~~~~~~~~I~~~~~I~~~a~I~----g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~ 128 (247)
T 1qre_A 53 WNPEPSAPVIDPTAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIE 128 (247)
T ss_dssp TBSSCCCCEECTTCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCG
T ss_pred ccccCCCcEECCCcEECCCCEEe----CCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccc
Confidence 45666777888888888888775 4677788888877 77663 389999999999999654210 0
Q ss_pred Cccccccc-cccccccCCCcceeeCCCCEEcc-eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeC
Q 010006 438 ADYYETDA-DRRFLAAKGSVPIGIGKNSHIKR-AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 515 (520)
Q Consensus 438 ~~~~~~~~-~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~ 515 (520)
..+++... ...+.||+++ .||+++.|.+ ++||++|.||.+++|.+ ..+++.+.++.++.| .+ +.|+++++|+
T Consensus 129 ~~~~~~~~~~~~v~IG~~v---~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~~-~~I~~~~~v~ 202 (247)
T 1qre_A 129 DNIVEVDGKEYAVYIGNNV---SLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IG-VTIPDGRYIP 202 (247)
T ss_dssp GGCEEETTEEESEEECTTC---EECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ES-CEECTTBEEC
T ss_pred cceeeccCccCceEECCCC---EECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-CC-eEeCCCCEEC
Confidence 11111111 1357888888 8999999997 99999999999999987 777777777777777 66 6788888888
Q ss_pred CCccC
Q 010006 516 SGTII 520 (520)
Q Consensus 516 ~gtvi 520 (520)
+|++|
T Consensus 203 ~g~vv 207 (247)
T 1qre_A 203 AGMVV 207 (247)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 88764
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=123.70 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=83.9
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+. .+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc--------C--
Confidence 689999999999997 69999999987 9999999999987 89999864 33332 333211 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEE
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~t 236 (520)
+.++.. +.+..|..++++.++..+ . +.+ +++||+ +++.+ +..+++.+.+.+.+++
T Consensus 60 -~~~v~d------~~~~~G~~~si~~gl~~~-~---~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v 116 (208)
T 3ngw_A 60 -AEFIWD------LHKGVGSIAGIHAALRHF-G---SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208)
T ss_dssp -SCEECC------TTCCCSHHHHHHHHHHHH-S---SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred -CeEEec------CCCCCChHHHHHHHHHHc-C---CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEE
Confidence 223321 112368889999999777 2 678 999999 66655 8888888776566654
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-14 Score=152.74 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=81.3
Q ss_pred CCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeC
Q 010006 383 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG 461 (520)
Q Consensus 383 ~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig 461 (520)
.+.+.|.+.+. .++.||++|.|++ |.|.+++||++|.|+++|+|.++++.++ +.||
T Consensus 279 ~a~I~p~a~i~----g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig 335 (496)
T 3c8v_A 279 GASVSGYAVIK----GDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTA 335 (496)
T ss_dssp TCEECTTSEEE----SSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEEC
T ss_pred CcEECCCcEEe----CCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEEC
Confidence 34444444443 5788999999998 8888999999999999999998888775 5899
Q ss_pred CCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEc--CCCEeCCCc
Q 010006 462 KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII--KDALIPSGT 518 (520)
Q Consensus 462 ~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig--~~~~i~~gt 518 (520)
+++.|.+++||++|.||.+++|.++. ...+++|++|+|+.+ ++|. +++.||+|+
T Consensus 336 ~~a~I~gv~IGd~v~IG~~a~I~~~~--~~~v~IG~~a~IGag-svV~~~~~~~I~~~s 391 (496)
T 3c8v_A 336 HGGKIINAHLGDMIFTGFNSFLQGSE--SSPLKIGDGCVVMPH-TIIDLEEPLEIPAGH 391 (496)
T ss_dssp TTCEEESEEEEETCEECTTCEEECCS--SSCEEECTTCEECTT-CEEECSSCEEECSSE
T ss_pred CCcEEcCceECCCcEECCCCEEeCCC--CcceEECCCCEECCC-CEEecCCCcEeCCCC
Confidence 99999999999999999999998761 122345555555555 4444 444444444
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=137.90 Aligned_cols=209 Identities=17% Similarity=0.146 Sum_probs=138.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecC-CccchhHHHHHHhHhCCCC-----eEEEEec-cChhHHHHHHH-Hhhh
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNSNIS-----KIYVLTQ-FNSASLNRHLS-RAYA 159 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~-G~~plI~~~l~~l~~~gi~-----~I~Iv~~-~~~~~i~~~l~-~~~~ 159 (520)
.++.+||||||.||||+ ...||+|+||+ |+ |+|+++++++...|.. .++|.+. +..+.+.+||+ +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 47999999999999999 67999999999 76 9999999999887533 4555554 55888999998 5433
Q ss_pred ccCC---CC-cCCCeEEEeeccc-C-------CCCCCCccCcHHHHHHH-----HHHhhhcCcceEEEEeCceecc-ccH
Q 010006 160 SNMG---GY-KNEGFVEVLAAQQ-S-------PENPNWFQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDY 221 (520)
Q Consensus 160 ~~~~---~~-~~~~~v~vl~~~~-~-------~~~~~~~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl 221 (520)
|++. .. |..+.+..+.... . +.....+.|+++.+... ++.+.....++++|.++|.+.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 4331 01 2212122211110 0 00001246999988755 3333333468999999999874 577
Q ss_pred HHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeC------CCCC---------EEEeeeCCChhhhhhcccccccccCC
Q 010006 222 ERFIQAHRETDADITVAALPMDEKRATAFGLMKID------EEGR---------IIEFSEKPKGEQLKAMKVDTTILGLD 286 (520)
Q Consensus 222 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d------~~g~---------V~~~~ekp~~~~~~~~~~~~~~~~~~ 286 (520)
.++..|.++++++++.+.+... ....+|++..+ .+|+ +.++.+-|....... +
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~-~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~----~------ 297 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTE-SDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF----Q------ 297 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCT-TCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH----H------
T ss_pred -HHHHHHHhcCCcEEEEEEEecC-CccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc----c------
Confidence 8999999999999999887654 23468887762 3566 555556555432210 0
Q ss_pred chhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 287 DERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
....-.+.++...+|+-+.+.++++.
T Consensus 298 ---g~~~f~~~Ninn~~~~l~~l~~~~~~ 323 (505)
T 2oeg_A 298 ---DINKYSFFNTNNLWIRLPVLLETMQE 323 (505)
T ss_dssp ---CTTTTCEEEEEEEEEEHHHHHHHHHH
T ss_pred ---CccccCeeEEEEEEEEHHHHHHHHhh
Confidence 00111246889999999999888775
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-13 Score=129.84 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=72.4
Q ss_pred cCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc------------cEEEC-Cc
Q 010006 375 DRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMG-AD 439 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~------------~~i~~-~~ 439 (520)
++.+.+...+.+.|++.+. .++.||++|+|++ |.|. ++.||++|.|+++|.|.. .+.++ ++
T Consensus 15 ~~~a~Ig~~v~I~~~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~ 90 (262)
T 2qia_A 15 EEGASIGANAHIGPFCIVG----PHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN 90 (262)
T ss_dssp CTTCEECTTCEECTTCEEC----TTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSC
T ss_pred CCCCEECCCCEECCCCEEC----CCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCc
Confidence 3334444444444444432 4677888888877 7777 788888888888888853 22222 21
Q ss_pred cccccccccccccCCC----cceeeCCCCEEc-ceEECCCCEECCCcEEecCC------CcCCcccccCCeEEccCeEEE
Q 010006 440 YYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSD------SVQEAARETDGYFIKSGIVTI 508 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~------~v~~~~~~~~~~~I~~~~v~I 508 (520)
.... ++.+..+. -++.||+++.|. ++.|.+++.||++++|.+.. .+++.+.++.++.|..+ ++|
T Consensus 91 ~Ig~----~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~-v~I 165 (262)
T 2qia_A 91 RIRE----SVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF-CII 165 (262)
T ss_dssp EECT----TCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEE
T ss_pred eeCC----CCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC-CEE
Confidence 1111 11111110 013444444443 34444444444444444444 44444444555555555 778
Q ss_pred cCCCEeCCCccC
Q 010006 509 IKDALIPSGTII 520 (520)
Q Consensus 509 g~~~~i~~gtvi 520 (520)
|++++|++|++|
T Consensus 166 g~~~~ig~~s~V 177 (262)
T 2qia_A 166 GAHVMVGGCSGV 177 (262)
T ss_dssp CTTCEECSSCEE
T ss_pred CCCCEEccCCEE
Confidence 888888888764
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-13 Score=130.09 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=21.4
Q ss_pred CcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 488 SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 488 ~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+++.+++|.++.|..+ ++||++++|++||+|
T Consensus 172 ~Ig~~~~IG~~~~I~~g-~~IG~~~~IgagsvV 203 (273)
T 3fs8_A 172 TIELFAVIAARSVVLPG-IHINEDALVGAGAVV 203 (273)
T ss_dssp EECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCeEEcCCCEEcCC-CEECCCCEECCCCEE
Confidence 34444555555556666 778888888888874
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=125.59 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=84.7
Q ss_pred CCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCcccc-ccccccc
Q 010006 376 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYE-TDADRRF 449 (520)
Q Consensus 376 ~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~-~~~~~~~ 449 (520)
++..|.+.+.+.+.+.+. .++.||++|+|++ |.|. +..||++|.|+++|.|.+.......... ......+
T Consensus 11 ~~v~I~~~a~I~~~a~I~----g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~ 86 (194)
T 3tv0_A 11 KSVKIAPGAVVCVESEIR----GDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 86 (194)
T ss_dssp -CEEECTTCEECTTSEEE----SSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred CCCEECCCCEEcCCCEEe----CCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence 344555666666666654 5788888888887 7775 3689999999999999765443322111 1122556
Q ss_pred cccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 450 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.+|+++ .|+.++.+.++.|++++.||.+++|... +.+|++|+|++| ++|.+++.||++++
T Consensus 87 ~Ig~~~---~i~~~~~i~~~~Ig~~~~Ig~~~~I~~g------v~IG~~~~Igag-svV~~~~~Ip~~sv 146 (194)
T 3tv0_A 87 IIGTNN---VFEVGCYSQAMKMGDNNVIESKAYVGRN------VILTSGCIIGAC-CNLNTFEVIPENTV 146 (194)
T ss_dssp EECSSC---EECTTCEECCSEECSSCEECTTCEECTT------EEECSSCEECTT-CEECCCEEECTTEE
T ss_pred EECCcc---eEecceeEeeeeecccceecceeeECCe------EEECCCCEECCC-CEECCCcEECCCCE
Confidence 777776 6788888888888888888888887654 455556666666 55555555555554
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=122.51 Aligned_cols=124 Identities=15% Similarity=0.283 Sum_probs=86.9
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCcccccccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDAD 446 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~ 446 (520)
.+.++...+...+.+.|++.+. .++.||++|.|+. |.|. +..||++|.|+++|.|......+
T Consensus 28 ~~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g--------- 94 (191)
T 3ixc_A 28 PYAGVSPSVDSTAFIAGNARII----GDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHG--------- 94 (191)
T ss_dssp CBTTBCCEECTTSEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----C---------
T ss_pred cccCCCCEECCCCEECCCCEEe----CCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcC---------
Confidence 4566677777788888887775 4677888888877 7775 34899999999999997321100
Q ss_pred ccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 447 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 447 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.||+++ .||+++.|.+++|+++|.||.+++|.+.. +++++++|+++ ++|.++..|+++++
T Consensus 95 -~~~Ig~~~---~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~------~Ig~~~~Ig~g-svV~~~~~i~~~~~ 156 (191)
T 3ixc_A 95 -DTVIGKFV---TIGHSCILHACTLGNNAFVGMGSIVMDRA------VMEEGSMLAAG-SLLTRGKIVKSGEL 156 (191)
T ss_dssp -CEEECTTC---EECTTCEECSCEECTTCEECTTCEECTTC------EECTTCEECTT-CEECTTCEECTTEE
T ss_pred -CeEECCCC---EECCCCEEECCEECCCCEECCCCEEeCCe------EECCCCEECCC-CEECCCcCcCCCeE
Confidence 22333344 79999999999999999999999987644 45556666666 55566666666554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-14 Score=135.56 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=19.0
Q ss_pred CceEEEEEecce----EEeCCCHHHHHHhhhhcc
Q 010006 335 GMRVQAYLYDGY----WEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 335 ~~~v~a~~~~g~----w~dI~t~~dy~~An~~~l 364 (520)
..+++++...++ |.|+++ |++++..++
T Consensus 38 ~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l 68 (240)
T 3r8y_A 38 TVQAFVNKKSGVLFGEWSEIKT---ILDENSKYI 68 (240)
T ss_dssp TSEEEECSSEEEEEEEHHHHHH---HHHHTTTTE
T ss_pred cceEEEcCCCeEEEccHHHHHH---HHHhcccee
Confidence 567777766666 888877 777777654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=135.38 Aligned_cols=170 Identities=13% Similarity=0.149 Sum_probs=87.4
Q ss_pred EEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe---------
Q 010006 347 WEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH--------- 414 (520)
Q Consensus 347 w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~--------- 414 (520)
+.-+.+|...+.....++.........++|.+.+...+.+.+++.+. ++.| .++.||++|+|+. |.|.
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~ 174 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGG 174 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCc
Confidence 45566776655444444333212234556666665555555555443 2222 2344444444433 3333
Q ss_pred ----eeEECCCCEECCCCEEcccEEECCccccc----------cccccccccCCCcceeeCCCCEE-----cceEECCCC
Q 010006 415 ----HSVVGLRSCISEGAIIEDTLLMGADYYET----------DADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKNA 475 (520)
Q Consensus 415 ----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~~ 475 (520)
++.|+.+|.||++|.|.....++++-|.. .....+.||+++ .||.+++| .+++|++++
T Consensus 175 ~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v---~IGa~~~I~~g~~~~t~IG~~~ 251 (372)
T 3pmo_A 175 WLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV---EIGANTTIDRGALSDTLIGNGV 251 (372)
T ss_dssp EECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSC---EECTTCEEECCSSSCEEECTTC
T ss_pred ccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCC---EECCCcEEccCcccceEECCCC
Confidence 33333333344444443333333221100 001256666666 56777666 456666666
Q ss_pred EECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 476 RIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 476 ~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|+.++.|.....+++++.++.++.|..+ ++||+++.|+++++|
T Consensus 252 ~I~~~v~I~~~v~IG~~~~I~~~~~I~~~-v~IG~~~~Ig~~a~V 295 (372)
T 3pmo_A 252 KLDNQIMIAHNVQIGDHTAMAACVGISGS-AKIGRHCMLAGGVGL 295 (372)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCC-CEECCCeEEeCCCEE
Confidence 66666666655555565555555656656 888888888888764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=133.21 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred eEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCC
Q 010006 346 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLR 421 (520)
Q Consensus 346 ~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~ 421 (520)
.|.-+++|...+.....++..... ...++|.+.|.+++.+.+++.+. ++.| .++.||++|+|++ |.|. ++.||++
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~-~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~ 156 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKIS-STGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKD 156 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCC-CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSS
T ss_pred cEEEECCHHHHHHHHHHHhccccc-cCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 466678887655444444433212 14455555555555554444443 2222 2344444444443 4443 3444444
Q ss_pred CEECCCCEE------------cccEEECCcccccc----------ccccccccCCCcceeeCCCCEE-----cceEECCC
Q 010006 422 SCISEGAII------------EDTLLMGADYYETD----------ADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKN 474 (520)
Q Consensus 422 ~~Ig~~~~I------------~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~ 474 (520)
|.|+++|+| ....+++++-|... ....+.||+++ .||.+++| .+++|+++
T Consensus 157 ~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v---~IG~~~~I~~g~~~~t~Ig~~ 233 (357)
T 4e79_A 157 CFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDV---RIGSNCSIDRGALDNTILEDG 233 (357)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTC---EECTTCEECCCSSSCEEECTT
T ss_pred CEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCc---EEccccEEeccccCCccccCC
Confidence 444433333 33333332211000 01245555555 56666655 34555555
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.|+.++.|...+.+++++.++.++.|..+ ++||+++.|+++++|
T Consensus 234 ~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~-v~IG~~~~Ig~~s~V 278 (357)
T 4e79_A 234 VIIDNLVQIAHNVHIGSNTAIAAKCGIAGS-TKIGKNCILAGACGV 278 (357)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred cccCCCcccCCCeEECCCCEECCCCEECCC-cEECCCCEECcCCEE
Confidence 555555555555555555555555555555 888888888888764
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=129.59 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=45.9
Q ss_pred eeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 458 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 458 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
+.||+++.|. ++.|++++.||++|.+.+...+..+.+++++++|+.+. ++||++++|++|++|
T Consensus 133 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 133 TVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 4566666664 67777777788887777777777777777777777662 668888888888764
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=119.37 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=88.4
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCccccccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADR 447 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~ 447 (520)
+.++...+.+.+.+.|++.+. .++.||++|.|+. +.|.. +.||++|.|+++|.|.... ..
T Consensus 6 ~~~~~~~i~~~~~I~~~a~i~----g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~-----------~~ 70 (173)
T 1v3w_A 6 INGKKPRIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSH-----------GY 70 (173)
T ss_dssp BTTBCCEECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBT-----------TB
T ss_pred cCCCCCEECCCCEECCCCEEe----CCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecC-----------CC
Confidence 344555677777788887775 4677888888887 77763 8999999999999997530 01
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
++.+|+++ .|++++.|.+++|++++.||.++.|.+...+++.+.++.++.|..+ +.|++++++
T Consensus 71 ~~~Ig~~~---~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~-~~i~~~~~v 133 (173)
T 1v3w_A 71 PTEIGEYV---TIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPN-KEIPDYSLV 133 (173)
T ss_dssp CEEECSSC---EECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTT-CEECTTEEE
T ss_pred CeEECCCC---EECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCcEE
Confidence 23334444 7999999999999999999999999876666665555555555555 455555555
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=118.04 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=83.1
Q ss_pred ccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEee----eEECCCCEECCCCEEcccEEECCcccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRR 448 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~ 448 (520)
.++...+.+.+.+.|++.+. .++.||++|.|+. +.|.. +.||++|.|+++|.|.... ..+
T Consensus 9 ~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~-----------~~~ 73 (173)
T 1xhd_A 9 KEKKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP-----------QYP 73 (173)
T ss_dssp TTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT-----------TCC
T ss_pred CCCCCEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCC-----------CCC
Confidence 44556677777777777765 5678888888887 77764 7999999999999997310 012
Q ss_pred ccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 449 FLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
+.||+++ .|++++.|.+++|+++|.||.+++|.+...+++.+.++.++.+..+ ..|++++++
T Consensus 74 ~~Ig~~~---~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~-~~i~~~~vv 135 (173)
T 1xhd_A 74 LILEDDV---TVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQG-KKIPPNTLA 135 (173)
T ss_dssp EEECTTC---EECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTEEE
T ss_pred eEECCCC---EECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCC-cEeCCCCEE
Confidence 3333344 7999999999999999999999998765555444444444444433 334444443
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=125.79 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=20.8
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
||+++.|. ++.+..+++||++|.|...+.+....+++++++|+.+
T Consensus 124 IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~ 169 (259)
T 3hsq_A 124 LGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGL 169 (259)
T ss_dssp ECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSS
T ss_pred ECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCC
Confidence 34444333 3444444444444444444444444455555555555
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=130.96 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=25.5
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
||+++.|. ++.|..+++||++|+|...+.+..+..++++++|+.+
T Consensus 243 IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~ 288 (341)
T 3eh0_A 243 IGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGM 288 (341)
T ss_dssp ECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTT
T ss_pred ECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeC
Confidence 33333333 3444445556666666666666666666666666666
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=120.58 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=33.9
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEec---------------CCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVN---------------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~---------------~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|++++.|. ++.|++++.||+++.+.+ ...+++.+++|.++.|..+ ++||++++|++|++|
T Consensus 59 ~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g-~~Ig~~~~IgagsvV 135 (192)
T 3mqg_A 59 KIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCG-ATIGRYAFVGAGAVV 135 (192)
T ss_dssp EECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCC-CEECCCCEEcCCCEE
Confidence 455555553 555666666666555543 1233444455555555555 666666666666653
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-12 Score=125.00 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=70.6
Q ss_pred ccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCc----ccccccc-
Q 010006 374 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGAD----YYETDAD- 446 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~----~~~~~~~- 446 (520)
+.|.+.|.+.+.+.+++.+. ..++|++++.|++ +.|. +++|..++.||++|.|.....++.. .|. ...
T Consensus 7 I~p~a~I~~~a~Ig~~v~I~----~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~-g~~~ 81 (266)
T 3r0s_A 7 IHPSAVIEEGAQLGDDVVIE----AYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYK-EEQK 81 (266)
T ss_dssp BCTTCEECTTCEECTTCEEC----TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC-----
T ss_pred cCCCCEECCCCEECCCCEEC----CCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCcccccc-CCcC
Confidence 44544444444444433332 4566666666666 6665 5666667777777777666666311 010 011
Q ss_pred ccccccCCCcceeeCCCCEEcc--------eEECCC------------CEECCCcEEecCCCcCCcccccCCeEEccCeE
Q 010006 447 RRFLAAKGSVPIGIGKNSHIKR--------AIIDKN------------ARIGDNVKIVNSDSVQEAARETDGYFIKSGIV 506 (520)
Q Consensus 447 ~~~~~~~~~~~~~Ig~~~~i~~--------~ii~~~------------~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v 506 (520)
..+.||+++ .|+++++|.. ++||++ +.||++|.|.+...+.++.++|++++|+.+ +
T Consensus 82 ~~v~IG~~~---~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-a 157 (266)
T 3r0s_A 82 SGVVIGKNA---TIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGL-T 157 (266)
T ss_dssp CEEEECTTC---EECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-C
T ss_pred ceEEECCCC---EECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccC-C
Confidence 255666665 4555555542 444444 444444444444444444555555555555 5
Q ss_pred EEcCCCEeCCCcc
Q 010006 507 TIIKDALIPSGTI 519 (520)
Q Consensus 507 ~Ig~~~~i~~gtv 519 (520)
+|.+++.||++++
T Consensus 158 ~V~~~v~Ig~~a~ 170 (266)
T 3r0s_A 158 PIHQFVKVGEGCM 170 (266)
T ss_dssp EECTTCEECTTCE
T ss_pred EECCCcEECCCCE
Confidence 5555555555554
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=117.65 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=91.2
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-e---eEECCCCEECCCCEEcccEEECCcccccccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-H---SVVGLRSCISEGAIIEDTLLMGADYYETDAD 446 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~---s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~ 446 (520)
.+.+....+...+.+.|++.+. .++.||++|.|++ +.|. + +.||++|.|+++|.|.... ........
T Consensus 10 ~~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~----~~~~~~~~ 81 (187)
T 3r3r_A 10 PYKNLFPGIGQRVMIDTSSVVI----GDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTH----KSSSNPHG 81 (187)
T ss_dssp CBTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBC----CBTTBC-C
T ss_pred hhcccCcccCCCeEECCCCEEE----CceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCC----ccccCCCC
Confidence 3445566777778888888775 4678888888887 7776 3 4999999999999995321 11111122
Q ss_pred ccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 447 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 447 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
..+.||+++ .||+++.|.+++||++|.||.+++|... ..++++++|+.+ ++|.++..|+++++
T Consensus 82 ~~~~Ig~~~---~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~------~~Ig~~~~Ig~~-s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 82 NPLIIGEDV---TVGHKVMLHGCTIGNRVLVGMGSIVLDG------AIIEDDVMIGAG-SLVPQHKRLESGYL 144 (187)
T ss_dssp BCEEECSSC---EECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTT-CEECTTCEECTTEE
T ss_pred CCeEECCCC---EECCCCEEeCcEECCCCEECCCCEECCC------CEECCCCEECCC-CEECCCcCcCCCcE
Confidence 456666777 7999999999999999999999999754 445556666666 55666666666654
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=117.65 Aligned_cols=129 Identities=17% Similarity=0.289 Sum_probs=90.9
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCccccccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADR 447 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~ 447 (520)
+.+....+...+.+.|++.+. .++.||++|.|++ +.|. ++.||++|.|+++|.|..+..... .....
T Consensus 15 ~~~~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~----~~~~~ 86 (189)
T 3r1w_A 15 YQGISPKLGERVFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDY----NPGGY 86 (189)
T ss_dssp BTTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSS----STTCB
T ss_pred ccCcCCEECCCcEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccC----CCCCC
Confidence 344556677778888888775 4678888888887 7775 359999999999999977522111 11224
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.+.||+++ .||+++.|.+++||++|.||.+++|.+.. +++++++|+.+ ++|.++..|+++++
T Consensus 87 ~~~Ig~~~---~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v------~Ig~~~~Ig~~-s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 87 PLIIGDDV---TIGHQAMLHGCTIGNRVLIGMKSMIMDGA------IVEDEVIVAAG-ATVSPGKVLESGFV 148 (189)
T ss_dssp CEEECSSE---EECTTCEEESCEECSSEEECTTCEECTTC------EECSSCEECTT-CEECTTCEECTTEE
T ss_pred CeEECCCC---EECCCCEEeCcEECCCcEECCCCEEcCCC------EECCCCEEccC-CEECCCCEeCCCCE
Confidence 55666666 79999999999999999999999997544 45555666666 55555555555554
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=116.31 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=44.1
Q ss_pred cceEEC--CCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCC
Q 010006 398 TDSVIG--EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 474 (520)
Q Consensus 398 ~~~~Ig--~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 474 (520)
.++.|| ++|+|++ +++|+.+++||++|.|...+.++++ +.||++++|. +++|..+
T Consensus 86 ~~~~Ig~~~g~~I~~----~~~I~~~~~IG~~~~I~~~~~i~~~------------------~~Ig~~~~I~~~~~i~~~ 143 (194)
T 3bfp_A 86 PSAIVEENAGILIMP----YVVINAKAKIEKGVILNTSSVIEHE------------------CVIGEFSHVSVGAKCAGN 143 (194)
T ss_dssp TTCEECTTSCCEECT----TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTT
T ss_pred CCceeCCCCCcEEcC----CCEECCCCEECCCCEECCCCEEcCC------------------CEECCCCEECCCCEECCC
Confidence 345677 7777775 4555566666666666555544431 2455555554 4555555
Q ss_pred CEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 475 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 475 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
++||++|.|..++.+.+...+++++.|++|
T Consensus 144 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igag 173 (194)
T 3bfp_A 144 VKIGKNCFLGINSCVLPNLSLADDSILGGG 173 (194)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 555555555443333333444445555555
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=125.88 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=70.6
Q ss_pred cCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc----cccccc
Q 010006 375 DRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY----YETDAD 446 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~----~~~~~~ 446 (520)
.+...|.+++.+.|++++. ++.| ..++|++++.|+. |.|. +++|+.++.||++|.|.+.+.++... | ....
