Citrus Sinensis ID: 010017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Secondary Structure (PSIPRED)
ccEEEEEccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccHHHHHHHcHHHHcccccccHHHHHHHHcccccccEEEEEEccccccccccEEcccHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccHHccccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccHHHHHHHHHHHHcccccEEEEEEccccHccccccccccEEEEHHHHHHHcHHcHHHcHHccccHccccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccEEEEcccccccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEEEcccHcccccccHHHHHHHHccccccccccccEEccccccccccccccEEEEEcccccEEEEcccccccccHHHHHHHccccHcEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHccccHHHcccEEEEccccEEccccEEc
Coil and Loop (DISEMBL)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWgkkssvapdiveeipvfsYDEIIDLGREsrkafsdsndarkhykyetigsddiatyvytsgttgnpkgvMLTHKNLLHQIRSLydivpaengdkflsmlppwhvyeRACGYFIFSRGIELMYTAVRNLKDDlqryqphymisvPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFcltrnqkqpSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIgiskagvsgggslpmHIDLFYEAIGVKVQVgygltesspviaarrptcnvlgsvghpinhteikivdaetnevlpagskgivkvrgsqvmqgyfknpsatkqaldedgwlntgdigwiaphhsrgrsrrcggvlvlegrakdtivlstgenveplELEEAALRSSLIRQIVVIgqdqrrpgaiivpdKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKwtskcsfqigpihvvdepftVNFLCLAL
Flexible Loop (DISEMBL)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGkkssvapdiveeipvFSYDEIIDLGResrkafsdsndarkhykyetigsddiaTYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGwiaphhsrgrsrrCGGVLVLegrakdtivlstgenveplELEEAALRSSLIRQIvvigqdqrrpgaiivpDKEEVLMAAKRLSIvhadaselskekTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Low Complexity Region (SEG)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSaarrvvaraliriSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHsrgrsrrcggVLVLEGRAKDTIVLSTGENVEPleleeaalRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered region (IsUnstruct)
**VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR*************KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA*
Disordered Region (DISOPRED)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSN**RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ****SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISEMBL)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISPRO)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q9LK39	722	Probable acyl-activating	yes	no	0.980	0.706	0.693	0.0
Q8W471	727	Long-chain-fatty-acid--[a	no	no	0.961	0.687	0.679	0.0
P44446	607	Putative long-chain-fatty	yes	no	0.688	0.589	0.313	2e-42
B2HGV4	600	Long-chain-fatty-acid--Co	no	no	0.636	0.551	0.311	1e-40
Q7TYX8	600	Long-chain-fatty-acid--Co	yes	no	0.628	0.545	0.310	1e-39
O53521	600	Long-chain-fatty-acid--Co	yes	no	0.628	0.545	0.307	9e-39
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.851	0.632	0.288	9e-38
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.728	0.542	0.286	2e-37
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.732	0.543	0.294	2e-37
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.748	0.556	0.282	2e-37

>sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/513 (69%), Positives = 427/513 (83%), Gaps = 3/513 (0%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+        PV+SY+EI   G+E 
Sbjct: 184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQER 242

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R  F+ SND+ K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPA
Sbjct: 243 RAKFARSNDSGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPA 301

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYET
Sbjct: 302 EAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYET 361

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLW
Sbjct: 362 LYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLW 421

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYG
Sbjct: 422 ARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYG 481

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY
Sbjct: 482 LTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGY 541

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 542 YKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVE 601

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEK 481
           PLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE 
Sbjct: 602 PLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKET 661

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 662 ITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

May be involved in the activation of fatty acids to acyl-carrier-protein.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/512 (67%), Positives = 420/512 (82%), Gaps = 12/512 (2%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VA+ V+NPEFFNRIAE+  SKA++RF+ILLWG+KSS+    ++ IPV+SY EII+ G+ES
Sbjct: 200 VAIVVDNPEFFNRIAESFTSKASLRFLILLWGEKSSLVTQGMQ-IPVYSYAEIINQGQES 258

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R   S SND R  Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA
Sbjct: 259 RAKLSASNDTRS-YRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPA 317

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           + GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYET
Sbjct: 318 QAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYET 377

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SSA R+ +A  LI++S AY   KRIYEG CLT+ QK P Y+VA +DWLW
Sbjct: 378 LYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLW 437

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYG
Sbjct: 438 ARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYG 497

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY
Sbjct: 498 LTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGY 557

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KNPS TKQ L+E GW NTGD GWIAPHHS+GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 558 YKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVE 617

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
           PLE+EEAA+RS +I QIVVIGQD+RR GAII+P+KEE    A+R+        E SKE  
Sbjct: 618 PLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD------PETSKETL 667

Query: 483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
            SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct: 668 KSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0002 PE=3 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 191/405 (47%), Gaps = 47/405 (11%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 144
           D+ T +YTSGTTG PKGVML + NL HQ+ +    +   + D  LS LP  H++ERA   
Sbjct: 186 DLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFERAWAA 245

Query: 145 FIFSRGIELMYTAVRN-LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR 203
           +I  RG  L Y    N ++  L   +P  M +VP  YE +Y+ +  ++  +   R+++  
Sbjct: 246 YILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFH 305

Query: 204 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK 263
             I +   Y         F L  N K   +L               L     LA+KLV  
Sbjct: 306 WAISVGQKY---------FDLRANNKAIPFL---------------LKKQFALADKLVLS 341

Query: 264 KIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS 322
           K++  +G   K    GG  L   I LF+ AIG+ +++GYG+TE++  ++          S
Sbjct: 342 KLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPNS 401

Query: 323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
           +G  +   E+KI   E NE+L         VRG  VM+GY+K P  T QA  EDG+L TG
Sbjct: 402 IGTLMPKAEVKI--GENNEIL---------VRGGMVMKGYYKKPEETAQAFTEDGFLKTG 450

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           D G               G L +  R K+ +  S G+ + P  +E    +   I QI +I
Sbjct: 451 DAGEFDEQ----------GNLFITDRIKELMKTSNGKYIAPQYIESKIGKDKFIEQIAII 500

Query: 443 GQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY 487
              ++   A+IVP  + +   AK+L+I + D  EL K   I  ++
Sbjct: 501 ADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMF 545

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|B2HGV4|FAC15_MYCMM Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 184/388 (47%), Gaps = 57/388 (14%)

Query: 77  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPP 134
           + + + S D AT +YTSGTTG PKG  LTH NLLH+IR   + +P     G + L  LP 
Sbjct: 174 RLDALRSSDPATLIYTSGTTGRPKGCQLTHSNLLHEIRGTQECLPTLLTPGQRLLVFLPL 233

Query: 135 WHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 193
            HV  RA     F+  + + +T+ ++NL      ++P  ++SVP V+E +Y+  ++    
Sbjct: 234 AHVLARALTLSAFASKVTVGFTSDIKNLLPLFAVFKPTVVVSVPRVFEKVYNTAEQNASN 293

Query: 194 SS--AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 251
               A  ++ A+  +  S A+              +  +P  L               L 
Sbjct: 294 DGKGAIFKLAAQTAVDWSRAW--------------DDGRPGLL---------------LR 324

Query: 252 PLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI 310
             H L ++LVY K+++A+G    A VSGG  L   +  FY  +G+ +  GYGLTE+S  +
Sbjct: 325 AKHALFDRLVYHKLRAALGGDCHAAVSGGAPLGARLGHFYRGVGLTIYEGYGLTETSAAV 384

Query: 311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 370
              +     +G+VG  +    ++I D            G + VRG  V  GY++N  AT 
Sbjct: 385 TVNQIDALKIGTVGKLVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATD 433

Query: 371 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 430
           +A   DGW  TGD+G I             G L + GR K+ IV + G+NV P  LE+  
Sbjct: 434 EAF-TDGWFRTGDLGAIDDD----------GFLSITGRKKELIVTAGGKNVAPAVLEDQL 482

Query: 431 LRSSLIRQIVVIGQDQRRPGAIIVPDKE 458
               LI Q +V+G  +   GA+I  D E
Sbjct: 483 RAHPLISQAMVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7TYX8|FAC15_MYCBO Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD15 PE=3 SV=2

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 53/380 (13%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 140
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 141 ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 199
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 200 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 259
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 260 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 318
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+E+S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSETSGGVAISQFNDL 392

Query: 319 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 378
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 379 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 438
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 439 IVVIGQDQRRPGAIIVPDKE 458
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium bovis (taxid: 1765)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53521|FAC15_MYCTU Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium tuberculosis GN=fadD15 PE=1 SV=3

 Score =  161 bits (408), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 180/380 (47%), Gaps = 53/380 (13%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 140
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 141 ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 199
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 200 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 259
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 260 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 318
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+ +S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSGTSGGVAISQFNDL 392

Query: 319 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 378
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 379 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 438
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 439 IVVIGQDQRRPGAIIVPDKE 458
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  158 bits (400), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 151/523 (28%), Positives = 230/523 (43%), Gaps = 80/523 (15%)

Query: 10  PEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEE--IPVFSYDEIIDLGRESRKAFS 67
           P+  N +   L    ++R I+++ G    + P +     + + SY +++  GR S   FS
Sbjct: 198 PQTLNILLSFLAEIPSIRLIVVVGGADEHL-PSLPRGTGVTIVSYQKLLSQGRSSLHPFS 256

Query: 68  DSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NG 125
                           +DIAT  YTSGTTG PKGV+LTH NL+  +      V AE    
Sbjct: 257 PPK------------PEDIATICYTSGTTGTPKGVVLTHGNLIANVAG--SSVEAEFFPS 302

Query: 126 DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETL 183
           D ++S LP  H+YERA        G+ + +    V  L DD    +P    SVP +Y  +
Sbjct: 303 DVYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRI 362

Query: 184 YSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 243
           Y GI   + +S     VV + L  I  AY + K+         N + PS           
Sbjct: 363 YDGITSAVKSSG----VVKKRLFEI--AYNSKKQA------IINGRTPS----------- 399

Query: 244 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVG 300
                  W      +KLV+ KI+  +G  +    G G+ P+    +D      G  V+ G
Sbjct: 400 -----AFW------DKLVFNKIKEKLG-GRVRFMGSGASPLSPDVMDFLRICFGCSVREG 447

Query: 301 YGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGS 356
           YG+TE+S VI+A     N+ G VG P    E+K+VD      T++  P   +G + VRG 
Sbjct: 448 YGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPY-PRGEICVRGP 506

Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 416
            + +GY+K+   T++ LD DGWL+TGDIG   P          GG L +  R K+   L+
Sbjct: 507 IIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLA 556

Query: 417 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA-AKRLSIVHADAS 475
            GE + P ++E    +   + Q  + G         IV    EV+   A    I +    
Sbjct: 557 QGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEHLG 616

Query: 476 ELSKE----KTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTV 513
           +L  +    KT+     +L +      F+    + +V EPFT+
Sbjct: 617 QLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTL 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 198/446 (44%), Gaps = 67/446 (15%)

Query: 47  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 106
           + V S   + DLGR +R+            K +    +D+A   +TSGTTGNPKG M+TH
Sbjct: 243 VEVTSMKAMEDLGRANRR------------KPKPPAPEDLAVICFTSGTTGNPKGAMVTH 290

Query: 107 KNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRN 160
           +N++      +++  + V     D  +S LP  H++ER     +   G ++ +    +R 
Sbjct: 291 RNIVSDCSAFVKATENTVNPCPDDTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRL 350

Query: 161 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE 220
           L DDL+  QP     VP +   ++  I  Q                    A T  KR   
Sbjct: 351 LMDDLKVLQPTVFPVVPRLLNRMFDRIFGQ--------------------ANTTLKRWLL 390

Query: 221 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGG 279
            F   R + +    +   + LW R               L++ K+QS++G   +  V+G 
Sbjct: 391 DFASKRKEAELRSGIIRNNSLWDR---------------LIFHKVQSSLGGRVRLMVTGA 435

Query: 280 GSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE 338
             +   +  F  A +G +   GYG TE +       P     G VG P+    IK+VD E
Sbjct: 436 APVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVE 495

Query: 339 TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 398
               + A  +G V V+G  V QGY K+P+ T +ALD+DGWL+TGDIG   P+        
Sbjct: 496 EMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPN-------- 547

Query: 399 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDK 457
             G L +  R K    L+ GE + P ++E   +RS  + Q+ V G+  Q    AI+VPD 
Sbjct: 548 --GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDV 605

Query: 458 EEVLMAAKRLSIVHADASELSKEKTI 483
           E +   A++         EL + K +
Sbjct: 606 ETLCSWAQKRGF-EGSFEELCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 196/445 (44%), Gaps = 64/445 (14%)

Query: 47  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 106
           + V SY  +++ GR + + F                 DD+AT  YTSGTTG PKGV+LTH
Sbjct: 236 VKVVSYSVLLNQGRSNPQRFFPPK------------PDDVATICYTSGTTGTPKGVVLTH 283

Query: 107 KNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DD 164
            NL+  +      V   + D ++S LP  H+YERA        G+ + +    N+K  DD
Sbjct: 284 ANLIANVAGSSFSVKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDD 343

Query: 165 LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL 224
           L   +P    SVP +Y  +Y+GI   + TS   +  +  A      AY A K+       
Sbjct: 344 LAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNA------AYNAKKQ------- 390

Query: 225 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS--L 282
                      AL++   A  I    W      ++LV+ KI+  +G     ++ G S   
Sbjct: 391 -----------ALLNGKSASPI----W------DRLVFNKIKDRLGGRVRFMTSGASPLS 429

Query: 283 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 342
           P  ++      G +V  GYG+TE+S VI+      N+ G VG P    E+K+VD      
Sbjct: 430 PEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 343 LPAGS---KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 399
             A     +G + VRG  +  GY+K+   TK+ +DEDGWL+TGDIG   P          
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLP---------- 539

Query: 400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 459
           GG L +  R K+   L+ GE + P ++E    +   + Q  + G         +V    +
Sbjct: 540 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPD 599

Query: 460 VLMA-AKRLSIVHADASELSKEKTI 483
           VL + A    I   D  EL     +
Sbjct: 600 VLKSWAASEGIKGGDLRELCNNPRV 624

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 206/463 (44%), Gaps = 74/463 (15%)

Query: 37  SSVAPDIVEE-----IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 91
            S   D+VE      + + S   + DLGR +R             K +    +D+A   +
Sbjct: 229 DSYGSDLVERGKKCGVEIISLKALEDLGRVNR------------VKPKPPEPEDLAIICF 276

Query: 92  TSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF 147
           TSGTTGNPKG M+TH+N+++     I++      A   D  +S LP  H++E      + 
Sbjct: 277 TSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLPLAHMFETVVECVML 336

Query: 148 SRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 205
             G ++ +    +R L DDL+  QP     VP +   ++  I  Q               
Sbjct: 337 CHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQ--------------- 381

Query: 206 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 265
                A T+ KR    F   R + +    +   + LW               +KL++ KI
Sbjct: 382 -----ANTSLKRWLLDFASKRKEAELRSGIVRNNSLW---------------DKLIFHKI 421

Query: 266 QSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS 322
           QS++G  K  +   G+ P+    +     A+G +   GYG TE +       P     G 
Sbjct: 422 QSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWTAGH 480

Query: 323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
           VG P+    +K+VD E    L +  +G V V+G+ V +GY K+P+ T +ALD+DGWL+TG
Sbjct: 481 VGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTG 540

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           DIG   P+          G L +  R K    L+ GE + P ++E   LRS  + Q+ V 
Sbjct: 541 DIGKWLPN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVH 590

Query: 443 GQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 484
           G+  Q    A++VPD E +   A++  +      EL + K I+
Sbjct: 591 GESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
224129204	706	predicted protein [Populus trichocarpa]	0.986	0.726	0.750	0.0
296089272	730	unnamed protein product [Vitis vinifera]	0.986	0.702	0.736	0.0
225439252	691	PREDICTED: long-chain-fatty-acid--CoA li	0.984	0.740	0.738	0.0
224055821	694	predicted protein [Populus trichocarpa]	0.986	0.739	0.730	0.0
356512427	733	PREDICTED: putative acyl-CoA synthetase	0.984	0.698	0.703	0.0
449527657	672	PREDICTED: probable acyl-activating enzy	0.984	0.761	0.683	0.0
449441378	731	PREDICTED: probable acyl-activating enzy	0.984	0.700	0.683	0.0
22331297	722	AMP-dependent synthetase and ligase fami	0.980	0.706	0.693	0.0
20799733	722	acyl-CoA synthetase-like protein [Arabid	0.980	0.706	0.693	0.0
297835432	722	hypothetical protein ARALYDRAFT_898924 [	0.980	0.706	0.692	0.0

>gi|224129204|ref|XP_002328916.1| predicted protein [Populus trichocarpa] gi|222839346|gb|EEE77683.1| predicted protein [Populus trichocarpa]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/513 (75%), Positives = 443/513 (86%)

Query: 2   CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 61
            VALAV+NPE FNRI ET CSKAA RF+ILLWG+KS +A + +E IP+FSY EIIDLG+E
Sbjct: 166 SVALAVDNPELFNRIVETFCSKAAPRFVILLWGEKSHLAINRMEGIPIFSYKEIIDLGQE 225

Query: 62  SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP 121
           S KAFSDS+DAR+HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI +L+D+VP
Sbjct: 226 SCKAFSDSDDARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQINNLWDVVP 285

Query: 122 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYE 181
           A+  D+FLSMLPPWH YERA  YFIF+ G E +YT VRNLK DLQ+YQPHY+I+VPLV+E
Sbjct: 286 AQPADRFLSMLPPWHAYERAAEYFIFTHGTEQVYTTVRNLKVDLQQYQPHYLITVPLVFE 345

Query: 182 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 241
           TLYSGIQKQ+ TSSA R+++A   I+IS  Y   KRIYEG  L R++K+P Y V+++DWL
Sbjct: 346 TLYSGIQKQLSTSSALRKILAFMFIKISLTYMEMKRIYEGTYLVRSRKEPPYFVSMLDWL 405

Query: 242 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGY 301
           WARII AIL P+H+LA+KLVY KI SAIGISKAGVSGGGSLP H+D F+EAIGV VQ GY
Sbjct: 406 WARIIAAILLPVHMLAKKLVYSKIHSAIGISKAGVSGGGSLPSHVDKFFEAIGVVVQNGY 465

Query: 302 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 361
           G+TESSPV AARRP+ NVLGS+G PI HTE KIVDAET E LP GSKGIVKVRG QVM+G
Sbjct: 466 GMTESSPVTAARRPSNNVLGSIGLPIRHTEFKIVDAETGEALPHGSKGIVKVRGPQVMKG 525

Query: 362 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 421
           Y+KNP ATKQA+DEDGWLN+GDIGWIAP+HSRGRSR CGGV+VLEGRAKDTIVL TGENV
Sbjct: 526 YYKNPLATKQAVDEDGWLNSGDIGWIAPYHSRGRSRHCGGVIVLEGRAKDTIVLLTGENV 585

Query: 422 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEK 481
           EPLELEEAA+RSSLI+QIVVIGQDQRR GAI+VP+K+EVL AAK+ SIV  DA+ELSK++
Sbjct: 586 EPLELEEAAMRSSLIQQIVVIGQDQRRLGAIVVPNKDEVLEAAKKWSIVDPDATELSKKQ 645

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             SLL  ELRKWTS CSFQIGPI V+DEPFT++
Sbjct: 646 ITSLLNEELRKWTSGCSFQIGPILVIDEPFTID 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089272|emb|CBI39044.3| unnamed protein product [Vitis vinifera]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/513 (73%), Positives = 437/513 (85%)

Query: 2   CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 61
            VALAV+NPE F RIAET CS+AA+RF++LLWG+KS +  ++++ +PVF+Y EIIDLGRE
Sbjct: 190 SVALAVDNPELFGRIAETFCSRAAIRFVVLLWGEKSCLPSEVMDRVPVFNYKEIIDLGRE 249

Query: 62  SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP 121
            R  F DS+ ARK+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVP
Sbjct: 250 CRSVFLDSHYARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVP 309

Query: 122 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYE 181
           AE GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYE
Sbjct: 310 AEPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYE 369

Query: 182 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 241
           TLYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWL
Sbjct: 370 TLYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWL 429

Query: 242 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGY 301
           WA+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GY
Sbjct: 430 WAKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGY 489

Query: 302 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 361
           GLTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+G
Sbjct: 490 GLTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKG 549

Query: 362 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 421
           Y+KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENV
Sbjct: 550 YYKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENV 609

Query: 422 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEK 481
           EP ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK
Sbjct: 610 EPTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEK 669

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
              LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 670 ITGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439252|ref|XP_002263501.1| PREDICTED: long-chain-fatty-acid--CoA ligase FadD15-like [Vitis vinifera]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/512 (73%), Positives = 437/512 (85%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VALAV+NPE F RIAET CS+AA+RF++LLWG+KS +  ++++ +PVF+Y EIIDLGRE 
Sbjct: 152 VALAVDNPELFGRIAETFCSRAAIRFVVLLWGEKSCLPSEVMDRVPVFNYKEIIDLGREC 211

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R  F DS+ ARK+Y YE I S+DIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA
Sbjct: 212 RSVFLDSHYARKNYIYEAISSNDIATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVPA 271

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E GD+FLSMLP WH YERA  YFIF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYET
Sbjct: 272 EPGDRFLSMLPSWHAYERASEYFIFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYET 331

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI TSS  R++VA   IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWLW
Sbjct: 332 LYSGIQKQISTSSTVRKLVALTFIRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWLW 391

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           A+II AILWP+H+L +KLVY KI SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GYG
Sbjct: 392 AKIIAAILWPVHMLGKKLVYSKIHSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGYG 451

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE SPV AARRPTCNVLGSVGHPI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+GY
Sbjct: 452 LTECSPVTAARRPTCNVLGSVGHPIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKGY 511

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KN  ATK+ LDEDGWLNTGDIGWIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 512 YKNELATKKVLDEDGWLNTGDIGWIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENVE 571

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
           P ELEEAA+RS+LI+QIVVIGQDQRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK 
Sbjct: 572 PTELEEAAMRSTLIQQIVVIGQDQRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEKI 631

Query: 483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             LL+ E+R WT   SFQIGPI VVDEPFT++
Sbjct: 632 TGLLHEEIRTWTEGFSFQIGPILVVDEPFTID 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055821|ref|XP_002298670.1| predicted protein [Populus trichocarpa] gi|222845928|gb|EEE83475.1| predicted protein [Populus trichocarpa]

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/513 (73%), Positives = 437/513 (85%)

Query: 2   CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 61
            VALAV+NPE FNRIAET  S AA RF+ILLWG+KSS+  + +E IP+F+Y EIIDLGRE
Sbjct: 154 SVALAVDNPELFNRIAETFSSNAAPRFVILLWGEKSSLTINAMEGIPIFNYKEIIDLGRE 213

Query: 62  SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP 121
           SRKAF DS DAR+HYKYETI SDDIAT VYTSGTTGNPKGVMLTHKNLLHQI + ++IVP
Sbjct: 214 SRKAFFDSGDARQHYKYETISSDDIATLVYTSGTTGNPKGVMLTHKNLLHQINNFWEIVP 273

Query: 122 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYE 181
           A+  D+FLSMLPPWH YERAC YFIF+ G E +YT VRN K DLQ+YQPHY+ISVPLV+E
Sbjct: 274 AQPADRFLSMLPPWHAYERACEYFIFANGAEQVYTTVRNFKVDLQQYQPHYLISVPLVFE 333

Query: 182 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 241
           TLYSGIQKQI  SS  R+++A   I+IS AY   KRIYEG  LTR+Q + SY V+++ WL
Sbjct: 334 TLYSGIQKQISKSSTLRKLLAFTFIKISLAYMEMKRIYEGTYLTRSQNEQSYFVSILGWL 393

Query: 242 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGY 301
            ARI  AIL P+H+LAEKLVY KIQSAIGI KAGVSGGGSLP H+D F+EAIGV +  GY
Sbjct: 394 RARIFAAILLPVHMLAEKLVYSKIQSAIGIRKAGVSGGGSLPAHVDKFFEAIGVVLLNGY 453

Query: 302 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 361
           G+TESSPV+AAR+ + NVLGSVGHPI HTE KIVDAET + LP GSKGIV+VRG QVM+G
Sbjct: 454 GMTESSPVLAARQLSNNVLGSVGHPIRHTEFKIVDAETGKSLPYGSKGIVRVRGPQVMKG 513

Query: 362 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENV 421
           Y+KNP ATKQA+DEDGWLNTGD+GWIAP+HSRG+S RCGG++VLEGRAKDTIVLSTGENV
Sbjct: 514 YYKNPLATKQAVDEDGWLNTGDLGWIAPYHSRGKSCRCGGIIVLEGRAKDTIVLSTGENV 573

Query: 422 EPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEK 481
           EPLELEEAA++SSLI+QIVVIGQDQRR GAI+VP+KEEVL  AK+LSIV ADA+ELSK++
Sbjct: 574 EPLELEEAAMKSSLIQQIVVIGQDQRRLGAIVVPNKEEVLEVAKKLSIVDADATELSKKQ 633

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             +LL  ELRKWTS+ SFQIGP+ V+DE FT++
Sbjct: 634 IANLLDKELRKWTSEASFQIGPVLVIDESFTID 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512427|ref|XP_003524920.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/512 (70%), Positives = 432/512 (84%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPE FNR+A T  S+ +MRFIILLWG+K+ +     + +PVF++ E+IDLGR+S
Sbjct: 194 VALVVDNPEMFNRVANTFYSRTSMRFIILLWGEKAELVGQENKHVPVFTFMEVIDLGRQS 253

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R+A S+++DA + Y YE I +D IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA
Sbjct: 254 RRALSNAHDAGQRYIYEAINTDSIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPA 313

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E GD+FLSMLPPWH YERAC YFIF+ GIE +YT VRNLKDDLQRYQP Y+ISVPLV+ET
Sbjct: 314 EAGDRFLSMLPPWHAYERACEYFIFTCGIEQVYTTVRNLKDDLQRYQPQYLISVPLVFET 373

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGI KQI T S  R++VA   IR S AY  +KRIYEG CLT+N+KQ SY  +++DWLW
Sbjct: 374 LYSGIMKQISTGSVVRKLVALTFIRSSIAYMEYKRIYEGKCLTKNKKQASYAYSMLDWLW 433

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR I  IL PLH+LA+KLVY KI SAIGISKAG+SGGGSLP  +D F+EAIGVKVQ GYG
Sbjct: 434 ARTIATILLPLHILAKKLVYSKIHSAIGISKAGISGGGSLPWEVDKFFEAIGVKVQNGYG 493

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPVIAARRP CNV+GSVGHPI HTE KIVD+ET+EVLP GSKGI+KVRG QVM+GY
Sbjct: 494 LTETSPVIAARRPRCNVIGSVGHPIRHTEFKIVDSETDEVLPPGSKGILKVRGPQVMEGY 553

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           FKN  AT QALD DGWLNTGDIGWI PHHS GRSR   GV+V+EGRAKDTIVLSTGENVE
Sbjct: 554 FKNSLATNQALDGDGWLNTGDIGWIVPHHSTGRSRNSSGVIVVEGRAKDTIVLSTGENVE 613

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
           PLELEEAA+RSS+I+QIVV+GQD+RR GA+IVP+KEEVL  A++LSI+ +++S++S+EK 
Sbjct: 614 PLELEEAAMRSSIIQQIVVVGQDKRRLGAVIVPNKEEVLKVARKLSIIDSNSSDVSEEKV 673

Query: 483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
            SL+Y EL+ WTS+  FQIGPI +V+EPFT++
Sbjct: 674 TSLIYKELKTWTSESPFQIGPILLVNEPFTID 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527657|ref|XP_004170826.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like, partial [Cucumis sativus]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/512 (68%), Positives = 427/512 (83%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPE FNRI ET   K +MR +ILLWG+KSS+A + V+ I VF Y++I+D+GRES
Sbjct: 133 VALVVDNPELFNRIVETFHLKTSMRCVILLWGEKSSLANEGVDGITVFDYNDIMDMGRES 192

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           RK    S+DA++ Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA
Sbjct: 193 RKVMLGSHDAKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPA 252

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           + GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYET
Sbjct: 253 KVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYET 312

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+
Sbjct: 313 LYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLF 372

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYG
Sbjct: 373 ARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYG 432

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+VRG QVM+GY
Sbjct: 433 LTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGY 492

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVE
Sbjct: 493 YKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVE 552

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
           P  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   +  S++S E  
Sbjct: 553 PTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETL 612

Query: 483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
            +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 613 TNLIYSEVRKWTSECPFQIGPILIVNEPFTID 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441378|ref|XP_004138459.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Cucumis sativus]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/512 (68%), Positives = 427/512 (83%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPE FNRI ET   K +MR +ILLWG+KSS+A + V+ I VF Y++I+D+GRES
Sbjct: 192 VALVVDNPELFNRIVETFHLKTSMRCVILLWGEKSSLANEGVDGITVFDYNDIMDMGRES 251

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           RK    S+DA++ Y YE I SDDIAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA
Sbjct: 252 RKVMLGSHDAKQCYTYEPINSDDIATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPA 311

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           + GDKFLSMLPPWH YERAC YFIF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYET
Sbjct: 312 KVGDKFLSMLPPWHAYERACEYFIFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYET 371

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SS  R+++  A I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+
Sbjct: 372 LYSGIQKQILASSNLRKLIVLAFINVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLF 431

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR+  +ILWP+H+LA+ +VY K+QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYG
Sbjct: 432 ARMTASILWPIHMLAKIIVYSKVQSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYG 491

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE SPV+AARRPTCNVLGSVGHPI HTE +IVD ET + LP GS+GIV+VRG QVM+GY
Sbjct: 492 LTECSPVVAARRPTCNVLGSVGHPIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGY 551

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KN SAT+Q LD++GW ++GDIGWIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVE
Sbjct: 552 YKNSSATQQVLDKEGWFSSGDIGWIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVE 611

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
           P  +EEAA+RS+LI+QIVVIGQDQRR GAI+ P+KEEVL AAK+LS   +  S++S E  
Sbjct: 612 PTVIEEAAMRSTLIQQIVVIGQDQRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETL 671

Query: 483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
            +L+Y E+RKWTS+C FQIGPI +V+EPFT++
Sbjct: 672 TNLIYSEVRKWTSECPFQIGPILIVNEPFTID 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331297|ref|NP_189021.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|75311239|sp|Q9LK39.1|AAE16_ARATH RecName: Full=Probable acyl-activating enzyme 16, chloroplastic; Flags: Precursor gi|9293952|dbj|BAB01855.1| long-chain-fatty-acid CoA ligase [Arabidopsis thaliana] gi|332643293|gb|AEE76814.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/513 (69%), Positives = 427/513 (83%), Gaps = 3/513 (0%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+        PV+SY+EI   G+E 
Sbjct: 184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQER 242

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R  F+ SND+ K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPA
Sbjct: 243 RAKFARSNDSGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPA 301

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYET
Sbjct: 302 EAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYET 361

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLW
Sbjct: 362 LYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLW 421

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYG
Sbjct: 422 ARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYG 481

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY
Sbjct: 482 LTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGY 541

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 542 YKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVE 601

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEK 481
           PLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE 
Sbjct: 602 PLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKET 661

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 662 ITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20799733|gb|AAM28629.1|AF503771_1 acyl-CoA synthetase-like protein [Arabidopsis thaliana]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/513 (69%), Positives = 427/513 (83%), Gaps = 3/513 (0%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+        PV+SY+EI   G+E 
Sbjct: 184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQER 242