T Consensus 20 ~~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~-~g~~ 98 (283)
T 4eqy_A 20 GSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKY-KDEP 98 (283)
T ss_dssp ---CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTC-CCCC
T ss_pred CCCcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccc-cCCC
Confidence 3444566666666666654 2333 2344444444444 4444 45555555566666665555553210 0 0111
Q ss_pred ccccccCCCcceeeCCCCEEcc--------eEEC------------CCCEECCCcEEecCCCcCCcccccCCeEEccCeE
Q 010006 447 RRFLAAKGSVPIGIGKNSHIKR--------AIID------------KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIV 506 (520)
Q Consensus 447 ~~~~~~~~~~~~~Ig~~~~i~~--------~ii~------------~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v 506 (520)
..+.||+++ .|+++++|.. ++|| +++.||++|.|.+.+.+.++.++|++++|+.+ +
T Consensus 99 ~~v~IG~~~---~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~-a 174 (283)
T 4eqy_A 99 TRLVIGDRN---TIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGM-S 174 (283)
T ss_dssp CEEEECSSC---EECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTT-C
T ss_pred ceEEECCCc---ccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecC-C
Confidence 355666665 4555555542 4444 44445555555555555555555555555555 5
Q ss_pred EEcCCCEeCCCccC
Q 010006 507 TIIKDALIPSGTII 520 (520)
Q Consensus 507 ~Ig~~~~i~~gtvi 520 (520)
+|.+++.||++++|
T Consensus 175 ~V~~~v~Ig~~~vv 188 (283)
T 4eqy_A 175 GVHQYVRIGAHSML 188 (283)
T ss_dssp EECTTCEECTTCEE
T ss_pred EEcCCeEECCCcEE
Confidence 55566666665543
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=124.59 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccc---cccccc
Q 010006 376 RSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYE---TDADRR 448 (520)
Q Consensus 376 ~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~---~~~~~~ 448 (520)
+.+.|.+.+.+.+++++. ++.| ..++|++++.|++ |.|. +++|+.++.||++|.|.+.+.++.+... .....+
T Consensus 4 ~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~ 83 (262)
T 2qia_A 4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR 83 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCE
T ss_pred CCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccc
Confidence 344444444455555443 2223 3455555555555 5554 5666666666666666666555432110 111235
Q ss_pred ccccCCCcceeeCCCCEEcc--------eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 449 FLAAKGSVPIGIGKNSHIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~~--------~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+.+|+++ .|+++++|.. ++||+++.|+.++.|.....+++.+.++.++.+..+ ++||+++.|+++++
T Consensus 84 ~~IG~~~---~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~-v~Ig~~~~Ig~~~~ 158 (262)
T 2qia_A 84 VEIGDRN---RIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGH-VSVDDFAIIGGMTA 158 (262)
T ss_dssp EEECSSC---EECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred eEECCCc---eeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCC-cEECCCcEEccCCE
Confidence 6777777 6777777752 777788877777777666666666555555555555 55666666655554
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-12 Score=132.06 Aligned_cols=171 Identities=20% Similarity=0.295 Sum_probs=85.1
Q ss_pred ccchHhhhhCCceEEEEEecceEE-----eCCCHHHHHHhhhhcccCCCCCCccccCC----------CccccCCCcCCC
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWE-----DIGTIEAFYNANLGITKKPIPDFSFYDRS----------APIYTQPRYLPP 389 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~-----dI~t~~dy~~An~~~l~~~~~~~~~~~~~----------~~i~~~~~~~~~ 389 (520)
.++|..|-+.+.++..+ .++.|. +......|......+.... ..+.|++.- ..+....++.|+
T Consensus 74 ~~~~~~l~~~~~rva~~-~~~~~~~~~w~k~~ill~f~~~~~~~i~~~-~~~~~~dkv~~k~~~~~~~~~~~~~~~I~p~ 151 (316)
T 3tk8_A 74 AHAIEQLDRGALRVAEK-IDGAWTVHQWLKKAVLLSFRLEDNAPMPAG-GYSQFYDKVPSKFANYTAEDFAAGGFRVVPP 151 (316)
T ss_dssp HHHHHHHHTTSSCSEEE-ETTEEEECHHHHHHHHHHHHTCCCEEEEBS-BSCEEEESSCBTTTTCCHHHHHHHCCEECTT
T ss_pred HHHHHHHHhCCCEEeee-ccchHHHHHHHHHHHHHhhhhcccccccCC-CceeeEecccchhcccChhheecCCcEEeCC
Confidence 56666666656677777 444443 3334444433333322221 112444442 112223444454
Q ss_pred ceeecccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-
Q 010006 390 SKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR- 468 (520)
Q Consensus 390 ~~i~~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~- 468 (520)
+.+. .++.||++|+|++ ++|+.++.||++|.|...+.+++ .+.||+++ .|+.++.|.+
T Consensus 152 a~I~----~~~~IG~g~~I~~-----~~I~~g~~IG~~~~I~~~~~Ig~---------~~~IG~~v---~I~~~~~I~~~ 210 (316)
T 3tk8_A 152 AIAR----RGSFIAKNVVLMP-----SYTNIGAYVDEGTMVDTWATVGS---------CAQIGKNV---HLSGGVGIGGV 210 (316)
T ss_dssp CEEB----TTCEECTTCEECS-----EEECTTCEECTTCEECTTEEECT---------TCEECTTC---EECTTCEECCC
T ss_pred eEEe----CCcEEcCCCEECC-----CEEeCCCEECCCCEEccceEECC---------CCEECCCC---EEcCCCEECCC
Confidence 4433 2344444444443 35555666666666655444442 23344444 4555555544
Q ss_pred --------eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCC-------EeCCCcc
Q 010006 469 --------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA-------LIPSGTI 519 (520)
Q Consensus 469 --------~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~-------~i~~gtv 519 (520)
++||++|.||.+++|..+..+++++.++.|++|..+ +.|++.+ .||+|++
T Consensus 211 ~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~-t~I~d~~~~~v~~g~Vp~gsv 275 (316)
T 3tk8_A 211 LEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQS-TKIYDRETGEVTYGRIPAGSV 275 (316)
T ss_dssp CSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEE
T ss_pred cccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC-eeecccccccccccEeCCCCE
Confidence 666666666666666655555555555555555555 4444444 5555554
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-12 Score=123.37 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=58.3
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcc---ccccccccccccCCCcceeeCCCCEEc-------
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY---YETDADRRFLAAKGSVPIGIGKNSHIK------- 467 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~Ig~~~~i~------- 467 (520)
++|++++.|++ |.|. +++|..++.||++|.|...+.++..- --......+.||+++ .|+++++|.
T Consensus 26 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~---~I~~~~~I~~~~~~~~ 102 (270)
T 1j2z_A 26 CVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDN---LIREFCMINPGTEGGI 102 (270)
T ss_dssp CEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSC---EECTTCEECCCCTTTT
T ss_pred CEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCC---EECCCeEEcCCeecCC
Confidence 44444444444 4443 34444444445555554444443210 000111345555555 566666654
Q ss_pred -ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 -RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 -~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.++||+++.|+.++.|.....+++.+.++.++.|..+ ++||+++.|+++++|
T Consensus 103 ~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~-v~Igd~~~Ig~~a~V 155 (270)
T 1j2z_A 103 KKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAI 155 (270)
T ss_dssp SEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred ccEEECCCcEECcccccCCCcEECCCcEEcCCccccCc-cEECCCeEEecCCEE
Confidence 3556666666666655554555555555555555555 666666666666553
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=129.74 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=138.8
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHhC--------C------CCeEEEEeccChhHHH
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS--------N------ISKIYVLTQFNSASLN 151 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~~--------g------i~~I~Iv~~~~~~~i~ 151 (520)
+|.+||||||.||||. ...||+|+||+ |+ |+|+++++.+... | |..+++.+.+..+.+.
T Consensus 103 kvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~ 178 (486)
T 2yqc_A 103 EVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATE 178 (486)
T ss_dssp CEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHH
T ss_pred CeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHH
Confidence 6999999999999995 67899999998 76 9999999999876 6 7778788888889999
Q ss_pred HHHHHhhhccCCCC----cCCCeEEEeeccc--C----CCCCC-CccCcHHHHHHHH-----HHhhhcCcceEEEEeCce
Q 010006 152 RHLSRAYASNMGGY----KNEGFVEVLAAQQ--S----PENPN-WFQGTADAVRQYL-----WLFEEHNVLEFLVLAGDH 215 (520)
Q Consensus 152 ~~l~~~~~~~~~~~----~~~~~v~vl~~~~--~----~~~~~-~~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~ 215 (520)
+|+++...+++... |....+..+.... - +.... .+.|+++.+.... +.+...+.+.+.+...|.
T Consensus 179 ~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN 258 (486)
T 2yqc_A 179 SFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDN 258 (486)
T ss_dssp HHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTB
T ss_pred HHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCC
Confidence 99988544443211 1111111111100 0 00001 1468888776442 233334668899999998
Q ss_pred ecc--ccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEeCC-CC--CEEEeeeCCChhhhhhcccccccccCCchhh
Q 010006 216 LYR--MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERA 290 (520)
Q Consensus 216 l~~--~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~-~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
+.- .| ..++..|.++++++++.+.+... .....|++.... +| +|++|.|+|....... +.. ...
T Consensus 259 ~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~-~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~---~~~------~~~ 327 (486)
T 2yqc_A 259 CLVKVAD-PIFIGFAIAKKFDLATKVVRKRD-ANESVGLIVLDQDNQKPCVIEYSEISQELANKK---DPQ------DSS 327 (486)
T ss_dssp TTCCTTC-HHHHHHHHHHTCSEEEEEEECCS-TTCCCCEEEEETTTTEEEEECGGGSCHHHHHCE---ETT------EEE
T ss_pred ceeeccC-HHHHHHHHHcCCCEEEEEEEcCC-CCCceeEEEEEecCCCEEEEEEecCCHHHhhcc---ccc------ccc
Confidence 433 45 34788888999999988877532 235677776531 34 5888889886532210 000 000
Q ss_pred ccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 291 KEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 291 ~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
....+..++|+|+|+.++|.+++.+
T Consensus 328 ~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 328 KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred cccccceeEEEEEEeHHHHHHHHHh
Confidence 1123578999999999999875554
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=123.03 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEee---------------eEECCCCEECCCCEEcccEE
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIHH---------------SVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~~---------------s~Ig~~~~Ig~~~~I~~~~i 435 (520)
+.+.+.|...+.+.+++.+. ++.| .++.||++|.|++ |.|.+ ++||++|.|+++|.|...+.
T Consensus 11 I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~ 90 (273)
T 3fs8_A 11 IKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTI 90 (273)
T ss_dssp ECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCE
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCE
Confidence 33444444444444444433 2333 4466666666665 55552 66777777776666643333
Q ss_pred ECC-cccccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEcc--------
Q 010006 436 MGA-DYYETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS-------- 503 (520)
Q Consensus 436 ~~~-~~~~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~-------- 503 (520)
++. ......+. .++.||+++ .|+.++.|. +++|++++.||+++.|...+.+++.+.+..++.+..
T Consensus 91 Ig~~~~Ig~~~~I~~~~~Ig~~~---~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~~~~~~~ 167 (273)
T 3fs8_A 91 IGDNFQTGHKVTIRENTKIGNNV---KIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNE 167 (273)
T ss_dssp ECTTCEECSSCEECSSCEECSSC---EECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCSSSSCSC
T ss_pred ECCCCEECCceEECCCCEECCCC---EECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCCCCcccc
Confidence 332 11110000 123333333 334444443 444555555555555544444444444433333332
Q ss_pred --CeEEEcCCCEeCCCccC
Q 010006 504 --GIVTIIKDALIPSGTII 520 (520)
Q Consensus 504 --~~v~Ig~~~~i~~gtvi 520 (520)
+ ++||+++.|+++++|
T Consensus 168 ~~~-v~Ig~~~~IG~~~~I 185 (273)
T 3fs8_A 168 LLG-VTIELFAVIAARSVV 185 (273)
T ss_dssp CCC-CEECTTCEECTTCEE
T ss_pred cCC-cEECCCeEEcCCCEE
Confidence 3 667777777766653
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=125.89 Aligned_cols=144 Identities=12% Similarity=0.205 Sum_probs=74.8
Q ss_pred cccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcc-----cEEECCcccc-
Q 010006 373 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-----TLLMGADYYE- 442 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~-----~~i~~~~~~~- 442 (520)
+++|.+.|.+.+.+.+++.+. .+.| .++.||++|+|++ +.|. ++.||++|.|++++.|.. +.+.++....
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 344555555445555444443 2333 4677788888876 7666 677777777777777653 2222211100
Q ss_pred --------------ccccccccccCCCcceeeCCCCEEc-------ceEECCCCEECCCcEEecCCCcCCcccccCCeEE
Q 010006 443 --------------TDADRRFLAAKGSVPIGIGKNSHIK-------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI 501 (520)
Q Consensus 443 --------------~~~~~~~~~~~~~~~~~Ig~~~~i~-------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I 501 (520)
......+.||+++ .|+++++|. .++||+++.|+.++.|.....+++.+.++.++.+
T Consensus 89 ~a~Ig~~~q~~~~~~~~~~~i~IG~~~---~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i 165 (305)
T 3t57_A 89 HAVVGVKCQDLKYKHGDECFLCIGNNN---EIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLL 165 (305)
T ss_dssp TCEEEECCCCTTCCTTCCEEEEECSSC---EECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred ccEeCccccccceecCCCceEEECCCc---ccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCccc
Confidence 0111223444444 344444442 2444555555555555444444444444444445
Q ss_pred ccCeEEEcCCCEeCCCccC
Q 010006 502 KSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 502 ~~~~v~Ig~~~~i~~gtvi 520 (520)
..+ |+||+++.|+++++|
T Consensus 166 ~g~-v~Igd~~~Ig~~~~V 183 (305)
T 3t57_A 166 AGH-VVVEDNTHTAGASVV 183 (305)
T ss_dssp CTT-CEECSSCEECTTCEE
T ss_pred CCC-CEECCceEEcCCCEE
Confidence 445 677777777766653
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=122.17 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=66.8
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccc---cccccccccccCCCcceeeCCCCEEc-----
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY---ETDADRRFLAAKGSVPIGIGKNSHIK----- 467 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~Ig~~~~i~----- 467 (520)
..++|++++.|++ |.|. +++|+.++.||++|.|...+.++.... -.....++.||+++ .|+++++|.
T Consensus 30 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~---~Ig~~~~I~~g~~~ 106 (265)
T 4e6u_A 30 PYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNN---LIREHCSLHRGTVQ 106 (265)
T ss_dssp TTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSC---EECTTCEEECCCTT
T ss_pred CCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCe---EECCceEECccccc
Confidence 4566666666666 6666 667777777777777776666532100 00111356666666 566666664
Q ss_pred ---ceEECC------------CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 ---RAIIDK------------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 ---~~ii~~------------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++||+ +++||++|.|.+...+.++.++++++.|+.+ ++|.+++.||++++|
T Consensus 107 ~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~-a~V~~~v~Ig~~~~i 173 (265)
T 4e6u_A 107 DNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGN-SGIHQFCKIDSYSMI 173 (265)
T ss_dssp TTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEECTTCEE
T ss_pred CCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCC-CEECCCcEECCCCEE
Confidence 244444 4444445555555555555555555555555 555566666665543
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=118.08 Aligned_cols=128 Identities=22% Similarity=0.242 Sum_probs=92.7
Q ss_pred ccccCCCcCCCceeecccccceEECCCcEEee-eEEe-----eeEECCCCEECCCCEEccc---EEECCccccccccccc
Q 010006 379 PIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRF 449 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-----~s~Ig~~~~Ig~~~~I~~~---~i~~~~~~~~~~~~~~ 449 (520)
.+...+.+.|.+.+. .++.||++|.|+. |.|. ++.||++|.|+++|.|... ..++.+-+ ...+
T Consensus 41 ~i~~~~~I~~~a~i~----~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~----~~~~ 112 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLI----GDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQ----EYSV 112 (213)
T ss_dssp EECTTCEECTTSEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSC----EESE
T ss_pred cCCCCCEECCCCEEe----CceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCc----ccce
Confidence 344455555555554 4678888888887 7775 3799999999999999741 22232110 1356
Q ss_pred cccCCCcceeeCCCCEEcc-eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 450 LAAKGSVPIGIGKNSHIKR-AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~-~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.||+++ .|++++.|.+ ++|+++|.||++++|.+ +.+++.+.++.++.| .+ ++|++++.|++|++|
T Consensus 113 ~IG~~v---~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~-~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 113 WIGDNV---SITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QD-VEIPPGKYVPSGMVI 178 (213)
T ss_dssp EECTTC---EECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ES-CEECTTBEECTTCEE
T ss_pred EECCCc---EECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CC-cEeCCCCEECCCcEE
Confidence 777777 7999999985 99999999999999986 666666666666666 35 678999999998874
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=125.80 Aligned_cols=103 Identities=21% Similarity=0.367 Sum_probs=58.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc---------ceE
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK---------RAI 470 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------~~i 470 (520)
+.|+++|.|++ ++|+.++.||++|.|...+.+++ .+.||+++ .|+.++.|. .++
T Consensus 117 ~~Ig~g~~I~~-----~~i~~~~~IG~~~~I~~~~~Ig~---------~~~IG~~v---~I~~~~~i~g~~~~~~~~~v~ 179 (276)
T 3gos_A 117 AFIARNTVLMP-----SYVNIGAFVDEGTMVDTWATVGS---------CAQIGKNV---HLSGGVGIGGVLEPLQANPTI 179 (276)
T ss_dssp CEECTTCEECS-----EEECTTCEECTTCEECTTEEECT---------TCEECTTC---EECTTCEECCCCSSTTSCCCE
T ss_pred CEECCCCEEcC-----CEEcCCeEECCCCEECCCCEECC---------CCEECCCC---EECCCCEECCccccCCCCCeE
Confidence 44444444443 24555555555555554444332 23444444 566666653 367
Q ss_pred ECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCC-------EeCCCccC
Q 010006 471 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA-------LIPSGTII 520 (520)
Q Consensus 471 i~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~-------~i~~gtvi 520 (520)
||+||.||.+++|..+..+++.+.++.|++|..+ +.|++++ .||+++++
T Consensus 180 IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~-~~I~~~~~~~~~~g~Vp~~svv 235 (276)
T 3gos_A 180 IEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS-TRIYDRETGEVHYGRVPAGSVV 235 (276)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CCEEETTTCCEECSEECTTEEE
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCC-cEEccccccceeccccCCCcEE
Confidence 7777777777777666666666666666666666 5555555 66666653
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=114.50 Aligned_cols=105 Identities=14% Similarity=0.305 Sum_probs=83.9
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc------ceE
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------RAI 470 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~------~~i 470 (520)
.+.|+++|.|.+ +.|. ++.||++|.|+++|.|.... .++.||+++ .|++++.|. +++
T Consensus 33 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~------------~~i~IG~~~---~I~~~~~I~~~~~~g~~~ 97 (191)
T 3ixc_A 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDV------------DKIEVGEGT---NIQDNTVVHTDSMHGDTV 97 (191)
T ss_dssp CCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEECC----CCEE
T ss_pred CCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCC------------CCeEECCCC---EECCCCEEeecCCcCCeE
Confidence 356667777766 5555 78899999999999997432 123444455 789999987 899
Q ss_pred ECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 471 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 471 i~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
|++++.||+++.|.+ ..+++.++++.++.|.++ ++||++++|++|++|
T Consensus 98 Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 98 IGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLL 145 (191)
T ss_dssp ECTTCEECTTCEECS-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred ECCCCEECCCCEEEC-CEECCCCEECCCCEEeCC-eEECCCCEECCCCEE
Confidence 999999999999865 788888899999999998 899999999999875
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=118.75 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=139.6
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceec---CCccchhHHHHHHhHh-------------CCCCeEEEEeccChhHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN-------------SNISKIYVLTQFNSASLN 151 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv---~G~~plI~~~l~~l~~-------------~gi~~I~Iv~~~~~~~i~ 151 (520)
.++.+|+||||.||||+ ...||+|+|| .|+ |+++++++.+.+ .+|.-++....+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 47999999999999996 4799999999 776 999999998853 567766666678889999
Q ss_pred HHHHHhhhccCCCC----cCCCeEEEeeccc-----CCCCCCC-ccCcHHHHHHHH-----HHhhhcCcceEEEEeCce-
Q 010006 152 RHLSRAYASNMGGY----KNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDH- 215 (520)
Q Consensus 152 ~~l~~~~~~~~~~~----~~~~~v~vl~~~~-----~~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~- 215 (520)
+++++...|++... |....+..+.... .+....| +.|+++.+.... +.+.....+++++.+.|.
T Consensus 110 ~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~ 189 (405)
T 3oc9_A 110 NYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNI 189 (405)
T ss_dssp HHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBT
T ss_pred HHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCc
Confidence 99998554544210 0111111110000 0000112 367777666432 223334567899999999
Q ss_pred eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe-CCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCC
Q 010006 216 LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMP 294 (520)
Q Consensus 216 l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~-d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (520)
|.......++..|.++++++++-+.+.... ....|.++. |...+|+++.|.|.. .... ..+ ....-
T Consensus 190 L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e-~e~~-~~~----------g~l~f 256 (405)
T 3oc9_A 190 LCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDE-LNKQ-LSN----------GEFIY 256 (405)
T ss_dssp TCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTT-TTCB-CTT----------SCBSS
T ss_pred ccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHH-Hhhc-CCC----------Cceee
Confidence 888888889999999999999888875431 256777764 544589999888876 2110 000 00112
Q ss_pred ceeeeeEEEEeHHHHHHHH
Q 010006 295 YIASMGIYVISKDVMLNLL 313 (520)
Q Consensus 295 ~l~~~GIyifs~~vl~~ll 313 (520)
+..+.++++|+.++|.++.
T Consensus 257 n~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 257 NCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CEEEEEEEEEEHHHHHHHT
T ss_pred ccceeEeeecCHHHHHHhh
Confidence 3567889999999998876
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=131.95 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=62.9
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc-------
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK------- 467 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~------- 467 (520)
.+++||++|.|++ |.|. +++||.+|.||++|.|.++++..++....... ..+.||+++ .||.++.+.
T Consensus 324 ~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~---~Ig~~~~i~~~~~~~~ 400 (468)
T 1hm9_A 324 EESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNV---NFGAGTITVNYDGKNK 400 (468)
T ss_dssp ESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTC---EECTTCEEECBCSSCB
T ss_pred eccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCc---EECCCcEEecCcCccC
Confidence 3456666667776 6666 67777777777777777666655432211111 345677777 677777774
Q ss_pred -ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 468 -RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 -~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.++||++|.||.++.|.+ .+++|++++|+++
T Consensus 401 ~~~~Ig~~~~Ig~~~~i~~------~v~Ig~~~~i~~~ 432 (468)
T 1hm9_A 401 YKTVIGDNVFVGSNSTIIA------PVELGDNSLVGAG 432 (468)
T ss_dssp CCEEECTTCEECTTCEEES------SCEECTTCEECTT
T ss_pred CCcEECCCeEECCCCEEeC------CcEECCCCEECCC
Confidence 377777777777777765 3456666767766
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=115.59 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
++.||++|.|++ |.|. ++.||++|.|+++|.|.
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~ 86 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALY 86 (205)
T ss_dssp GEEECSSEEECTTCEEEEEEEECSSEEECTTCEEE
T ss_pred eeEECCCCEECCCCEEccceEECCCCEECCCeEEE
Confidence 455666666665 5555 56667777777766663
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=122.84 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=65.4
Q ss_pred cccC-CCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccc--ccc
Q 010006 373 FYDR-SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA--DRR 448 (520)
Q Consensus 373 ~~~~-~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~--~~~ 448 (520)
++++ ++.+..++.+.|++.+. .+++|+++|.|++ |.|.+|+||+++.|+++++|+++++.+++..-..+ ..+
T Consensus 60 ~I~~~~a~I~~~a~I~~~~~I~----g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~ 135 (334)
T 2pig_A 60 WIYDENAMAFAGTEITGNARIT----QPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQ 135 (334)
T ss_dssp EECCTTCEEETTCEECTTCEEE----SSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred EEcCCCeEEcCCcEECCCcEEe----eeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence 3444 45555555555555554 4567777777776 77777777777777777777777666554211111 112
Q ss_pred ccccCC-------CcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEc
Q 010006 449 FLAAKG-------SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 502 (520)
Q Consensus 449 ~~~~~~-------~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~ 502 (520)
+.+..+ ...+.|+++++|.+++|+++|+|+.+++|. .+.+.+.+.+++++.+.
T Consensus 136 s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~ 195 (334)
T 2pig_A 136 SEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIE 195 (334)
T ss_dssp CEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEE
T ss_pred EEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEEC
Confidence 222111 011245555555555555555555555554 23334444444444433
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.7e-12 Score=132.01 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=71.2
Q ss_pred cccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEc------------------c
Q 010006 373 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE------------------D 432 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~------------------~ 432 (520)
++.+.+.|...+.+.+++.+. ++.|.++.||++|.|+. |.|.++.||++|.||++|.|. +
T Consensus 276 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 355 (459)
T 4fce_A 276 TIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK 355 (459)
T ss_dssp EECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred EECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence 344444443334444444443 33344566666666665 655555555555555555443 2
Q ss_pred cEEECCcccccccc-ccccccCCCcceeeCCCCEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEcc
Q 010006 433 TLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 503 (520)
Q Consensus 433 ~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~ 503 (520)
+.+..+........ ..+.+|+++ .||.++.+. .++||++|.||.+++|.. +++||++++|++
T Consensus 356 ~~i~~~~~i~~~~~i~~~~Ig~~~---~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~------gv~Ig~~~~iga 426 (459)
T 4fce_A 356 ARLGKGSKAGHLSYLGDAEIGAGV---NIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVA------PVTVANGATIGA 426 (459)
T ss_dssp EEECTTCEEEEEEEEEEEEECTTC---EECTTCEEECBCSSCBCCEEECTTCEECTTCEEES------SEEECTTCEECT
T ss_pred eEEcCCCEECCceEECCeEECCCC---EECCCCEEeccccccCCCCEECCCeEEcCCCEEcC------CcEECCCCEECC
Confidence 22222211111111 345777777 677777764 367777777777777764 556666777777
Q ss_pred CeEEEcCCCEeCCCc
Q 010006 504 GIVTIIKDALIPSGT 518 (520)
Q Consensus 504 ~~v~Ig~~~~i~~gt 518 (520)
| .+|-++ |++++
T Consensus 427 g-svV~~~--v~~~~ 438 (459)
T 4fce_A 427 G-TTVTRD--VAENE 438 (459)
T ss_dssp T-CEECSC--BCTTC
T ss_pred C-CEEccc--cCCCC
Confidence 7 444333 34444
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-11 Score=109.63 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=81.0
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEEC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIID 472 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~ 472 (520)
..|++++.|.+ +.|. ++.||++|.|+++|.|.... ..+.||+++ .|++++.|. +++|+
T Consensus 13 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~------------~~v~IG~~~---~I~~~~~I~~~~~~~~~Ig 77 (173)
T 1xhd_A 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDV------------SPTIIGDRV---NVQDQCTLHQSPQYPLILE 77 (173)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECCTTCCEEEC
T ss_pred CEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCC------------CeEEECCCC---EECCCCEEEeCCCCCeEEC
Confidence 45666666665 5554 78999999999999987641 123344455 789999997 79999
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++.||.++.|.+ ..+++.++++.++.|.++ ++||++++|++|++|
T Consensus 78 ~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 123 (173)
T 1xhd_A 78 DDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (173)
T ss_dssp TTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred CCCEECCCCEEeC-CEECCCCEEcCCCEEcCC-CEECCCCEECCCCEE
Confidence 9999999999864 677888888888888888 889999999988864
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-11 Score=110.07 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=82.8
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE-----------
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI----------- 466 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i----------- 466 (520)
..|++++.|.+ +.|. ++.||++|.|+++|.|.... ..+.||+++ .|++++.|
T Consensus 16 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~------------~~i~IG~~~---~I~~~~~I~~~~~~~~~~~ 80 (187)
T 3r3r_A 16 PGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDV------------NYVAIGART---NIQDGSVLHVTHKSSSNPH 80 (187)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECBCCBTTBC-
T ss_pred cccCCCeEECCCCEEECceEECCCCEECCCcEEEcCC------------ccEEECCCC---EECCCCEEecCCccccCCC
Confidence 45666666665 5554 78999999999999887543 123344455 78999998
Q ss_pred -cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 467 -KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 467 -~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+++|++++.||.++.|.+ ..+++.++++.++.|..+ ++||++++|++|++|
T Consensus 81 ~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 81 GNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLV 133 (187)
T ss_dssp CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred CCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 6899999999999999965 788888999999999888 899999999999875
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=119.54 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=64.2
Q ss_pred ccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 451 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~ 451 (520)
+.+.+.+...+.+.+++.+. .+++|+++|.|++ |.|. +++||.+|.||++|.|...+.++ .++.|
T Consensus 127 i~~~~~i~~~a~Ig~~~~I~----~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~---------~~~~I 193 (374)
T 2iu8_A 127 IHPTAVIHPTAIIEDHVCIE----PYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIR---------ERVSI 193 (374)
T ss_dssp BCTTCEECTTCEECTTCEEC----TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC---------SSEEE
T ss_pred cCCCCEECCCcEECCCCEEC----CCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEc---------ccceE
Confidence 44444444444555544443 3344444444444 4444 45555555555555555333332 13444
Q ss_pred cCCCcceeeCCCCEEc---------------------ceEECCCCEECCCcEEe----------------cCCCcCCccc
Q 010006 452 AKGSVPIGIGKNSHIK---------------------RAIIDKNARIGDNVKIV----------------NSDSVQEAAR 494 (520)
Q Consensus 452 ~~~~~~~~Ig~~~~i~---------------------~~ii~~~~~Ig~~~~i~----------------~~~~v~~~~~ 494 (520)
|+++ .|++++.|. .++|+++|.||+|++|. +...+..+++
T Consensus 194 G~~~---~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~ 270 (374)
T 2iu8_A 194 GKRV---IIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVE 270 (374)
T ss_dssp CTTC---EECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCE
T ss_pred CCCC---EECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccE
Confidence 4444 455555542 26666666666666653 2333344445
Q ss_pred ccCCeEEccC-----eEEEcCCCEeCCCcc
Q 010006 495 ETDGYFIKSG-----IVTIIKDALIPSGTI 519 (520)
Q Consensus 495 ~~~~~~I~~~-----~v~Ig~~~~i~~gtv 519 (520)
+|++++|..+ .++||+++.|+.++.
T Consensus 271 IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~ 300 (374)
T 2iu8_A 271 VGQHSMIVAQAGIAGSTKIGNHVIIGGQAG 300 (374)
T ss_dssp ECTTCEECTTCEECTTCEECSSCEECTTCE
T ss_pred ECCCCEEccCcccCCCcEECCCeEEecCcE
Confidence 5555554443 145666666655553
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=109.49 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=76.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc--------
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-------- 467 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-------- 467 (520)
+++.|+++++|.+ |.|. +..||++|.|+++|.|... ..++.||+++ .|++++.|.