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R  F+ SND+ K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPA
Sbjct: 243 RAKFARSNDSGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPA 301

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYET
Sbjct: 302 EAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYET 361

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI  SS AR+ +A  LI++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLW
Sbjct: 362 LYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLW 421

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYG
Sbjct: 422 ARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYG 481

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY
Sbjct: 482 LTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGY 541

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 542 YKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVE 601

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEK 481
           PLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE 
Sbjct: 602 PLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKET 661

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 662 ITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835432|ref|XP_002885598.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata] gi|297331438|gb|EFH61857.1| hypothetical protein ARALYDRAFT_898924 [Arabidopsis lyrata subsp. lyrata]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/513 (69%), Positives = 428/513 (83%), Gaps = 3/513 (0%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
           VAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+    +   PV+SY+EI + G+E 
Sbjct: 184 VALVVDNPEFFNRIAESFSCKAAPKFVILLWGEKSSLVTAGMP-TPVYSYNEIKNFGQER 242

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
           R  F+ SNDA K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPA
Sbjct: 243 RAKFARSNDAGK-YEYEFIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPA 301

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
           E G++FLSMLP WH YERAC YFIF+ G+E  YT++R LK DL++YQPHY+ISVPLVYET
Sbjct: 302 EAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKGDLKQYQPHYLISVPLVYET 361

Query: 183 LYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
           LYSGIQKQI TSS  R+ +A  LI++S AYT  KRIYEG CLT+NQK P Y+V+L+DWLW
Sbjct: 362 LYSGIQKQISTSSPVRKFLALTLIKVSLAYTEMKRIYEGLCLTKNQKPPLYIVSLVDWLW 421

Query: 243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
           AR++  +LWPLH+LAEKLV+KKI+S+IGI+KAGVSGGGSLPMH+D F+EAI V VQ GYG
Sbjct: 422 ARVVAFVLWPLHILAEKLVHKKIRSSIGITKAGVSGGGSLPMHVDKFFEAISVNVQNGYG 481

Query: 303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
           LTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY
Sbjct: 482 LTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGY 541

Query: 363 FKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE 422
           +KNP ATKQ +D+DGW NTGD+GWI P HS GRSR CGGV+VLEGRAKDTIVLSTGENVE
Sbjct: 542 YKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVE 601

Query: 423 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEK 481
           PLE+EEAA+RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V  + +ELSKE+
Sbjct: 602 PLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDPEVNELSKER 661

Query: 482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
             S++Y EL+KWTS+CSFQ+GP+ +VDEPFT++
Sbjct: 662 ITSMVYEELKKWTSQCSFQVGPVLIVDEPFTID 694

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2095173	722	AAE16 "acyl activating enzyme	0.980	0.706	0.656	5.4e-182
TAIR|locus:2129371	727	AAE15 "acyl-activating enzyme	0.961	0.687	0.642	2e-175
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.413	0.307	0.339	6.5e-33
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.471	0.348	0.303	9.8e-33
UNIPROTKB|B7Z452	698	ACSL1 "Long-chain-fatty-acid--	0.415	0.309	0.323	2.7e-32
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.413	0.307	0.347	3.7e-32
UNIPROTKB|Q9KP89	601	VC_2484 "Long-chain-fatty-acid	0.438	0.379	0.303	4.6e-32
TIGR_CMR|VC_2484	601	VC_2484 "long-chain-fatty-acid	0.438	0.379	0.303	4.6e-32
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.467	0.347	0.285	4.7e-32
UNIPROTKB|B7Z3Z9	527	ACSL1 "Long-chain-fatty-acid--	0.415	0.409	0.323	5e-32

TAIR|locus:2095173 AAE16 "acyl activating enzyme 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 337/513 (65%), Positives = 402/513 (78%)

Query:     3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
             VAL V+NPEFFNRIAE+   KAA +F+ILLWG+KSS+        PV+SY+EI   G+E 
Sbjct:   184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLVT-AGRHTPVYSYNEIKKFGQER 242

Query:    63 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
             R  F+ SND+ K Y+YE I  DDIAT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPA
Sbjct:   243 RAKFARSNDSGK-YEYEYIDPDDIATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPA 301

Query:   123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
             E G++FLSMLP WH YERAC YFIF+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYET
Sbjct:   302 EAGERFLSMLPSWHAYERACEYFIFTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYET 361

Query:   183 LYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
             LYSGIQKQI  SS             S AYT  KR+YEG CLT+NQK P Y+V+L+DWLW
Sbjct:   362 LYSGIQKQISASSPARKFLALTLIKVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLW 421

Query:   243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
             AR++   LWPLH+LAEKLV++KI+S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYG
Sbjct:   422 ARVVAFFLWPLHMLAEKLVHRKIRSSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYG 481

Query:   303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
             LTE+SPV++ARR  CNVLGSVGHPI  TE KIVD ET  VLP GSKGIVKVRG  VM+GY
Sbjct:   482 LTETSPVVSARRLRCNVLGSVGHPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGY 541

Query:   363 FKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVE 422
             +KNP ATKQ +D+DGW NTGD+GWI P H          V+VLEGRAKDTIVLSTGENVE
Sbjct:   542 YKNPLATKQVIDDDGWFNTGDMGWITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVE 601

Query:   423 PXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEK 481
             P        RS+LI+QIVVIGQDQRR GAI++P+KE    AAK ++S V ++ +ELSKE 
Sbjct:   602 PLEIEEAAMRSNLIQQIVVIGQDQRRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKET 661

Query:   482 TISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
               S++Y ELRKWTS+CSFQ+GP+ +VDEPFT++
Sbjct:   662 ITSMVYEELRKWTSQCSFQVGPVLIVDEPFTID 694

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2129371 AAE15 "acyl-activating enzyme 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 329/512 (64%), Positives = 394/512 (76%)

Query:     3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
             VA+ V+NPEFFNRIAE+  SKA++RF+ILLWG+KSS+    ++ IPV+SY EII+ G+ES
Sbjct:   200 VAIVVDNPEFFNRIAESFTSKASLRFLILLWGEKSSLVTQGMQ-IPVYSYAEIINQGQES 258

Query:    63 RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
             R   S SND R  Y+ + I SDD A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA
Sbjct:   259 RAKLSASNDTRS-YRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPA 317

Query:   123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYET 182
             + GDKFLSMLP WH YERA  YFIF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYET
Sbjct:   318 QAGDKFLSMLPSWHAYERASEYFIFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYET 377

Query:   183 LYSGIQKQIFTSSXXXXXXXXXXXXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW 242
             LYSGIQKQI  SS             S AY   KRIYEG CLT+ QK P Y+VA +DWLW
Sbjct:   378 LYSGIQKQISASSAGRKFLALTLIKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLW 437

Query:   243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYG 302
             AR+I A+LWPLH+LA+KL+YKKI S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYG
Sbjct:   438 ARVIAALLWPLHMLAKKLIYKKIHSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYG 497

Query:   303 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGY 362
             LTE+SPV+ AR  +CNVLGS GHP++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY
Sbjct:   498 LTETSPVVCARTLSCNVLGSAGHPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGY 557

Query:   363 FKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVE 422
             +KNPS TKQ L+E GW NTGD GWIAPHH          V+VLEGRAKDTIVLSTGENVE
Sbjct:   558 YKNPSTTKQVLNESGWFNTGDTGWIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVE 617

Query:   423 PXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 482
             P        RS +I QIVVIGQD+RR GAII+P+KEE    A+R+        E SKE  
Sbjct:   618 PLEIEEAAMRSRVIEQIVVIGQDRRRLGAIIIPNKEE----AQRVD------PETSKETL 667

Query:   483 ISLLYGELRKWTSKCSFQIGPIHVVDEPFTVN 514
              SL+Y ELRKWTS+CSFQ+GP+ +VD+PFT++
Sbjct:   668 KSLVYQELRKWTSECSFQVGPVLIVDDPFTID 699

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008922 "long-chain fatty acid [acyl-carrier-protein

GO:0009536 "plastid" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
 Identities = 79/233 (33%), Positives = 116/233 (49%)

Query:   256 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 312
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   + 
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSL 470

Query:   313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 372
               P     G VG P+  + IK+VD E    L A  +G V V+G  V QGY K+P+ T +A
Sbjct:   471 TVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEA 530

Query:   373 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 431
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   432 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 483
             RS  + Q+ V G+  Q    AI+VPD E +   A++   V     EL + K +
Sbjct:   580 RSEPVAQVFVHGESLQAFLIAIVVPDVETLGHWAQKRGFV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 9.8e-33, Sum P(2) = 9.8e-33
 Identities = 80/264 (30%), Positives = 123/264 (46%)

Query:   258 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP 315
             +KLV+KK+  A G + +  V G   L  ++  F   A+G  V  GYG TE +  I     
Sbjct:   420 DKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQ 479

Query:   316 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 375
               +V   VG P++   +K+VD    E     + G V VRGS V  GY+K+P  T +A+D 
Sbjct:   480 GDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDS 539

Query:   376 DGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSL 435
             +GW +TGD+G   P+            L +  R K    LS GE + P         S  
Sbjct:   540 EGWHHTGDVGMWLPN----------GTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQY 589

Query:   436 IRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKW 493
             + Q+ V G+  +    A++VPD + VL      + V    S L   K +  L+  ++  W
Sbjct:   590 VNQVYVYGESLKSCIIAVVVPDTD-VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNW 648

Query:   494 TSKC---SF-QIGPIHVVDEPFTV 513
               +    SF Q+  I++  +PF+V
Sbjct:   649 GKQSGLKSFEQVKDIYLHPDPFSV 672

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|B7Z452 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
 Identities = 75/232 (32%), Positives = 113/232 (48%)

Query:   256 LAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAAR 313
             L ++L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +      
Sbjct:   411 LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLT 470

Query:   314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 373
              P     G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +AL
Sbjct:   471 MPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEAL 530

Query:   374 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 432
             D+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        R
Sbjct:   531 DKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMR 579

Query:   433 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 483
             S  + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct:   580 SEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 630

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
 Identities = 81/233 (34%), Positives = 115/233 (49%)

Query:   256 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 312
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCL 470

Query:   313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 372
                     G VG P+  + IK+VD E    L A  +G V V+GS V QGY K+P  T +A
Sbjct:   471 TVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDPVKTAEA 530

Query:   373 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 431
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYQ 579

Query:   432 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 483
             RS  I Q+ V G+  Q    AI+VPD E +   A++  IV     EL + K +
Sbjct:   580 RSEPIAQVFVHGESLQAFLIAIVVPDVETLGTWAQKRGIV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9KP89 VC_2484 "Long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 247 (92.0 bits), Expect = 4.6e-32, Sum P(2) = 4.6e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   254 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 311
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 371
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   372 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 431
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   432 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 483
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   484 SLLYGELRKWTSKCSFQIGP 503
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|VC_2484 VC_2484 "long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 247 (92.0 bits), Expect = 4.6e-32, Sum P(2) = 4.6e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   254 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 311
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 371
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   372 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 431
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   432 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 483
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   484 SLLYGELRKWTSKCSFQIGP 503
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
 Identities = 77/270 (28%), Positives = 127/270 (47%)

Query:   258 EKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYE-AIGVKVQVGYGLTESSPVIAARR 314
             +KLV+ KI+  +G  +    G G+ P+  D+  F     G  V+ GYG+TE+S VI+A  
Sbjct:   403 DKLVFNKIKEKLG-GRVRFMGSGASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMD 461

Query:   315 PTCNVLGSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 370
                N+ G VG P    E+K+VD      T++  P   +G + VRG  + +GY+K+   T+
Sbjct:   462 DGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPY-PRGEICVRGPIIFKGYYKDEEQTR 520

Query:   371 QALDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXX 429
             + LD DGWL+TGDIG W+ P            + +++ R K+   L+ GE + P      
Sbjct:   521 EILDGDGWLHTGDIGLWL-P---------GGRLKIID-RKKNIFKLAQGEYIAPEKIENV 569

Query:   430 XXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLM---AAKRLSIVHAD--ASELSKEKTIS 484
               +   + Q  + G         IV    EV+    A++ +   H     ++    KT+ 
Sbjct:   570 YTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEHLGQLCNDPRVRKTVL 629

Query:   485 LLYGELRKWTSKCSFQIGP-IHVVDEPFTV 513
                 +L +      F+    + +V EPFT+
Sbjct:   630 AEMDDLGREAQLRGFEFAKAVTLVPEPFTL 659

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

UNIPROTKB|B7Z3Z9 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
 Identities = 75/232 (32%), Positives = 113/232 (48%)

Query:   256 LAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAAR 313
             L ++L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +      
Sbjct:   240 LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLT 299

Query:   314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 373
              P     G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +AL
Sbjct:   300 MPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEAL 359

Query:   374 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 432
             D+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        R
Sbjct:   360 DKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMR 408

Query:   433 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 483
             S  + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct:   409 SEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 459

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0034201 "response to oleic acid" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK39	AAE16_ARATH	6, ., 2, ., 1, ., -	0.6939	0.9807	0.7063	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-125
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-121
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	9e-77
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	5e-52
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-50
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-40
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	7e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-39
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-36
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-35
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	6e-35
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-34
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	9e-34
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-33
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	8e-33
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-32
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-31
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	4e-31
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	4e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-31
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-30
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-30
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	9e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-29
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-29
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-28
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-27
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	6e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-26
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	4e-26
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	9e-26
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-24
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	9e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	9e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-22
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	7e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	9e-22
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-21
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-20
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-20
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	5e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	7e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-19
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-17
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	9e-17
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-16
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-16
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-15
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-15
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-15
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-15
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-15
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-15
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	5e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	7e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	9e-15
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-14
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-13
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-13
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-13
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-13
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-12
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	3e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-12
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-12
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	7e-12
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-12
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-11
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-11
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-11
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	5e-11
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-11
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-10
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-10
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-10
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	8e-10
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	9e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	9e-10
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-09
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-09
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-09
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-08
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-08
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-08
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-08
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	5e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-07
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-07
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	5e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-07
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	6e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	8e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-06
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-06
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-06
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-06
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-06
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	5e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	6e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	6e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-05
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-05
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-05
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-05
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-05
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	6e-05
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	7e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-04
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-04
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-04
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-04
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	9e-04
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.001
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	0.001
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	0.001
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	0.003
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.003
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.003
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	0.003
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	0.004

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  379 bits (975), Expect = e-125
 Identities = 160/518 (30%), Positives = 249/518 (48%), Gaps = 66/518 (12%)

Query: 3   VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRES 62
             + VEN E  + +   L     +  +I        +  + VE   +   +   D G   
Sbjct: 119 KVIFVENQELLDLVLPVLEDCPKVVDLI----VIIDLVREAVEAKAL-VLEVFPDEGISL 173

Query: 63  RKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA 122
               S   + R          DD+AT +YTSGTTG PKGVMLTH+NLL Q+  + +++P 
Sbjct: 174 FLIDSAGLEGRIAPP----KPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP 229

Query: 123 -ENGDKFLSMLPPWHVYERACGYFIF--SRGIELMYTAVRNLKDDLQRYQPHYMISVPLV 179
              GD+ LS LP  H++ERA    +        L     R L +DL+  +P  MI VP V
Sbjct: 230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRV 289

Query: 180 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 239
           +E +Y GI +++  + A RR + R  +++++   +                         
Sbjct: 290 WEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS------------------------- 324

Query: 240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQ 298
                ++        L+A++LV++KI+ A+G   +  +SGG  L   +  F+ ++G+ + 
Sbjct: 325 ---RALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPIL 381

Query: 299 VGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 358
            GYGLTE+S V++   P   VLG+VG P+   E+KI D            G + VRG  V
Sbjct: 382 EGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNV 430

Query: 359 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 418
           M+GY+KNP AT +A  EDGW  TGD+G +             G LV+ GR K+ I LS G
Sbjct: 431 MKGYYKNPEATAEAFTEDGWFRTGDLGELDE----------DGYLVITGRKKELIKLSNG 480

Query: 419 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIV-HADASEL 477
           +N+ P  +E    +S LI QI V+G D++   A+IVPD + +   A+ L+ V  A   EL
Sbjct: 481 KNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASREEL 540

Query: 478 SK-EKTISLLYGELRK-WTSKCSF-QIGPIHVVDEPFT 512
           ++  K + L+   + K       F QI    ++ + FT
Sbjct: 541 ARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFT 578

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  362 bits (932), Expect = e-121
 Identities = 141/439 (32%), Positives = 207/439 (47%), Gaps = 91/439 (20%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 141
             DD+AT +YTSGTTGNPKGVMLTH+NLL Q  +L +++P   GD+ LS LP  HV+E+ 
Sbjct: 86  KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145

Query: 142 CG-YFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 199
            G Y   S G  + +      L +DL+  +P    +VP V+E +Y+GI+ +         
Sbjct: 146 LGEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK--------- 196

Query: 200 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 259
            VA A           KR                   L  W       A+          
Sbjct: 197 -VAAA--------GPLKR------------------KLFRW-------ALG--------- 213

Query: 260 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 319
                     G  +  VSGG  LP  +  F+ A+G+ +  GYGLTE+S V    RP    
Sbjct: 214 ---------GGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIR 264

Query: 320 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 379
           +G+VG P+   E++I +            G + VRG  VM+GY+KNP AT +ALDEDGWL
Sbjct: 265 IGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEALDEDGWL 313

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 439
           +TGDIG +             G LV+  R KD IV + G+N+ P  +E A   S  I Q 
Sbjct: 314 HTGDIGRLD----------EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363

Query: 440 VVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-----LRKWT 494
           VV+G D+    A+IV D E +   A++  +     ++L+++  +  L  +       +  
Sbjct: 364 VVVGDDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLA 423

Query: 495 SKCSFQIGPIHVVDEPFTV 513
                QI    ++ + F++
Sbjct: 424 R--VEQIKKFVLLPKEFSI 440

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  250 bits (642), Expect = 9e-77
 Identities = 147/489 (30%), Positives = 217/489 (44%), Gaps = 77/489 (15%)

Query: 43  IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGV 102
             + + V+S++E+ +LG++++   +                +D+AT +YTSGTTGNPKGV
Sbjct: 82  FCDAVKVYSFEELEELGKKNKVPPTPPK------------PEDLATIMYTSGTTGNPKGV 129

Query: 103 MLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--V 158
           MLTH N++  +  +  IVP   G  D ++S LP  H++ER         G  + Y +   
Sbjct: 130 MLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT 189

Query: 159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 218
           R LK D++  +P   + VP V + +Y GI  ++      +R +       +FAY  +K  
Sbjct: 190 RGLKGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTL------FNFAY-NYKL- 241

Query: 219 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--- 275
                L R     S                       L +KLV+KKI++A+G    G   
Sbjct: 242 ---AALRRGHGYAS----------------------PLWDKLVFKKIKAALG----GRVR 272

Query: 276 --VSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 332
             +SGG  L      F     G  V  GYGLTE+        P     G VG P+   EI
Sbjct: 273 LMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPCCEI 332

Query: 333 KIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           K+VD             +G + +RG  V +GY+KNP  T +A DEDGW +TGDIG   P 
Sbjct: 333 KLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP- 391

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRP 449
                     G L +  R K+   LS GE V   +LE     S L+ QI V G   +   
Sbjct: 392 ---------DGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442

Query: 450 GAIIVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLYGELRKWTSKC---SF-QIGPI 504
            AI+VPD++ +   A        D  EL + +K    +  +L +   +     F  +  I
Sbjct: 443 VAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAI 502

Query: 505 HVVDEPFTV 513
           H+  EPFT 
Sbjct: 503 HLTPEPFTP 511

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  184 bits (468), Expect = 5e-52
 Identities = 119/446 (26%), Positives = 183/446 (41%), Gaps = 104/446 (23%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA-- 141
           +D+AT VYTSGTTG PKGVML+        +   +I+     D+ LS LP  H+ ER   
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIV 196

Query: 142 ------CGYFI-FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTS 194
                  G  + F   ++   T       DLQR +P    SVP     L++  Q+ I   
Sbjct: 197 EGGSLYSGAEVFFVESLD---TFAA----DLQRARPTVFFSVP----RLWTKFQQGILAK 245

Query: 195 SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLH 254
               +                        L    K P                       
Sbjct: 246 LPPEK------------------------LNLLLKIP----------------------- 258

Query: 255 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAA 312
            +   LV KKI   +G+ +A ++G G+ PM   L  +Y  +G+ +  GYG+TE+      
Sbjct: 259 -ILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL 317

Query: 313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 372
             P    +G+VG PI   E+KI  +E  E+L         +R   +M GY+K+P  T +A
Sbjct: 318 NYPGDRRIGTVGKPIPGVELKI--SEDGEIL---------IRSPGLMSGYYKDPEKTAEA 366

Query: 373 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 432
             EDGWL+TGD G I             G L + GR K+    S G+ V P  +E     
Sbjct: 367 FTEDGWLHTGDKGEIDED----------GFLKITGRVKELFKTSKGKYVAPAPIENLLSA 416

Query: 433 SSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK 492
           +  + Q+ V+G    +P A++V  +    +  + +        E S ++T++ +  EL  
Sbjct: 417 NPHVEQVCVVGSGLPQPVALVVLSEAADPLEREEV--------EESLQQTLAKVNSELES 468

Query: 493 WTSKCSFQIGPIHVVDEPFTVNFLCL 518
                  ++  + VV E +TV    L
Sbjct: 469 HE-----RLSALVVVKEAWTVENGLL 489

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  182 bits (465), Expect = 1e-50
 Identities = 144/494 (29%), Positives = 213/494 (43%), Gaps = 101/494 (20%)

Query: 49  VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN 108
           + +Y +++  GR S + F                 +D+AT  YTSGTTG PKGV+LTH N
Sbjct: 198 IVTYSKLLAQGRSSPQPFRPPK------------PEDVATICYTSGTTGTPKGVVLTHGN 245

Query: 109 LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DDLQ 166
           L+  +            D  +S LP  H+YER     +   G+ + +    NLK  DDL 
Sbjct: 246 LIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLA 305

Query: 167 RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR 226
             +P    SVP +Y  +Y GI   +  S      +   L     AY A K+  E      
Sbjct: 306 ALRPTIFCSVPRLYNRIYDGITNAVKESG----GLKERLFNA--AYNAKKQALE------ 353

Query: 227 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI 286
           N K PS                 +W      ++LV+ KI++ +G  +      G+ P+  
Sbjct: 354 NGKNPS----------------PMW------DRLVFNKIKAKLG-GRVRFMSSGASPLSP 390

Query: 287 DL--FYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE----T 339
           D+  F     G +V  GYG+TE+S VI+      N+ G VG P    E+K+VD      T
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYT 450

Query: 340 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 399
           +E  P   +G + VRG  + +GY+K+   T++ +DEDGWL+TGDIG   P          
Sbjct: 451 SEDQPY-PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP---------- 499

Query: 400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDK 457
           GG L +  R K+   L+ GE + P ++E    +   + Q  V G D       A++V D 
Sbjct: 500 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG-DSLNSSLVAVVVVD- 557

Query: 458 EEVLM--AAKR----------------LSIVHADASELSKEKTISLLYGELRKWTSKCSF 499
            EVL   AA                   + V AD   + +E        +LR +      
Sbjct: 558 PEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGRE-------AQLRGFE----- 605

Query: 500 QIGPIHVVDEPFTV 513
               + +V EPFTV
Sbjct: 606 FAKAVTLVPEPFTV 619

Length = 651

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  153 bits (389), Expect = 3e-40
 Identities = 126/450 (28%), Positives = 201/450 (44%), Gaps = 82/450 (18%)

Query: 30  ILLWGKKSSVAPDIVEEIPV--FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIA 87
           I+ +G  SS   +  EE+ V  FS++E   +G        D     K          DI 
Sbjct: 177 IVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL------DCELPPKQ-------KTDIC 223

Query: 88  TYVYTSGTTGNPKGVMLTHKNLLHQIRS------LYDIVPAENGDKFLSMLPPWHVYERA 141
           T +YTSGTTG PKGV+LT++ ++ ++ S      + D V  E  D + S LP  HVY++ 
Sbjct: 224 TIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE-DSYFSYLPLAHVYDQV 282

Query: 142 CGYFIFSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 199
              +  S+G  + +    +R L +D+Q  +P     VP VY+ +Y+GI ++I +    R+
Sbjct: 283 IETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRK 342

Query: 200 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 259
            +        FAY  +K       L + +  P                          ++
Sbjct: 343 KL------FDFAYN-YKLGNLRKGLKQEEASP------------------------RLDR 371

Query: 260 LVYKKIQSAI-GISKAGVSGGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPT 316
           LV+ KI+  + G  +  +SG   LP H++ F       V   GYGLTES      +    
Sbjct: 372 LVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANV 431

Query: 317 CNVLGSVGHPINHTEIKIV-------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT 369
            +++G+VG P+   E ++        DA ++  +P   +G + +RG+ +  GY K    T
Sbjct: 432 FSMVGTVGVPMTTIEARLESVPEMGYDALSD--VP---RGEICLRGNTLFSGYHKRQDLT 486

Query: 370 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 429
           ++ L  DGW +TGDIG   P+          G + +  R K+   LS GE V    LE  
Sbjct: 487 EEVL-IDGWFHTGDIGEWQPN----------GAMKIIDRKKNIFKLSQGEYVAVENLENT 535

Query: 430 ALRSSLIRQIVVIGQD-QRRPGAIIVPDKE 458
             R  LI  I V G   +    A++VPD++
Sbjct: 536 YSRCPLIASIWVYGNSFESFLVAVVVPDRQ 565

Length = 660

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  153 bits (387), Expect = 7e-40
 Identities = 126/434 (29%), Positives = 208/434 (47%), Gaps = 71/434 (16%)

Query: 47  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 106
           +  +S+ + + +G+E+    S++N  +           DI T +YTSGT+G+PKGV+LTH
Sbjct: 195 VKTYSWIDFLHMGKENP---SETNPPK---------PLDICTIMYTSGTSGDPKGVVLTH 242

Query: 107 KNLLHQIRSLYDIVPAENGDK------FLSMLPPWHVYERACGYFIFSRGIELMYTA--V 158
           + +   +R + D+   +  DK      +LS LP  H+ +R    + F +G  + Y    +
Sbjct: 243 EAVATFVRGV-DLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301

Query: 159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 218
             L+DDL   +P  +  VP V+E ++ GIQK +   +  RR++  AL +   A+    R 
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW--MNRG 359

Query: 219 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVS 277
           Y       + K+ S                   P   +A+ L ++K+++ +G   +  +S
Sbjct: 360 Y-------SHKKAS-------------------P---MADFLAFRKVKAKLGGRLRLLIS 390

Query: 278 GGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIV 335
           GG  L   I+ F         V GYGLTE+  P          +LG+VG P  + E+++ 
Sbjct: 391 GGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLE 450

Query: 336 DAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393
           +       P G   +G + VRG  +  GY+KNP  T++ + +DGW +TGDIG I P+   
Sbjct: 451 EVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPN--- 506

Query: 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--A 451
                  GVL +  R K+ I LS GE V    LE    ++ ++  I V G D  +    A
Sbjct: 507 -------GVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG-DSFKSMLVA 558

Query: 452 IIVPDKEEVLMAAK 465
           ++VP++E     AK
Sbjct: 559 VVVPNEENTNKWAK 572

Length = 660

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  146 bits (371), Expect = 1e-39
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 51/256 (19%)

Query: 273 KAGVSGGGSLPM-HIDLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV---LGSVGHPI 327
           + G+SGG  +P   +    E   +  +  GYG+TE+S V              G+VG P+
Sbjct: 120 RTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 328 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
              E+KIVD +  EV P G  G + VRG  VM+GY+ +P AT +A+D DGWL+TGD+G++
Sbjct: 180 PGVEVKIVDPDGGEV-PPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 447
                        G L + GR KD I +  GEN+ P E+EEA L    + +  V+G    
Sbjct: 239 DED----------GYLRIVGRIKDMI-IRGGENIYPAEIEEALLTHPAVAEAAVVG---- 283

Query: 448 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 503
                 VPD+   EV+ A   L       + L++E        EL  +   C  ++    
Sbjct: 284 ------VPDERLGEVVAAFVVL----KPGATLTEE--------ELIAF---CRGRLARFK 322

Query: 504 ----IHVVDE-PFTVN 514
               +  VDE P T +
Sbjct: 323 VPRYVRFVDELPRTAS 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  141 bits (358), Expect = 2e-36
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 273 KAGVSGGGSLPMHIDLFYEAIGVKVQV--GYGLTESSPVIAA--RRPTCNVLGSVGHPIN 328
           +  +SGG  LP  +   +E     + +  GYGLTE+SPV+            GSVG P+ 
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353

Query: 329 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
             E++IVD +  EVLP G  G + VRG  VM+GY+  P AT +A DEDGWL TGD+G++ 
Sbjct: 354 GVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--- 445
                       G L + GR KD I+   GEN+ P E+E        + +  V+G     
Sbjct: 413 ED----------GYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDER 461

Query: 446 -QRRPGAIIVPDKEEVLMAAKR 466
              R  A++V            
Sbjct: 462 WGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  139 bits (351), Expect = 3e-35
 Identities = 100/420 (23%), Positives = 179/420 (42%), Gaps = 76/420 (18%)

Query: 46  EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT 105
           E  ++S+ E ++LGR          D +     E+   +   T +YTSGTTG PKGVML+
Sbjct: 119 EPNLYSWKEFMELGR-------SIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLS 171

Query: 106 HKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHVYER-----------ACGYFIFSRGI 151
           H N+    ++     D+      +  +S LP  H+  +            C YF  ++  
Sbjct: 172 HDNITWTAKAAVKHMDLRT-VGQESVVSYLPLSHIAAQILDIWLPISVGGCVYF--AQPD 228

Query: 152 ELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF- 210
            L  T V+ L++     +P   + VP V+E +   ++     S+  +R +A     +   
Sbjct: 229 ALKGTLVKTLRE----VRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLE 284

Query: 211 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG 270
                        +      P                        LA+KLV+KK++ A+G
Sbjct: 285 TNLK--------LMGGESPPPMC--------------------FRLAKKLVFKKVRKALG 316

Query: 271 ISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPIN 328
           + +      G+ P+  +   F+ ++ + +   YG++E+S       P    L S G  + 
Sbjct: 317 LDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALP 376

Query: 329 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
             E KI + + + +      G + + G  V  GY      T++A+DEDGWL++GD+G++ 
Sbjct: 377 GCETKIHNPDADGI------GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLD 430

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-LRSSLIRQIVVIGQDQR 447
                       G L + GR K+ I+ + GENV P+ +EEA      +I   +++G  ++
Sbjct: 431 DD----------GFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  136 bits (345), Expect = 6e-35
 Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 49/227 (21%)

Query: 276 VSGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGHPIN 328
           +SGG  LP+   + F E  G  +  GYGLTE+SPV         R+P     GS+G P+ 
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKP-----GSIGLPLP 302

Query: 329 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
            TE+KIVD E NE+ P G  G + VRG QVM+GY+  P  T + L  DGWL TGDIG++ 
Sbjct: 303 GTEVKIVDDEGNEL-PPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMD 360

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                       G   +  R KD I +  G NV P E+EE       + +  V+G     
Sbjct: 361 ED----------GYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVG----- 404

Query: 449 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 493
                VPD    E + A     +V  + + L++E        EL  +
Sbjct: 405 -----VPDPYRGEAVKAF----VVLKEGASLTEE--------ELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  132 bits (334), Expect = 6e-34
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 276 VSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPINHTE 331
           +SGG  LP   +    E  G V +  GYG TE++ V  A  P       GS+G P+   E
Sbjct: 253 LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVE 312