T Consensus 11 ~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~------------~g~i~IG~~~---~I~~~~~I~~~~~~~~~ 75 (194)
T 3tv0_A 11 KSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAE------------AGPIVIGEGN---LIEEQALIINAYPDNIT 75 (194)
T ss_dssp -CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEES------------SSCEEECTTC---EECTTCEEEECCCSCC-
T ss_pred CCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccC------------CCCeEECCCc---cccCCcccccccccccc
Confidence 3456666666665 5554 6677777777777776421 0234455555 566666663
Q ss_pred ---------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 ---------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 ---------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.++|++++.|+.++.+. ...+++.++++.++.|+.+ |+||++|+|++|++|
T Consensus 76 ~~~~~~~~~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV 135 (194)
T 3tv0_A 76 PDTEDPEPKPMIIGTNNVFEVGCYSQ-AMKMGDNNVIESKAYVGRN-VILTSGCIIGACCNL 135 (194)
T ss_dssp --------CCEEECSSCEECTTCEEC-CSEECSSCEECTTCEECTT-EEECSSCEECTTCEE
T ss_pred cccccCcCCceEECCcceEecceeEe-eeeecccceecceeeECCe-EEECCCCEECCCCEE
Confidence 46888888888888885 4678888899999999999 999999999999875
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=120.15 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=28.0
Q ss_pred eEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEec
Q 010006 416 SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 416 s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 485 (520)
++||.+|.||++|.|..++.+++.. +......+.||+++ .||.++.|. +++||++|.||++++|..
T Consensus 171 ~~Ig~~~~IG~~v~I~~~~~i~~~~-~~~~~~~v~IGd~v---~IG~~a~I~~gv~IG~~avIgagsvV~~ 237 (304)
T 3eg4_A 171 ATVGSCAQIGKNVHLSGGVGIGGVL-EPMQAGPTIIEDNC---FIGARSEVVEGCIVREGSVLGMGVFIGK 237 (304)
T ss_dssp EEECTTCEECTTCEECTTCEECCCC-SSTTCCCCEECTTC---EECTTCEECTTCEECTTCEECTTCEECT
T ss_pred cEECCCCccCCCcEECCCCEECCcc-ccCccCCeEEcCCC---EECCCCEEcCCcEECCCcEECCCCEEcC
Confidence 4555555555555554444443311 11111234444444 444444332 444444444444444443
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-11 Score=109.26 Aligned_cols=104 Identities=13% Similarity=0.227 Sum_probs=81.5
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc---------
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR--------- 468 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~--------- 468 (520)
..|++++.|.+ +.|. ++.||++|.|+++|.|.... ..+.||+++ .|++++.|..
T Consensus 20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~------------~~i~IG~~~---~I~~~~~I~~~~~~~~~~~ 84 (189)
T 3r1w_A 20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDM------------HHIRIGART---SVQDGSVLHITHASDYNPG 84 (189)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECBCCSSSSTT
T ss_pred CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCC------------CceEECCCC---EECCCCEEecCCcccCCCC
Confidence 34666666665 5554 78999999999999886332 123344455 7888888865
Q ss_pred ---eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 ---AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ---~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|++++.||.++.|.+ ..+++.++++.++.|..+ ++||++++|++|++|
T Consensus 85 ~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 137 (189)
T 3r1w_A 85 GYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDG-AIVEDEVIVAAGATV 137 (189)
T ss_dssp CBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred CCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCC-CEECCCCEEccCCEE
Confidence 49999999999999976 788899999999999988 999999999999875
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-11 Score=114.52 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc----ceEEC
Q 010006 398 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----RAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----~~ii~ 472 (520)
.++.|++++.|.. +.+.... ...+.||++|.|.+.+.+.. ..++.||+++ .|++++.|. +++||
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~-~~~v~Ig~~~~I~~~~~i~~-------g~~v~IG~~~---~Ig~~~~I~~~~~~~~IG 130 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGD-NNYVRIHKNSKIKGDIVATK-------GSKVIIGRRT---TIGAGFEVVTDKCNVTIG 130 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESS-SCEEEECTTCEEEEEEEEES-------SCEEEECTTC---EECTTCEEECSSSEEEEC
T ss_pred CEEEEcCCcEEecceEEEeCC-CCeEEECCCCEECCceEEcc-------CCEEEECCCC---EECCCcEEEeCCCCeEEC
Confidence 5588888888886 4441000 22334444444444443321 1355677777 789999988 89999
Q ss_pred CCCEECCCcEEecC-------------------CCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 473 KNARIGDNVKIVNS-------------------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~-------------------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|.||++|+|.+. ..+++.+++|.++.|.++ ++||++++|++|++|
T Consensus 131 ~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~g-v~IG~~~~IgagsvV 196 (252)
T 3jqy_B 131 HDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKG-VSVGSGSVIGYGSIV 196 (252)
T ss_dssp TTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTT-CEECTTCEECTTCEE
T ss_pred CCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCC-CEECCCCEECCCCEE
Confidence 99999999999886 345666667777777777 888888888888875
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=112.43 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred EECCCcEEee-eEEe---eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc----ceEEC
Q 010006 401 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----RAIID 472 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----~~ii~ 472 (520)
.||+++.|+. +.|. +..||++|.|+++|.|...+.+++ + +.|++++.|. +++||
T Consensus 34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~---------------~---~~I~~~~~I~~~~~~~~IG 95 (205)
T 3vbi_A 34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGS---------------Y---SHIAAYTALYGGEVGIEMY 95 (205)
T ss_dssp EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECS---------------S---EEECTTCEEEEEEEEEEEC
T ss_pred EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECC---------------C---CEECCCeEEEcCCccEEEC
Confidence 3444444444 3333 467777777777777765555553 2 3677777773 37778
Q ss_pred CCCEECCCcEE-------------------------ecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 473 KNARIGDNVKI-------------------------VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 473 ~~~~Ig~~~~i-------------------------~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++|.||++|+| .....+++.+++|.++.|..+ ++||++++|++|++|
T Consensus 96 ~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-v~Ig~~~~Ig~gsvV 167 (205)
T 3vbi_A 96 DFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN-VVIGEGVAVGAMSMV 167 (205)
T ss_dssp TTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS-CEECTTCEECTTCEE
T ss_pred CCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCC-CEECCCCEEcCCCEE
Confidence 88888888777 234455566666666666666 677777777777664
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=118.21 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=65.4
Q ss_pred ccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEccc-EEECCcccccccc----
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDT-LLMGADYYETDAD---- 446 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~-~i~~~~~~~~~~~---- 446 (520)
+++.+.|...+.+.+++.+. ++.|.+++|+++|.|++ +.|.+++|+.+|.|+.++++.+. .++++.-+..+..
T Consensus 74 I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~ 153 (334)
T 2pig_A 74 ITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQ 153 (334)
T ss_dssp ECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEE
T ss_pred ECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeE
Confidence 34444444444444444443 45667888888888886 88888888888888888766544 3433311111111
Q ss_pred -------ccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 447 -------RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 447 -------~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
..+.+++|+ .|+.++.|.+++|++++.|++++.+.+
T Consensus 154 I~~~a~I~~s~I~~g~---~I~~~a~I~~svI~~~a~I~~~a~V~~ 196 (334)
T 2pig_A 154 IYDRATVNHSRIVHQV---QLYGNATITHAFIEHRAEVFDFALIEG 196 (334)
T ss_dssp ECTTCEEESCEEETTC---EECTTCEEESEEECTTCEECTTCEEEC
T ss_pred ECCCCEEeccEEcCCC---EEcCCeEEeCcEEcCCCEECCCcEECC
Confidence 234555555 577777777777777777777766654
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=106.82 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=58.6
Q ss_pred ccCCCccccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
++|.+.|...+.+.+++.+. .+.| .++.||++|.|+. +.|. ++.||++|.|+++|.|.+.+.++
T Consensus 6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig------------ 73 (192)
T 3mqg_A 6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLE------------ 73 (192)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEEC------------
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEEC------------
Confidence 44444444444444444443 1222 3466666666665 5444 35555555555555554444433
Q ss_pred cccCCCcceeeCCCCEE----------------cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 450 LAAKGSVPIGIGKNSHI----------------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i----------------~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+++ .||+++.+ ..++|+++|.||.+++|.++. +++++++|+++
T Consensus 74 ---~~~---~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~------~Ig~~~~Igag 132 (192)
T 3mqg_A 74 ---DDV---FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA------TIGRYAFVGAG 132 (192)
T ss_dssp ---TTC---EECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTC------EECTTCEECTT
T ss_pred ---CCC---EECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCC------EECCCCEEcCC
Confidence 233 45555444 458888888888888887643 44445555555
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=105.17 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=75.4
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEEC
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIID 472 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~ 472 (520)
..|+++++|.+ +.|. ++.||++|.|+++|.|.... ..+.||+++ .|++++.|. +++|+
T Consensus 11 ~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~------------~~~~IG~~~---~I~~~~~I~~~~~~~~~Ig 75 (173)
T 1v3w_A 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDI------------EQIYVGKYS---NVQDNVSIHTSHGYPTEIG 75 (173)
T ss_dssp CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECBTTBCEEEC
T ss_pred CEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCC------------ceEEECCCC---EECCCcEEEecCCCCeEEC
Confidence 34566666665 5444 78899999999999887530 123444455 788888887 58899
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++.|+.++.|.+ ..+++.++++.++.|..+ ++||++++|++|++|
T Consensus 76 ~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V 121 (173)
T 1v3w_A 76 EYVTIGHNAMVHG-AKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp SSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred CCCEECCCCEECC-CEECCCCEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 9999888888854 667777777777777777 788888888887764
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=109.09 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=14.1
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
++.|++||+|++ +++|+.++.||++|.|.
T Consensus 111 ~v~IG~g~~I~~----~~~i~~~~~IG~~~~I~ 139 (220)
T 4ea9_A 111 SVRLGEGVAVMA----GVAINADSWIGDLAIIN 139 (220)
T ss_dssp TCEECSSCEECT----TCEECTTCEECTTCEEC
T ss_pred CCEECCCCEEcC----CCEECCCCEECCCCEEC
Confidence 345666666664 33344444444444444
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=123.47 Aligned_cols=145 Identities=21% Similarity=0.242 Sum_probs=103.4
Q ss_pred ccccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEEC-Ccccccccc-c
Q 010006 372 SFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-R 447 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~-~~~~~~~~~-~ 447 (520)
.++.+.+.|...+.+..++.+. ++.|.+++||++|.|++ |.|.++.||++|.|+++|.|...+.++ ++.....++ .
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~ 351 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIK 351 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEe
Confidence 3445555555555566666654 56667899999999998 999999999999999999998655544 333322222 3
Q ss_pred cccccCCCc--------ceeeCCCCEEc-ceEECC-------CCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 448 RFLAAKGSV--------PIGIGKNSHIK-RAIIDK-------NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 448 ~~~~~~~~~--------~~~Ig~~~~i~-~~ii~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
++.+++++. ++.||+++.|. +++|.. +++||++|+|+..+.+..+.+++++++|+.+ .+|.++
T Consensus 352 ~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~-s~v~~~ 430 (456)
T 2v0h_A 352 KSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAG-TTITRD 430 (456)
T ss_dssp SCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTT-CEECSC
T ss_pred ccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCC-CEECCC
Confidence 455666642 35788888886 677654 8899999999988888988899999999999 555443
Q ss_pred CEeCCCcc
Q 010006 512 ALIPSGTI 519 (520)
Q Consensus 512 ~~i~~gtv 519 (520)
|+++++
T Consensus 431 --v~~~~~ 436 (456)
T 2v0h_A 431 --VGENEL 436 (456)
T ss_dssp --BCTTCE
T ss_pred --cCCCCE
Confidence 455543
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=116.51 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=63.3
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc---------e
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR---------A 469 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~ 469 (520)
++.||++|+|+ .++|+.++.||++|.|...+.+++ .+.||+++ .|+.++.|.+ +
T Consensus 141 ~v~Ig~g~~I~-----~~~I~~~~~IG~~~~I~~~~~Ig~---------~~~IG~~v---~I~~~~~i~~~~~~~~~~~v 203 (304)
T 3eg4_A 141 SAYIAPNAILM-----PSFVNLGAYVDKGAMIDTWATVGS---------CAQIGKNV---HLSGGVGIGGVLEPMQAGPT 203 (304)
T ss_dssp TCEECTTCEEC-----SEEECTTCEECTTCEECTTEEECT---------TCEECTTC---EECTTCEECCCCSSTTCCCC
T ss_pred CcEECCCCEEe-----CCEECCCCEECCCcEEcCCcEECC---------CCccCCCc---EECCCCEECCccccCccCCe
Confidence 34455555554 336777777777777776555553 34566666 6777777766 8
Q ss_pred EECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCC
Q 010006 470 IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA 512 (520)
Q Consensus 470 ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~ 512 (520)
+||++|.||.+|+|..+..+++++.++.|++|..+ ++|++++
T Consensus 204 ~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g-~~Igd~~ 245 (304)
T 3eg4_A 204 IIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKS-TKIVDRA 245 (304)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CCEEETT
T ss_pred EEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCC-eEECccc
Confidence 88888888888888777667776666667666666 4444443
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=110.06 Aligned_cols=70 Identities=24% Similarity=0.405 Sum_probs=35.3
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-------
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR------- 468 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~------- 468 (520)
.++.||++|+|+. +.|. ++.||++|.|+.+|.|.+.+ .||+++ .|++++.+.+
T Consensus 102 ~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~---------------~IG~~~---~I~~~~~i~~~~~~~~~ 163 (240)
T 3r8y_A 102 DHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRA---------------TVGKNC---HVGAGAVLAGVIEPPSA 163 (240)
T ss_dssp SSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC---------------EECTTC---EECTTCEECCCCSCTTS
T ss_pred CCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC---------------EECCCc---EECCCcEECCCccCCCC
Confidence 3455666666654 3332 34444444444444443222 233333 5666666654
Q ss_pred --eEECCCCEECCCcEEec
Q 010006 469 --AIIDKNARIGDNVKIVN 485 (520)
Q Consensus 469 --~ii~~~~~Ig~~~~i~~ 485 (520)
++|+++|.||.+++|..
T Consensus 164 ~~~~Ig~~~~IG~~~~I~~ 182 (240)
T 3r8y_A 164 KPVIVEDDVVIGANVVVLE 182 (240)
T ss_dssp CCCEECTTCEECTTCEECT
T ss_pred CCcEECCCCEECCCCEECC
Confidence 66666666666666643
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=107.62 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=73.3
Q ss_pred eEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc---------
Q 010006 400 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR--------- 468 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~--------- 468 (520)
..|+++++|.+ +.|. +..||++|.|+++|.|.... ..++.||+++ .|++++.|..
T Consensus 40 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~-----------~~~v~IG~~~---~Ig~~~~I~~~~~~~~ig~ 105 (213)
T 3kwd_A 40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADE-----------GTPFHIGSRT---NIQDGVVIHGLQQGRVIGD 105 (213)
T ss_dssp CEECTTCEECTTSEEEESEEECTTCEECTTCEEEESS-----------SCCEEECTTC---EECTTCEEEECSSCCEECT
T ss_pred CcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCC-----------CCceEECCCC---EECCCCEEEecCCCceecc
Confidence 34555555554 4444 67888888888888886530 0123444455 6777777763
Q ss_pred ------eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 469 ------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 469 ------~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++||+++.||.++.|.+...+++.+++|.++.|. + ++||++++|++|++|
T Consensus 106 ~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~-~-~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 106 DGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVF-N-ARVGAGCVVMMHVLI 161 (213)
T ss_dssp TSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEE-E-EEECTTCEECSSCEE
T ss_pred CCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEe-C-cEECCCCEEcCCCEE
Confidence 8888888888888887767777777777777776 3 778888888888864
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-10 Score=116.09 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=73.5
Q ss_pred CcCCCceee-cccc-cceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeC
Q 010006 385 RYLPPSKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG 461 (520)
Q Consensus 385 ~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig 461 (520)
.+.+++.+. ++.| .+++||++|.|+. |.|.+++||+++.|++++.|+++++.++ +.||
T Consensus 264 ~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~-------------------~~Ig 324 (401)
T 2ggo_A 264 YIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED-------------------VNFG 324 (401)
T ss_dssp EECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT-------------------CEEC
T ss_pred EECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC-------------------cEEC
Confidence 344444442 3445 4688999999998 8888899999999999999987777554 3566
Q ss_pred CCCEEcc---------eEEC----------CCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 462 KNSHIKR---------AIID----------KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 462 ~~~~i~~---------~ii~----------~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.++.|.+ +.++ .+++||++|+|..++.+.++.+++++++|++| .+|.++ |+++++
T Consensus 325 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~g-svv~~~--vp~~~~ 398 (401)
T 2ggo_A 325 AGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPG-AVVNRD--VGYGEF 398 (401)
T ss_dssp TTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTT-CEECSC--BCTTCE
T ss_pred CCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCC-CeEccc--cCCCcE
Confidence 6666541 1222 24555555555555555566677778888877 555554 566654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=108.40 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=60.6
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----------
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----------- 467 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~----------- 467 (520)
.|+++++|.+ |.|. ++.||++|.|+++|.|.+..- .++.||+++ .|++++.|.
T Consensus 61 ~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~-----------~~i~IG~~~---~Ig~~~~I~~~~~~~~~g~~ 126 (247)
T 1qre_A 61 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEG-----------MPIFVGDRS---NVQDGVVLHALETINEEGEP 126 (247)
T ss_dssp EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSS-----------CCEEECTTC---EECTTCEEEECCSBCTTSCB
T ss_pred EECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCC-----------CCEEECCCC---EECCCeEEEecccccccCcc
Confidence 3455555554 4443 677888888888887765420 012223333 455555553
Q ss_pred -------------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 468 -------------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 468 -------------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++||+++.||++|.|.+...+++.+++|.++.|.+ ++||++++|++|++|
T Consensus 127 ~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 127 IEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSAA 190 (247)
T ss_dssp CGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCEE
T ss_pred cccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCEE
Confidence 367777777777777765455556556665655554 566666666666653
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=114.49 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=47.0
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc---------eE
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR---------AI 470 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~i 470 (520)
+.||+||+|+. +++|+.++.||++|.|...+.. .+.||+++ .|+.++.|.. ++
T Consensus 197 A~IGeGv~Igp----~a~Vn~na~IGdg~iI~~~a~i-----------gv~IGdnv---~IgpGa~IgG~~~~~~~~~V~ 258 (347)
T 3r5d_A 197 AYIGEGTTVMH----EGFVNFNAGTEGPGMIEGRVSA-----------GVFVGKGS---DLGGGCSTMGTLSGGGNIVIS 258 (347)
T ss_dssp EEECTTEEECT----TCEECTTEEESSSEEECSEECT-----------TCEECTTE---EECTTCEECC------CCCCE
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEcCCceE-----------eEEECCCC---EECCCCEEccccCCCCccceE
Confidence 44555555553 3344444444444444433321 14455555 6777776653 67
Q ss_pred ECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 471 IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 471 i~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
||+||.||.|++| + ..||++|+|+.| ++|.+++.|
T Consensus 259 IGdnv~IGAnAtI--G------VtIGd~~iIGAG-SVVtkdt~I 293 (347)
T 3r5d_A 259 VGEGCLIGANAGI--G------IPLGDRNIVEAG-LYITAGTKV 293 (347)
T ss_dssp ECTTCEECTTCEE--C------SCBCTTCEECTT-CEECTTCEE
T ss_pred ECCCCEECCCCEE--e------eEECCCCEECCC-CEECCCCEE
Confidence 7777777777777 2 344555555555 444444444
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=111.74 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=32.2
Q ss_pred ccccCCCcceeeCCCCEEcc---------eEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 449 FLAAKGSVPIGIGKNSHIKR---------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~~---------~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+.||+++ .|+.++.|.. ++||+||.||.|++| +..+++.+.|+.|++|..+
T Consensus 208 v~IGd~v---~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkd 267 (332)
T 3fsy_A 208 VVVGDGS---DVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAG 267 (332)
T ss_dssp CEECTTC---EECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTT
T ss_pred eEECCCC---EECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCC
Confidence 5566666 6777777753 788888888888887 4445554444444444444
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.7e-10 Score=108.96 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=33.8
Q ss_pred eeCCCCEEc-ceEECCCCEECCCcEEec--------CCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 459 GIGKNSHIK-RAIIDKNARIGDNVKIVN--------SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~--------~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|+.+++|. +++||+||.|+.++.|.+ ...+++++++|.++.|..+ |+||++++|++|++|
T Consensus 141 ~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~g-v~IG~~avIgagsvV 210 (276)
T 3gos_A 141 MVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEG-VIVEEGSVISMGVFI 210 (276)
T ss_dssp EECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 445555554 255555555555555533 3345555555555555555 666666666666653
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=109.71 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=46.4
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
+|+.+|.|++ |.|. ++.||.+|.||++|.|..++.++...... ....+.||+++ .||.++.|. ++.||++|.|
T Consensus 170 ~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~-~~~~v~IGd~v---~IG~~a~I~~gv~IG~g~vI 245 (316)
T 3tk8_A 170 YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPL-QANPVIIEDNC---FIGARSEVVEGVIVEENSVI 245 (316)
T ss_dssp EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSST-TSCCCEECTTC---EECTTCEECTTCEECTTCEE
T ss_pred EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccc-cCCCcEECCCC---EECCCCEEcCCCEECCCCEE
Confidence 3444444444 4444 57777777777777777776665422111 12345555555 556555553 5555555555
Q ss_pred CCCcEEecCCCc
Q 010006 478 GDNVKIVNSDSV 489 (520)
Q Consensus 478 g~~~~i~~~~~v 489 (520)
|++++|.....+
T Consensus 246 gagsvV~~~t~I 257 (316)
T 3tk8_A 246 SMGVYLGQSTKI 257 (316)
T ss_dssp CTTCEECTTCCE
T ss_pred cCCCEEcCCeee
Confidence 555555543333
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=103.26 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=13.3
Q ss_pred eEECCCcEEee-eEEee----eEECCCCEECC
Q 010006 400 SVIGEGCVIKN-CKIHH----SVVGLRSCISE 426 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i~~----s~Ig~~~~Ig~ 426 (520)
+.||++|.|++ +.+.. +.||++|.|++
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~ 90 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGN 90 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECS
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECC
Confidence 55566666655 44431 44444444444
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=116.26 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=66.9
Q ss_pred ccccCCCccccCCCcCCCceee-cccccceEECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccc
Q 010006 372 SFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRF 449 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~ 449 (520)
.++++.+.+...+.+.+++.+. ++.|.+++||++|.|+. |.|.+++||++|.|+++|.|.+++|.++
T Consensus 280 a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~----------- 348 (496)
T 3c8v_A 280 ASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM----------- 348 (496)
T ss_dssp CEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET-----------
T ss_pred cEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCC-----------
Confidence 4566666555555566666554 45567788888888887 8888888888888888888877555544
Q ss_pred cccCCCcceeeCCCCEEcc-----eEECCCCEECCCcEEe
Q 010006 450 LAAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKIV 484 (520)
Q Consensus 450 ~~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i~ 484 (520)
+.||.++.|.. ++|+++|.||.++++.
T Consensus 349 --------v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~ 380 (496)
T 3c8v_A 349 --------IFTGFNSFLQGSESSPLKIGDGCVVMPHTIID 380 (496)
T ss_dssp --------CEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred --------cEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence 47888888774 4777777777777664
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=104.89 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=20.8
Q ss_pred eEECCCCEECCCcEEecC--------CCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 469 AIIDKNARIGDNVKIVNS--------DSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 469 ~ii~~~~~Ig~~~~i~~~--------~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++||++|.||.++.|.+. ..+++.+++|.++.| + ++||++++|++|++
T Consensus 231 v~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--G-VtIGd~~iIGAGSV 286 (347)
T 3r5d_A 231 VFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--G-IPLGDRNIVEAGLY 286 (347)
T ss_dssp CEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE--C-SCBCTTCEECTTCE
T ss_pred EEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE--e-eEECCCCEECCCCE
Confidence 444455555555444332 233333333333333 3 44555555555544
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=104.13 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEc
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~ 431 (520)
.++.||++|.|.+ +.|. ++.||++|.|+++|.|.
T Consensus 84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~ 121 (252)
T 3jqy_B 84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVV 121 (252)
T ss_dssp CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEE
T ss_pred CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEE
Confidence 3456666666666 5553 45666666666666665
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=99.33 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=14.4
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEc
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 431 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~ 431 (520)
+++|+++|+|+. ++.||++|.|+.+|.|.
T Consensus 117 g~~I~~~~~i~~----~~~IG~~~~I~~~~~I~ 145 (220)
T 4ea9_A 117 GVAVMAGVAINA----DSWIGDLAIINTGAVVD 145 (220)
T ss_dssp SCEECTTCEECT----TCEECTTCEECTTCEEC
T ss_pred CCEEcCCCEECC----CCEECCCCEECCCCEEC
Confidence 345555555553 34445555555555444
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-09 Score=100.84 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=28.4
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcccE
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 434 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~ 434 (520)
.++.||++|+|+. |.|. ...||++|.||++|.|....
T Consensus 75 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~ 115 (195)
T 3nz2_A 75 KTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTAS 115 (195)
T ss_dssp TTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEE
T ss_pred CCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCC
Confidence 4577888888886 7775 34889999999998887654
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-09 Score=105.21 Aligned_cols=139 Identities=17% Similarity=0.327 Sum_probs=66.9
Q ss_pred cceEEeCCC--HHHHHHhhhhcccCC-CCCCccccCCCcccc------CCCcCCCceeecccccceEECCCcEEeeeEEe
Q 010006 344 DGYWEDIGT--IEAFYNANLGITKKP-IPDFSFYDRSAPIYT------QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH 414 (520)
Q Consensus 344 ~g~w~dI~t--~~dy~~An~~~l~~~-~~~~~~~~~~~~i~~------~~~~~~~~~i~~~~i~~~~Ig~g~~I~~~~i~ 414 (520)
..+|.+.+. |++|......+.... .....+++.-..+.. .+++.|++.+. .++.||++|.|++
T Consensus 169 ~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~----~~a~IG~gv~Ig~---- 240 (387)
T 2rij_A 169 NVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVR----MGASLAAGTTIMP---- 240 (387)
T ss_dssp CEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBB----TTCBCCTTCEECS----
T ss_pred eeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEEC----CCeEEcCCCEEeC----
Confidence 468999998 778877776655221 122344444332211 22333333222 2344444444442
Q ss_pred e-eEECCCCE-ECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE----cc-----eEECCCCEECCCcEE
Q 010006 415 H-SVVGLRSC-ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI----KR-----AIIDKNARIGDNVKI 483 (520)
Q Consensus 415 ~-s~Ig~~~~-Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i----~~-----~ii~~~~~Ig~~~~i 483 (520)
+ ++|+.++. ||+ |.|+. . ++ ..+.||+++ .|+.++.| .+ ++||++|.||.+++
T Consensus 241 g~a~Ig~nv~vIG~-~~I~~-~-Ig---------~~vvIGdnv---~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv- 304 (387)
T 2rij_A 241 GASYVNFNAGTTGA-CMVEG-R-IS---------SSAIVGEGS---DVGGGASILGVLSGTSGNAISVGKACLLGANSV- 304 (387)
T ss_dssp SSCEECTTCEESSC-CEECS-E-EC---------TTCEECTTC---EECTTCEECCBCSSTTCCBCEECTTCEECTTCE-
T ss_pred CeeEECCCcEEECC-EEEee-E-EC---------CCCEECCCC---EECCCceEcceecCCCccCeEEeCCCEECCCCc-
Confidence 2 44454554 444 44432 1 11 234444444 45555542 22 56666666666665
Q ss_pred ecCCCcCCcccccCCeEEccCeEEEcCCCEe
Q 010006 484 VNSDSVQEAARETDGYFIKSGIVTIIKDALI 514 (520)
Q Consensus 484 ~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i 514 (520)
.++.+|++|+|++| ++|.+++.+
T Consensus 305 -------~GV~IGdgavIGAG-sVVt~dv~i 327 (387)
T 2rij_A 305 -------TGIPLGDNCIVDAG-IAVLEGTKF 327 (387)
T ss_dssp -------ECSCBCTTCEECTT-CEECTTCEE
T ss_pred -------CCcEECCCCEECCC-CEECCCcee
Confidence 23445555555555 445444444
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=102.55 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=17.7
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.+.||+++ .||.|+.| ++.||++|.||++++|..