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN--TGDIGWIAP 389
           +K++D E   V P G  G + +RG  V +GY  +P  T +   EDGW    TGD+G    
Sbjct: 313 VKVLDEEGEPV-PPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDE 371

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 441
                      G L + GR  D + +  GE +EP E+E   L    + +  V
Sbjct: 372 D----------GYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  135 bits (341), Expect = 9e-34
 Identities = 132/485 (27%), Positives = 208/485 (42%), Gaps = 80/485 (16%)

Query: 34  GKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTS 93
           G  S  +        V S+ E+  LG+E+     D +             +DIA  +YTS
Sbjct: 212 GVDSDSSLSGSSNWTVSSFSEVEKLGKENP---VDPDLPSP---------NDIAVIMYTS 259

Query: 94  GTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIE 152
           G+TG PKGVM+TH N++  +  +  +VP     D +L+ LP  H+ E A    + + G  
Sbjct: 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAA 319

Query: 153 LMYTAVRNLKD-----------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 201
           + Y +   L D           D    +P  M +VP + + +  G++K++     A+  +
Sbjct: 320 IGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV----DAKGGL 375

Query: 202 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID--WLWARIICAILWPLHLLAEK 259
           A+ L  I     A+KR                 +A I+  W  A  +  +LW      + 
Sbjct: 376 AKKLFDI-----AYKR----------------RLAAIEGSWFGAWGLEKLLW------DA 408

Query: 260 LVYKKIQSAIGISKAGV-SGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTC 317
           LV+KKI++ +G     + SGG  L      F    +G  +  GYGLTE+           
Sbjct: 409 LVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDD 468

Query: 318 NVLGSVGHPINHTEIKIVDAETNEVLPAGS---KGIVKVRGSQVMQGYFKNPSATKQA-- 372
             +G VG P+    +K+V  E    L +     +G + + G  V  GYFKN   T +   
Sbjct: 469 TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK 528

Query: 373 LDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 430
           +DE G  W  TGDIG   P           G L +  R KD + L  GE V  L   EAA
Sbjct: 529 VDERGMRWFYTGDIGQFHPD----------GCLEIIDRKKDIVKLQHGEYVS-LGKVEAA 577

Query: 431 LRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLY 487
           L  S     +++  D       A++VP ++ +   AK+  I +++ +EL  KE+ +  + 
Sbjct: 578 LSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQ 637

Query: 488 GELRK 492
             L K
Sbjct: 638 QSLSK 642

Length = 696

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  129 bits (326), Expect = 2e-33
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHT 330
           +  +SGG  L    ++ F E  G  +  GYGLTE+S V +    +     G+VG P+   
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           E+++VD E    LP G  G + VRG  VM+GY+ NP  T  A  EDGW  TGD+G++   
Sbjct: 179 EVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEE 237

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                     G L + GR+KD I    GENV P E+E   L+   + +  V+G       
Sbjct: 238 ----------GYLYITGRSKDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG------- 279

Query: 451 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD 508
            +   D+ E ++A     +V    ++   E        EL+        ++ P  V  
Sbjct: 280 -VPDEDRGERIVAF----VVLRPGADALAE--------ELKAH---LRERLAPYKVPR 321

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  127 bits (322), Expect = 8e-33
 Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 53/250 (21%)

Query: 273 KAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPI 327
           +  + G    PM  +L     E  G     GYG+TE+ P      P   +  LGSVG P+
Sbjct: 118 RLIIYGAA--PMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 328 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
              E++IVD +  E+ P G  G + VRG  VM GY+  P AT +AL  DGWL+TGD+G++
Sbjct: 176 PGVEVRIVDEDGREL-PPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYL 233

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 447
                        G L +  R KD I+ S GEN+ P E+E   L    +  + VIG    
Sbjct: 234 DED----------GYLYIVDRKKDMII-SGGENIYPAEVENVLLAHPAVADVAVIG---- 278

Query: 448 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 503
                 VPD+E  E ++A     +V    + L  E        EL  +   C  ++    
Sbjct: 279 ------VPDEEWGEAVVAV----VVLRPGATLDAE--------ELIAF---CRERLAGYK 317

Query: 504 ----IHVVDE 509
               +  VDE
Sbjct: 318 VPKSVEFVDE 327

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  131 bits (332), Expect = 1e-32
 Identities = 114/408 (27%), Positives = 171/408 (41%), Gaps = 65/408 (15%)

Query: 66  FSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--IVPA 122
           F D + +   +YK +    D I + VYTSGT+G PKGVML++KNL + +  L    I   
Sbjct: 285 FDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 123 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVY 180
            N    LS LP  H+YER   Y  F  G  +   +  +     D+   + + +  VP V+
Sbjct: 345 YNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVF 404

Query: 181 ETLYSGIQKQIFTSSAARRVVARALI--RISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 238
             +Y+ I  +I      +R + + ++  R S     F +  EG  +T             
Sbjct: 405 NRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEG--ITH------------ 450

Query: 239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL-PMHIDLFYEAIGVK 296
                                 +  KI+  +  + +  ++GGG L P   +     + V 
Sbjct: 451 ----------------------ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVN 488

Query: 297 VQVGYGLTESS-PVIAARRPTCNVLGSVGHPIN-HTEIKIVDAET---NEVLPAGSKGIV 351
              GYGLTE++ P+        N   S+G PI+ +T+ K+   ET    + LP   KG +
Sbjct: 489 YYQGYGLTETTGPIFVQHADDNNTE-SIGGPISPNTKYKVRTWETYKATDTLP---KGEL 544

Query: 352 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 411
            ++   +  GYF     TK A  EDG+  TGDI  I  +          G L    R+K 
Sbjct: 545 LIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKN----------GSLTFLDRSKG 594

Query: 412 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPDKE 458
            + LS GE +E   L     + S I   VV G D    P AII  DK 
Sbjct: 595 LVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKY 642

Length = 746

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  126 bits (319), Expect = 3e-31
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 27/222 (12%)

Query: 255 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAAR 313
           LL     Y    S++   +  + GG +LP   +  F E  G+ +  GYG+TE+SPV++  
Sbjct: 269 LLKAPRAYFVDFSSL---RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325

Query: 314 RPTCNVLG------SVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNP 366
            P   + G      S G P+   E +IVD + +E+ P  G  G + VRG  +MQGY+  P
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 367 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 426
            AT + +D  GWL+TGD+G+I             G L +  R KD I+ S GEN+ P EL
Sbjct: 386 EATAETID-GGWLHTGDVGYIDED----------GYLYITDRIKDVII-SGGENIYPREL 433

Query: 427 EEAALRSSLIRQIVVIGQ-DQR---RPGAIIVPDKEEVLMAA 464
           E+A      + ++ VIG  D++   RP A++V      L A 
Sbjct: 434 EDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK 475

Length = 521

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  127 bits (320), Expect = 4e-31
 Identities = 126/495 (25%), Positives = 212/495 (42%), Gaps = 76/495 (15%)

Query: 39  VAPDIVEE-----IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTS 93
           V+ +  EE     + ++++DE + LG              K Y        DI T +YTS
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEG------------KQYDLPIKKKSDICTIMYTS 232

Query: 94  GTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-----DKFLSMLPPWHVYERACGYFIFS 148
           GTTG+PKGVM+++++++  I  +  ++ + N      D +LS LP  H+++R        
Sbjct: 233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQ 292

Query: 149 RG--IELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 206
            G  I      V+ L +DL   +P    +VP V + +YSG+QK++      ++ V  +  
Sbjct: 293 HGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAF 352

Query: 207 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 266
              F                 +K  S++ A                   L +KLV+ K++
Sbjct: 353 SYKFGNM--------------KKGQSHVEA-----------------SPLCDKLVFNKVK 381

Query: 267 SAIGIS-KAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRP-TCNVLGSV 323
             +G + +  +SG   L  H++ F   +    V  GYGLTES        P   ++LG+V
Sbjct: 382 QGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTV 441

Query: 324 GHPINHTEIKI--VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
           G P+ + +I++  V     + L +  +G + +RG  +  GY+K    TK+ L  DGWL+T
Sbjct: 442 GPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHT 500

Query: 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 441
           GD+G   P+          G + +  R K+   LS GE V    +E        +  + V
Sbjct: 501 GDVGEWQPN----------GSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWV 550

Query: 442 IGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK-EKTISLLYGELRKWTSKCSFQ 500
            G         I    +++L      + V  D + L + EK    + GEL K   +   +
Sbjct: 551 YGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMK 610

Query: 501 ----IGPIHVVDEPF 511
               I  IH+   PF
Sbjct: 611 GFEIIKAIHLDPVPF 625

Length = 666

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  126 bits (319), Expect = 4e-31
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 48/229 (20%)

Query: 297 VQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 353
           V + YG+TE+SPV    R    +   + +VG  + H E+KIVD ET E +P G +G +  
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 354 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 413
           RG  VM+GY+ +P  T +A+D DGW++TGD+  +             G + + GR KD I
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE----------GYVNIVGRIKDMI 453

Query: 414 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 471
           +   GEN+ P E+EE       I+ + V+G          VPD++  E + A   L    
Sbjct: 454 I-RGGENIYPREIEEFLYTHPKIQDVQVVG----------VPDEKYGEEVCAWIIL---R 499

Query: 472 ADASELSKEKTISLLYGELRKWTSKCSFQIG----P--IHVVDE-PFTV 513
             A  L++E        ++R +   C  +I     P  I  VDE P TV
Sbjct: 500 PGA-TLTEE--------DVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  124 bits (313), Expect = 4e-31
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 27/173 (15%)

Query: 294 GVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 351
           G+ +   YG+TE++  +A  +P      LGSVG P+   E++IV+ +  E+L        
Sbjct: 213 GIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEIL-------- 264

Query: 352 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 411
            VRG  +  GY      T   LDEDGW +TGD+G++    + G        L + GR  D
Sbjct: 265 -VRGPSLFLGYLPQGGLT-PPLDEDGWFHTGDLGYL---DAEGY-------LYVLGRRDD 312

Query: 412 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 460
            I+ S GEN+ P E+E   L+   + +  V+G        RP A +VP+ + V
Sbjct: 313 LII-SGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  125 bits (317), Expect = 1e-30
 Identities = 103/386 (26%), Positives = 169/386 (43%), Gaps = 89/386 (23%)

Query: 45  EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGS-DDIATYVYTSGTTGNPKGVM 103
           E   + ++ +++  G            A  H+      + DD+A  +YTSGTTG+PKGVM
Sbjct: 234 EGCRLVAWTDVVAKGHS----------AGSHHPLNIPENNDDLALIMYTSGTTGDPKGVM 283

Query: 104 LTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV 158
            TH +L   I +L D     I P E  + + S LP  H+ E        +RG  + + + 
Sbjct: 284 HTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSP 343

Query: 159 RNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA 211
           R L D       DL  ++P ++I VP +++T+   ++ ++    + +R V          
Sbjct: 344 RTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRV---------- 393

Query: 212 YTAFKRIYEGFCLTRNQKQPSYLVALID------WLWARIICAILWPLHLLAEKLVYKKI 265
              F   Y+           S L AL +      W                  + V+   
Sbjct: 394 ---FDHAYQ-----------SRLRALKEGKDTPYW-----------------NEKVFSAP 422

Query: 266 QSAIGIS-KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRP---TCNVL 320
           ++ +G   +A +SGGG L      F   + G+ +Q G+GLTE+      +R      N  
Sbjct: 423 RAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQ-GWGLTETVCCGGIQRTGDLEPN-- 479

Query: 321 GSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED 376
            +VG  +   E+K++D E    T+   P   +G + +RG  + +GY+K    T++ LDED
Sbjct: 480 -AVGQLLKGVEMKLLDTEEYKHTDTPEP---RGEILLRGPFLFKGYYKQEELTREVLDED 535

Query: 377 GWLNTGDIGWIAPHHSRGRSRRCGGV 402
           GW +TGD+G IA +   G  R  G V
Sbjct: 536 GWFHTGDVGSIAAN---GTLRIIGRV 558

Length = 700

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (310), Expect = 4e-30
 Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 276 VSGGGSLPM-HIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTE 331
            SG   L     + F     GV++  GYG+TESSPV             GSVG  + + E
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
            KIVD ET E LP    G + VRG QVM+GY  NP AT + +D+DGWL+TGD+G+     
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDE-- 398

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 451
                    G L +  R K+ I    G  V P ELE   L    I    VI         
Sbjct: 399 --------DGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIP-------- 441

Query: 452 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTIS 484
              PD+E  E+ MA     +V    SELS+++ + 
Sbjct: 442 --YPDEEAGEIPMAF----VVRQPGSELSEDEVMQ 470

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  121 bits (307), Expect = 9e-30
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIA---ARRPTCNVLGSVGHPI 327
           +  V+G  S+P+  ++ F   +GV  V  GYGL+E+S V            V G++G  I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343

Query: 328 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
              E KIV+    EV P G  G + VRG  VM+GY+ +P AT  A+D DGWL+TGD+G +
Sbjct: 344 AGVENKIVNELGEEV-PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRL 402

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 447
                 G        L +  R KD   +  G NV P E+EE       + +  VIG    
Sbjct: 403 DE---EGY-------LYIVDRKKDMF-IVGGFNVYPAEVEEVLYEHPAVAEAAVIG---- 447

Query: 448 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 484
                 VPD  E L    +  +V    +EL++E+ I+
Sbjct: 448 ------VPD--ERLGEVGKAYVVLKPGAELTEEELIA 476

Length = 513

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  118 bits (299), Expect = 4e-29
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 301 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
           YG+TE     S+P+   RRP     G+VG P+   E++IVD +  E L AG  G ++VRG
Sbjct: 238 YGMTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG 292

Query: 356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 415
             V   Y+  P AT +A  EDGW  TGD+G               G   + GR  D I+ 
Sbjct: 293 PNVFSEYWNKPEATAEAFTEDGWFKTGDVGV----------VDEDGYYRILGRKSDDIIK 342

Query: 416 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 464
           S G  V  LE+EEA L    + ++ VIG           A++VP+    L  A
Sbjct: 343 SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  119 bits (301), Expect = 6e-29
 Identities = 100/386 (25%), Positives = 146/386 (37%), Gaps = 89/386 (23%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE 139
           T   D++A  ++TSGT G PKGVMLTH N+L   R+    +     D F+   P  H   
Sbjct: 183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH--- 239

Query: 140 RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 199
            A G+                          H + +  L+       +   IFT  A   
Sbjct: 240 -ATGFL-------------------------HGVTAPFLIGARS---VLLDIFTPDACLA 270

Query: 200 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 259
           ++ +         T F  IY+   L   +KQP+ L AL  +L                  
Sbjct: 271 LLEQQRCTCMLGATPF--IYDLLNLL--EKQPADLSALRFFL------------------ 308

Query: 260 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP--VIAARRPTC 317
                             GG ++P  +    +  G+K+   YG TESSP  V+    P  
Sbjct: 309 -----------------CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLS 351

Query: 318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 377
             + + G+     EIK+VD     + P G +G    RG  V  GY   P  T +ALDE+G
Sbjct: 352 RFMHTDGYAAAGVEIKVVDEARKTL-PPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410

Query: 378 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 437
           W  +GD+  +      G  +       + GR KD IV   GEN+   E+E+  L+   I 
Sbjct: 411 WYYSGDLCRM---DEAGYIK-------ITGRKKDIIV-RGGENISSREVEDILLQHPKIH 459

Query: 438 QIVVIGQDQRRPG----AIIVPDKEE 459
              V+     R G    A +V     
Sbjct: 460 DACVVAMPDERLGERSCAYVVLKAPH 485

Length = 547

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  116 bits (292), Expect = 1e-28
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 21/189 (11%)

Query: 277 SGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAAR--RPTCNVLGSVGHPINHTEIK 333
           S    LP   +D   +  GV V   YG+TE++  IA+    P     GSVG P    E+ 
Sbjct: 125 SASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVA 183

Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393
           I+D +    LP G +G + +RG  V  GY  NP A ++A   DGW  TGD+G++      
Sbjct: 184 ILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDED--- 238

Query: 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RP 449
                  G L L GR K+ I    GE + P E+EE  LR   + + VV G  D+      
Sbjct: 239 -------GYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290

Query: 450 GAIIVPDKE 458
            A +V   +
Sbjct: 291 AAAVVLRAD 299

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  117 bits (295), Expect = 3e-28
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 29/208 (13%)

Query: 287 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 346
           +LF E  G+++  GYG TE SPVI+   P  N  G+VG P+   E++IV  ET+E LP G
Sbjct: 277 ELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 347 SKGIVKVRGSQVMQGYFKNPSATK-QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 405
             G++ VRG  VM GY  N   T    +  DGW +TGDIG I             G L +
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED----------GFLTI 386

Query: 406 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIV-------P 455
            GR K    +  GE V  L   E  L   L        V   D+++ G  IV        
Sbjct: 387 VGRLKRFAKIG-GEMV-SLTAVEELLSEILPEDSLHAAVEVPDEKK-GEKIVLLTTTEDL 443

Query: 456 DKEEVLMAAKRLSIVHADASELSKEKTI 483
           D EE+    +      A    L+  + I
Sbjct: 444 DPEELNAILR-----EAGLPNLAVPRKI 466

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  116 bits (292), Expect = 1e-27
 Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 49/229 (21%)

Query: 297 VQVGYGLTESSPVI---AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 353
           VQ+ YG+TE+SPV     A       + +VG    H E+K+VD +    +P G  G +  
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCT 404

Query: 354 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 413
           RG  VM+GY+ NP AT +++DEDGW++TGD+  +             G + + GR+KD I
Sbjct: 405 RGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQ----------GYVRIVGRSKDMI 454

Query: 414 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 471
           +   GEN+ P E+EE       +  + V G          VPD++  E ++A  RL   H
Sbjct: 455 I-RGGENIYPREIEEFLFTHPAVADVQVFG----------VPDEKYGEEIVAWVRLHPGH 503

Query: 472 ADASELSKEKTISLLYGELRKWTSKCSFQIG----PIHV--VDE-PFTV 513
           A + E            ELR++   C  +I     P +   VDE P TV
Sbjct: 504 AASEE------------ELREF---CKARIAHFKVPRYFRFVDEFPMTV 537

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (286), Expect = 2e-27
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPINHTEIKI 334
           V G          F E  GVK+  GYG+TE+  P+IA   P     GS G P    E++I
Sbjct: 201 VFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI 258

Query: 335 VDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
           VD +  EV P G  G + VR  +   + +GY+  P AT +A   +GW +TGD G      
Sbjct: 259 VDEDGREV-PPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED- 315

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
                    G L    R KD I    GEN+   E+E A L    + +  V+ 
Sbjct: 316 ---------GFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  113 bits (285), Expect = 6e-27
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 277 SGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           SG   L   + +   +      ++ GYG+TE+ P      P     GSVG  + + E KI
Sbjct: 270 SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKI 329

Query: 335 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394
           VD +  + L    +G + V+G Q+M+GY  NP ATK+ +DEDGWL+TGDIG+        
Sbjct: 330 VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDE----- 384

Query: 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPG 450
                 G   +  R K+ I    G  V P ELE   L    +    VIG         P 
Sbjct: 385 -----DGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPR 438

Query: 451 AIIVPDKEEVLMAA 464
           A +V      L   
Sbjct: 439 AYVVLKPGSKLTEQ 452

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 1e-26
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 273 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 331
           K  +SGG +L +     ++ + G  +  GYG+TE+SPV++        +G++G P+  T 
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
            K++D + NE LP G  G + V+G QVM+GY++ P AT + LD DGWL TGDI  I    
Sbjct: 389 CKVIDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED- 446

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE--AALRSSLIRQIVVIGQDQRRP 449
                    G + +  R KD I++S G NV P ELE+  AAL   L  Q   IG    + 
Sbjct: 447 ---------GYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL--QCAAIGVPDEKS 494

Query: 450 GAII 453
           G  I
Sbjct: 495 GEAI 498

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (280), Expect = 4e-26
 Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 46/236 (19%)

Query: 261 VYKKIQSAI---GISKAGV----SGGGSLPMHIDLFYEAI--GVKVQVGYGLTESSPVIA 311
           +Y+KI  A    G+  +GV    SG  +LP+     +E +  G+ V+ GYGLTE+SP+I 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVE-GYGLTETSPIIV 378

Query: 312 A------RRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFK 364
                  RRP     G VG P   TE++IVD E  +E +P G +G + VRG QV +GY+ 
Sbjct: 379 GNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN 433

Query: 365 NPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 424
            P  T ++   DGW  TGD+  +             G + +  R K+ I+ + G NV P 
Sbjct: 434 RPEETAKSF-LDGWFRTGDVVVMEED----------GFIRIVDRIKELII-TGGFNVYPA 481

Query: 425 ELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 480
           E+EE       +    V+G     P      D  E ++AA    +V    + L  E
Sbjct: 482 EVEEVLREHPGVEDAAVVG----LPR----EDGSEEVVAA----VVLEPGAALDPE 525

Length = 573

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  110 bits (277), Expect = 9e-26
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 277 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIK 333
           SGG +L       +E + G  +  GYGLTE+SPV A+  P   +  LG+VG P+  T +K
Sbjct: 340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPV-ASTNPYGELARLGTVGIPVPGTALK 398

Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393
           ++D + NE LP G +G + ++G QVM+GY++ P AT +ALD +GW  TGDI  I P    
Sbjct: 399 VIDDDGNE-LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD--- 454

Query: 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                  G + +  R KD I++S G NV P E+E+  +    +     IG    R G
Sbjct: 455 -------GFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (275), Expect = 1e-25
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)

Query: 273 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAA-----RRPTCNVLGSVGHP 326
           +A +SG   LP+ +   +E + G K+  GYGLTESSPV  +     +R    V GS+G P
Sbjct: 326 RACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKR----VPGSIGVP 381

Query: 327 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
              TE  I+  ET E LP G  G + V+G Q+M+GY+  P  T   L +DGWL+TGD+G+
Sbjct: 382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGY 440

Query: 387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
           +             G   ++ R KD IV S G NV P E+EE       ++++V IG
Sbjct: 441 MDED----------GFFYVKDRKKDMIVAS-GFNVYPREVEEVLYEHEKVQEVVTIG 486

Length = 563

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  106 bits (266), Expect = 1e-24
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 276 VSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---VLGSVGHPINHTE 331
           + GG  +P        EA+G KV   YG+TE  P++    P         + G P+   E
Sbjct: 214 LCGGAPVPRELARRAAEALGAKVVRAYGMTEV-PLVTVGTPDDPDDKRAATDGRPVPGVE 272

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
           ++IVD + N+V P G +G ++VRG Q+  GY   P  T+   D DGW  TGD+G +    
Sbjct: 273 VRIVDDDGNDV-PPGEEGELQVRGPQLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDAD- 329

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR--- 447
                    G L + GR KD I+   GEN+   E+E+  LR   + ++ V+   D+R   
Sbjct: 330 ---------GYLRITGRKKDIIIRG-GENISAREIEDLLLRHPAVAEVAVVAMPDERLGE 379

Query: 448 RPGAIIVP------DKEEVLMAAKRLSIVHADASELSKEKT 482
           R  A++VP         E+          H  A  L+K+K 
Sbjct: 380 RVCAVVVPAPGASLTLAELTE--------HLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (261), Expect = 9e-24
 Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 272 SKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI 327
           S   +S GG + +     + + +  G  +  GYGLTE SP+++          GS+G P+
Sbjct: 325 SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV 384

Query: 328 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
             TEIK+VD + NEV P G  G + V+G QVM GY++ P AT + + +DGWL TGDI  +
Sbjct: 385 PSTEIKLVDDDGNEV-PPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVM 442

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 444
                        G L +  R KD I++S G NV P E+E+  +    + ++  +G 
Sbjct: 443 DEE----------GFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVLEVAAVGV 488

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  103 bits (258), Expect = 3e-23
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 287 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 346
             F         +   LT      AA  P       +G PI    I+IVD E   +LP G
Sbjct: 340 RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEG 398

Query: 347 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 406
             G ++VRG  V  GY++NP A  +A  EDGW  TGD+G++  H          G L + 
Sbjct: 399 EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HD---------GRLTIT 447

Query: 407 GRAKDTIVLSTGENVEPLELEEA 429
           GR KD I+++ G N    E+E A
Sbjct: 448 GREKDMIIIN-GVNYYNHEIEAA 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  100 bits (251), Expect = 9e-23
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 271 ISKAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSP---VIAARRPTCNVLGSVG 324
           +S   V GGG   +   +        G+  + GYGLTE+          RP       +G
Sbjct: 198 LSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPK---PQCLG 254

Query: 325 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 381
            P+  T+ +++D ET E LP G +G + VRG QV +GY+  P AT ++    D   +  T
Sbjct: 255 IPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

Query: 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 441
           GD+G+I             G      R K  I +S G  V P E+E    +   + ++ V
Sbjct: 315 GDLGYIDEE----------GYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

Query: 442 IGQ-DQRR---PGAIIVPDKE 458
           IG+ D RR     A +V   +
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  100 bits (252), Expect = 1e-22
 Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-----------CNVLGSVG 324
           V GG +LP  +    E  GV+V   +G+TE+SP+    R               +    G
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344

Query: 325 HPINHTEIKIVDAETNEVLPAG-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383
            P+   E++IVD E NE+   G + G + VRG  V   Y+K+P  T+  L  DGW  TGD
Sbjct: 345 RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTE-ELTRDGWFRTGD 403

Query: 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
           +  I             G + +  RAKD I  S GE +  +ELE A +    + +  V+G
Sbjct: 404 VAVIDED----------GYIQITDRAKDVIK-SGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 444 QD----QRRPGAIIVP------DKEEVL 461
                   RP A++V        +EE+L
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELL 480

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 6/199 (3%)

Query: 9   NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD 68
           +P         +   +  + +I        +   +++ + + +   + D G        +
Sbjct: 55  DPSLPAERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDE 114

Query: 69  SNDARKHYKY-ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK 127
                        +  DD+A  +YTSGTTG PKGVMLTH+NLL     L +      GD+
Sbjct: 115 LLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDR 174

Query: 128 FLSMLPPWHVYERACGYFIFSRGIELM-----YTAVRNLKDDLQRYQPHYMISVPLVYET 182
            L +LP          +     G  L+           L D +++Y+   +  VP +   
Sbjct: 175 VLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRL 234

Query: 183 LYSGIQKQIFTSSAARRVV 201
           L    +++ +  S+ R V+
Sbjct: 235 LLKAPEEKKYDLSSLRLVL 253

Length = 412

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 99.6 bits (249), Expect = 3e-22
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ------ALDE 375
           S G P+   E++IVD ET   LP G  G + VRG  V  GY+  P AT +      A DE
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 376 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 435
            GWL TGD+G++             G L + GR KD I++  G N  P ++E    R+  
Sbjct: 416 GGWLRTGDLGFLH-----------DGELYVTGRLKDLIIIR-GRNHYPQDIEATVERAHP 463

Query: 436 IRQIVVIGQDQRRPGAIIVPDKEE---VLMAAKRLSIVHADASELSKE 480
             +            A  V    E   V++A  R   + AD + L++ 
Sbjct: 464 ALRPG-------AAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 21/138 (15%)

Query: 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
            VG PI+  EI+IVD +  EVLP  + G ++++G  V  GY+ NP ATK+++  DGWL T
Sbjct: 315 EVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKT 373

Query: 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 441
           GD+G++             G LV+ GRAKD I+++ G+N  P ++E  A          V
Sbjct: 374 GDLGFLR-----------NGRLVITGRAKDIIIVN-GQNYYPHDIERVA--------EQV 413

Query: 442 IGQDQRRPGAIIVPDKEE 459
            G    R  A  V D++E
Sbjct: 414 EGIKLGRVAACGVYDEKE 431

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  100 bits (251), Expect = 4e-22
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 14/126 (11%)

Query: 276  VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP----------TCNVLGSVG 324
            V+G   L   + D F E  G+++  GYG TE+SPV +   P          T +  GSVG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 325  HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 381
             P+    ++IVD ET E LP G  G++ + G QVM+GY  +P  T + +   D  GW  T
Sbjct: 964  MPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVT 1023

Query: 382  GDIGWI 387
            GD G +
Sbjct: 1024 GDKGHL 1029

Length = 1146

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 98.5 bits (246), Expect = 7e-22
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 300 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           GYG+TE+ PV+A     A+ P     GS G  + + E+KIVD ET   LP    G + +R
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
           G Q+M+GY  +P AT   +D+DGWL+TGDIG+I
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Length = 537

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.0 bits (244), Expect = 9e-22
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)

Query: 277 SGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI-------AARRPTCNVLGSVGHPINH 329
           +GG   P  +   +   G     G+G+TE+SP +       A R+      GS+G P+  
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKV-----GSIGKPVLF 325

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
            + +++D   N+V   G  G + +RG  VM+ Y+  P AT++ + +DGWL TGD+  +  
Sbjct: 326 CDYELIDENKNKV-EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE 383

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR- 448
                      G + + GR K+ I+ S GEN+ PLE+E+   + S + ++ V+G+   + 
Sbjct: 384 D----------GFVYIVGRKKEMII-SGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKW 432

Query: 449 ---PGAIIVPDKEEVLMAA 464
              P A IV     VL+  
Sbjct: 433 GEIPIAFIVKKSSSVLIEK 451

Length = 496

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 301 YGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 358
           YG+TE++  I    P      LGS G P+   E+KI       V+P   +G + V+G  V
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGV--VVPPFEEGEIVVKGPNV 342

Query: 359 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 418
            +GY     AT++   +DGW  TGDIG++             G L +  R  D I+ S G
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEE----------GFLYVLDRRSDLII-SGG 390

Query: 419 ENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKE 458
           EN+ P E+EE  L    + +  V+G    +    P A +V   E
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434

Length = 483

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 290 YEAIGVKVQVGYGLTESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLPAGSK 348
            E  G  +  GYGL+E+SPV            G++G P+  TE+ I D + N+ LP G  
Sbjct: 348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGND-LPLGEP 406

Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           G + +RG QVM GY+  P  T + +  DG+  TGD+G +     RG ++       +  R
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE---RGYTK-------IVDR 456

Query: 409 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
            KD I++S G NV P E+EE       + ++  +G
Sbjct: 457 KKDMILVS-GFNVYPNEIEEVVASHPGVLEVAAVG 490

Length = 557

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 59/173 (34%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 273 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGH 325
           +  ++G   LP+ +   F    GV V  GYG+TE + V A       RRP     GSVG 
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRP-----GSVGL 179

Query: 326 PINHTEIKIV----DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
            + +T +++               G  G++ +RG  V  GY  N +    A  EDGWLNT
Sbjct: 180 RLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNT 238

Query: 382 GDIGWIAPHHSRGRSRRCG--GVLVLEGRAKDTIVLSTGENVEPLELEEAALR 432
           GD+G            R    G L L GRAKD I+   G N++P  +EEA LR
Sbjct: 239 GDLG------------RIDADGYLWLTGRAKDLIIRG-GHNIDPQMIEEALLR 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 94.2 bits (235), Expect = 1e-20
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)

Query: 301 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
           YG+TE     S+P    RR      G+VG P+    +++ D ET   LP G  G+++V+G
Sbjct: 301 YGMTETNMNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355

Query: 356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 415
             V +GY++ P  T +    DG+  TGD+G I             G + + GR KD I+ 
Sbjct: 356 PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER----------GYVHIVGRGKDLII- 404

Query: 416 STGENVEPLELE 427
           S G NV P E+E
Sbjct: 405 SGGYNVYPKEVE 416

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 277 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINH 329
           +GG      I     A    K+   YGLTE+       P    RRP      S+G  I +
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRP-----DSIGKAIPN 179

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----DGWLNTGDI 384
            E+ +VD + N   P G  G +  RG+ VM+GY+ +P AT + L       +  L TGD+
Sbjct: 180 VELWVVDEDGNRCAP-GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238

Query: 385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 444
             +             G L   GR KD ++ + G  V P E+EE      L+ +  VIG 
Sbjct: 239 VRMDEE----------GYLYFVGR-KDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287

Query: 445 DQRRPGAIIV----------PDKEEVLM-AAKRL 467
                G  IV           D++E+L    K L
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 291 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 350
            A+G+ V  GYGL+E + V++   P  +  GSVG P+ H ++ I  A   E+L       
Sbjct: 258 RALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI--ANDGEIL------- 308

Query: 351 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 410
             VRGS  M GY   P AT      D W  TGD+G +             G L + GR K
Sbjct: 309 --VRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEE----------GYLYINGRKK 349

Query: 411 DTIVLSTGENVEPLELEEAALRSSL-IRQIVVIGQDQRRPGAIIVPDKE---EVLMAA 464
           + I+ S G NV P E  E+ L+ +  I Q VV G  Q    A+IVP      + L AA
Sbjct: 350 NLIITSFGRNVSP-EWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 27/189 (14%)

Query: 278 GGGSLPMHIDLFYEAI--GVKVQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKI 334
           GG ++P    L  EA   G+ + + YG+TE+ S V  A     +    VG P+   EIKI
Sbjct: 227 GGSAIP--APLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI 284

Query: 335 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394
                         G + V+G+ +M+GY      T  A ++ GW NTGDIG +       
Sbjct: 285 KVDNKEGH------GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGE---- 333

Query: 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 450
                 G L + GR  D I+ S GEN+ P E+E    +   I++ VV+   D      P 
Sbjct: 334 ------GFLYVLGRRDDLII-SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386

Query: 451 AIIVPDKEE 459
           A IV + + 
Sbjct: 387 AYIVSESDI 395

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 106/467 (22%), Positives = 167/467 (35%), Gaps = 130/467 (27%)

Query: 77  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP--P 134
               I  D +A Y++TSG+TG PK V+ T + +   I     + P E        L   P
Sbjct: 213 AIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMP 272

Query: 135 WH------------VYERACGYFIFSRGI-ELMYTAVRNLKDDLQRYQPHYMISVPLVYE 181
           W+            ++     Y    + +  +    +RNL++      P    +VP  Y 
Sbjct: 273 WNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----ISPTVYGNVPAGYA 328

Query: 182 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI----YEGFCLTRNQKQPSYLVAL 237
            L   ++K                +R SF    FK +    Y G               L
Sbjct: 329 MLAEAMEKD-------------DALRRSF----FKNLRLMAYGG-------------ATL 358

Query: 238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKV 297
            D L+ R+                      A+ +   G         H   FY       
Sbjct: 359 SDDLYERM---------------------QALAVRTTG---------HRIPFY------- 381

Query: 298 QVGYGLTESSPVI-----AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 352
             GYG TE++P          R      G +G P+   E+K+         P G K  V+
Sbjct: 382 -TGYGATETAPTTTGTHWDTERV-----GLIGLPLPGVELKLA--------PVGDKYEVR 427

Query: 353 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHH-SRGRSRRCGGVLVLEGRAK 410
           V+G  V  GY K+P  T  A DE+G+   GD   ++ P    +G        L+ +GR  
Sbjct: 428 VKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKG--------LIFDGRVA 479

Query: 411 DTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 468
           +   LSTG   +V  L  +  A  S +I   VV GQD+   G +  P+      A ++L+
Sbjct: 480 EDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPN----PAACRQLA 535

Query: 469 IVHADASE--LSKEKTISLLYGELRKWTSKC---SFQIGPIHVVDEP 510
                A E  +     +++L   L    ++    S +I    ++ EP
Sbjct: 536 GDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP 582

Length = 624

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 92.2 bits (229), Expect = 7e-20
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 267 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV---------IAARRPTC 317
           +A+    A  +GG        L +   G+ +  G+G++E+  V         I A+    
Sbjct: 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK---- 304

Query: 318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 377
              G+ G P    + ++VD + N+  PAG  G + +RG  +  GY++ P AT +A   DG
Sbjct: 305 --AGAAGIPTPTVQTRVVDDQGNDC-PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 378 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 437
           W  TGDI            R   G   +  R KD + +S GENV P E+E        IR
Sbjct: 362 WFRTGDIA----------RRDADGFFWVVDRKKD-MFISGGENVYPAEIEAVLADHPGIR 410

Query: 438 QIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 493
           +  V+G          + D +  EV      L+IV AD + L  E+  S L   L K+
Sbjct: 411 ECAVVG----------MADAQWGEV----GYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 91.5 bits (228), Expect = 1e-19
 Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 32/190 (16%)

Query: 289 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT---------EIKIVDAET 339
             E +G  +Q  +G+ E              L      I  T         EI+IVD + 
Sbjct: 275 VEERLGCPLQQVFGMAEGLV-------NYTRLDDPPDVIMRTQGRPISPADEIRIVDDQG 327

Query: 340 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 399
             V P G  G +  RG   ++GY++ P    +A  +DG+  TGD+  I            
Sbjct: 328 EPV-PPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDA---------- 376

Query: 400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIVP 455
            G   + GR KD I    GE + P E+E   L    +    V+G  D+    R  A +VP
Sbjct: 377 DGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVP 435

Query: 456 DKEEVLMAAK 465
                   A+
Sbjct: 436 RGGAAPTLAE 445

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 90.0 bits (224), Expect = 3e-19
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 291 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGS---------VGHPINH-TEIKIVDAE 338
           E +G +V   YGLTE+     +   +P  + L +          G       E+ +VD E
Sbjct: 302 EELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPE 361

Query: 339 TNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 396
           T + +P   K  G + +RG+ VM+GY+KNP AT++A    GW ++GD+  + P       
Sbjct: 362 TMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPD------ 414

Query: 397 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RPGAI 452
               G + ++ R+KD I++S GEN+  +E+E    +   + +  V+ + D++    P A 
Sbjct: 415 ----GYIEIKDRSKD-IIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 453 IVPDK-----EEVLMA 463
           +V        EE L+ 
Sbjct: 470 VVLKPGASVTEEELIE 485

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 89.3 bits (222), Expect = 5e-19
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 276 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           VS G +LP  + + + EA G+++  G G TE   +  + RP     G+ G P+   E ++
Sbjct: 214 VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARL 273

Query: 335 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394
           VD    EV PAG+ G + VRG  +  GY+  P  T++ L  DGWL TGD           
Sbjct: 274 VDESGREV-PAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDR---------- 321

Query: 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 450
            SR   G    +GRA D I +S G+ V PLE+E A      + +  V+   D+    R  
Sbjct: 322 FSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLK 380

Query: 451 AIIVPDKEE 459
           A +VP   E
Sbjct: 381 AFVVPRPGE 389

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 87.3 bits (217), Expect = 4e-18
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 42/173 (24%)

Query: 279 GGSLPMHIDL---FYEAIGVKVQVGYGLTES------SPVIAARRPTCNVLGSVGHPINH 329
            G+ P+ +++   F  A GV++  GYGLTE+      +P    RR      GSVG  + +
Sbjct: 340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRI-----GSVGLRLPY 394

Query: 330 TEIKIV----------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 379
             +++V          D   +EV      G++ + G  V  GY    +  K    EDGWL
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEV------GVLCIAGPNVFSGYL-EAAHNKGLWLEDGWL 447

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 432
           NTGD+G I             G   L GRAKD I+   G N++P  +EEA LR
Sbjct: 448 NTGDLGRIDAD----------GYFWLTGRAKDLIIRG-GHNIDPAAIEEALLR 489

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 294 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 351
           G+ +   YGLTE+SP  A   P       GS+G PI  T+  I D +   VL  G  G +
Sbjct: 354 GLTLVEAYGLTETSPA-ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGEL 411

Query: 352 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 411
            ++G QVM+GY+K P  T + +D DGWL+TGDI          R    G V +++ R KD
Sbjct: 412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI---------ARMDEQGFVYIVD-RKKD 461

Query: 412 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAII 453
            I++S G NV P E+E+       + ++  +G    + G I+
Sbjct: 462 MILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 300 GYGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
            YGLTE+     ++ A R     +GS G  + H EI+I D      LP   KG + +RG 
Sbjct: 296 AYGLTETCSGDTLMEAGREI-EKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGP 353

Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 416
           +V +GY+K+P  T +A     W  +GD+G++             G L L  R KD I +S
Sbjct: 354 KVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE----------GFLYLTDRKKDMI-IS 401

Query: 417 TGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIV 454
            GEN+   E+E        + +  VIG  D R   R  A++V
Sbjct: 402 GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 291 EAIGVKVQVGYGLTESSPV--IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 348
            A+G K+   +G+TE+  V       P      + G P+   E+++VDA+    LPAG  
Sbjct: 334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAP-LPAGQI 392

Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           G ++VRG     GY K P       D DGW +TGD+  I             G + + GR
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLN--GTDADGWFDTGDLARIDA----------DGYIRISGR 440

Query: 409 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 455
           +KD +++  GEN+  +E+E    R   I Q+ ++     R G    A +VP
Sbjct: 441 SKD-VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
           VG P+  TE KI D ET E+LP G++G + VR   +++GY+  P AT +AL  DGWL+TG
Sbjct: 389 VGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG 447

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           DIG I             G L   GR K+ + ++ G +V P E+E    +   +    V+
Sbjct: 448 DIGKIDEQ----------GFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVV 496

Query: 443 GQDQRRPGAIIV 454
           G+     G + V
Sbjct: 497 GRPDPDKGQVPV 508

Length = 567

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.4 bits (203), Expect = 1e-16
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 120/396 (30%)

Query: 91  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFS 148
           YTSGTT +PKGV+++H+     + +L  I+  E G    +L  LP +H     C  + F+
Sbjct: 193 YTSGTTADPKGVVISHRGAY--LSTLSAIIGWEMGTCPVYLWTLPMFH-----CNGWTFT 245

Query: 149 RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI 208
            G     TA R       R+     ++ P +Y                 + +    +  +
Sbjct: 246 WG-----TAARGGTSVCMRH-----VTAPEIY-----------------KNIEMHNVTHM 278

Query: 209 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA 268
               T F  + +G  L  + +                      P+H+L            
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSG--------------------PVHVL------------ 306

Query: 269 IGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVI----------------- 310
                   +GG   P  +    + +G +V   YGLTE++ PV+                 
Sbjct: 307 --------TGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 311 -AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPS 367
               R   ++LG         ++ + + ET E +P   K  G + ++GS +M+GY KNP 
Sbjct: 359 ELKARQGVSILGL-------ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK 411

Query: 368 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 427
           AT +A  + GWLNTGD+G I P           G + ++ R+KD I++S GEN+  +E+E
Sbjct: 412 ATSEAF-KHGWLNTGDVGVIHPD----------GHVEIKDRSKD-IIISGGENISSVEVE 459

Query: 428 EAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE 459
               +   + +  V+          P A +V +K E
Sbjct: 460 NVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGE 495

Length = 579

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 81.8 bits (203), Expect = 2e-16
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 31/209 (14%)

Query: 278 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSVGHPINHT 330
            G +L   +      +     G ++++  G G+TE++P         +  G++G P    
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGC 401

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAP 389
           E+K+V        P G K  V+V+G  V  GY++ P  T +A DE+G+  +GD   ++ P
Sbjct: 402 EVKLV--------PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDP 453

Query: 390 HH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQ 446
               RG        L+ +GR  +   LS+G   +V PL     +  + L++ +V+ G D+
Sbjct: 454 ADPERG--------LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR 505

Query: 447 RRPGAIIVPDKEEVLMAAKRLSIVHADAS 475
              G ++ P+    L A +RL+ + ADAS
Sbjct: 506 DEIGLLVFPN----LDACRRLAGLLADAS 530

Length = 614

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 294 GVKVQVGYGLTESSPV------------IAARRPTCNVLGSVGHPINHTEIKIVDAETNE 341
           GV+VQ  YGLTE S +            IA +        SVG  + + E+K +D +T  
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-------NSVGFILPNLEVKFIDPDTGR 381

Query: 342 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 401
            LP  + G + VR   VMQGY+ N   T + +DEDGWL+TGDIG+I            G 
Sbjct: 382 SLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD---------GD 432

Query: 402 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAI 452
           + +++ R K+ I    G  V P ELE   L    +    V+       G I
Sbjct: 433 IFIVD-RIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 31/180 (17%)

Query: 301 YGLTESSPVIAARRPTCNV--------LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 352
           +G TE SPV      TC +        LGSVG  I     ++VD   N+V P G  G + 
Sbjct: 323 FGQTEMSPV------TCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV-PVGEVGEIV 375

Query: 353 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 412
            R   +M GY+ NP AT +A    GW ++GD+          R    G V V++ R KD 
Sbjct: 376 YRAPTLMSGYWNNPEATAEAFA-GGWFHSGDL---------VRQDEEGYVWVVD-RKKDM 424

Query: 413 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 468
           I+ S GEN+   E+E        I ++ VIG+   +    P A+     ++  +  + L+
Sbjct: 425 II-SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLA 483

Length = 542

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 324 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383
           G  +   EI+I + E    LP    G + VRG  +M GYF++  +    L  DGWL+TGD
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-----LRSSLIRQ 438
           +G++             G L + GRAKD I+++ G N+ P ++E  A     LRS     
Sbjct: 446 LGYLL-----------DGYLYITGRAKDLIIIN-GRNIWPQDIEWIAEQEPELRS---GD 490

Query: 439 IVVIGQDQRRPGAIIV 454
                  Q     I++
Sbjct: 491 AAAFSIAQENGEKIVL 506

Length = 579

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
            ++  D +   +LP G  G +++R   +M+GY  NP AT +AL +DG+  TGD+G     
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLG----- 414

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG---QDQR 447
           ++RG      G  V + R  D++ L  G  V P E+E A      +    V+G     + 
Sbjct: 415 YTRGD-----GQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468

Query: 448 RPGAIIVPD-----KEEVLMAAKR 466
            P A ++P       E  LMAA R
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 278 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-AARRPTCNVLGSVGHPINH 329
            G +LP  +      L     G ++ +  G G TE++P       PT    G +G P   
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS-GVIGLPAPG 355

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA- 388
           TE+K+V        P G K  V+V+G  V  GY+++P  T +A DE+G+   GD      
Sbjct: 356 TELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVD 407

Query: 389 PHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQD 445
           P    RG        LV +GR  +   L++G   +V  L +   A  + L++  VV G D
Sbjct: 408 PDDPERG--------LVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD 459

Query: 446 QRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 477
           +   G ++ P+   +    +   +  A A ++
Sbjct: 460 RDEIGLLVFPN---LAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%)

Query: 320 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 379
           L ++G P+   E+++VD +   VLP    G++++RG  V  GY         A D DGWL
Sbjct: 359 LATLGPPLPGLEVRVVDEDGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWL 416

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ- 438
           +TGD+G++             G +V+ GR KD I+++ G N+ P ++E AA R   +R  
Sbjct: 417 DTGDLGYLTE----------EGEVVVCGRVKDVIIMA-GRNIYPTDIERAAARVEGVRPG 465

Query: 439 -IVVIGQD--QRRPG-AIIV-----PDKEEV 460
             V +  D    R G A+ V      D  EV
Sbjct: 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEV 496

Length = 545

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)

Query: 276 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           VS G  L P  ID +  A G+ ++ GYG TE+  ++A         GS+G P     + I
Sbjct: 203 VSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAI 262

Query: 335 VDAETNEVLPAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           +D E NE LP G +G + VR       + +GY K+P  T+  +    W  TGD       
Sbjct: 263 IDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAI---- 316

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                 +   G     GRA D ++ S+G  + P E+E A +    + +  V+G       
Sbjct: 317 ------KDEDGYFWFVGRADD-VIKSSGYRIGPFEVESALIEHPAVAEAAVVG------- 362