T Consensus 233 ~V~IGDnv---~IGanAtI-gVtIGd~~iIGAGSVVtk 266 (332)
T 3fsy_A 233 VISIGKRC---LLGANSGL-GISLGDDCVVEAGLYVTA 266 (332)
T ss_dssp BCEECTTC---EECTTCEE-CSCBCSSCEECTTCEECT
T ss_pred ceEECCCC---EECCCCEE-eeEECCCCEECCCCEECC
Confidence 44555555 45555555 555555555555555544
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.56 Aligned_cols=59 Identities=10% Similarity=0.194 Sum_probs=29.9
Q ss_pred eCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 460 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 460 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
|+.++.|. +++|++++.|++++.|.+...+++.++++.++.|..+ ++||++++|++|++
T Consensus 116 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Igagsv 175 (194)
T 3bfp_A 116 LNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPN-LSLADDSILGGGAT 175 (194)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred ECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC-CEECCCCEECCCCE
Confidence 44444443 4555555555555555444445555555555555555 55555555555554
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-09 Score=102.17 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=11.0
Q ss_pred ceEECCCCEECCCcEEec
Q 010006 468 RAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~ 485 (520)
+++||++|.||.+|+|.+
T Consensus 119 ~v~IG~~v~IG~~a~I~~ 136 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMP 136 (220)
T ss_dssp CEEECSSCEECTTCEECT
T ss_pred CeEECCCcEECCCCEEeC
Confidence 455666666666666654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=107.85 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=57.7
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCcccccccc-ccccccCCCcceeeCCCCEEc--------
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK-------- 467 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~Ig~~~~i~-------- 467 (520)
++.+++++.|++ +.+. +++|+++|.||.+|.|+++++..++....... ..+.||+++ .||.++.+-
T Consensus 334 ~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v---~IG~g~i~~n~dg~~~~ 410 (501)
T 3st8_A 334 SSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYS---NIGASSVFVNYDGTSKR 410 (501)
T ss_dssp EEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSC---EECTTCEEECBCSSSBC
T ss_pred ccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCC---EECCCEEEEcccCCccc
Confidence 344555555555 5444 45555555555555555555544322211111 234455555 677777663
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 511 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~ 511 (520)
+++||++|.||.++.|.. ..+||++++|++| .+|.++
T Consensus 411 ~t~IGd~~~iG~~~~l~~------~v~Ig~~~~i~ag-s~v~~d 447 (501)
T 3st8_A 411 RTTVGSHVRTGSDTMFVA------PVTIGDGAYTGAG-TVVRED 447 (501)
T ss_dssp CEEECTTCEECTTCEEES------SEEECTTCEECTT-CEECSC
T ss_pred CCEECCCcEECCCCEEcC------CcEECCCCEECCC-CEECcc
Confidence 377777888877777765 4566667777777 554443
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=96.22 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=32.5
Q ss_pred CCcCCCceeecccccceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcccE
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 434 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~ 434 (520)
+.+.|+..+.- -.++.||++|+|+. |.|. ...||++|.||++|.|..+.
T Consensus 61 ~~i~~~~~~~~--g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~ 113 (199)
T 3ftt_A 61 VSISIPFDTDY--GWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTAT 113 (199)
T ss_dssp EEECSSEEESS--STTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEE
T ss_pred eEEeCCEEEEe--cCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCC
Confidence 34445544420 04577788887776 7774 36899999999999886553
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=94.11 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCcCCCceeecccc-cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcccE
Q 010006 383 QPRYLPPSKMLDADV-TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 434 (520)
Q Consensus 383 ~~~~~~~~~i~~~~i-~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~ 434 (520)
.+.+.|+..+. + .++.||++|+|+. |.|. ...||++|.|+++|.|.++.
T Consensus 64 ~~~I~~~~~~~---~g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~ 117 (190)
T 3hjj_A 64 KAQINPDFRCD---YGYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTAT 117 (190)
T ss_dssp CCEECSSCEES---SSTTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEE
T ss_pred CcEECCCEEEE---eCCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCC
Confidence 34445554432 1 3567777777776 6665 46789999999998887654
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=95.76 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEee---eEECCCCEECCCCEEccc
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~---s~Ig~~~~Ig~~~~I~~~ 433 (520)
..+.+.|+..+. .-.++.||++|+|+. |.|.+ ..||++|.||++|.|...
T Consensus 60 ~~~~I~~~~~~~--~g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 113 (203)
T 1krr_A 60 ENAWVEPPVYFS--YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT 113 (203)
T ss_dssp SSCEECSCEEES--CSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESE
T ss_pred CCcEEcCCeEEE--eCCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecC
Confidence 344555654331 015678899998887 77764 789999999999988654
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=94.88 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=31.9
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEee---eEECCCCEECCCCEEccc
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~---s~Ig~~~~Ig~~~~I~~~ 433 (520)
..+.+.|+..+.- -.++.||++++|+. |.|.+ ..||++|.||++|.|...
T Consensus 61 ~~~~I~~~~~~~~--g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~ 114 (188)
T 3srt_A 61 KQINVEQNIRCDY--GYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTA 114 (188)
T ss_dssp SCEEECSCEEESS--STTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECE
T ss_pred CCCEEcCCEEEEe--CCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeC
Confidence 3444555554420 03567777777776 66653 378888888888888543
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=102.05 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=30.2
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecC
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 486 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 486 (520)
+++||++|.||++|.|...+.+++ .+.+++++ .|+.++. ++++||+||.||.+++|.++
T Consensus 183 gvvIG~~~~IG~~v~I~~~vtIG~---------~~~ig~~~---~i~~~~~-~~~~IGd~v~IGaga~Ilgg 241 (313)
T 3q1x_A 183 GVVIGETAIIGEWCRIYQSVTLGA---------MHFQEEGG---VIKRGTK-RHPTVGDYVTIGTGAKVLGN 241 (313)
T ss_dssp TCEECTTCEECSSCEECTTCEEEC---------CCCCCTTC---CCCCCSS-CSCEECSSCEECTTCEEESS
T ss_pred ceEECCCcEECCCCEECCCcEEeC---------CcEECCCc---eEcCCCc-cCCEECCCCEECCCCEECCC
Confidence 466667777777766666555543 11222222 2222221 23466666666666666543
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=94.57 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=10.0
Q ss_pred ceEECCCCEECCCcEEec
Q 010006 468 RAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~ 485 (520)
+++||++|.||++|+|.+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECTTEEEES
T ss_pred CEEECCCCEEcCCEEEEC
Confidence 455555555555555554
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-08 Score=92.54 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.5
Q ss_pred eeCCCCEE
Q 010006 459 GIGKNSHI 466 (520)
Q Consensus 459 ~Ig~~~~i 466 (520)
.||++++|
T Consensus 104 ~Ig~~~~I 111 (195)
T 3nz2_A 104 LIGPSTQF 111 (195)
T ss_dssp EECTTCEE
T ss_pred EECCCCEE
Confidence 34444444
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=91.31 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=10.3
Q ss_pred eeEECCCCEECCCCEEcc
Q 010006 415 HSVVGLRSCISEGAIIED 432 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~ 432 (520)
++.||+++.|+.+|.|.+
T Consensus 78 ~v~IG~~~~I~~~~~i~~ 95 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILD 95 (190)
T ss_dssp TEEECTTCEECTTCEEEC
T ss_pred ceEECCceeeCCCeEEEe
Confidence 455666666666655543
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=100.75 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=55.0
Q ss_pred ceEECCCcEE--ee-eEEe-eeEECCCCEECCCCEEcccEEECC-ccccccccccccccCCCcceeeCCCCEEc-ceEEC
Q 010006 399 DSVIGEGCVI--KN-CKIH-HSVVGLRSCISEGAIIEDTLLMGA-DYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID 472 (520)
Q Consensus 399 ~~~Ig~g~~I--~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~ 472 (520)
++.||++++| +. +.|. ++.||++|.|+.+++|++....+. ........+.++||+++ .||.+++|. +++||
T Consensus 169 ~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v---~IGaga~Ilggv~IG 245 (313)
T 3q1x_A 169 GASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYV---TIGTGAKVLGNIIVG 245 (313)
T ss_dssp TCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSC---EECTTCEEESSCEEC
T ss_pred CCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCC---EECCCCEECCCcEEC
Confidence 3445555555 22 4554 799999999999999987554442 22223333556777777 677777765 67777
Q ss_pred CCCEECCCcEEec
Q 010006 473 KNARIGDNVKIVN 485 (520)
Q Consensus 473 ~~~~Ig~~~~i~~ 485 (520)
+||.||+|+++..
T Consensus 246 ~~a~IGagsvV~~ 258 (313)
T 3q1x_A 246 SHVRIGANCWIDR 258 (313)
T ss_dssp SSEEECTTCEECS
T ss_pred CCCEECCCCEECC
Confidence 7777777777754
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=102.83 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=50.3
Q ss_pred eEECCCcEEee------eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECC
Q 010006 400 SVIGEGCVIKN------CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 473 (520)
Q Consensus 400 ~~Ig~g~~I~~------~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 473 (520)
+.|.+++.|+. +.+.++.||++|.| ++|.|.++++.++ +.||+++.|.+|+|++
T Consensus 303 ~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~i~~ 362 (420)
T 3brk_X 303 AEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTG-------------------VRANSYSRLENAVVLP 362 (420)
T ss_dssp CCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTT-------------------CEECTTCEEEEEEECT
T ss_pred cccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCC-------------------CEECCCCEEcceEEcC
Confidence 44555555552 55557788888888 7777776666544 4899999999999999
Q ss_pred CCEECCCcEEec
Q 010006 474 NARIGDNVKIVN 485 (520)
Q Consensus 474 ~~~Ig~~~~i~~ 485 (520)
+|.||++|.|.+
T Consensus 363 ~~~i~~~~~i~~ 374 (420)
T 3brk_X 363 SVKIGRHAQLSN 374 (420)
T ss_dssp TCEECTTCEEEE
T ss_pred CCEECCCCEEec
Confidence 999999999974
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=104.78 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=63.7
Q ss_pred cceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCC---
Q 010006 398 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN--- 474 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~--- 474 (520)
.++.|+++++|.++.|.+++||++|.|+. |.|.++++.++ +.||+++.|.++++..+
T Consensus 313 ~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~~~~~~~ 372 (451)
T 1yp2_A 313 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDSLLMGADYY 372 (451)
T ss_dssp CCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT-------------------CEECTTCEEESCEECCCSSC
T ss_pred cCCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC-------------------CEECCCCEEcCceEECCCCc
Confidence 34666777777446666667777776664 66665555443 37888888876666555
Q ss_pred ----------------CEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCc
Q 010006 475 ----------------ARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 518 (520)
Q Consensus 475 ----------------~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gt 518 (520)
+.||+++.|.+ ..+++.+.+|+|+.|..+. .+||+++.|++|+
T Consensus 373 ~~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~ 436 (451)
T 1yp2_A 373 ETDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 436 (451)
T ss_dssp CCHHHHHHHHTTTCCCSEECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE
T ss_pred ccccccccccccCceeEEECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE
Confidence 78888888753 5666677777777776541 2556665555554
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.8e-08 Score=94.01 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=51.0
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||++|+|+.. .+++||++|.||++|.|..++.+++...+ ...+.++||+++ .||.+++|. +++||+||.||
T Consensus 171 a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~~~-~~~r~~~IGd~v---~IGaga~Il~gv~IG~~a~IG 244 (287)
T 3mc4_A 171 ARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTGKS-SGDRHPKIRQGV---LIGAGAKILGNIQVGQCSKIA 244 (287)
T ss_dssp CEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC------CCCSCEECTTC---EECTTCEEESSCEECTTCEEC
T ss_pred CEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCccc-CCCcCCEECCCC---EECCCCEECCCcEECCCCEEC
Confidence 445555555420 15677777777777777776666543211 122557788887 688888876 68888888888
Q ss_pred CCcEEec
Q 010006 479 DNVKIVN 485 (520)
Q Consensus 479 ~~~~i~~ 485 (520)
+++++..
T Consensus 245 agsvV~k 251 (287)
T 3mc4_A 245 AGSVVLK 251 (287)
T ss_dssp TTCEECS
T ss_pred CCCEEcc
Confidence 8888764
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-08 Score=95.89 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=5.6
Q ss_pred cceEECCCcEE
Q 010006 398 TDSVIGEGCVI 408 (520)
Q Consensus 398 ~~~~Ig~g~~I 408 (520)
.++.||++|+|
T Consensus 34 ~~v~IG~~t~i 44 (220)
T 4hur_A 34 ENILVGEYSYY 44 (220)
T ss_dssp TTEEECTTCEE
T ss_pred CCEEECCCeEE
Confidence 34555555554
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-08 Score=90.18 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=27.6
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.++.||++|+|+. |.|. ...||++|.|+++|.|...
T Consensus 71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 110 (182)
T 1ocx_A 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTA 110 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeC
Confidence 4577888888886 7664 4788888888888888643
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-08 Score=89.53 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.2
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEccc
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 433 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~ 433 (520)
.++.||++++|+. |.|. +..||++|.|+++|.|...
T Consensus 73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 112 (185)
T 2p2o_A 73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTA 112 (185)
T ss_dssp TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcC
Confidence 4577888888886 7663 5789999999999988654
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.9e-08 Score=93.61 Aligned_cols=80 Identities=29% Similarity=0.382 Sum_probs=49.1
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||++++|+.. .+++||++|.||++|+|..++.+++...+ ...+.++||+++ .||.+++|. +++||++|+||
T Consensus 144 a~IG~g~~I~~~--~~vvIG~~~~IG~~v~I~~gvtig~~~~~-~~~~~~~IGd~v---~IGaga~Il~gv~IG~~a~IG 217 (267)
T 1ssq_A 144 AKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKE-SGDRHPKVREGV---MIGAGAKILGNIEVGKYAKIG 217 (267)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSS-CSSCSCEECTTC---EECTTCEEESSCEECTTCEEC
T ss_pred CEECCCEEECCC--CceEECCeeEECCCCEEcCCcEECCCccc-CCCCCeEECCCe---EEcCCCEEeCCcEECCCCEEC
Confidence 455666665530 14567777777777777666666543211 112456677777 677777765 67777777777
Q ss_pred CCcEEec
Q 010006 479 DNVKIVN 485 (520)
Q Consensus 479 ~~~~i~~ 485 (520)
+++++..
T Consensus 218 agsvV~~ 224 (267)
T 1ssq_A 218 ANSVVLN 224 (267)
T ss_dssp TTCEECS
T ss_pred CCCEEcc
Confidence 7777753
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-08 Score=95.71 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=41.4
Q ss_pred cceEECCCcEEeeeEEeeeEEC--CCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE---cceEEC
Q 010006 398 TDSVIGEGCVIKNCKIHHSVVG--LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI---KRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~Ig--~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i---~~~ii~ 472 (520)
.++.|+++|.|+. ++.|+ .++.||++|+|++.+.++. | +.||.+... +.++||
T Consensus 163 ~gi~I~p~a~IG~----~v~I~hg~gvvIG~~~~IGd~v~I~~---------------g---vtIg~~~~~~~~r~~~IG 220 (287)
T 3mc4_A 163 FQTDIHPAARLGS----GLFLDHATGLVVGETAVVEDNVSILH---------------G---VTLGGTGKSSGDRHPKIR 220 (287)
T ss_dssp TCCEECTTCEECS----SCEEESCTTCEECTTCEECSSCEEET---------------T---CEEEC-----CCCSCEEC
T ss_pred cCeEECCCCEECC----CeEEccCCCeEECCCeEECCCCEEcC---------------C---CEEcCCcccCCCcCCEEC
Confidence 4567888888885 55555 6777887777776665442 1 133322111 236778
Q ss_pred CCCEECCCcEEecCC
Q 010006 473 KNARIGDNVKIVNSD 487 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~ 487 (520)
+||.||.+++|.++.
T Consensus 221 d~v~IGaga~Il~gv 235 (287)
T 3mc4_A 221 QGVLIGAGAKILGNI 235 (287)
T ss_dssp TTCEECTTCEEESSC
T ss_pred CCCEECCCCEECCCc
Confidence 888888887777543
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=86.69 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=8.8
Q ss_pred ccccCCCcceeeCCCCEEc
Q 010006 449 FLAAKGSVPIGIGKNSHIK 467 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~ 467 (520)
+.||+++ .||+++.|.
T Consensus 96 i~IG~~v---~Ig~~v~I~ 111 (203)
T 1krr_A 96 VTIGDNV---LIAPNVTLS 111 (203)
T ss_dssp EEECSSC---EECSSCEEE
T ss_pred eEECCCC---EECCCCEEe
Confidence 4445555 566666553
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=87.61 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=9.2
Q ss_pred eeEECCCCEECCCCEEc
Q 010006 415 HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~ 431 (520)
++.||++|.|+.+|.|.
T Consensus 74 ~~~IG~~~~I~~~~~i~ 90 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFM 90 (199)
T ss_dssp TEEECSSEEECTTEEEE
T ss_pred CcEECCCeEECCCeEEe
Confidence 45555555555555553
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=88.00 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=46.1
Q ss_pred ECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-------------
Q 010006 402 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK------------- 467 (520)
Q Consensus 402 Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~------------- 467 (520)
+++++.|.. . .+.+|.++.||+++.|...+.+.. ...+.||+++ .||+++.|.
T Consensus 57 ~g~~~~I~~p~---~~~~g~~v~IG~~~~i~~~~~i~~-------~~~i~IG~~v---~Ig~~v~I~~~~h~~~~~~~~~ 123 (185)
T 2p2o_A 57 TGERLFIEPNF---RCDYGYNIHVGENFFMNFDGVILD-------VCEVRIGDHC---FIGPGVHIYTATHPLDPHERNS 123 (185)
T ss_dssp CCSCEEECSCE---EESCSTTEEECTTEEECSSEEEEC-------SSCEEECTTC---EECTTCEEECEECCSSHHHHHT
T ss_pred cCCCcEEeccE---EEEecCCEEECCeeEEcCCeEEEe-------ccceEECCCc---EEeCCCEEEcCCCcCChhhccc
Confidence 566666664 2 234555666666666654433321 1345666666 678888773
Q ss_pred ------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 468 ------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 ------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.++||++|.||.+|+|.. ++++|++++|++|
T Consensus 124 ~~~~~~~v~IGd~v~IG~~~~I~~------gv~IG~~~vIgag 160 (185)
T 2p2o_A 124 GLEYGKPVVIGHNVWIGGRAVINP------GVTIGDNAVIASG 160 (185)
T ss_dssp CCBEECCEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CccccCCeEEcCCeEECCCCEECC------CCEECCCCEECCC
Confidence 345555555555555543 3455555555555
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-07 Score=95.12 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=44.4
Q ss_pred eEECCCcEEee-eEE--e-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 400 SVIGEGCVIKN-CKI--H-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 400 ~~Ig~g~~I~~-~~i--~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
+.|++++.|++ +.| . +++||++|.||++|.|...+.+++.-...+.. |. .+ ....+.++||+||
T Consensus 191 v~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~-------g~---~i--~~~~~~~~IGd~V 258 (310)
T 3f1x_A 191 IDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNN-------GN---PI--KGIPRHPILEDDV 258 (310)
T ss_dssp CEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------------------CCSCEECTTC
T ss_pred cEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccc-------cc---cc--cCCCCCCEECCCc
Confidence 44455555554 444 1 67888888888888887776665421100000 00 00 0112345777777
Q ss_pred EECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 476 RIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 476 ~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
.||+|++|.++ ++||+++.|++|
T Consensus 259 ~IGaga~Il~g------v~IGd~a~IGag 281 (310)
T 3f1x_A 259 IVYSNATILGR------VTIGKGATVGGN 281 (310)
T ss_dssp EECTTCEEESS------CEECTTCEECSS
T ss_pred EEcCCCEECCC------cEECCCCEECCC
Confidence 77777777643 334444444444
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-07 Score=84.62 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=25.8
Q ss_pred ECCCcEEee-eEE---eeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE
Q 010006 402 IGEGCVIKN-CKI---HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI 466 (520)
Q Consensus 402 Ig~g~~I~~-~~i---~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 466 (520)
+++++.|.. +.+ .++.||+++.|+.+|.|.+. ..+.||+++ .||+++.|
T Consensus 59 ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~-------------~~i~IG~~~---~Ig~~v~I 111 (188)
T 3srt_A 59 VGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDV-------------CKIEIGDNV---MLAPNVQI 111 (188)
T ss_dssp CCSCEEECSCEEESSSTTEEECTTEEECTTEEEECS-------------SCEEECSSC---EECTTCEE
T ss_pred cCCCCEEcCCEEEEeCCCeEECCcccccCceEEecC-------------CceEECCee---EECCCcEE
Confidence 455555554 332 14566666666666655432 223344455 67777777
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.6e-06 Score=87.95 Aligned_cols=353 Identities=13% Similarity=0.096 Sum_probs=178.6
Q ss_pred cccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC----CC-CeEEEEec-cChhHHHHHHHHhhh
Q 010006 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NI-SKIYVLTQ-FNSASLNRHLSRAYA 159 (520)
Q Consensus 86 ~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~----gi-~~I~Iv~~-~~~~~i~~~l~~~~~ 159 (520)
...++.+|+||||.||||+ ...||.++|+...+++++..++++... |. =..+|.+. ...+...++|++...
T Consensus 124 ~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~ 200 (528)
T 3r3i_A 124 VLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH 200 (528)
T ss_dssp TCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred hcCceEEEEeCCCCccccC---CCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence 3468999999999999997 468999999973459999999998764 42 24456665 456778888887432
Q ss_pred ccCCC-CcCCCeEEEeecc-cC----------CCCCCCc-cCcHHHHHH-----HHHHhhhcCcceEEEEeCceec-ccc
Q 010006 160 SNMGG-YKNEGFVEVLAAQ-QS----------PENPNWF-QGTADAVRQ-----YLWLFEEHNVLEFLVLAGDHLY-RMD 220 (520)
Q Consensus 160 ~~~~~-~~~~~~v~vl~~~-~~----------~~~~~~~-~Gt~~al~~-----~~~~l~~~~~~~~Lvl~gD~l~-~~d 220 (520)
++... .|.+..+..+... .- +....|. .|.++-... .++.+...+.+++.+...|.+. ..|
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vD 280 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccC
Confidence 22100 0011000001000 00 0111232 454332221 1233444567899999999954 444
Q ss_pred HHHHHHHHHhc----CCcEEEEEEecCcccCcceEEEEe-CCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCc
Q 010006 221 YERFIQAHRET----DADITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPY 295 (520)
Q Consensus 221 l~~ll~~h~~~----~a~~tl~~~~~~~~~~~~~g~v~~-d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (520)
.. ++..+..+ ++++.+-+.+....+ ..-|.++. |..-+++++.+-|...... .+ ....-.
T Consensus 281 p~-~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~~dGk~~vvEyseip~e~~~~----~~---------g~~~f~ 345 (528)
T 3r3i_A 281 LY-ILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQYEGKLRLVEIAQVPKAHVDE----FK---------SVSKFK 345 (528)
T ss_dssp HH-HHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEECSSSSCEEECTTSSCGGGTTT----SS---------CSSSCC
T ss_pred HH-HHHHHHhcccccCCcEEEEEeEccccC-CcccEEEEECCeEEEEEecCCChhHhhc----cC---------CcccCC
Confidence 32 55555555 777766555433222 23354443 3334567776666543211 00 011123
Q ss_pred eeeeeEEEEeHHHHHHHHhhhCCCCC--------C-----cc-ccchHhhhhCCceEEEEEec-ceEEeCCCHHHHHHhh
Q 010006 296 IASMGIYVISKDVMLNLLRDKFPGAN--------D-----FG-SEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNAN 360 (520)
Q Consensus 296 l~~~GIyifs~~vl~~ll~~~~~~~~--------~-----~~-~dil~~li~~~~~v~a~~~~-g~w~dI~t~~dy~~An 360 (520)
+.++...+|+-+.+.+++++...... + +. +-.+-.+++.-.+..++.+. ..+..+.+..|++...
T Consensus 346 ~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll~~ 425 (528)
T 3r3i_A 346 IFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVM 425 (528)
T ss_dssp CCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHHHH
T ss_pred eEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHHHh
Confidence 57889999999999988875321110 0 00 11111112111123334443 3488899999987665
Q ss_pred hhcccCCCCCCccccCCCccccC--CCcCCCceeecccccc--eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEE
Q 010006 361 LGITKKPIPDFSFYDRSAPIYTQ--PRYLPPSKMLDADVTD--SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~~~~i~~--~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~ 436 (520)
..+...... .-...+.....+. ....+. +. +|.+ .-+..--.|-+ ..+-.|--+++.|.++++.+.+++
T Consensus 426 Sdly~l~~g-~l~~~~~r~~~~~P~v~L~~~--~~--~v~~f~~rf~~iP~l~~--~~~LtV~Gdv~fg~~v~l~G~v~i 498 (528)
T 3r3i_A 426 SNLYSLNAG-SLTMSEKREFPTVPLVKLGSS--FT--KVQDYLRRFESIPDMLE--LDHLTVSGDVTFGKNVSLKGTVII 498 (528)
T ss_dssp STTSEEETT-EEECCSSCSSCCCCEEEECTT--SC--SHHHHHHHCSSCCEEEE--EEEEEEESEEECCTTCEEEEEEEE
T ss_pred cceeEeeCC-eEEecccccCCCCCEEEeCcc--cC--cHHHHHHhCCCCCCccc--CCEEEEecceEECCCcEEEEEEEE
Confidence 443221100 0111111101000 011111 11 1111 11111122222 124345555888888888888877
Q ss_pred CCccccccccccccccCCCcceeeCCCCEEcceEECCCCEE
Q 010006 437 GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 477 (520)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 477 (520)
-++ ...++.|.+++++++.+|--|.+|
T Consensus 499 ~~~--------------~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 499 IAN--------------HGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp ECC--------------TTCEEECCTTCEEEEEEEC-----
T ss_pred EcC--------------CCCceecCCCCEEeccEEeccccc
Confidence 431 223478999999999888766665
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-07 Score=84.37 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.5
Q ss_pred eeCCCCEE
Q 010006 459 GIGKNSHI 466 (520)
Q Consensus 459 ~Ig~~~~i 466 (520)
.|++++.|
T Consensus 100 ~Ig~~v~I 107 (182)
T 1ocx_A 100 MLAPGVHI 107 (182)
T ss_dssp EECTTCEE
T ss_pred EEeCCcEE
Confidence 34444444
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=93.02 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred eEECCCcEE--ee-eEEe-eeEECCCCEECCCCEEcccEEE-CCc-cccccccccccccCCCcceeeCCCCEEc-ceEEC
Q 010006 400 SVIGEGCVI--KN-CKIH-HSVVGLRSCISEGAIIEDTLLM-GAD-YYETDADRRFLAAKGSVPIGIGKNSHIK-RAIID 472 (520)
Q Consensus 400 ~~Ig~g~~I--~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~-~~~-~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~ 472 (520)
+.||++++| +. +.|. +++||++|.|+++|+|.+.... +.+ .......+.++||+++ .||.+++|. +++||
T Consensus 197 a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V---~IGaga~Il~gv~IG 273 (310)
T 3f1x_A 197 AQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDV---IVYSNATILGRVTIG 273 (310)
T ss_dssp CEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTC---EECTTCEEESSCEEC
T ss_pred CEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCc---EEcCCCEECCCcEEC
Confidence 344444444 22 4444 5778888888888888776521 110 0001123567888888 799999987 89999
Q ss_pred CCCEECCCcEEec
Q 010006 473 KNARIGDNVKIVN 485 (520)
Q Consensus 473 ~~~~Ig~~~~i~~ 485 (520)
+||.||+|+++..
T Consensus 274 d~a~IGagsvV~~ 286 (310)
T 3f1x_A 274 KGATVGGNIWVTE 286 (310)
T ss_dssp TTCEECSSCEECS
T ss_pred CCCEECCCCEECC
Confidence 9999999998863
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-07 Score=89.30 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=44.3
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
+.||++++|+.. .+++||++|.||++|.|..++.+++...+. ..+.++||+++ .||.++.|. +++||++|.||
T Consensus 164 a~IG~gv~I~~g--~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~-~~~~~~IGd~v---~IGaga~Ilggv~IG~~a~IG 237 (289)
T 1t3d_A 164 AKIGRGIMLDHA--TGIVVGETAVIENDVSILQSVTLGGTGKSG-GDRHPKIREGV---MIGAGAKILGNIEVGRGAKIG 237 (289)
T ss_dssp CEECSSCEECSC--TTCEECTTCEECSSCEECTTCEEECCSSSC-SSCSCEECTTC---EECTTCEEESSCEECTTCEEC
T ss_pred CEEcCCEEECCC--CceEECCCcEECCCCEEcCCcEECCCcccc-CCCCeEECCCe---EECCCCEEecCcEECCCCEEC
Confidence 445555555520 145666666666666666665555421111 12445666666 566666664 56666666666
Q ss_pred CCcEEe
Q 010006 479 DNVKIV 484 (520)
Q Consensus 479 ~~~~i~ 484 (520)
+|+++.
T Consensus 238 agsvV~ 243 (289)
T 1t3d_A 238 AGSVVL 243 (289)
T ss_dssp TTCEEC
T ss_pred CCCEEc
Confidence 666665
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.5e-08 Score=97.86 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=28.8
Q ss_pred EECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 417 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 417 ~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
.||.+|.||++|.|...+.+..... ......++||+++ .||.++. .++.||++|.||++++|..
T Consensus 260 ~Ig~~vvIGdnv~Ig~ga~I~g~l~-g~~~~~VvIGdnv---~IGagAv-~GV~IGdgavIGAGsVVt~ 323 (387)
T 2rij_A 260 RISSSAIVGEGSDVGGGASILGVLS-GTSGNAISVGKAC---LLGANSV-TGIPLGDNCIVDAGIAVLE 323 (387)
T ss_dssp EECTTCEECTTCEECTTCEECCBCS-STTCCBCEECTTC---EECTTCE-ECSCBCTTCEECTTCEECT
T ss_pred EECCCCEECCCCEECCCceEcceec-CCCccCeEEeCCC---EECCCCc-CCcEECCCCEECCCCEECC
Confidence 4555555555555554443221110 0011234455555 4555555 4555555555555555543
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-07 Score=90.01 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=23.8
Q ss_pred cceEE--EEeCceeccccHHHHHHHHHhcC
Q 010006 205 VLEFL--VLAGDHLYRMDYERFIQAHRETD 232 (520)
Q Consensus 205 ~~~~L--vl~gD~l~~~dl~~ll~~h~~~~ 232 (520)
.|++| ++++|+|...+|.+++.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 47888 99999999999999999987643
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=88.08 Aligned_cols=38 Identities=8% Similarity=0.012 Sum_probs=21.4
Q ss_pred cceEECCCcEEee----eEEee--------eEECCCCEECCCCEEcccEE
Q 010006 398 TDSVIGEGCVIKN----CKIHH--------SVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 398 ~~~~Ig~g~~I~~----~~i~~--------s~Ig~~~~Ig~~~~I~~~~i 435 (520)
.++.||++|+|+. ..+.+ +.++.++.||++|.|...+.
T Consensus 23 ~~v~IG~~t~I~~~~~~~~~~~~~~~i~~~~~i~~~v~IG~~~~I~~~v~ 72 (212)
T 3eev_A 23 PNIIVGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAV 72 (212)
T ss_dssp TTEEECSSCEECCGGGCSCGGGGEETCCSSCSSSCCEEECSSCEECTTCE
T ss_pred CCeEECCCeEEccccCccccccceeEECCCccccCCcEECCCCEECCCCE
Confidence 4566777777662 11111 22556667777777766663
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-07 Score=88.97 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=48.6
Q ss_pred cceEECCCcEEeeeEEeeeEEC--CCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCE---EcceEEC
Q 010006 398 TDSVIGEGCVIKNCKIHHSVVG--LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~Ig--~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~ 472 (520)
.++.|++++.|+. ++.|+ .++.||++|+|++.+.+.. ++ .||.... .++++||
T Consensus 156 ~g~~I~p~a~IG~----gv~I~~g~gvvIG~~~~IG~~v~I~~---------gv---------tLg~~~~~~~~~~~~IG 213 (289)
T 1t3d_A 156 FQVDIHPAAKIGR----GIMLDHATGIVVGETAVIENDVSILQ---------SV---------TLGGTGKSGGDRHPKIR 213 (289)
T ss_dssp HSCEECTTCEECS----SCEECSCTTCEECTTCEECSSCEECT---------TC---------EEECCSSSCSSCSCEEC
T ss_pred cceEEcCCCEEcC----CEEECCCCceEECCCcEECCCCEEcC---------Cc---------EECCCccccCCCCeEEC
Confidence 4678899998886 44555 5778888887777666553 22 2332211 1346778
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+||.||.+++|.++. +||+++.|++|
T Consensus 214 d~v~IGaga~Ilggv------~IG~~a~IGag 239 (289)
T 1t3d_A 214 EGVMIGAGAKILGNI------EVGRGAKIGAG 239 (289)
T ss_dssp TTCEECTTCEEESSC------EECTTCEECTT
T ss_pred CCeEECCCCEEecCc------EECCCCEECCC
Confidence 888888887776533 34444555555
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-07 Score=85.07 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.3
Q ss_pred eeEECCCCEECCCCEE
Q 010006 415 HSVVGLRSCISEGAII 430 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I 430 (520)
++.||++|.|+++|+|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 6677888888888776
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00082 Score=70.36 Aligned_cols=260 Identities=13% Similarity=0.082 Sum_probs=148.4
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC----CC-CeEEEEecc-ChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NI-SKIYVLTQF-NSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~----gi-~~I~Iv~~~-~~~~i~~~l~~~~~~~ 161 (520)
.++..|+||||.||||+ ..-||.++|+...+++++..++++... |. =..+|.+++ ..+...++|++...++
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fg 151 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLY 151 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCcccC
Confidence 47999999999999997 468999999954459999999988652 32 245677764 5678889998744343
Q ss_pred CCC----CcCCCeEEEeecccC---CCC----CCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceeccccHHHH
Q 010006 162 MGG----YKNEGFVEVLAAQQS---PEN----PNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERF 224 (520)
Q Consensus 162 ~~~----~~~~~~v~vl~~~~~---~~~----~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~l 224 (520)
+.. .|.+..+..+..... ..+ ..| +.|.++-.... ++.+...+.+++.+...|.+...-=-.+
T Consensus 152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~ 231 (484)
T 3gue_A 152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRL 231 (484)
T ss_dssp TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHH
T ss_pred CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHH
Confidence 311 112222222221110 000 113 24554432221 2334445678999999999665322446
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceEEEEeC---------CCC--CEEEeeeCCChhhhhhcccccccccCCchhhccC
Q 010006 225 IQAHRETDADITVAALPMDEKRATAFGLMKID---------EEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEM 293 (520)
Q Consensus 225 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d---------~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (520)
+..+.++++++.+-+.+....+ ..-|+++.. .+| +++++.+-|...... .. ...+
T Consensus 232 lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~-f~------------~~~g 297 (484)
T 3gue_A 232 LDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDS-FQ------------NIAK 297 (484)
T ss_dssp HHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHH-HT------------CTTT
T ss_pred HHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhh-hc------------CCCC
Confidence 7777888999887777754322 234433331 234 566777766543221 00 0011
Q ss_pred CceeeeeEEEEeHHHHHHHHhhh--CCCC-------------CCc-----cccchHhhhhCCceEEEEEec-ceEEeCCC
Q 010006 294 PYIASMGIYVISKDVMLNLLRDK--FPGA-------------NDF-----GSEVIPGATSIGMRVQAYLYD-GYWEDIGT 352 (520)
Q Consensus 294 ~~l~~~GIyifs~~vl~~ll~~~--~~~~-------------~~~-----~~dil~~li~~~~~v~a~~~~-g~w~dI~t 352 (520)
.-+.+++-.+++-..++++++.. .... .+. .+-.+-.++..-.+..++.+. ..+..+.+
T Consensus 298 ~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvKn 377 (484)
T 3gue_A 298 HCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKT 377 (484)
T ss_dssp SCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCSS
T ss_pred ceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhcccccc
Confidence 12448888899988887787653 1100 000 011222222222355566554 46888899
Q ss_pred HHHHHHhhhhcc
Q 010006 353 IEAFYNANLGIT 364 (520)
Q Consensus 353 ~~dy~~An~~~l 364 (520)
..|++.....+.
T Consensus 378 ~sdLl~~~Sdly 389 (484)
T 3gue_A 378 CSDLLALRSDAY 389 (484)
T ss_dssp HHHHHHHHSTTE
T ss_pred chHHHHHhhhce
Confidence 999887755443
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.3e-07 Score=84.06 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=47.7
Q ss_pred cceEECCCcEEee--------eEEe-eeEECCCCEECCCCEEcccEEECC---cccccccc-ccccccCCCc-ceeeCCC
Q 010006 398 TDSVIGEGCVIKN--------CKIH-HSVVGLRSCISEGAIIEDTLLMGA---DYYETDAD-RRFLAAKGSV-PIGIGKN 463 (520)
Q Consensus 398 ~~~~Ig~g~~I~~--------~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~---~~~~~~~~-~~~~~~~~~~-~~~Ig~~ 463 (520)
.++.||+.++|+. +.+. .++|+.++.||++|.|...+.+.. ++.-.... ..+.++++.. .+.+..+
T Consensus 33 ~~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~ 112 (219)
T 4e8l_A 33 ENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKD 112 (219)
T ss_dssp SSEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTT
T ss_pred CCEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCccccccccccc
Confidence 4577788888875 2232 233456667777777766655421 11000000 1112222210 0011112
Q ss_pred CEE-cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 464 SHI-KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 464 ~~i-~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
..+ .+++||++|.||.+++|.++ .++|++++|+++
T Consensus 113 ~~~~g~v~Igd~v~IG~~a~I~~g------v~IG~~~~Igag 148 (219)
T 4e8l_A 113 LPLKGDIEIGNDVWIGRDVTIMPG------VKIGDGAIIAAE 148 (219)
T ss_dssp SCCCCCEEECSSCEECTTCEECTT------CEECTTCEECTT
T ss_pred ccccCCcEECCCeEECCCCEEcCC------CEECCCCEECCC
Confidence 222 35777777777777777543 344445555555
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=82.99 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=12.5
Q ss_pred eeeEECCCCEECCCCEE
Q 010006 414 HHSVVGLRSCISEGAII 430 (520)
Q Consensus 414 ~~s~Ig~~~~Ig~~~~I 430 (520)
....||++|.|+++|+|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 35677888888887776
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=3e-06 Score=80.52 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=17.8
Q ss_pred CcEEee-eEEe-eeEECCCCEECCCCEEc
Q 010006 405 GCVIKN-CKIH-HSVVGLRSCISEGAIIE 431 (520)
Q Consensus 405 g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~ 431 (520)
+|++.. +.+. +..||++|.|+++|+|.
T Consensus 53 ~~vi~~~~~i~~~v~IG~~~~I~~gv~I~ 81 (219)
T 4e8l_A 53 DQVLYHYEVIGDKLIIGRFCSIGPGTTFI 81 (219)
T ss_dssp GGEESCCTTTCCCEEECSSCEECTTCEEE
T ss_pred ceEEeecceeCCCEEECCCCEEcCCCEEE
Confidence 344444 3333 67888888888888873
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=83.09 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=17.1
Q ss_pred ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 468 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+++||++|.||.++.|.+ ++++|++++|+++
T Consensus 113 ~v~Ig~~v~IG~~a~I~~------gv~Ig~~~~Igag 143 (209)
T 1mr7_A 113 DTIIGNDVWIGKDVVIMP------GVKIGDGAIVAAN 143 (209)
T ss_dssp CEEECSSCEECTTCEECT------TCEECTTCEECTT
T ss_pred CcEECCCCEEcCCCEEcC------CCEECCCCEEcCC
Confidence 466666666666666654 2344445555555
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-06 Score=78.35 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=24.1
Q ss_pred eeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe
Q 010006 458 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 505 (520)
Q Consensus 458 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~ 505 (520)
+.||+++.|. +++|..+++||++++|..++.+... +.+++++...+
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~P 160 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNP 160 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETT
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEeeC
Confidence 3555555554 5555555555555555555444432 34455554443
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.2e-05 Score=73.05 Aligned_cols=39 Identities=8% Similarity=-0.037 Sum_probs=26.2
Q ss_pred cceEECCCcEEee----eEEeeeEE--------CCCCEECCCCEEcccEEE
Q 010006 398 TDSVIGEGCVIKN----CKIHHSVV--------GLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 398 ~~~~Ig~g~~I~~----~~i~~s~I--------g~~~~Ig~~~~I~~~~i~ 436 (520)
.+..||++++|.+ +.+.++++ ...+.||++|.|...+.+
T Consensus 21 ~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 21 PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp TTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEE
T ss_pred CCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEE
Confidence 4567788777763 33334444 467889999999888654
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0059 Score=65.61 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=119.1
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecC---CccchhHHHHHHhHh-CCC-CeEEEEec-cChhHHHHHHHHhhhcc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN-SNI-SKIYVLTQ-FNSASLNRHLSRAYASN 161 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~---G~~plI~~~l~~l~~-~gi-~~I~Iv~~-~~~~~i~~~l~~~~~~~ 161 (520)
.++..|+||||.||||+ ...||.++|++ |+ +++++.++++.+ .|. =..+|.+. ...+...++|.+ |...
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 47999999999999998 46899999995 66 999999999976 342 23466665 456888999988 4321
Q ss_pred CC--CCcCCCeEEEeeccc------CCCCCCC-ccCcHHHHHH-----------------------HHHHhhhcCcceEE
Q 010006 162 MG--GYKNEGFVEVLAAQQ------SPENPNW-FQGTADAVRQ-----------------------YLWLFEEHNVLEFL 209 (520)
Q Consensus 162 ~~--~~~~~~~v~vl~~~~------~~~~~~~-~~Gt~~al~~-----------------------~~~~l~~~~~~~~L 209 (520)
-. ..|..+.+..+.... ......| +.|.++-... .++.+...+.+++.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 00 011111122221000 0001112 2455442222 23334444678899
Q ss_pred EEeCce-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEEEe--CCCCCE-----EEeeeCCChhhhhhcccccc
Q 010006 210 VLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGRI-----IEFSEKPKGEQLKAMKVDTT 281 (520)
Q Consensus 210 vl~gD~-l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g~V-----~~~~ekp~~~~~~~~~~~~~ 281 (520)
+...|. +...---.++..+.++++++.+-+.+.. +...-|.++. ..+|+. +++.|-+...... . +.
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~--p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~--~-~~- 341 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRV--PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRAL--N-KD- 341 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC--SSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECC--CCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhc--c-CC-
Confidence 999999 4343333467777888899877776643 2334454443 234544 4444332221100 0 00
Q ss_pred cccC-CchhhccCCceeeeeEEEEeHHHHHHHHhh
Q 010006 282 ILGL-DDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 282 ~~~~-~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (520)
-+. -........+..++..++|+-+.+.+.+..
T Consensus 342 -~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 342 -GGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp ----------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred -CccccccccccccccccceeeeEEHHHHHHHHHh
Confidence 000 000011223445899999998866555553
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0073 Score=56.39 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=70.3
Q ss_pred cceEEEEEe--CCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeE-EEEeccChhHHHHHHHHhhhccCCC
Q 010006 88 RSVLGIILG--GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGG 164 (520)
Q Consensus 88 ~~~~aIILA--aG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (520)
+.|.+||++ |...|||.|. ..+......++ |||+|+++.+..++++++ ++++++... . . + +
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~--~----~-~-~---- 65 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL--E----E-M-T---- 65 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC--S----S-C-C----
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH--H----h-h-c----
Confidence 358899999 7788888742 11111213345 999999999999999999 888875431 1 1 0 1
Q ss_pred CcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHH
Q 010006 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQ 226 (520)
Q Consensus 165 ~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~ 226 (520)
+ +.++. + + .|.++++..+...+ .+.++++.||+ ++.. .+..+++
T Consensus 66 --~---~~~v~--~----~---~gl~~sl~~a~~~~----~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 66 --E---ARVLL--D----E---KDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp --S---SEEEE--C----C---SCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred --C---CEEEE--C----C---CCHHHHHHHHHHhc----CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 1 22322 1 1 57888999887655 26899999999 5554 4777766
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=87.56 E-value=2.2 Score=40.46 Aligned_cols=89 Identities=3% Similarity=-0.084 Sum_probs=58.9
Q ss_pred cchhHHHHHHhHhCCCCeEEEEeccChhHHH--HHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHH
Q 010006 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLN--RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (520)
Q Consensus 121 ~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~--~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~ 198 (520)
.+|+.++++.+...+...++++++.....+. ..+.. ...+ +.. | |..|.+.++..+..
T Consensus 37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~-----------~~~~-~~~--q------~~~gLg~rl~~a~~ 96 (242)
T 3cgx_A 37 RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLG-----------PQHM-FAA--Q------QGLDLGERMKHAMQ 96 (242)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHC-----------TTSE-EEE--C------CSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhcc-----------CCcE-Eec--C------CCCCHHHHHHHHHH
Confidence 3899999999999988877777766554432 21111 0111 111 1 22678899999886
Q ss_pred HhhhcCcceEEEEeCce--eccccHHHHHHHHH
Q 010006 199 LFEEHNVLEFLVLAGDH--LYRMDYERFIQAHR 229 (520)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~ 229 (520)
.+-....+.++++.+|+ +...++.++++...
T Consensus 97 ~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 97 KAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 65322357899999999 44566888887654
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=86.39 E-value=5.6 Score=36.43 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred chhHHHHHHhHhCCCC--eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHH
Q 010006 122 RLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (520)
Q Consensus 122 plI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~ 199 (520)
..|...|+.+.+.... +|+||-....+...+.+.+... ....+.++.. .+ .|.+.+...++..
T Consensus 18 ~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~-------~~~~i~~i~~----~n----~G~~~a~N~g~~~ 82 (240)
T 3bcv_A 18 KYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA-------QYPNIKVIHK----KN----AGLGMACNSGLDV 82 (240)
T ss_dssp TTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH-------HCSSEEEEEC----CC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh-------hCCCEEEEEC----CC----CChHHHHHHHHHH
Confidence 5788888888765432 5666654333322222322110 0112555531 22 6888888888776
Q ss_pred hhhcCcceEEEEeCceecccc-HHHHHHHHHhcCCcEEE
Q 010006 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (520)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a~~tl 237 (520)
.. .+.++++..|.+...+ |..+++...+.+.++.+
T Consensus 83 a~---g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~ 118 (240)
T 3bcv_A 83 AT---GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF 118 (240)
T ss_dssp CC---SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred cC---CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence 54 4789999999987776 88888887766666543
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=25 Score=32.23 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=62.0
Q ss_pred eecCCccchhHHHHHHhHhCCCC--eEEEEeccChhHHHHHHHHhhhccCCCCcCCCeEEEeecccCC-----CCCCCcc
Q 010006 115 VPLGANYRLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP-----ENPNWFQ 187 (520)
Q Consensus 115 lpv~G~~plI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~-----~~~~~~~ 187 (520)
+|.-+....|..+|+.+.+.... +|+||-....+...+.+.+... ...+.++...... .+ .
T Consensus 7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--------~~~i~~i~~~~~~~~~~~~n----~ 74 (255)
T 1qg8_A 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--------DNRVRFYQSDISGVKERTEK----T 74 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--------STTEEEEECCCCSHHHHHSS----C
T ss_pred EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--------cCCEEEEecccccccccccc----c
Confidence 34433336888899988775433 5666665444555555554211 1224554332000 11 6
Q ss_pred CcHHHHHHHHHHhhhcCcceEEEEeCceecccc-HHHHHHHHHhc
Q 010006 188 GTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (520)
Q Consensus 188 Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (520)
|.+.+...++.... .+.++++.+|.+...+ +..+++...+.
T Consensus 75 G~~~a~N~gi~~a~---g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 75 RYAALINQAIEMAE---GEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp HHHHHHHHHHHHCC---CSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcC---CCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 77778777776554 4789999999987776 88888877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 520 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-97 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 7e-35 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 8e-31 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-26 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 3e-25 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 2e-19 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 1e-17 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 9e-12 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 3e-09 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 8e-09 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 2e-06 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 0.003 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 0.004 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 295 bits (755), Expect = 2e-97
Identities = 294/307 (95%), Positives = 306/307 (99%)
Query: 79 QTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK 138
QTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK
Sbjct: 1 QTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK 60
Query: 139 IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198
IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTADAVRQYLW
Sbjct: 61 IYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLW 120
Query: 199 LFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 258
LFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAFGLMKIDEE
Sbjct: 121 LFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 180
Query: 259 GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP 318
GRIIEF+EKP+GEQL+AMKVDTTILGLDD+RAKEMP+IASMGIYVISKDVMLNLLRDKFP
Sbjct: 181 GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP 240
Query: 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSA 378
GANDFGSEVIPGATS+GMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSA
Sbjct: 241 GANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSA 300
Query: 379 PIYTQPR 385
PIYTQPR
Sbjct: 301 PIYTQPR 307
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 125 bits (314), Expect = 7e-35
Identities = 126/135 (93%), Positives = 131/135 (97%)
Query: 386 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDA 445
YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 446 DRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI 505
DR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 506 VTIIKDALIPSGTII 520
VT+IKDALIPSG II
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 119 bits (299), Expect = 8e-31
Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRL+P T +K +P+ + +I P+S + + I +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVY-DKPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ L G + +++ A Q G A A LVL
Sbjct: 63 QQLL--------GDGSNWGLDLQYAVQ-----PSPDGLAQAFLIGESFIGNDL--SALVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ Y D+ + + + +V A + + +G+++ D+ G+ I EKP
Sbjct: 108 GDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEEKPL-- 163
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA--NDFGSEVIP 329
+ A G+Y + V +++ RD P ++V
Sbjct: 164 -------------------EPKSNYAVTGLYFYDQQV-VDIARDLKPSPRGELEITDVNR 203
Query: 330 GATSIG-MRVQAYLYDGYWEDIGTIEAFYNAN 360
G + V+ W D GT ++ A
Sbjct: 204 AYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 106 bits (267), Expect = 2e-26
Identities = 58/272 (21%), Positives = 97/272 (35%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GI+L GG+GTRLYP+T+ +K +P+ + +I P+S + + I I +++ L
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIY-DKPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
R L +G G Q+ P G ADA + V LVL
Sbjct: 65 RDL-------LGDGSQFGVRFSYRVQEEPR------GIADAFIVGKDFIGDSKV--ALVL 109
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ Y + ++ + + + + FG+++ D EGR+I EKP
Sbjct: 110 GDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDP--RPFGVVEFDSEGRVISIEEKPS-- 165
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVI 328
+ G+Y V + + R P + S
Sbjct: 166 -------------------RPKSNYVVPGLYFYDNQV-VEIARRIEPSDRGELEITSVNE 205
Query: 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
+RV+ W D GT + A+
Sbjct: 206 EYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 3e-25
Identities = 57/272 (20%), Positives = 96/272 (35%), Gaps = 43/272 (15%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
GIIL GG+GTRL+P+T+ +K +P+ + +I P+S + + I +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIY-DKPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ L +G G A Q SP+ G A A LVL
Sbjct: 63 QRL-------LGDGSEFGIQLEYAEQPSPD------GLAQAFIIGETFLNGEPS--CLVL 107
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
+ + + ++ TV + + FG+++ D+ R I EKPK
Sbjct: 108 GDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPE--RFGVVEFDDNFRAISLEEKPK-- 163
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN--DFGSEVIP 329
+ A G+Y V + + P + +
Sbjct: 164 -------------------QPKSNWAVTGLYFYDSKV-VEYAKQVKPSERGELEITSINQ 203
Query: 330 GATSIGMRVQAYLYDGY-WEDIGTIEAFYNAN 360
G L G+ W D GT ++ A+
Sbjct: 204 MYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 85.9 bits (211), Expect = 2e-19
Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 28/278 (10%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
+IL GG GTRL T + KP V +G ++ + I + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIG-GKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ + + + A+ + E + V
Sbjct: 64 EYFANYFLHMS---------------------DVTFHMAENRMEVHHKRVEPWNVTL-VD 101
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
GD + + + + D + G+ +
Sbjct: 102 TGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPG 161
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331
+ A+ + + E+ K + + G +V++ V+ + D + E +
Sbjct: 162 RFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQEPLMTL 217
Query: 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369
G + A+ + G+W+ + T+ K P
Sbjct: 218 AQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.3 bits (203), Expect = 1e-17
Identities = 45/369 (12%), Positives = 110/369 (29%), Gaps = 67/369 (18%)
Query: 67 VSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI 126
V P + ++ + L GG GT + K + + +D+
Sbjct: 52 VVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDL 108
Query: 127 PVSNCL------NSNISKIYVLTQFNSASLNRHLSRAYASNMGGY----------KNEGF 170
V + + + + ++ + + SN+ + + F
Sbjct: 109 IVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEF 168
Query: 171 VEVLAAQQSPENPNWFQGTADAVRQYLW-----LFEEHNVLEFLVLAGDHLYRMDYERFI 225
V + ++ + + G D + F V D+L + +
Sbjct: 169 VPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL 228
Query: 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGL 285
+ + + + P L+ + + +++E ++ P +
Sbjct: 229 KHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEH-------------V 275
Query: 286 DDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDG 345
++ ++ E I + ++ + L+ A+ E+IP + DG
Sbjct: 276 NEFKSIEKFKIFNTNNLWVNLKAIKKLVE-----ADALKMEIIPNPKEV---------DG 321
Query: 346 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPI-YTQPRYLP---PSKMLDADVTDSV 401
+ +E A F+D + + + R+LP S +L
Sbjct: 322 V--KVLQLETAAGAA----------IRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYT 369
Query: 402 IGEGCVIKN 410
+ +G V +N
Sbjct: 370 LVDGFVTRN 378
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 63.2 bits (152), Expect = 9e-12
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 41/264 (15%)
Query: 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
S IIL G GTR+ K + +++ + K + +
Sbjct: 1 SNFAIILAAGKGTRMKS---DLPKVLHKVA-GISMLEHVFRSVGAIQPEKTVTVVGHKAE 56
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL-WLFEEHNVLE 207
+ L+ Q + GT AV L
Sbjct: 57 LVEEVLAG--------------------QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTL 96
Query: 208 FLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEK 267
+ + + I H T+ D +G + ++ ++ E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVEQ 154
Query: 268 PKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327
K ++ G + + L + + ++V
Sbjct: 155 -KDATDFEKQIKEINTGTYVFDNERLFE-------------ALKNINTNNAQGEYYITDV 200
Query: 328 IPGATSIGMRVQAYLYDGYWEDIG 351
I G +V AY + E +G
Sbjct: 201 IGIFRETGEKVGAYTLKDFDESLG 224
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 55.1 bits (131), Expect = 3e-09
Identities = 25/275 (9%), Positives = 67/275 (24%), Gaps = 61/275 (22%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
IIL G GTRL PLT+ K V + LI+ + I+ I ++ +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVN-QKPLIEYQIEFLKEKGINDIIIIVGYLK---- 60
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
+ + E + + ++ V++
Sbjct: 61 -------------EQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDA--- 104
Query: 212 AGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGE 271
++L++ + + + + T + ++ ++ + K
Sbjct: 105 -DNYLFKNMFRNDLTRSTYF---------SVYREDCTNEWFLVYGDDYKVQDIIVDSK-- 152
Query: 272 QLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM------LNLLRDKFPGANDFGS 325
G+ ++ + +
Sbjct: 153 ----------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWD 190
Query: 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360
++ L +I +++ +
Sbjct: 191 NMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 54.6 bits (130), Expect = 8e-09
Identities = 49/284 (17%), Positives = 80/284 (28%), Gaps = 37/284 (13%)
Query: 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
+++ GG G RL+PL+++ R KP +PL L++ + + +L
Sbjct: 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR--- 59
Query: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEF 208
E A + TA AV + +
Sbjct: 60 ----------------RDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERL 103
Query: 209 LVLAGDHLYRMDY---ERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE----GRI 261
LVL DH D E + VA + T +G +++ R
Sbjct: 104 LVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRG 163
Query: 262 IEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321
F EKP + + ++ S L L
Sbjct: 164 EGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEE 223
Query: 322 DFGSEVIPGATSI-------GMRVQAYLYDGYWEDIGTIEAFYN 358
+ +P SI RV+ L W+D+G A
Sbjct: 224 VYAG--LP-KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 32/259 (12%), Positives = 67/259 (25%), Gaps = 42/259 (16%)
Query: 93 IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNR 152
+IL G GTR+Y K L ++ + + +++
Sbjct: 6 VILAAGKGTRMYS---DLPKVLHTLA-GKAMVQHVIDAANELGAAHVHL----------- 50
Query: 153 HLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLA 212
G + + + GT A++Q F + + L
Sbjct: 51 --------VYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLY-- 100
Query: 213 GDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQ 272
GD + I + + +D+ + + I+E +
Sbjct: 101 GDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDAT---- 156
Query: 273 LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGAT 332
D++R + + L L + + +++I A
Sbjct: 157 -------------DEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAY 203
Query: 333 SIGMRVQAYLYDGYWEDIG 351
G + A E G
Sbjct: 204 QEGREIVAVHPQRLSEVEG 222
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 36.6 bits (83), Expect = 0.003
Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 13/176 (7%)
Query: 352 TIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT---DSVIGEGCVI 408
T++ F N I + P+ ++ + SAP+ Y+ P + +VT + ++ I
Sbjct: 1 TVDEFSN----IRENPVTPWN-PEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASI 55
Query: 409 KNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 468
++ + VG RS + +G ++ + + + + + K + IG N +
Sbjct: 56 RSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE-YAVYIGNNVSLAH 114
Query: 469 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI----VTIIKDALIPSGTII 520
+ + + ++ + ++ VTI IP+G ++
Sbjct: 115 QSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVV 170
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 36.8 bits (84), Expect = 0.004
Identities = 32/228 (14%), Positives = 55/228 (24%), Gaps = 46/228 (20%)
Query: 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151
I+L GG +K VP +++ + + +S +YV
Sbjct: 5 AIVLAGGKEAWAERFG-VGSKALVPYR-GRPMVEWVLEALYAAGLSPVYVGENPGL---- 58
Query: 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVL 211
G + + Q L E LV
Sbjct: 59 ------------------------VPAPALTLPDRGGLLENLEQALEHVEGR----VLVA 90
Query: 212 AGDH--LYRMDYERFIQAHRETDADITVAALPMDEKR-----ATAFGLMKIDEEGRIIEF 264
GD L + E + E R T L + G +
Sbjct: 91 TGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLL 150
Query: 265 SEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNL 312
+K K + R + + +G V+ K ++ L
Sbjct: 151 LDKS-----LFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRL 193
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 99.97 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.95 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.9 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.87 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.7 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.64 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.61 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.46 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.45 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.41 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.4 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.39 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.36 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.33 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.31 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.28 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.2 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.2 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.18 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.17 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.13 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.12 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.1 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.09 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.09 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.05 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.04 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.03 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.99 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.96 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.92 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.88 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.88 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.86 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.81 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.77 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.74 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.74 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.73 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.71 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.63 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.6 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.47 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.36 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.34 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.27 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.25 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.05 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.95 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 97.93 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.5e-46 Score=376.91 Aligned_cols=306 Identities=96% Similarity=1.479 Sum_probs=266.4
Q ss_pred CCCCcccccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhh
Q 010006 80 TCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA 159 (520)
Q Consensus 80 ~~~~~~~~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~ 159 (520)
.|.+|++.+++.|||||||.||||+|||+.+|||||||+|++|||+|+|++|.++||++|+|+++++.+++.+|+.+.+.
T Consensus 2 ~~~~~~~~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~ 81 (307)
T d1yp2a2 2 TCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA 81 (307)
T ss_dssp CCCSSCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC
T ss_pred CccCCCcCCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccc
Confidence 46778888889999999999999999999999999999987799999999999999999999999999999999999887
Q ss_pred ccCCCCcCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEE
Q 010006 160 SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAA 239 (520)
Q Consensus 160 ~~~~~~~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~ 239 (520)
+.++.....+..+++...+.+.+++|..|++++++.++.++++...++|++++||++++.|+..+++.|+.+++++++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~ 161 (307)
T d1yp2a2 82 SNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 161 (307)
T ss_dssp --------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred cccccccccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEE
Confidence 76655556666777777777778889999999999999999877778999999999999999999999999999999888
Q ss_pred EecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC
Q 010006 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (520)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~ 319 (520)
.....++...||++.+|++++|..|.|||.......+..+...+.+.........++.++|+|+|++++|.++++...+.
T Consensus 162 ~~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~ 241 (307)
T d1yp2a2 162 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 241 (307)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EecccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcccc
Confidence 87777777899999999999999999999998877778888888887776667778999999999999999888877778
Q ss_pred CCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCCCCccccCCCccccCCC
Q 010006 320 ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR 385 (520)
Q Consensus 320 ~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~~~~~~~~~~~i~~~~~ 385 (520)
.+++..|+++.+++++.++++++++|+|.||||+++|++||..+++...+++.|++++.+|||.++
T Consensus 242 ~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 242 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred ccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 888999999999998999999999999999999999999999999988888899999999998753
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.3e-37 Score=304.09 Aligned_cols=233 Identities=24% Similarity=0.344 Sum_probs=193.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEecc-ChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++++ +.+.+.++++....++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~~~~g------ 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWG------ 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT------
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhccccccC------
Confidence 46999999999999999999999999999987 999999999999999999888874 5577778887754443
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
+++....| .|+.||++|+..+..++++ ++.|+++++|++++.|+.++++.|.+..+.+++++.++++ +
T Consensus 74 ---~~I~y~~q-----~~~~Gta~ai~~a~~~i~~--~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~--p 141 (292)
T d1fxoa_ 74 ---LDLQYAVQ-----PSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--P 141 (292)
T ss_dssp ---CEEEEEEC-----SSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--G
T ss_pred ---eEEEEccC-----CCCCcHHHHHHhhhhhcCC--CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCC--H
Confidence 23333233 2348999999999999974 3567888889999999999999999999999999998754 5
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC-CCC-ccc
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-AND-FGS 325 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~~-~~~ 325 (520)
.+||++.+|++|+++.|.|||..+. ++++.+|+|+|++++++ +++...+. +.+ ..+
T Consensus 142 ~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE~eit 199 (292)
T d1fxoa_ 142 ERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGELEIT 199 (292)
T ss_dssp GGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSCCHH
T ss_pred HHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCchhhH
Confidence 7999999999999999999998653 56999999999999987 55544443 333 358
Q ss_pred cchHhhhhCCceEEEEEec-c-eEEeCCCHHHHHHhhhhc
Q 010006 326 EVIPGATSIGMRVQAYLYD-G-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~-g-~w~dI~t~~dy~~An~~~ 363 (520)
|+++.+++ ..++.++.+. + +|+|+||+++|++|+..+
T Consensus 200 D~~~~~l~-~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v 238 (292)
T d1fxoa_ 200 DVNRAYLE-RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFI 238 (292)
T ss_dssp HHHHHHHH-TTCEEEEECCTTSEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEEeCCCCEEEeCCCHHHHHHHHHHH
Confidence 99999998 5677777774 3 599999999999998755
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-36 Score=295.77 Aligned_cols=232 Identities=23% Similarity=0.330 Sum_probs=188.2
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCcCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~~ 168 (520)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+||++|+|+++++.. .++++++++..++
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~g~~~g------- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFG------- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT-------
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCchHhhC-------
Confidence 7999999999999999999999999999987 999999999999999999999998765 4566776654443
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+....| .. ++||++|+..+.+++++ ++.+|++++|.++..++..+++.|.++..++|+++.+++ +++
T Consensus 74 --i~I~y~~Q--~~---plGta~Ai~~a~~fi~~--~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~--dP~ 142 (291)
T d1mc3a_ 74 --IQLEYAEQ--PS---PDGLAQAFIIGETFLNG--EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM--DPE 142 (291)
T ss_dssp --CEEEEEEC--SS---CCCSTHHHHHTHHHHTT--SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS--CCS
T ss_pred --cEEEEEEC--CC---CCchHHHHHHHHHHhCC--CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC--Ccc
Confidence 23333334 22 38999999999999974 234666777778899999999999998889999999875 478
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCCCcc-cc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFG-SE 326 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~~~~-~d 326 (520)
+||++.+|++|+|+.|.|||+.+. ++++.+|+|+|++++++ .+++..+ .+.+++ +|
T Consensus 143 ~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~EItd 200 (291)
T d1mc3a_ 143 RFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEITS 200 (291)
T ss_dssp SSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCHHH
T ss_pred cCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCceeehH
Confidence 999999999999999999998653 56999999999999997 4454444 334443 78
Q ss_pred chHhhhhCCceEEEEEec-c-eEEeCCCHHHHHHhhhhc
Q 010006 327 VIPGATSIGMRVQAYLYD-G-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 327 il~~li~~~~~v~a~~~~-g-~w~dI~t~~dy~~An~~~ 363 (520)
+++.+++ ..++..+.+. + +|+|+||+++|++|+..+
T Consensus 201 l~~~~l~-~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 201 INQMYLE-AGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHH-TTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHH-cCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 8888888 4565555553 4 699999999999998754
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.97 E-value=2.5e-31 Score=264.89 Aligned_cols=235 Identities=23% Similarity=0.326 Sum_probs=184.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChh-HHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 166 (520)
..|+|||||||.||||+|+|+..||||+||+|+ |||+|++++|..+|+++++|+++++.. .+.+++.+...++
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~~~~~----- 75 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFG----- 75 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT-----
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccchhcC-----
Confidence 358999999999999999999999999999987 999999999999999999999998764 4556665533221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
.. +.++. + . .+.||++|+..+..++++ ++.++++++|+++..++..++..|.+...++++++.+.+ +
T Consensus 76 -~~-i~~v~--e--~---~~~gta~Al~~a~~~l~~--~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~--~ 142 (295)
T d1lvwa_ 76 -VR-FSYRV--Q--E---EPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR--D 142 (295)
T ss_dssp -SE-EEEEE--C--S---SCCCGGGHHHHTHHHHTT--SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS--C
T ss_pred -CE-EEEEE--C--C---CCCCHHHHHHHHHHHcCC--CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC--C
Confidence 11 22221 2 1 138999999999998874 356778888889999999999999999999999988864 4
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC-CCC-Ccc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GAN-DFG 324 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~-~~~ 324 (520)
+.+||++.++++++|..|.|||..+. +.++++|+|+|++++|. ++.+... ... ...
T Consensus 143 ~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~~e~~~ 200 (295)
T d1lvwa_ 143 PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGELEI 200 (295)
T ss_dssp CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSCCCH
T ss_pred CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcCCCeec
Confidence 67899999998999999999998542 35889999999999987 4443332 222 233
Q ss_pred ccchHhhhhCC-ceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 325 SEVIPGATSIG-MRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 325 ~dil~~li~~~-~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
.++++.++..+ .+++.+..+.+|.|+||+++|.+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 201 TSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred cchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 67777777633 3555666667999999999999987654
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=3e-30 Score=253.37 Aligned_cols=238 Identities=21% Similarity=0.309 Sum_probs=172.1
Q ss_pred cceEEEEEeCCCCCCCCcc-ccCCCccceecCCccchhHHHHHHhHh-CCCCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 88 RSVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~Pl-T~~~pK~Llpv~G~~plI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
|++.|||||||.||||+|| |+.+||||+||.|++|||+|+++++.. .++++++|++++..+.+.++....
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~~-------- 72 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG-------- 72 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS--------
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhccc--------
Confidence 4577999999999999999 577899999986555999999999988 567899999998887765543221
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccH--HHHHHHH---HhcCCcEEEEEE
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDY--ERFIQAH---RETDADITVAAL 240 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl--~~ll~~h---~~~~a~~tl~~~ 240 (520)
+.++... . ..||+.++..++..+.....+.|+|++||++++.++ ...+..+ .+.+..+++...
T Consensus 73 -----~~ii~E~---~----~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 140 (268)
T d2cu2a2 73 -----IRLLLEP---L----GRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLR 140 (268)
T ss_dssp -----SEEEEES---S----CCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -----cceeeee---e----cCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecc
Confidence 1222211 1 278999999888666555678999999999988763 3344432 244555566555
Q ss_pred ecCcccCcceEEEEeCCCC----CEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhh
Q 010006 241 PMDEKRATAFGLMKIDEEG----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~ 316 (520)
+ .++++.||++..++++ +|..|.|||.......+. ...+++++|+|+|++++|.+.+++.
T Consensus 141 ~--~~~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~--------------~~~~~~N~Giy~f~~~~l~~~~~~~ 204 (268)
T d2cu2a2 141 P--TRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI--------------RKGYVWNGGVFAFAPATMAELFRRH 204 (268)
T ss_dssp C--SSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH--------------HTTCEEEEEEEEECHHHHHHHHHHH
T ss_pred c--cccccccceEEeccccccchhhheeecccchhhhhhhh--------------ccCcccchhhhhcchHHHHHHHHhh
Confidence 5 4457899999987543 799999999987654321 2357999999999999887766655
Q ss_pred CCC---------CCCccccchHh---------hhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 317 FPG---------ANDFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 317 ~~~---------~~~~~~dil~~---------li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
.+. ......+.++. +++...++.+++++++|.||||.+++++...
T Consensus 205 ~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~~ 267 (268)
T d2cu2a2 205 LPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (268)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred hHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHhc
Confidence 442 11112233322 2344678999999999999999999988653
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.5e-29 Score=244.90 Aligned_cols=240 Identities=20% Similarity=0.265 Sum_probs=175.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc-
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK- 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~- 166 (520)
|..+|||||||.||||+|+|+..||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+.+.+......
T Consensus 1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 357999999999999999999999999999987 999999999999999999999999999999999875543211000
Q ss_pred -------------CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCC
Q 010006 167 -------------NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDA 233 (520)
Q Consensus 167 -------------~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a 233 (520)
....+.++... -..++.+++..+...+.. .++|+++.+|.+++.++..+++.|.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTG-------DSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGK 150 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECC-------SSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCC
T ss_pred hccccchhhhccccccceeEEecc-------ccccccchhhhhhhhccC--CCceEEeccccccccchhhhhhhhccccc
Confidence 01112222111 136788888877765543 47799999999999999999999988888
Q ss_pred cEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHH
Q 010006 234 DITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (520)
Q Consensus 234 ~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (520)
..+..... +...++.+... ..++..+.+.+... +++..+|+|+++++++. .+
T Consensus 151 ~~~~~~~~----~~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~~-~i 202 (259)
T d1tzfa_ 151 KATLTATF----PPGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LI 202 (259)
T ss_dssp SEEEEEEC----CCCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GC
T ss_pred ceeecccc----ccccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhhh-hc
Confidence 87766654 23455555443 45676666555432 35788999999998765 32
Q ss_pred hhhCCCCCCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcccCCCC
Q 010006 314 RDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (520)
Q Consensus 314 ~~~~~~~~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l~~~~~ 369 (520)
. .....+..++++.+++ ..+++++.++|+|.||||++||..++..+.+...|
T Consensus 203 ~---~~~~~~~~~~l~~l~~-~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~ 254 (259)
T d1tzfa_ 203 D---NDATTWEQEPLMTLAQ-QGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp C---STTCCTTTHHHHHHHH-TTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred c---cCcCccHHHHHHHHHh-cCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCC
Confidence 2 2344566889999998 55999999999999999999999999888776534
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=1.5e-27 Score=227.08 Aligned_cols=220 Identities=14% Similarity=0.174 Sum_probs=159.2
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|..+|+++|+|+++|..+++ +++.+.++
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~~-------- 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKYG-------- 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHHC--------
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhcc--------
Confidence 679999999999999999999999999999987 99999999999999999999999988887 45555442
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 247 (520)
++++...+ ....|++++++.+.+.++ ++|+++++|.+++..+...+ ....++..... +.
T Consensus 72 ---i~i~~~~~-----~~~~Gt~~sl~~a~~~l~----~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~--~~ 130 (229)
T d1jyka_ 72 ---VRLVFNDK-----YADYNNFYSLYLVKEELA----NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYRE--DC 130 (229)
T ss_dssp ---CEEEECTT-----TTTSCTHHHHHTTGGGCT----TEEEEETTEEESSCCCCSCC-------CSEEEEECEES--SC
T ss_pred ---cccccccc-----ccccccccccccchhhhc----ccccccccccccccchhhhh-------hccccceeeee--ec
Confidence 22322211 123899999998877664 57877777767665433221 11223332222 34
Q ss_pred cceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHH---hhhC---CCCC
Q 010006 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKF---PGAN 321 (520)
Q Consensus 248 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll---~~~~---~~~~ 321 (520)
..++.+..+++++|..+.++|... +..+|+|+|++.....+. +... ...+
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (229)
T d1jyka_ 131 TNEWFLVYGDDYKVQDIIVDSKAG------------------------RILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186 (229)
T ss_dssp SSCCEEEECTTCBEEEEECCCSSE------------------------EBCCSEEEECHHHHHHHHHHHHHHHTTTCCTT
T ss_pred cccceeEEccCCceeeEEEecccc------------------------eEEEEEEEEcHHHHHHHHHHHHHhhcccccch
Confidence 567788888899999999887632 567899999987654332 2221 1122
Q ss_pred CccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhc
Q 010006 322 DFGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 322 ~~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~ 363 (520)
.+..+++...++ ..+++++.+++ .|++|+|++||..|+..+
T Consensus 187 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 187 LYWDNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CCTTHHHHTTGG-GCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 334556666666 67889888876 599999999999997653
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=1.3e-25 Score=215.35 Aligned_cols=232 Identities=16% Similarity=0.186 Sum_probs=179.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
-.|||||||.||||+| .+||||+||+|+ |||+|+++.|.++|+++++|++++..+.+..+.....
T Consensus 2 ~~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~----------- 66 (250)
T d1g97a2 2 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQT----------- 66 (250)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTS-----------
T ss_pred cEEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhccccc-----------
Confidence 3799999999999998 579999999987 9999999999999999999999999887766654411
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
...... . ..|+.+++..++..++....+.+++..+|.++. .++.++++.|.+....+++...+.. ...
T Consensus 67 -~~~~~~-----~---~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~ 135 (250)
T d1g97a2 67 -EFVTQS-----E---QLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD--NPF 135 (250)
T ss_dssp -EEEECS-----S---CCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS--CCT
T ss_pred -cccccc-----c---ccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceec--ccC
Confidence 111111 1 278999999998888764445555666665555 5699999999999999888887754 356
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCC---CCCCccc
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGS 325 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~~~~~ 325 (520)
.|+.+..++++.+..+.+++...... ...++..+|+|+|+...|...+..... ....+..
T Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~ 198 (250)
T d1g97a2 136 GYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYIT 198 (250)
T ss_dssp TSCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGG
T ss_pred CCceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhhHHHh
Confidence 78888888888999998877643221 123588999999999888777654222 2344568
Q ss_pred cchHhhhhCCceEEEEEecceEEe--CCCHHHHHHhhhhcc
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWED--IGTIEAFYNANLGIT 364 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~d--I~t~~dy~~An~~~l 364 (520)
++++.+++.+.+|.++.++++|.+ |+|++|+..|+..+.
T Consensus 199 ~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~ 239 (250)
T d1g97a2 199 DVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMR 239 (250)
T ss_dssp GHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHH
Confidence 899999988899999999999976 789999988877654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.9e-23 Score=198.28 Aligned_cols=229 Identities=17% Similarity=0.198 Sum_probs=160.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (520)
.|++||||||.||||+| .+||||+||+|+ |||+|+|+.|...|+++|+|++++..+.+..+..+.
T Consensus 2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~----------- 66 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDD----------- 66 (248)
T ss_dssp CEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCT-----------
T ss_pred CceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeecccc-----------
Confidence 58999999999999997 589999999997 999999999999999999999999988876654331
Q ss_pred CeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCceecccc--HHHHHHHHHhcCCcEEEEEEecCccc
Q 010006 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKR 246 (520)
Q Consensus 169 ~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d--l~~ll~~h~~~~a~~tl~~~~~~~~~ 246 (520)
....+... ...|+++++..+..++.. ..+++++.+|..+... +..+.. ........++..+.. +
T Consensus 67 ~~~~~~~~--------~~~g~~~~~~~~~~~i~~--~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~ 132 (248)
T d2oi6a2 67 NLNWVLQA--------EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRD--AKPQGGIGLLTVKLD--D 132 (248)
T ss_dssp TEEEEECS--------SCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHH--HCCTTSEEEEEEECS--C
T ss_pred cccccccc--------cCcccHHHHHhhhhhhcc--ccceeeecCccccccchhHHHHHH--HhhccccceeEEEec--C
Confidence 11222211 137999999999877754 4678888888865432 333322 223344445555433 3
Q ss_pred CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCC--C-CCc
Q 010006 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--A-NDF 323 (520)
Q Consensus 247 ~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~-~~~ 323 (520)
+..++.+..+ ++....+.+++...... ....+..+|.|.|+.+.|.+.+...... . ..+
T Consensus 133 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ 194 (248)
T d2oi6a2 133 PTGYGRITRE-NGKVTGIVEHKDATDEQ-----------------RQIQEINTGILIANGADMKRWLAKLTNNNAQGEYY 194 (248)
T ss_dssp CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCC
T ss_pred Cccccccccc-cCccceeeeccCCChhh-----------------hhhhhhhhhhhccchHHHHHHHHHhhccccchhhh
Confidence 5566666654 45555554332211110 1134778999999998887766543221 2 223
Q ss_pred cccchHhhhhCCceEEEEEecceEE--eCCCHHHHHHhhhhcc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWE--DIGTIEAFYNANLGIT 364 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~--dI~t~~dy~~An~~~l 364 (520)
.+++++.+++.|.+|.++..+++|. .|+|++||..|...+.
T Consensus 195 ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~ 237 (248)
T d2oi6a2 195 ITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ 237 (248)
T ss_dssp TTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHH
Confidence 5788999999899999999988874 4889999998887553
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.87 E-value=8e-22 Score=172.77 Aligned_cols=132 Identities=88% Similarity=1.285 Sum_probs=119.7
Q ss_pred cCCCceeecccccceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCcccccccc---ccccccCCCcceeeCC
Q 010006 386 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD---RRFLAAKGSVPIGIGK 462 (520)
Q Consensus 386 ~~~~~~i~~~~i~~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~Ig~ 462 (520)
|+||+++.++.+.+++|++||+|+++.|.+|+||++|+||++|.|+++++++++++....+ ..+.+++++ .||+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v---~Ig~ 77 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPI---GIGK 77 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCS---EECT
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCC---EECc
Confidence 6899999999999999999999988888999999999999999999999999987654333 334455555 8999
Q ss_pred CCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 463 NSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 463 ~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+|+|++++|++||+||++|++.+...+.+..+++++++|.+|.++|++|++||+|++|
T Consensus 78 ~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 78 NCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp TCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999999999999999999999998999999999999997
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.2e-16 Score=149.07 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=140.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|++.|||||||.||||. .+.||+|+|++|+ |||+|+|+.+.++ ++++|+|+++++.+.+...+...+
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 57899999999999998 4789999999987 9999999999887 689999999876655443332211
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
..+.+.... .+..++++.++..+.+ .+.++++.+|. ++.. ++..+++....... ..+...+..+
T Consensus 70 --~~v~~~~~~---------~~~~~sv~~~~~~~~~--~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~-~~v~~~~~~d 135 (225)
T d1i52a_ 70 --PQITVVDGG---------DERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRT-GGILAAPVRD 135 (225)
T ss_dssp --TTEEEEECC---------SSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSS-CEEEEEECCS
T ss_pred --cccccccCC---------cchhHHHHhhhcccCc--cceeeeeccCCCCCCHHHHHHHHhhhhhccc-ccccccceee
Confidence 113322111 3466899988887764 46788888987 4444 46666666654443 3444444322
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
... .....++......++.. .....+.+.|..+.+...++...... ...
T Consensus 136 --~~~---~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~-~~~ 184 (225)
T d1i52a_ 136 --TMK---RAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEG-ATI 184 (225)
T ss_dssp --CEE---EECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTT-CCC
T ss_pred --ccc---hhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcC-CCC
Confidence 111 11222333333222111 13344677888887776665433222 234
Q ss_pred ccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
+|....+...|.+++.+..+..-+.|+||+|+..|+..+
T Consensus 185 tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 185 TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 666666666688888877553346699999999887654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=4.4e-15 Score=139.86 Aligned_cols=209 Identities=17% Similarity=0.245 Sum_probs=133.6
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCCe
Q 010006 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (520)
Q Consensus 92 aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (520)
|||||||.||||+ ...||+|++|+|+ |||+|+|+.+..+ ++++|+|+++...... +.... .....
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~~~---~~~~~-------~~~~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VEKRV-------FHEKV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HHTTC-------CCTTE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhhhH---HHhhh-------ccccc
Confidence 8999999999997 4689999999997 9999999999986 5899999986544322 22211 11122
Q ss_pred EEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 010006 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRAT 248 (520)
Q Consensus 171 v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 248 (520)
+.+.... .+...++..++..+.....+.++++.||. +... .+..+++.+.+.... +...+..
T Consensus 72 ~~~~~~~---------~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~--~~~~~~~----- 135 (221)
T d1vpaa_ 72 LGIVEGG---------DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA--TLALKNS----- 135 (221)
T ss_dssp EEEEECC---------SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE--EEEEECC-----
T ss_pred ccccccc---------ccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc--ccccccc-----
Confidence 3332211 23556777777666655678899999998 4454 488888887765432 2333221
Q ss_pred ceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccccch
Q 010006 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (520)
Q Consensus 249 ~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~dil 328 (520)
+. +...+ +++...+ +.. ..+...+-+.|..+.+....+. ..++ .|.+
T Consensus 136 d~-~~~~~-~~~~~~~---~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~----~~~~-tD~~ 182 (221)
T d1vpaa_ 136 DA-LVRVE-NDRIEYI---PRK-----------------------GVYRILTPQAFSYEILKKAHEN----GGEW-ADDT 182 (221)
T ss_dssp SE-EEEEE-TTEEEEE---CCT-----------------------TEEEEEEEEEEEHHHHHHHHTT----CCCC-SSSH
T ss_pred ce-eEeec-Cccceec---chH-----------------------HHHHhhhhhhhhHHHHHHHHHh----CCCC-ccHH
Confidence 11 22221 2222222 111 1255667788888888766542 2222 5556
Q ss_pred HhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 329 ~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
..+...+.++..+..+...+.|+|++|+..|...+
T Consensus 183 ~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~ll 217 (221)
T d1vpaa_ 183 EPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA 217 (221)
T ss_dssp HHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred HHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHH
Confidence 66666688888877655556799999998887544
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.63 E-value=1.5e-15 Score=143.77 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=129.1
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
.+++.+||||||.||||. ...||+|++++|+ |||+|+|+.+.++. +++|+|++++...++.+.+...+
T Consensus 2 ~k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~------- 70 (226)
T d1w77a1 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI------- 70 (226)
T ss_dssp TTCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSC-------
T ss_pred CCceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhcccccc-------
Confidence 356899999999999998 4689999999997 99999999999874 78898888755444333222211
Q ss_pred cCCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 010006 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (520)
Q Consensus 166 ~~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~ 243 (520)
. ..+.+... + ....++++.++..+.. ..+.++++.||. +.+.+ +..+++.+.+.+..+ ...+..
T Consensus 71 -~-~~~~~~~g-----g----~~r~~sv~~~l~~~~~-~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i--~~~~~~ 136 (226)
T d1w77a1 71 -D-VDLRFAIP-----G----KERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAV--LGVPAK 136 (226)
T ss_dssp -S-SEEEEECC-----C----SSHHHHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEE--EEEECC
T ss_pred -c-cccccccc-----c----chhhhhhhhhHhhhcc-ccccceecccccccccHHHhhhhhhhhhccCcee--eccccc
Confidence 1 11222211 1 1246889988877653 357889999998 55544 888888877665433 222221
Q ss_pred cccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCc
Q 010006 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (520)
Q Consensus 244 ~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~ 323 (520)
+ ...+ ...++.+... +.. ...+...+.+.|+.+.|.+.++....+...+
T Consensus 137 d--~~~~----~~~~~~~~~~---~~r----------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~ 185 (226)
T d1w77a1 137 A--TIKE----VNSDSLVVKT---LDR----------------------KTLWEMQTPQVIKPELLKKGFELVKSEGLEV 185 (226)
T ss_dssp S--CCCC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSCCCC
T ss_pred c--ceEE----EccCCceeec---ccc----------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcCCCc
Confidence 1 1111 1112222111 100 0124455778999888877665432222222
Q ss_pred cccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhc
Q 010006 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 324 ~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~ 363 (520)
+|....+...|.++..+..+..-+.|+||+|+..|...+
T Consensus 186 -TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 186 -TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp -CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred -CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 443333444488888776654456799999999997654
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.61 E-value=2e-14 Score=135.88 Aligned_cols=216 Identities=14% Similarity=0.177 Sum_probs=126.0
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++..|||||||.||||. ...||+|++|+|+ |||+|+++.+.+++ +++|+||+..+ +.+.+++...+..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~~------ 70 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFPQ------ 70 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCTT------
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccccc------
Confidence 35679999999999997 5689999999987 99999999999876 57777776544 4445555553321
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhh----cCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEE
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE----HNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAAL 240 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~----~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~ 240 (520)
.+.+.. .+ ....+++..++..+.. ...+.++++.||. +++.+ +..+++.+...+...++ ..
T Consensus 71 ---~~~~~~-----g~----~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~ 137 (226)
T d1vgwa_ 71 ---VRVWKN-----GG----QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AV 137 (226)
T ss_dssp ---SEEECC-----CC----SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EE
T ss_pred ---eeeccc-----cc----cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee-cc
Confidence 122211 01 1234555555544432 2356788889998 55544 88899888777666543 33
Q ss_pred ecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 010006 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (520)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (520)
+... ..... +++.+....++... +....-..|..+.|.+.+... ..
T Consensus 138 ~~~~------~~~~~-~~~~i~~~~~r~~~-------------------------~~~~~p~~f~~~~l~~~~~~~--~~ 183 (226)
T d1vgwa_ 138 PVAD------TLKRA-ESGQISATVDRSGL-------------------------WQAQTPQLFQAGLLHRALAAE--NL 183 (226)
T ss_dssp ECCS------CEEEE-SSSBEEEEECCTTE-------------------------EEEEEEEEEEHHHHHHHHHC-----
T ss_pred cccc------cceec-cCCeEEeccchHHH-------------------------HHHHhhhcccHHHHHHHHHHh--hc
Confidence 3221 12222 45777665543322 112234567777776665431 22
Q ss_pred CCccccchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhh
Q 010006 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (520)
Q Consensus 321 ~~~~~dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~ 362 (520)
.++ .|....+.+.+.++..+.-+...+.|+||+|+..|...
T Consensus 184 ~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 184 GGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp -CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 222 45455555558888877766556789999999988654
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.46 E-value=1.5e-13 Score=132.77 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=54.7
Q ss_pred eeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEEcCCCEeCCCccC
Q 010006 458 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 520 (520)
Q Consensus 458 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~Ig~~~~i~~gtvi 520 (520)
+.||+++.|. ++.|+++|.||++|.+.+.+.+.+.+++|++++|+.+. ++||++++|++||+|
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V 177 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV 177 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence 5788888887 79999999999999999999999999999999998873 668888888888864
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.45 E-value=5.1e-12 Score=120.09 Aligned_cols=236 Identities=15% Similarity=0.149 Sum_probs=147.8
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
..|||+|.|.++|+. -|+|.+|+|+ |||+|+++.+.++++++|+|.+ +++++.++..+ +.. .
T Consensus 2 ~i~iIpAR~gSkrip------~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsT--d~~~i~~~~~~-~g~--------~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVAT--DHEDVARAVEA-AGG--------E 63 (246)
T ss_dssp CEEEEECCCCCC--C------CTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHH-TTC--------E
T ss_pred EEEEEecCCCCcCCC------CchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEe--cCccccchhhc-ccc--------c
Confidence 469999999999985 3999999997 9999999999999999999998 56667666655 211 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-cc-ccHHHHHHHHHhcCCcEEEEEEecCccc-
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YR-MDYERFIQAHRETDADITVAALPMDEKR- 246 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~- 246 (520)
+..... .. ..|+ +.+..+.........+.++.+.||.. .+ .++..+++.+.....+....+.+.....
T Consensus 64 -v~~~~~----~~---~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 134 (246)
T d1vh1a_ 64 -VCMTRA----DH---QSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEE 134 (246)
T ss_dssp -EEECC------------CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHH
T ss_pred -ceeecc----cc---cccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhc
Confidence 222211 11 1344 44444444443334567889999994 44 3588888888888877666665543211
Q ss_pred --CcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 247 --ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 247 --~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
......+..+.+|++..|...+......... .........++...|+|+|+++.|...... .+...+-.
T Consensus 135 ~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~~E~~ 205 (246)
T d1vh1a_ 135 AFNPNAVKVVLDAEGYALYFSRATIPWDRDRFA--------EGLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHI 205 (246)
T ss_dssp HTCTTSCEEEECTTSBEEEEESSCSSCCHHHHS--------SCCCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH
T ss_pred ccCCCcceeeecccCcccccccccchhhhhhhh--------hhhhccchhhheecceeeechhhhhhhccC-CCChHHHH
Confidence 1122234567789988887655432211100 000011234677899999999998755431 11111001
Q ss_pred --ccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhh
Q 010006 325 --SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (520)
Q Consensus 325 --~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~ 362 (520)
-|.+ .+++.|.++.++..+. ...||||++||..|...
T Consensus 206 e~le~l-R~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~ 245 (246)
T d1vh1a_ 206 EMLEQL-RVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 245 (246)
T ss_dssp HTCTTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred HhHHHH-HHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhc
Confidence 1223 3445689999998876 46899999999988764
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.41 E-value=1.3e-11 Score=117.58 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=149.0
Q ss_pred eEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcCCC
Q 010006 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (520)
Q Consensus 90 ~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (520)
..|||+|.|.++|+. .|.|.+++|+ |||+|+++.+.++++++|+|++ +++++.+...+ +.. .
T Consensus 2 ~~~iIpAR~gSkRlp------~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsT--d~~~i~~~~~~-~~~--------~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIAT--DNENVADVAKS-FGA--------E 63 (255)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHH-TTC--------E
T ss_pred EEEEEecCCCCCCCC------CchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEc--CCcccchhhhh-hcc--------c
Confidence 479999999999975 3999999997 9999999999999999998888 44555555444 211 1
Q ss_pred eEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc--
Q 010006 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK-- 245 (520)
Q Consensus 170 ~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~-- 245 (520)
+..... . ...|+..+...+.. ......+.++.+.||. +.+ .++..+++.+.......+.........
T Consensus 64 -~~~~~~----~---~~~~~~~~~~~~~~-~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 134 (255)
T d1vica_ 64 -VCMTSV----N---HNSGTERLAEVVEK-LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEE 134 (255)
T ss_dssp -EEECCC----S---SCCHHHHHHHHHHH-TTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHH
T ss_pred -cceeee----c---cCCcchhhHHHHHH-hhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhh
Confidence 222211 1 11344444433333 3222456788899999 444 348888888888777766665553321
Q ss_pred -cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 246 -RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 246 -~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
..........++++++..+...+.......... ............+....|+|+|+++.+.....- .+...+-.
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~le~~ 209 (255)
T d1vica_ 135 LFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMN----LQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLENL 209 (255)
T ss_dssp HTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTT----CSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHHH
T ss_pred ccCccceeeeeccCCcccccccccccccchhhhh----ccchhhcccccchheeeeeecccHHHHhhhhcc-CCChhHHH
Confidence 122344556677888888876655322110000 000011112334667899999999988765431 11111000
Q ss_pred c--cchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 325 S--EVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 325 ~--dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
+ +.+ .++..|.++.++..+. .+.||||++||..|...+.
T Consensus 210 e~le~l-r~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 210 EKLEQL-RVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HTCTTH-HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred HhHHHH-HHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 1 112 2345588999888875 4789999999999976553
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=1.1e-13 Score=130.76 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=89.3
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
|+..|||||||+|+||++++. .||+|+||+|+ |||+|+++.+.++|+++|+|++++.....
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~----------------- 61 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA----------------- 61 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC-----------------
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce-----------------
Confidence 467899999999999999873 48999999997 99999999999999999988887543210
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEec
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~ 242 (520)
..... .+..|..+++..++..++ +++++++||. +++.+ +..+++.+.+ .++.+.+.+.
T Consensus 62 --~~~~~---------~~~~~~~~~v~~al~~~~----~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~ 121 (231)
T d2dpwa1 62 --PALTL---------PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVPK 121 (231)
T ss_dssp --CSEEE---------CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEEH
T ss_pred --eeeec---------ccchHHHHHHHHHHHhhc----CceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEec
Confidence 01111 112688999999987764 6899999999 55544 8888876543 4444555443
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.39 E-value=1.6e-11 Score=116.29 Aligned_cols=229 Identities=15% Similarity=0.224 Sum_probs=141.0
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhC-CCCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
+.-|||+|.|.++||. .|+|++++|+ |||+|+++++.++ ++++|+|++. .+.+...... ++
T Consensus 2 k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~~-~~-------- 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATD--DPRVEQAVQA-FG-------- 63 (245)
T ss_dssp CEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHH-TT--------
T ss_pred CEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEecc--cccchhhhhh-cC--------
Confidence 4679999999999986 3999999997 9999999999986 5788888874 3444444333 21
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCcee-ccc-cHHHHHHHHHhcCCcEEEEEEecCc-
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRM-DYERFIQAHRETDADITVAALPMDE- 244 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~-dl~~ll~~h~~~~a~~tl~~~~~~~- 244 (520)
.+++.... + ..++.+.+..++..++ .+.++++.+|.. .+. .+..+++.+................
T Consensus 64 ---~~~~~~~~---~---~~~~~~~~~~~~~~~~---~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 131 (245)
T d1h7ea_ 64 ---GKAIMTRN---D---HESGTDRLVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISA 131 (245)
T ss_dssp ---CEEEECCS---C---CSSHHHHHHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECH
T ss_pred ---ceEEEecC---c---cccccHHHHHHHHhcC---CCEEEEecchhhhcccccchhhhhccccccccccccccccccc
Confidence 11221111 1 1345566666666654 477888999994 343 4888888877655443223222111
Q ss_pred -c-cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 245 -K-RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 245 -~-~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
. .......+.....+.+..+...+....... ........+|+|.|+++.|.++.. ..+...+
T Consensus 132 ~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~g~~~~~~~~l~~~~~-~~~s~~e 195 (245)
T d1h7ea_ 132 AEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYSQ-LPESMPE 195 (245)
T ss_dssp HHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGGG-SCCCHHH
T ss_pred ccccCCcceeeccchhhhhhhhhhhhhhhhhcc---------------cccccceeeeeEEeeecccccccc-ccCChhh
Confidence 1 111222233444566666665544321110 112357788999999998875432 1111111
Q ss_pred ccc--cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhhhcc
Q 010006 323 FGS--EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~--dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~~~l 364 (520)
..+ |.+. +++.|.+++++..+..|.+|||++||..|...+.
T Consensus 196 ~~e~ie~lr-~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~ 238 (245)
T d1h7ea_ 196 QAESLEQLR-LMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHHTCTTHH-HHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred hhhhHHHHH-HHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 111 2233 5556999999999888999999999999876553
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.36 E-value=2.4e-12 Score=124.02 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=83.0
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-eeEECCCCEECCCCEEccc------------EEEC
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDT------------LLMG 437 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~------------~i~~ 437 (520)
..++|++.|...+.+.|++.+. .+++|+++|+|++ |.|. ++.||++|.|.++|.|... +..+
T Consensus 7 AiI~~~a~Ig~~V~IG~~~vIg----~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig 82 (259)
T d1j2za_ 7 AIISPKAEINKGVEIGEFCVIG----DGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 82 (259)
T ss_dssp CEECTTSEECTTCEECTTCEEC----TTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CEECCCCEECCCCEECCCCEEC----CCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence 4556666666666666665554 4567777777776 6655 5666666666666666321 2222
Q ss_pred Cccc-ccccc--ccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCe-----EEE
Q 010006 438 ADYY-ETDAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 508 (520)
Q Consensus 438 ~~~~-~~~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~-----v~I 508 (520)
.+-+ ..... +.+..+.+ .+.||+++.|. ++.+++++.||+++.+.+.+.+.+.++++++|+|+.+. +.|
T Consensus 83 ~~~~i~~~~~i~~~~~~~~~--~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~I 160 (259)
T d1j2za_ 83 EDNLIREFCMINPGTEGGIK--KTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRI 160 (259)
T ss_dssp SSCEECTTCEECCCCTTTTS--EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred cccccccccccccccccccc--cccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEe
Confidence 2111 00000 00011111 24577777775 67777777777777777666666666666666666551 778
Q ss_pred cCCCEeCCCccC
Q 010006 509 IKDALIPSGTII 520 (520)
Q Consensus 509 g~~~~i~~gtvi 520 (520)
|++++|++||+|
T Consensus 161 G~~a~IgagSvV 172 (259)
T d1j2za_ 161 AKGCMIAGKSAL 172 (259)
T ss_dssp CTTCEECTTCEE
T ss_pred ccceeeeeeeee
Confidence 888888888765
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.33 E-value=4.3e-12 Score=118.31 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=93.2
Q ss_pred ccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe-----eeEECCCCEECCCCEEcccEEECCcc-------
Q 010006 374 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADY------- 440 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~-----~s~Ig~~~~Ig~~~~I~~~~i~~~~~------- 440 (520)
......|.+++.+.|.+.+. .++.||++|+|++ |.|+ ...||++|.|+++|.|......+.+-
T Consensus 19 ~~~~p~I~~~a~I~p~A~i~----g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~ 94 (210)
T d1qrea_ 19 EPSAPVIDPTAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNI 94 (210)
T ss_dssp SCCCCEECTTCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGC
T ss_pred CCCCCccCCCCEECCCCEEe----cceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcc
Confidence 33344577777777777764 5778888888887 7773 46788888888888885443322210
Q ss_pred cc-ccccccccccCCCcceeeCCCCEEc-ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCc
Q 010006 441 YE-TDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 518 (520)
Q Consensus 441 ~~-~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gt 518 (520)
.. ......+.||+++ .||+++.|. +|.||+++.||.+++|.++ .+++.+.++.++++ .| ++|++++.|++|+
T Consensus 95 ~~~~~~~~~~~IG~~v---~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv-~g-~~i~~g~~I~~g~ 168 (210)
T d1qrea_ 95 VEVDGKEYAVYIGNNV---SLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAA-IG-VTIPDGRYIPAGM 168 (210)
T ss_dssp EEETTEEESEEECTTC---EECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEE-ES-CEECTTBEECTTC
T ss_pred ccccccccceeecccc---ccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEe-cC-cEeCCCcEECCCc
Confidence 00 1112467888888 899999997 7999999999999999863 34444444444433 33 5677888888887
Q ss_pred cC
Q 010006 519 II 520 (520)
Q Consensus 519 vi 520 (520)
++
T Consensus 169 ~v 170 (210)
T d1qrea_ 169 VV 170 (210)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.31 E-value=4.4e-12 Score=117.68 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=120.9
Q ss_pred ceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCcC
Q 010006 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (520)
Q Consensus 89 ~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (520)
++.+||||||.|+||+ ...||+|++++|+ |||+|+++++.+.. +++|+|++. +.+.+ .+ + . ..
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~-~~~~~----~~-~----~--~~ 64 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYM----KK-F----T--KN 64 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHH----HT-T----C--SS
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhccccccccccc-ccccc----cc-c----c--cc
Confidence 3679999999999998 4689999999987 99999999999865 677766653 33222 22 1 0 01
Q ss_pred CCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 010006 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (520)
Q Consensus 168 ~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~a~~tl~~~~~~~~ 245 (520)
+.++.- + ....++++.++..++ .+.+++..||. +++.+ +.++++.+.+. ++.+.+.+..+
T Consensus 65 ---~~~v~G-----g----~~r~~Sv~~gl~~~~---~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~~~d- 126 (205)
T d1w55a1 65 ---YEFIEG-----G----DTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVAD- 126 (205)
T ss_dssp ---SEEEEC-----C----SSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCS-
T ss_pred ---cccccc-----c----cchhhhhhhhhhhhh---hcceeeeccCcccCcHHHHHHHHhhhhcc--ccccccccccc-
Confidence 222211 1 224678888887764 47889999999 66655 88888876543 45555555432
Q ss_pred cCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCccc
Q 010006 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (520)
Q Consensus 246 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~~ 325 (520)
. +..+. +....... +..-.-.+|+.+.|.+.++. ..++ .
T Consensus 127 ----t--i~~~~--------~~~~R~~l----------------------~~~qTPQ~f~~~~l~~a~~~----~~~~-t 165 (205)
T d1w55a1 127 ----T--TLFDN--------EALQREKI----------------------KLIQTPQISKTKLLKKALDQ----NLEF-T 165 (205)
T ss_dssp ----C--EEETT--------EEECGGGC----------------------CEECSCEEEEHHHHHHHTSS----CCCC-S
T ss_pred ----c--ccccc--------ccccchhe----------------------eeeecchhhhhHHHHHHHHc----CCCC-C
Confidence 1 11111 11111110 00011135777777655432 2223 4
Q ss_pred cchHhhhhCCceEEEEEecceEEeCCCHHHHHHhhh
Q 010006 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (520)
Q Consensus 326 dil~~li~~~~~v~a~~~~g~w~dI~t~~dy~~An~ 361 (520)
|-...+...+.++..+.-+..-+-|.+++|+..++.
T Consensus 166 Dd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~el 201 (205)
T d1w55a1 166 DDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDL 201 (205)
T ss_dssp SHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSCC
T ss_pred cHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhcC
Confidence 434444445788877766655667889999877653
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.28 E-value=1.1e-11 Score=119.53 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=31.6
Q ss_pred cccccCCCcceeeCCCCEEcc--------eEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 448 RFLAAKGSVPIGIGKNSHIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~--------~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
.+.||+++ .|++++.|.. +.||+++.|..++.|...+.+++.+.+..++.++.. ++||+++.|++++.
T Consensus 83 ~v~IG~~v---~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~-~~Ig~~v~ig~~~~ 158 (262)
T d2jf2a1 83 RVEIGDRN---RIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGH-VSVDDFAIIGGMTA 158 (262)
T ss_dssp EEEECSSC---EECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred eEEECCee---eecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccc-eeeCceEEeccCce
Confidence 34555555 5666665542 233333333333333333333333333333333333 66777777766654
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.20 E-value=4.7e-11 Score=109.09 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=75.2
Q ss_pred ccccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCCCEE----------------CCCCEEcccE
Q 010006 372 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCI----------------SEGAIIEDTL 434 (520)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~~~I----------------g~~~~I~~~~ 434 (520)
.++++++.|.+++.+.|++.+. .++.||++|+|++ +.|.++.||++|.| |+++.+.+.+
T Consensus 9 ~~I~~~v~Ig~~~~I~~~vvI~----~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~ 84 (196)
T d1g97a1 9 TYIDIDVEIASEVQIEANVTLK----GQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNS 84 (196)
T ss_dssp CEECTTCEECTTCEECTTCEEE----SSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSC
T ss_pred EEECCCcEECCCCEECCCCEEC----CCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceeccccc
Confidence 3567777777777777777665 3455666666665 55555555544443 3333333222
Q ss_pred EECCcc-ccc-cccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCC-------cCCcccccCCeEEccCe
Q 010006 435 LMGADY-YET-DADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGI 505 (520)
Q Consensus 435 i~~~~~-~~~-~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~I~~~~ 505 (520)
.++..- ... .......+++.. .+++++.+..+.++.++.++.++....... +++.++++.++.|.++
T Consensus 85 ~i~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~g- 160 (196)
T d1g97a1 85 SLGAQVHIGNFVEVKGSSIGENT---KAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP- 160 (196)
T ss_dssp EECTTCEEEEEEEEESCEECTTC---EEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-
T ss_pred ccccceeecccccceeeecCcce---EecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCC-
Confidence 222110 000 000111222222 344444555566666667776666544332 3455556666666666
Q ss_pred EEEcCCCEeCCCccC
Q 010006 506 VTIIKDALIPSGTII 520 (520)
Q Consensus 506 v~Ig~~~~i~~gtvi 520 (520)
++||++++|++||+|
T Consensus 161 v~IG~~s~IgagsvV 175 (196)
T d1g97a1 161 VELGDNSLVGAGSTI 175 (196)
T ss_dssp CEECTTCEECTTCEE
T ss_pred cEECCCCEECCCCEE
Confidence 889999999988875
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.7e-11 Score=110.03 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=76.6
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCCCCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
|.++.|||||||+|+||+ ..||+|++++|+ |||+|+++.+... +.+|+|+++.+.+... . +
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~----~-~-------- 61 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIYQ----A-S-------- 61 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHHH----T-T--------
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhhh----h-c--------
Confidence 567999999999999998 258999999987 9999999999876 6788888876543221 1 1
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecccc-HHHHHHH
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (520)
+ +.+..... +++ .|...++..+.... ..+.+++++||+ +.+.+ +..+++.
T Consensus 62 ~---~~v~~d~~----~~~-~~~~~g~~~~~~~~---~~~~vlv~~~D~P~i~~~~i~~L~~~ 113 (188)
T d1e5ka_ 62 G---LKVIEDSL----ADY-PGPLAGMLSVMQQE---AGEWFLFCPCDTPYIPPDLAARLNHQ 113 (188)
T ss_dssp S---CCEECCCT----TCC-CSHHHHHHHHHHHC---CSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred C---CCcccccc----ccc-cchhHHHHHHHHhc---ccceEEEeccCCCCCCHHHHHHHHHh
Confidence 1 11222111 111 45666676665443 357899999999 55666 5555553
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.18 E-value=7.3e-11 Score=113.40 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=74.7
Q ss_pred cccCCCcCCCceee-cccc-cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccc---ccccccccccc
Q 010006 380 IYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY---ETDADRRFLAA 452 (520)
Q Consensus 380 i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~---~~~~~~~~~~~ 452 (520)
|.+++.+.|.+++. ++.| ++++|+++++|++ |.|. +++|+.+|.||++|.|.+...++.+-. .......+.+|
T Consensus 3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig 82 (259)
T d1j2za_ 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 82 (259)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence 33444444444443 1222 4466666666665 6665 566666666666666666666654311 01112334444
Q ss_pred CCCcceeeCCCCEEc--------ceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 453 KGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 453 ~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++ .|++++.+. +++|++++.|+.++.+...+.+++...+..++.+..+ |+||+++.||.+++|
T Consensus 83 ~~~---~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~-v~Ig~~v~IG~~s~I 154 (259)
T d1j2za_ 83 EDN---LIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH-IEIGDYVNIGGLTAI 154 (259)
T ss_dssp SSC---EECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred ccc---ccccccccccccccccccccccCceEEeccccccceecccceeeeecccccccc-ccccccceecceeee
Confidence 444 455555543 3566666666666666555555555555555555555 777777777777653
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.17 E-value=1.9e-10 Score=106.89 Aligned_cols=217 Identities=17% Similarity=0.162 Sum_probs=133.6
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCCc
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (520)
++.-|||+|.|.++|+. .|+|++++|+ |||+|+|+.+.+++ +++|+|.+ +.+.+.+.+.+ +..
T Consensus 3 ~~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~-~~~------ 66 (225)
T d1eyra_ 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVST--DGGLIAEEAKN-FGV------ 66 (225)
T ss_dssp CEEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TTC------
T ss_pred CCEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEee--ccchhhhhhhh-hcc------
Confidence 45668999999999984 4999999987 99999999999987 58888777 45566655544 221
Q ss_pred CCCeEEEeecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-eccc-cHHHHHHHHHhcCCcEEEEEEecCc
Q 010006 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (520)
Q Consensus 167 ~~~~v~vl~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a~~tl~~~~~~~ 244 (520)
. + +........ ...++.+.+..+...+.. ..+.++.+.||. +.+. ++..+++.+.+.+.+..+.+.+...
T Consensus 67 --~-~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~ 138 (225)
T d1eyra_ 67 --E-V-VLRPAELAS---DTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138 (225)
T ss_dssp --E-E-EECCHHHHS---TTCCHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS
T ss_pred --e-e-eeecccccc---ccccchhhcccccccccc-ccceEEEeeccccccccccccccceeeccccccccceeecccc
Confidence 1 1 111111001 113455666666655543 357899999999 5554 4999999888877776566555432
Q ss_pred ccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCCcc
Q 010006 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (520)
Q Consensus 245 ~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~~~ 324 (520)
. ..+..+.. +++....+......... .......+....++|+++++.|... . .. +
T Consensus 139 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~y~~~g~iy~~~~~~l~~~-~-~~-----~- 193 (225)
T d1eyra_ 139 H--PLKTLLQI-NNGEYAPMRHLSDLEQP--------------RQQLPQAFRPNGAIYINDTASLIAN-N-CF-----F- 193 (225)
T ss_dssp C--TTSCEEEC-SSSCEEESSCGGGGTSC--------------GGGSCCEEEEEEEEEEEEHHHHHHH-T-SS-----C-
T ss_pred c--cccccccc-ccccccccccccccccc--------------cccCcceeeecceeEEeeHHHHHHc-C-Cc-----c-
Confidence 2 22333333 45555544322211100 0011123567889999999877532 0 00 1
Q ss_pred ccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhc
Q 010006 325 SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 325 ~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~ 363 (520)
+.++..+..+. ..+||+|++||..|...+
T Consensus 194 ----------~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 194 ----------IAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp ----------CSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred ----------CCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 33445555542 357999999999887543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.13 E-value=6e-11 Score=106.75 Aligned_cols=121 Identities=19% Similarity=0.285 Sum_probs=72.0
Q ss_pred ccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCcccccccccc
Q 010006 374 YDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRR 448 (520)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~ 448 (520)
.+..+.|..++.+.|.+.+. .++.||++|.|+. |.|. ...||.++.+++++.+.... ...
T Consensus 9 ~~~~~~Ig~~~~I~~~a~I~----~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~-----------~~~ 73 (172)
T d1xhda_ 9 KEKKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSP-----------QYP 73 (172)
T ss_dssp TTBCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCT-----------TCC
T ss_pred CCcCCEECCCcEECCCCEEe----CCEEECCCcEecCCcccccccccccccceeeeeeeceeccCC-----------cCC
Confidence 34445566666666666654 4566666666665 5554 24666666666666654331 122
Q ss_pred ccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 449 FLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 449 ~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
+.+|+++ .++.++.+.++.|++++.||.+++|.++ +.+|++|+|+.+ ++|.++..||++++
T Consensus 74 ~~ig~~~---~~~~~~~~~~~~i~~~~~ig~~~~i~~g------v~IG~~~~Igag-svV~~~~~i~~~~v 134 (172)
T d1xhda_ 74 LILEDDV---TVGHQVILHSCHIKKDALIGMGSIILDG------AEIGEGAFIGAG-SLVSQGKKIPPNTL 134 (172)
T ss_dssp EEECTTC---EECTTCEEESCEECTTCEECTTCEECTT------CEECTTCEECTT-CEECTTCEECTTEE
T ss_pred eeeeeee---eeeeeecccccccccceEEecccEeeCC------cEEcCcccccce-EEEeeCeEECCCeE
Confidence 3444444 5666667777777777777777777654 445556666666 55556666666654
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.12 E-value=1.9e-10 Score=103.39 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=83.3
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-----eEE
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AII 471 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii 471 (520)
...||++|+|++ +.|. ++.||++|.|+++|+|.... ..+.+|+++ .|++++.+.. +++
T Consensus 12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~------------~~i~IG~~~---~i~~~~~~~~~~~~~~~i 76 (172)
T d1xhda_ 12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDV------------SPTIIGDRV---NVQDQCTLHQSPQYPLIL 76 (172)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECCTTCCEEE
T ss_pred CCEECCCcEECCCCEEeCCEEECCCcEecCCccccccc------------cccccccee---eeeeeceeccCCcCCeee
Confidence 457888888887 7776 79999999999999986442 123444455 6777777653 788
Q ss_pred CCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 472 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 472 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
++++.++.++.+. ...+.+.++++.++.|.++ ++||++++|++||+|
T Consensus 77 g~~~~~~~~~~~~-~~~i~~~~~ig~~~~i~~g-v~IG~~~~IgagsvV 123 (172)
T d1xhda_ 77 EDDVTVGHQVILH-SCHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV 123 (172)
T ss_dssp CTTCEECTTCEEE-SCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred eeeeeeeeeeccc-ccccccceEEecccEeeCC-cEEcCcccccceEEE
Confidence 8999999988885 4678888999999999999 999999999999975
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.4e-10 Score=90.11 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=51.0
Q ss_pred cceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCC
Q 010006 398 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 475 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 475 (520)
.++.||++|.|++ +.|+ ++.||++|+||++|.|+++.++++ +.|+++++|++|+|+++|
T Consensus 13 g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~ 73 (78)
T d1fxja1 13 GTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAAC 73 (78)
T ss_dssp EEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTC
T ss_pred ccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCC
Confidence 4567777777777 7777 688888888888888888877765 578888888888888888
Q ss_pred EECCC
Q 010006 476 RIGDN 480 (520)
Q Consensus 476 ~Ig~~ 480 (520)
.||++
T Consensus 74 ~IGPf 78 (78)
T d1fxja1 74 TIGPF 78 (78)
T ss_dssp EESCC
T ss_pred EECcC
Confidence 88864
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.09 E-value=2.7e-10 Score=104.45 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=9.7
Q ss_pred eEEeCCCHHHHHHhhhhc
Q 010006 346 YWEDIGTIEAFYNANLGI 363 (520)
Q Consensus 346 ~w~dI~t~~dy~~An~~~ 363 (520)
+..-|+++..-.+....+
T Consensus 49 ~~iaIG~~~~R~~~~~~~ 66 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKI 66 (193)
T ss_dssp EEECCSCHHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHh
Confidence 345678776544444433
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=1.2e-10 Score=104.82 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=64.7
Q ss_pred cccCCCccccCCCcCCCceeecccccceEECCCcEEee-eEEe----eeEECCCCEECCCCEEcccEEECCccccccccc
Q 010006 373 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADR 447 (520)
Q Consensus 373 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~----~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~ 447 (520)
|.+.+..|.+++.+.|.+.+. .++.||++|.|++ |.|. ...|+.++.++..+.+..+...
T Consensus 6 ~~g~~~~I~~~~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~----------- 70 (173)
T d1v3wa_ 6 INGKKPRIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGY----------- 70 (173)
T ss_dssp BTTBCCEECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTB-----------
T ss_pred CCCCCCEECcCcEECCCCEEe----CceEECCCCEECCCccccccccccccccccccccccccccccCC-----------
Confidence 334455566666666666554 4566666666666 5553 2355555555555555322110
Q ss_pred cccccCCCcceeeCCCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 448 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 448 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+..+.+. .+........+.|++++.||.++.|. ..+.+|++|+|+.| ++|.++..||+++++
T Consensus 71 ~~~~~~~~---~~~~~~~~~~~~Ig~~~~ig~~~~i~------~gv~Ig~~~vIgag-svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 71 PTEIGEYV---TIGHNAMVHGAKVGNYVIIGISSVIL------DGAKIGDHVIIGAG-AVVPPNKEIPDYSLV 133 (173)
T ss_dssp CEEECSSC---EECTTCEEESCEECSSEEECTTCEEC------TTCEECSSEEECTT-CEECTTCEECTTEEE
T ss_pred CcccCcce---eeeeeeeeeeeecCCcccccceeeec------CCEEEcceeEEcCC-cEEeCCeEeCCCCEE
Confidence 11111111 22333333345555555555555554 34556667777777 777777777777653
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.05 E-value=8.6e-09 Score=103.32 Aligned_cols=213 Identities=13% Similarity=0.148 Sum_probs=139.7
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHh----CCC-CeEEEEecc-ChhHHHHHHHHhhhc
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQF-NSASLNRHLSRAYAS 160 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~----~gi-~~I~Iv~~~-~~~~i~~~l~~~~~~ 160 (520)
..++.+|+||||.||||+ ...||.++||+.++++++..++++.. .|. -.++|.+++ ..+.+.+++++...+
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f 148 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 148 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC
Confidence 468999999999999997 47899999997556999999999864 232 346777764 567888999884433
Q ss_pred cCCCC-cCCCeEEE--------eecccCCCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceeccccHHHHH
Q 010006 161 NMGGY-KNEGFVEV--------LAAQQSPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERFI 225 (520)
Q Consensus 161 ~~~~~-~~~~~v~v--------l~~~~~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll 225 (520)
++... |....+.. +.....+....| +.|.++..... ++.+...+.+++.+...|.+....--.++
T Consensus 149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~l 228 (378)
T d2icya2 149 NVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTIL 228 (378)
T ss_dssp SSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHH
T ss_pred CCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHH
Confidence 32110 01110110 000000111124 45777655543 34445557799999999997765445678
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEe
Q 010006 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (520)
Q Consensus 226 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs 305 (520)
..|.++++++++-+.+....+...-.++..|..-+|+++.|.|.......-. ...-.+.+++.++|+
T Consensus 229 G~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~~~-------------~~~~~~~N~nn~~~~ 295 (378)
T d2icya2 229 KHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKS-------------IEKFKIFNTNNLWVN 295 (378)
T ss_dssp HHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHS-------------SSSCCEEEEEEEEEE
T ss_pred HHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhhcC-------------CcCcceeeeeeeeee
Confidence 8888999999888887655444455566666556788888888754321100 011125689999999
Q ss_pred HHHHHHHHhh
Q 010006 306 KDVMLNLLRD 315 (520)
Q Consensus 306 ~~vl~~ll~~ 315 (520)
.+.++++++.
T Consensus 296 l~~l~~~~~~ 305 (378)
T d2icya2 296 LKAIKKLVEA 305 (378)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=1.4e-09 Score=101.38 Aligned_cols=216 Identities=12% Similarity=0.147 Sum_probs=126.9
Q ss_pred ccceEEEEEeCCCCCCCCccccCCCccceecCCccchhHHHHHHhHhCC-CCeEEEEeccChhHHHHHHHHhhhccCCCC
Q 010006 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (520)
Q Consensus 87 ~~~~~aIILAaG~GtRl~PlT~~~pK~Llpv~G~~plI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (520)
++++.|||+|.|.++||. -|+|++++|+ |||+|+++++.+++ +++|+|.+ +.+.+.+...+ |.
T Consensus 1 ~~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivst--d~~~i~~~~~~-~~------ 64 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQ-FG------ 64 (228)
T ss_dssp CCCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-TT------
T ss_pred CCCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEec--chhhhhhhhhh-cC------
Confidence 357999999999999994 4999999987 99999999999876 68888877 45556555554 21
Q ss_pred cCCCeEEEe-ecccCCCCCCCccCcHHHHHHHHHHhhhcCcceEEEEeCce-ecc-ccHHHHHHHHHhcCCcEEEEEEec
Q 010006 166 KNEGFVEVL-AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPM 242 (520)
Q Consensus 166 ~~~~~v~vl-~~~~~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~a~~tl~~~~~ 242 (520)
+.++ .......+. ....+.+..++.... ..+.++++.+|. +.. .++.++++.+.+.+.+.++.+...
T Consensus 65 -----~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~ 134 (228)
T d1qwja_ 65 -----AQVHRRSSETSKDS---STSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR 134 (228)
T ss_dssp -----CEEEECCGGGSSTT---CCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred -----cccccccccccccc---chhhhhhhhcccccc--ccceeeeecccccccCchhhhhhhhhhhccCcccccccccc
Confidence 1111 111111111 334566665554332 357788888998 444 459999999988888876665543
Q ss_pred CcccCcceEEEEeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCceeeeeEEEEeHHHHHHHHhhhCCCCCC
Q 010006 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (520)
Q Consensus 243 ~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~~ 322 (520)
.. ..+..+.....+........+... ...+ .....+..+.++|+++.+++.. ..
T Consensus 135 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~q-d~~~~y~~ng~~~~~k~~~~~~---~~------ 188 (228)
T d1qwja_ 135 HQ---FRWSEIQKGVREVTEPLNLNPAKR-------------PRRQ-DWDGELYENGSFYFAKRHLIEM---GY------ 188 (228)
T ss_dssp CC---CEECCCCSSTTCCCCBSSSBTTBC-------------CCTT-TSCCEEEEEEEEEEEEHHHHHT---TC------
T ss_pred cc---ccchhhhhhccccccchhhhhhhc-------------cccc-cccceeeeeeEEEEEeHHHHhh---CC------
Confidence 21 111111111111110000000000 0000 0112345677788888876541 11
Q ss_pred ccccchHhhhhCCceEEEEEecc-eEEeCCCHHHHHHhhhhcc
Q 010006 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (520)
Q Consensus 323 ~~~dil~~li~~~~~v~a~~~~g-~w~dI~t~~dy~~An~~~l 364 (520)
+ .+.++..+.... ..+||+|++|+..|...+.
T Consensus 189 ~----------~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~ 221 (228)
T d1qwja_ 189 L----------QGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVL 221 (228)
T ss_dssp S----------SCSSEEEEECCGGGCCCHHHHCSHHHHHHHHH
T ss_pred c----------CCCCEEEEEcCccceECCCCHHHHHHHHHHHH
Confidence 1 144666666653 3579999999998876654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.03 E-value=5.4e-10 Score=103.76 Aligned_cols=103 Identities=12% Similarity=0.149 Sum_probs=68.9
Q ss_pred EECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE------------
Q 010006 401 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI------------ 466 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i------------ 466 (520)
.|+++|+|.+ +.|. ++.||++|.||++|.|+... ...+.||+++ .|++++.|
T Consensus 24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~-----------~~~i~IG~~~---~I~~~~~I~~~~~~~~~~~~ 89 (210)
T d1qrea_ 24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDE-----------GMPIFVGDRS---NVQDGVVLHALETINEEGEP 89 (210)
T ss_dssp EECTTCEECTTCEEEESEEECTTCEECTTCEEEESS-----------SCCEEECTTC---EECTTCEEEECCSBCTTSCB
T ss_pred ccCCCCEECCCCEEecceEECCCCEEccCeeeeccc-----------CCceEEcccc---eeeeeeEeccceeecccccc
Confidence 4666666665 4444 67888888888888884210 1233344444 45555554
Q ss_pred ------------cceEECCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCcc
Q 010006 467 ------------KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 467 ------------~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
..++||+++.||.++.|.+...+++.+.+|.+++|..+ +||++++|+++++
T Consensus 90 ~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~--~IG~~~vIg~~sv 152 (210)
T d1qrea_ 90 IEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS--KVGNNCVLEPRSA 152 (210)
T ss_dssp CGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE--EECTTCEECTTCE
T ss_pred ccCccccccccccceeeccccccccccccccCCcccCCcEeeCCcccccc--ccccCcEEecCcE
Confidence 34788888888888888776677777777777777644 6888888887765
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=8.6e-10 Score=101.15 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=42.4
Q ss_pred eeCCCCEEcceEECCCCEECCCcEEecCC-------CcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 459 GIGKNSHIKRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 459 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~-------~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.|++++.+.++.+++++.++.++...+.. .+++.++++.++.|.++ ++||++++|++||+|
T Consensus 109 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 109 KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred EEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECCCCEECCCCEE
Confidence 44444455566777788888877666543 34555566666666666 899999999999875
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.96 E-value=5.5e-10 Score=101.78 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=13.7
Q ss_pred ccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 495 ETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 495 ~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+++++.|+.+ +.|.+++.||.|++|
T Consensus 145 Ig~~~~iG~~-~~I~~gv~IG~~s~I 169 (196)
T d1g97a1 145 IGNNVFVGSN-STIIAPVELGDNSLV 169 (196)
T ss_dssp ECTTCEECTT-CEEESSCEECTTCEE
T ss_pred EecCCEEeee-eEEcCCcEECCCCEE
Confidence 3455555555 555555666666543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=5.4e-10 Score=102.81 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=36.4
Q ss_pred ccccCCCcCCCceee-cccccceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcccE
Q 010006 379 PIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTL 434 (520)
Q Consensus 379 ~i~~~~~~~~~~~i~-~~~i~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~ 434 (520)
.+...+.+.||..+. + .++.||++|+|+. |.|. ...||++|.|+++|.|....
T Consensus 56 ~iG~~~~I~p~~~i~~G---~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~ 113 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTG 113 (200)
T ss_dssp BCCSSCEECSCEEESCS---TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEE
T ss_pred cCCCCCEEcCCEEEecC---CccEECCccEECceEEEecCCCcEeCCCccccceeEEeccc
Confidence 345556666766553 2 4567888888887 7774 46788888888888886544
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.88 E-value=1.9e-09 Score=101.38 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=47.5
Q ss_pred eEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEEC
Q 010006 400 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIG 478 (520)
Q Consensus 400 ~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig 478 (520)
++||+||.|.. ++.||..+.||++|+|..++.++.. +|-.....+.|++++ .||.+|.|- +++|++++.||
T Consensus 132 A~ig~~~midt----~a~vgs~aqIG~~vhis~g~~igGv-lep~~~~p~iIed~~---~IGa~s~v~egv~Vg~~avi~ 203 (274)
T d3tdta_ 132 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDNC---FIGARSEVVEGVIVEEGSVIS 203 (274)
T ss_dssp CEECTTCEECT----TEEECTTCEECTTCEECTTCEECCS-BTTBCSSCCEECTTC---EECTTCEECTTCEECTTCEEC
T ss_pred cEEcCCcEEcc----cceecceeEECCCeEECCCcEEEec-cccCCCCCcEEecCc---EeccCceEecCEEecCceEec
Confidence 44444444442 5666666666666666666555532 333333566666666 566666653 66777777777
Q ss_pred CCcEEecCCCc
Q 010006 479 DNVKIVNSDSV 489 (520)
Q Consensus 479 ~~~~i~~~~~v 489 (520)
+|+.|.....+
T Consensus 204 ~gv~i~~~t~i 214 (274)
T d3tdta_ 204 MGVYLGQSTRI 214 (274)
T ss_dssp TTCEECTTCCE
T ss_pred cceEEeccccc
Confidence 77777654444
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.5e-09 Score=81.30 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=44.4
Q ss_pred eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcceEECCCCEECCCcEEec
Q 010006 415 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 485 (520)
+..||++|.|+++|.|++.+.++ +|+ .||++|.|++|.|++|++|++++.|.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG---------------~~v---~Ig~~~~i~~~~Ig~~~~I~~~s~i~~ 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLG---------------HRV---KIGTGCVIKNSVIGDDCEISPYTVVED 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEEC---------------TTC---EECTTCEEESCEECTTCEECTTCEEES
T ss_pred cEEECCCCEECCccEEeCCcEEC---------------CCC---EECCCeEEecCEECCCCEEcCCcEEEC
Confidence 67888999999998888665544 344 899999999999999999999999964
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.86 E-value=2.2e-10 Score=98.80 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=31.2
Q ss_pred cCCCcCCCceeecccccceEECCCcEEee-eEEeeeEECCC
Q 010006 382 TQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR 421 (520)
Q Consensus 382 ~~~~~~~~~~i~~~~i~~~~Ig~g~~I~~-~~i~~s~Ig~~ 421 (520)
+++.+.+++.+.++.+.+++||++|.|++ +.|+++++..+
T Consensus 13 ~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 13 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGA 53 (135)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCC
T ss_pred EeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECC
Confidence 34668888888777788899999999998 88886666554
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=1.1e-08 Score=91.58 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=62.7
Q ss_pred ceEECCCcEEee-eEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-----ceEE
Q 010006 399 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAII 471 (520)
Q Consensus 399 ~~~Ig~g~~I~~-~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii 471 (520)
+..|+++|+|.+ |.|. ++.||++|.||++|.|.... ..+.+++++ .++.++.+. .+.+
T Consensus 10 ~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~------------~~v~i~~~~---~i~~~~~~~~~~~~~~~~ 74 (173)
T d1v3wa_ 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDI------------EQIYVGKYS---NVQDNVSIHTSHGYPTEI 74 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEE------------EEEEECTTC---EECTTCEEECBTTBCEEE
T ss_pred CCEECcCcEECCCCEEeCceEECCCCEECCCccccccc------------ccccccccc---ccccccccccccCCCccc
Confidence 456777777776 5555 78999999999999996431 111222222 344444432 2334
Q ss_pred CCCCEECCCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 472 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 472 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
+.++.+...... ....+++.++++.++.|.++ ++||++++|++||+|
T Consensus 75 ~~~~~~~~~~~~-~~~~Ig~~~~ig~~~~i~~g-v~Ig~~~vIgagsvV 121 (173)
T d1v3wa_ 75 GEYVTIGHNAMV-HGAKVGNYVIIGISSVILDG-AKIGDHVIIGAGAVV 121 (173)
T ss_dssp CSSCEECTTCEE-ESCEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred Ccceeeeeeeee-eeeecCCcccccceeeecCC-EEEcceeEEcCCcEE
Confidence 444444333322 23445555555667788888 788888888888764
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.77 E-value=1.1e-08 Score=93.46 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=5.5
Q ss_pred EEEcCCCEeCCCc
Q 010006 506 VTIIKDALIPSGT 518 (520)
Q Consensus 506 v~Ig~~~~i~~gt 518 (520)
++||++++|++||
T Consensus 161 v~Ig~~~~Igags 173 (193)
T d3bswa1 161 LSLADDSILGGGA 173 (193)
T ss_dssp CEECTTCEECTTC
T ss_pred eEECCCCEECCCC
Confidence 4444444444444
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.9e-09 Score=97.58 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=27.0
Q ss_pred cceEECCCcEEee-eEEe---eeEECCCCEECCCCEEcccEEE
Q 010006 398 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLM 436 (520)
Q Consensus 398 ~~~~Ig~g~~I~~-~~i~---~s~Ig~~~~Ig~~~~I~~~~i~ 436 (520)
.++.||++|+|+. |.|. ...||++|.|+++|.|......
T Consensus 71 ~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~ 113 (182)
T d1ocxa_ 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHP 113 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECC
T ss_pred cceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccc
Confidence 4566777777766 6664 2478888888888888766543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.8e-08 Score=92.38 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=46.2
Q ss_pred EECCCcEEee-eEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEcc-eEECCCCEEC
Q 010006 401 VIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIIDKNARIG 478 (520)
Q Consensus 401 ~Ig~g~~I~~-~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~Ig 478 (520)
.||++|+|++ +.+ ..|.+++||++|.|...+++.+ ...+.||+++ .||++++|.. +...+.....
T Consensus 56 ~iG~~~~I~p~~~i---~~G~nv~IG~~~~I~~~~~I~~-------~~~i~IG~~v---~Ig~~v~I~~~~~~~~~~~~~ 122 (200)
T d1krra_ 56 TVGENAWVEPPVYF---SYGSNIHIGRNFYANFNLTIVD-------DYTVTIGDNV---LIAPNVTLSVTGHPVHHELRK 122 (200)
T ss_dssp BCCSSCEECSCEEE---SCSTTEEECSSCEECSCEEEEC-------SSCEEECSSC---EECSSCEEESEECCSSTTTCT
T ss_pred cCCCCCEEcCCEEE---ecCCccEECCccEECceEEEec-------CCCcEeCCCc---cccceeEEecccccceecccc
Confidence 3666777765 433 2244444444444433332221 0234445555 5666666542 1112222222
Q ss_pred CCcEEecCCCcCCcccccCCeEEccCeEEEcCCCEeCCCccC
Q 010006 479 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 520 (520)
Q Consensus 479 ~~~~i~~~~~v~~~~~~~~~~~I~~~~v~Ig~~~~i~~gtvi 520 (520)
.+..+.....+++.+++|.++.|.+| |+||++++|++||+|
T Consensus 123 ~~~~~~~~v~Igd~v~IG~~~~I~~G-v~IG~~~vIgagSvV 163 (200)
T d1krra_ 123 NGEMYSFPITIGNNVWIGSHVVINPG-VTIGDNSVIGAGSIV 163 (200)
T ss_dssp TCCBEECCEEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred cceeecceEEEccCcccceeeecccc-cccCCCcEEeCCCEE
Confidence 22222222223333334445555555 556666666655553
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.73 E-value=1.8e-08 Score=94.49 Aligned_cols=104 Identities=20% Similarity=0.322 Sum_probs=65.3
Q ss_pred CCcCCCceeecccccceEECCCcEEeeeEEe-eeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeC-
Q 010006 384 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG- 461 (520)
Q Consensus 384 ~~~~~~~~i~~~~i~~~~Ig~g~~I~~~~i~-~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig- 461 (520)
.++.|++.+. ..++|++|+++.++.|. +++||++|.|..+++|+.|..+|. +++|+.|+ +||
T Consensus 103 ~RvvPga~VR----~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~---------~vhis~g~---~igG 166 (274)
T d3tdta_ 103 FRVVPPATVR----QGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGK---------NVHLSGGV---GIGG 166 (274)
T ss_dssp CEECTTCEEB----TTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECT---------TCEECTTC---EECC
T ss_pred EEeCCCceec----cCcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECC---------CeEECCCc---EEEe
Confidence 4677777765 46788888877777777 788888888888888887776663 33443333 221
Q ss_pred --CCCEEcceEECCCCEECCCcEEecCCCcCCcccccCCeEEcc
Q 010006 462 --KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKS 503 (520)
Q Consensus 462 --~~~~i~~~ii~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~ 503 (520)
+...-..++|++||.||.++.+..+..+++...++.|++|..
T Consensus 167 vlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~ 210 (274)
T d3tdta_ 167 VLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQ 210 (274)
T ss_dssp SBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred ccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEec
Confidence 111112467888888888888876544444444444444443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.2e-08 Score=91.49 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=9.3
Q ss_pred eeEECCCCEECCCCEEcccEE
Q 010006 415 HSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
++.||++|+|+++|.|.++.+
T Consensus 32 ~v~IG~~~~I~~~~~I~~~~~ 52 (201)
T d2oi6a1 32 NVTLGHRVKIGTGCVIKNSVI 52 (201)
T ss_dssp EEEECTTCEECTTCEEESCEE
T ss_pred ceEECCCcEECCCEEEeeecc
Confidence 344444444444444443333
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.63 E-value=5.5e-08 Score=95.72 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=15.4
Q ss_pred ceEECCCCEECCCcEEecCC-CcCCcccccCCeEEccC
Q 010006 468 RAIIDKNARIGDNVKIVNSD-SVQEAARETDGYFIKSG 504 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~~~-~v~~~~~~~~~~~I~~~ 504 (520)
++.|..++.||.++.|.++. .+.+..++++++.|+.+
T Consensus 241 ~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~ 278 (320)
T d2f9ca1 241 NCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGE 278 (320)
T ss_dssp SEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESS
T ss_pred eccccCceEECCCeEEeCCeeEECCceEECCCcEEccc
Confidence 34444444444444443321 33333444444444433
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=4.9e-08 Score=88.02 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=10.0
Q ss_pred CeEEccCeEEEcCCCEeCCCcc
Q 010006 498 GYFIKSGIVTIIKDALIPSGTI 519 (520)
Q Consensus 498 ~~~I~~~~v~Ig~~~~i~~gtv 519 (520)
++.|.+| |+||++++|++||+
T Consensus 140 ~~~I~~G-v~IG~~~vIgagsv 160 (182)
T d1ocxa_ 140 RAVINPG-VTIGDNVVVASGAV 160 (182)
T ss_dssp TCEECTT-CEECTTCEECTTCE
T ss_pred eeeccCc-EEECCCCEECCCCE
Confidence 4444444 44444444444444
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.47 E-value=1.5e-08 Score=93.19 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=9.4
Q ss_pred ceEECCCCEECCCcEEec
Q 010006 468 RAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~ 485 (520)
.++||++|.||.+|.|..
T Consensus 113 ~v~IGd~v~IG~~~~I~~ 130 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMP 130 (203)
T ss_dssp CEEECSSCEECTTCEECT
T ss_pred CeEECCEEEECCceeEEe
Confidence 355555555555555543
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.36 E-value=1.2e-07 Score=87.13 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=6.8
Q ss_pred cceEECCCcEEe
Q 010006 398 TDSVIGEGCVIK 409 (520)
Q Consensus 398 ~~~~Ig~g~~I~ 409 (520)
.++.||++|+|.
T Consensus 28 ~nV~IG~~~~I~ 39 (203)
T d1mr7a_ 28 ENVEVGEYSYYD 39 (203)
T ss_dssp TTEEECTTCEEE
T ss_pred CCEEECCCcEEc
Confidence 345566666554
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.34 E-value=4.6e-07 Score=85.15 Aligned_cols=80 Identities=28% Similarity=0.369 Sum_probs=41.7
Q ss_pred ceEECCCcEEeeeEEeeeEECCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEEc-ceEECCCCEE
Q 010006 399 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 477 (520)
Q Consensus 399 ~~~Ig~g~~I~~~~i~~s~Ig~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 477 (520)
++.||+|++|... .+.+||+++.||++|.|..++..+....+. ..+..+||+|+ .||.|++|- +..||+|+.|
T Consensus 143 ~~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~~~~~~~~~-~~~~~~Ig~~v---~IGaga~Ilg~v~IG~~a~I 216 (241)
T d1ssqa_ 143 AAKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKES-GDRHPKVREGV---MIGAGAKILGNIEVGKYAKI 216 (241)
T ss_dssp TCEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSSC-SSCSCEECTTC---EECTTCEEESSCEECTTCEE
T ss_pred CCEEccCcccCcc--ceEEEeccceecCCeeecccccccccccCC-CCCCCccCCCe---EECCCCEEcCCcEECCCCEE
Confidence 3455666666530 157788888888888877766655421111 11334444444 344444432 4444444444
Q ss_pred CCCcEEe
Q 010006 478 GDNVKIV 484 (520)
Q Consensus 478 g~~~~i~ 484 (520)
|+|+++.
T Consensus 217 gAgsvV~ 223 (241)
T d1ssqa_ 217 GANSVVL 223 (241)
T ss_dssp CTTCEEC
T ss_pred CCCCEEC
Confidence 4444443
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.27 E-value=1.7e-06 Score=84.66 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=29.2
Q ss_pred cCCCccccCCCcCCCceee-cccc-cceEECCCcEEeeeEEe-eeEECCCCEECCCCEEcccEE
Q 010006 375 DRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLL 435 (520)
Q Consensus 375 ~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~g~~I~~~~i~-~s~Ig~~~~Ig~~~~I~~~~i 435 (520)
|+.+.++..+.+..++.+. .+.| .++.|+++|+|+++.|. ++.|+.+++|+.++.++++.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i 124 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAI 124 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEE
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEE
Confidence 4444555555555555443 1222 34555555555443333 455555555555544444333
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=2.9e-07 Score=84.70 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=10.7
Q ss_pred ceEECCCCEECCCcEEec
Q 010006 468 RAIIDKNARIGDNVKIVN 485 (520)
Q Consensus 468 ~~ii~~~~~Ig~~~~i~~ 485 (520)
.++|+++|.||.+|.|.+
T Consensus 108 ~v~Igd~v~IG~~s~I~~ 125 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMP 125 (208)
T ss_dssp CEEECTTCEECTTCEECT
T ss_pred CEEEcCCeEECccccccC
Confidence 456666666666666654
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.05 E-value=3.7e-06 Score=77.02 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=11.4
Q ss_pred eeEECCCCEECCCCEE
Q 010006 415 HSVVGLRSCISEGAII 430 (520)
Q Consensus 415 ~s~Ig~~~~Ig~~~~I 430 (520)
+..||++|.|+++|.|
T Consensus 54 ~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 54 KLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred eeEECCCCEECCCCEE
Confidence 4567777777777766
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.95 E-value=1.2e-05 Score=75.17 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=46.9
Q ss_pred cceEECCCcEEeeeEEeeeEE--CCCCEECCCCEEcccEEECCccccccccccccccCCCcceeeCCCCEE---cceEEC
Q 010006 398 TDSVIGEGCVIKNCKIHHSVV--GLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI---KRAIID 472 (520)
Q Consensus 398 ~~~~Ig~g~~I~~~~i~~s~I--g~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i---~~~ii~ 472 (520)
.++.|+++|.|+. +..| +.++.||+.+.|++.+.+.. | +++|..... +..+||
T Consensus 136 ~g~~I~~~~~Ig~----g~~i~h~~givig~~~~ig~~~~i~~---------------~---v~~~~~~~~~~~~~~~Ig 193 (241)
T d1ssqa_ 136 FDVDIHPAAKIGH----GIMFDHATGIVVGETSVIENDVSILQ---------------G---VTLGGTGKESGDRHPKVR 193 (241)
T ss_dssp HSCEECTTCEECS----SCEESSCTTCEECTTCEECTTCEECT---------------T---CEEECCSSSCSSCSCEEC
T ss_pred eeeccccCCEEcc----CcccCccceEEEeccceecCCeeecc---------------c---ccccccccCCCCCCCccC
Confidence 4567888888886 4444 44778888887776665543 1 122222111 246777
Q ss_pred CCCEECCCcEEecCCCcCCcccccCCeEEccC
Q 010006 473 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 504 (520)
Q Consensus 473 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~~ 504 (520)
+||.||.|++|.+. .++|++++|+.|
T Consensus 194 ~~v~IGaga~Ilg~------v~IG~~a~IgAg 219 (241)
T d1ssqa_ 194 EGVMIGAGAKILGN------IEVGKYAKIGAN 219 (241)
T ss_dssp TTCEECTTCEEESS------CEECTTCEECTT
T ss_pred CCeEECCCCEEcCC------cEECCCCEECCC
Confidence 77777777777653 344445555555
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=97.93 E-value=0.00028 Score=72.23 Aligned_cols=213 Identities=15% Similarity=0.213 Sum_probs=124.9
Q ss_pred cceEEEEEeCCCCCCCCccccCCCccceec--CCccchhHHHHHHhHhC----------CC-CeEEEEec-cChhHHHHH
Q 010006 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL--GANYRLIDIPVSNCLNS----------NI-SKIYVLTQ-FNSASLNRH 153 (520)
Q Consensus 88 ~~~~aIILAaG~GtRl~PlT~~~pK~Llpv--~G~~plI~~~l~~l~~~----------gi-~~I~Iv~~-~~~~~i~~~ 153 (520)
.++.+|+||||.||||+ ..-||.++|| ..++++++..++.+... ++ =.++|.+. ...+.+.++
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~ 177 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEF 177 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHH
Confidence 36999999999999997 5789999998 22348999988887542 21 24677776 456889999
Q ss_pred HHHhhhccCCC----CcCCCeEEEeecccC-----CCCCCC-ccCcHHHHHHH-----HHHhhhcCcceEEEEeCceec-
Q 010006 154 LSRAYASNMGG----YKNEGFVEVLAAQQS-----PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLY- 217 (520)
Q Consensus 154 l~~~~~~~~~~----~~~~~~v~vl~~~~~-----~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~- 217 (520)
|.+...+++.. .|....+..+..... +....| +.|.++-.... ++.+...+.+++.+...|.+.
T Consensus 178 l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~ 257 (501)
T d1jv1a_ 178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV 257 (501)
T ss_dssp HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred HHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence 99854444321 112222221111100 000011 24554433322 233444567899999999853
Q ss_pred cccHHHHHHHHHhcCCcEEEEEEecCcccCcceEEE-EeCCCCCEEEeeeCCChhhhhhcccccccccCCchhhccCCce
Q 010006 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLM-KIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (520)
Q Consensus 218 ~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v-~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (520)
..---.++-.+...++++.+-+.+...... .-|.+ ..|..-+|+++.+-|........ ......-..
T Consensus 258 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~e-~~G~l~~~dg~~~vvEysel~~~~~~~~~-----------~~g~l~f~~ 325 (501)
T d1jv1a_ 258 KVADPRFIGFCIQKGADCGAKVVEKTNPTE-PVGVVCRVDGVYQVVEYSEISLATAQKRS-----------SDGRLLFNA 325 (501)
T ss_dssp CTTCHHHHHHHHHTTCSEEEEEEECCSTTC-SCCEEEEETTEEEEECGGGSCHHHHHCBC-----------TTSSBSSCE
T ss_pred cccCHHHHHHHHhcccceeEEEEEcCCCCc-ccceEEEECCeEEEEEeccCCHHHHhhcc-----------CCCcccccc
Confidence 332244778888889998887777543222 33444 44433456666666554322100 000011124
Q ss_pred eeeeEEEEeHHHHHHHHhh
Q 010006 297 ASMGIYVISKDVMLNLLRD 315 (520)
Q Consensus 297 ~~~GIyifs~~vl~~ll~~ 315 (520)
.+++.++|+-++++++++.
T Consensus 326 ~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 326 GNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred cceeheeeEHHHHHHHHHh
Confidence 6788999999999988753
|