Query: 451 AIIVPDKEEVLMAAKRLSIVHA 472
               PD         R  +V A
Sbjct: 363 ---SPDPV-------RGEVVKA 374

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 74  KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSM 131
                  +  DD+A   YT GTTG PKG MLTH+NL+  ++ +   V    E  D+FL+ 
Sbjct: 115 PLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174

Query: 132 LPPWHVYERACG--YFIFSRGIELMYTAVR--NLKDDLQRYQPHYMISVPLVYETLYSGI 187
           LP +H++         +      ++    R  N+  +++RY+      VP    TLY+ +
Sbjct: 175 LPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP----TLYNAL 230

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 34/221 (15%)

Query: 289 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 348
           FY A+GV +   YG TE+     A RP     GS G P+    ++ VD E N V P   +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPV-KNGSSGLPLPGYAVRRVDDEGNPVPPGVGE 368

Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
            +V++    +   Y+ +P   K+A     +  TGD                 G   L GR
Sbjct: 369 LVVRLPWPGMALTYWNDPERYKEAYFGRWYR-TGDWAERDED----------GYFWLHGR 417

Query: 409 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 468
           + D I +S G+ + PLE+E   L    + +  V+G           P K ++++A   L+
Sbjct: 418 SDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPD--------PGKGQIVLAFVVLA 468

Query: 469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 509
               + +EL++         E+R+  ++    IGP  +  +
Sbjct: 469 -AGVEPNELAE---------EIRRHVAR---NIGPHAIPRK 496

Length = 528

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 320 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 379
           +G+ G      E++I D E  E LP G  G + V G  V  GY+ NP A  +A   DGW 
Sbjct: 339 IGTCGFERTGMEVQIQDDEGRE-LPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWF 396

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 439
            TGD+G     H   R     G L + GRA D + +S G NV P E+EE  L    + ++
Sbjct: 397 RTGDLG-----HLDAR-----GFLYITGRASD-MYISGGSNVYPREIEEKLLTHPAVSEV 445

Query: 440 VVIGQDQRRPGAIIVPD 456
            V+G          VPD
Sbjct: 446 AVLG----------VPD 452

Length = 528

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 78.0 bits (193), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-RA 141
            DD A  ++TSG+ G PKGV+L+H+NLL  I  +  ++     D  L  LP +H +    
Sbjct: 144 PDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTV 203

Query: 142 CGYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI----FT 193
                   G+ ++Y       + + + ++ Y+   +   P    T   G  +      F+
Sbjct: 204 TLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTP----TFLRGYARNAHPEDFS 259

Query: 194 SSAARRVVA-----RALIRISFAYTAFKRIYEGF 222
           S   R VVA         R  F      RI EG+
Sbjct: 260 S--LRLVVAGAEKLPEATRELFEEKFGIRILEGY 291

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 60/188 (31%), Positives = 79/188 (42%), Gaps = 36/188 (19%)

Query: 280 GSLPMHIDLFYEAIG----VKVQVGYGLTESSPVIAARRP------TCNVLGSVGHPINH 329
           G+ PM      EAI     +  Q  YG TE+  VI   R           L S G P   
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
             + ++D +  EV   G  G + VRG  VM GY+  P  T +A   DGWL+TGD+     
Sbjct: 348 LRVALLDEDGREV-AQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDV----- 400

Query: 390 HHSRGRSRR-CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                 +R    G   +  R KD IV + G NV P E+E+       + Q+ VIG     
Sbjct: 401 ------AREDEDGFYYIVDRKKDMIV-TGGFNVFPREVEDVLAEHPAVAQVAVIG----- 448

Query: 449 PGAIIVPD 456
                VPD
Sbjct: 449 -----VPD 451

Length = 524

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 77.3 bits (191), Expect = 5e-15
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 291 EAIGVKVQVGYGLTES---SPVIA----------ARRPTCNVLGSVGHPINHTEIKIVDA 337
           E IG  +   YGLTE+   + V A            R        V +P+    + ++D 
Sbjct: 317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPL-QEGVTVLDP 375

Query: 338 ETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 395
           +T + +PA  +  G +  RG+ VM+GY KNP AT++A    GW +TGD+  + P      
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPD----- 429

Query: 396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 432
                G + ++ R+KD I++S GEN+  +E+E+   R
Sbjct: 430 -----GYIKIKDRSKD-IIISGGENISSIEVEDVLYR 460

Length = 545

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 77.1 bits (190), Expect = 7e-15
 Identities = 65/204 (31%), Positives = 88/204 (43%), Gaps = 46/204 (22%)

Query: 278 GGGSLPMHIDLFYEAIGV----KVQVGYGLTE--SS--------PVIAARRPTCNVLGS- 322
           GGGSL     L  +A  +    K+   YG+TE  SS        P + + + T   +   
Sbjct: 296 GGGSLSS--RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353

Query: 323 ------------VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 370
                       VG P  H E+KI   E++ V      G +  RG  VM GY+   S T 
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRILTRGPHVMLGYWGQNSETA 407

Query: 371 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 430
             L  DGWL+TGDIGWI             G L L GR+ D I  + GENV P E+E   
Sbjct: 408 SVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 431 LRSSLIRQIVVIGQDQRRPGAIIV 454
            +   +  +VV+G    R   ++V
Sbjct: 457 SQHPGVASVVVVGVPDSRLTEMVV 480

Length = 563

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 62/189 (32%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 291 EAIGVKVQVGYGLTESSPVIAARRPTCNVL-----GSVGHPINHTEIKIVDAETNEVLPA 345
           + +G+ V   YG TE++ V+      C  L     GS+G P+   E+ +VD     V P 
Sbjct: 229 DELGLTVNEFYGQTEANLVVG----NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPP- 283

Query: 346 GSKGIVKV-RGSQVM-QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 403
           G  G + V R   VM  GY+ NP AT  A     WL TGD+G           R   G L
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATA-AKFAGDWLLTGDLG----------RRDADGYL 332

Query: 404 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 463
             +GRA D I  S+G  + P E+EE  L+   + +  V+G          VPD E     
Sbjct: 333 WFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVG----------VPDPE----- 376

Query: 464 AKRLSIVHA 472
             R  IV A
Sbjct: 377 --RGEIVKA 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 276 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR-----RPTCNVLGSVGHPINH 329
           VSG  +LP+ + D      G +    YG+TE+   ++ R     RP     G VG P+  
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-----GWVGLPLAG 301

Query: 330 TEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
            E ++VD E    +P    + G ++VRG  +  GY   P AT  A   DGW  TGD+  +
Sbjct: 302 VETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
            P           G+  + GR    ++ S G  +   E+E A L    +R+  V+G
Sbjct: 361 DP----------DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVG 406

Length = 471

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 301 YGLTESSPVI-------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 353
           YG TE +P+          RRP     GS G P+ + E ++VD + N+V   G  G +  
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRP-----GSAGRPVLNVETRVVDDDGNDV-APGEVGEIVH 372

Query: 354 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 413
           R  Q+M GY+ +P  T +A    GW ++GD+G +             G + +  R KD I
Sbjct: 373 RSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE----------GYITVVDRKKDMI 421

Query: 414 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI 469
             + GENV   E+EEA      + ++ VIG    +      A++VP K    +    L I
Sbjct: 422 K-TGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP-KAGATVTEDEL-I 478

Query: 470 VHADASELSKEKT 482
            H  A  L+  K 
Sbjct: 479 AHCRAR-LAGFKV 490

Length = 523

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 75.8 bits (186), Expect = 2e-14
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 26/181 (14%)

Query: 277 SGGGSLPMHIDLFYE-AIGVKVQVGYGLTE------SSPVIAARRPTCNVLGSVGHPINH 329
           SGG  LP+ +  F+E   G+K++ G+G+TE        P     +P     GS+G  +  
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKP-----GSIGLMLPG 373

Query: 330 TEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
            E+ +V  +   +VLP G  G +++RG  V +GY+  P  + +A   D +L TGDIG++ 
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMD 432

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR 447
                       G   L  R KD I+ S G NV P  +E+A      +++++VIG  DQ 
Sbjct: 433 TD----------GYFFLVDRKKDMII-SGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481

Query: 448 R 448
           R
Sbjct: 482 R 482

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 40/193 (20%)

Query: 287 DLFYEAIGVKVQVGYGLTES-------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAET 339
           D F E  GV++   YG+TE+        P    R P      S+G P    E +I D + 
Sbjct: 305 DAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWP------SIGRPGFCYEAEIRD-DH 357

Query: 340 NEVLPAGSKG---IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR- 395
           N  LPAG  G   I  V G  + + Y+ +P AT + L+ DGWL+TGD G++      G  
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYV---DEEGFF 414

Query: 396 ---SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGA 451
               RRC             ++   GENV  +ELE        I+ IVV+G +D  R  A
Sbjct: 415 YFVDRRC------------NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462

Query: 452 I---IVPDKEEVL 461
           I   +V ++ E L
Sbjct: 463 IKAFVVLNEGETL 475

Length = 517

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.9 bits (185), Expect = 2e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 39/171 (22%)

Query: 291 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 350
           E  G++   GYGLTE +  + A+R   + L  VG P+   E+K+VD    E+        
Sbjct: 261 EQQGIRCWCGYGLTEMASTVCAKR--ADGLAGVGSPLPGREVKLVD---GEIW------- 308

Query: 351 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRA 409
             +RG+ +  GY++        ++++GW  T D G W              G L + GR 
Sbjct: 309 --LRGASLALGYWRQ-GQLVPLVNDEGWFATRDRGEWQ------------NGELTILGRL 353

Query: 410 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI-------GQDQRRPGAII 453
            D +  S GE ++P E+E    +  L++Q+ V+       GQ   RP A++
Sbjct: 354 -DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQ---RPVAVV 400

Length = 458

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 74.2 bits (183), Expect = 4e-14
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED---GWL 379
           +G+P       I+D +   V P G +G + + G QV  GY  NP  T +A  +D    W 
Sbjct: 274 IGYPKPGLRALILDEDGRPV-PPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWY 332

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 439
            TGD+ ++             G+LV  GR    I L  G  +E  E+E A      + + 
Sbjct: 333 RTGDLVYLED----------DGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEA 381

Query: 440 VVIGQD 445
           VV+   
Sbjct: 382 VVLPVP 387

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 74.2 bits (182), Expect = 4e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 291 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAGSK 348
           E +G  +   +G+TE+  V            S   G P+   E+K++DA     L  G  
Sbjct: 332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGET 390

Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           G + VRG     GY K P     + D +GW +TGD+ +              G + + GR
Sbjct: 391 GRLLVRGCSNFGGYLKRPHL--NSTDAEGWFDTGDLAFQDAE----------GYIRINGR 438

Query: 409 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 455
           +KD +++  GEN+  +E+E    +   + Q+ ++     R G    A++VP
Sbjct: 439 SKD-VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 5e-14
 Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 272 SKAGVSGGG-SLPMHI-DLFYEAIGVKVQVGYGLTES-SPVIA--ARRPTCNVLGSVGHP 326
           S   + GGG ++P  + +   E  G+    GYGLTE+ +   +    RP    LG    P
Sbjct: 306 SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI---P 362

Query: 327 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 383
               + +++D ET E LP G  G + V G QV +GY+  P AT +A  E DG  +  TGD
Sbjct: 363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422

Query: 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
           +G +             G   +  R K  I  S G  V P E+E    +   I++  VI 
Sbjct: 423 LGRMDEE----------GYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQEACVIA 471

Query: 444 -QDQRRPG----AIIVPDKE 458
             D RR G    A++V   E
Sbjct: 472 TPDPRR-GETVKAVVVLRPE 490

Length = 546

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 38/209 (18%)

Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV--IAARRP---------TCNVLGSVG 324
           V GG ++P  +   +E +GV+V+  +G+TE SP+  +AA +P           +VL   G
Sbjct: 300 VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG 359

Query: 325 HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
           +P    E+KI D    E LP   K  G +KVRG  V   Y++      + LD+DG+ +TG
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           D+  I  +          G + +  R+KD I  S GE +  ++LE  A+    + +  VI
Sbjct: 416 DVATIDAY----------GYMRITDRSKDVIK-SGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 443 GQDQ----RRPGAIIV------PDKEEVL 461
           G        RP  I+         +EE+L
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEIL 493

Length = 542

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 29/240 (12%)

Query: 9   NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD 68
           NP    R    + + A  + +I      + +         V     + D           
Sbjct: 94  NPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEA 153

Query: 69  SNDARKH--YKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--EN 124
                         +  DD+A  +YTSGTTG PKGV+LTH+NLL     +   +      
Sbjct: 154 LAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTP 213

Query: 125 GDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV---------RNLKDDLQRYQPHYMIS 175
            D  LS LP +H++       + +  +    T V           +   +++Y+   +  
Sbjct: 214 DDVVLSWLPLFHIF--GLIVGLLA-PLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSG 270

Query: 176 VPLVY----------ETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT 225
           VP             +   S   + + +  A    +   L+           I EG+ LT
Sbjct: 271 VPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP---LPPELLERFEERFGPIAILEGYGLT 327

Length = 534

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 73.0 bits (180), Expect = 2e-13
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           T   DD AT +++SG+ G PKGVML+H N+L  I  + D+    N D  LS LP +H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 300 GYGLTESSPVIAARRPTCNVL---GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           GYG+TES+ V   R      L    SVG    + + K+VD  T  +LP G+ G + ++G 
Sbjct: 351 GYGMTESTAV-GTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP 409

Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 416
            VM+GY  NP AT+  +D+DGWL TGDI +              G L +  R K+ I+  
Sbjct: 410 GVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED----------GYLYIVDRLKE-IIKY 458

Query: 417 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADA 474
            G  + P +LE   +    I    V            VPDKE  E+ +A     +V    
Sbjct: 459 KGFQIAPADLEAVLISHPEIIDAAVTA----------VPDKECGEIPVAF----VVRRQG 504

Query: 475 SELSKEKTISLL------YGELRK 492
           S LS+E  I+ +      Y ++RK
Sbjct: 505 STLSQEAVINYVAKQVAPYKKVRK 528

Length = 560

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 40/174 (22%)

Query: 301 YGLTESSPVIAARRPTCNVL---------------GSVGHPINHTEIKIVDAETNEVLPA 345
           YGL ES+  +    P   +                  +G+PI   E++I  +  +     
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRI--SPGDGAAGV 367

Query: 346 GSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 403
             + I  +++RG+ +M GY          +D D W  TGD+G++             G L
Sbjct: 368 AGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLV-----------DGGL 411

Query: 404 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ--IVVIGQDQR--RPGAII 453
           V+ GRAK+ I ++ G N+ P E+E  A +   +R+  +V +G  +   RPG +I
Sbjct: 412 VVCGRAKELITVA-GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464

Length = 525

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 70.3 bits (173), Expect = 9e-13
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
              DDIA   YTSG+TG PKGVM+TH NLL  +R++      +  D  +S LP +H
Sbjct: 145 PDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.8 bits (172), Expect = 1e-12
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 41/215 (19%)

Query: 9   NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD 68
           + EF   +A  L     +R +I+         P       V  Y+E++            
Sbjct: 110 DSEFVPLLAAILPQLPTVRTVIVE-----GDGPAAPLAPEVGEYEELLA----------- 153

Query: 69  SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LH--QIRSLYDIVPAENG 125
              A   + +  I  +D A  +YTSGTTG+PKGV+L+H+NL LH   + +   +      
Sbjct: 154 --AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR---D 208

Query: 126 DKFLSMLPPWHVYERACGYFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYET 182
           D +L ++P +HV+     Y     G + +        NL D ++  +  +  +VP +++ 
Sbjct: 209 DVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 183 L----------YSGIQKQIFTSSAARRVVARALIR 207
           L          +S ++  I+  +A    +  AL+R
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAA----LPPALLR 299

Length = 521

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 319 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 377
           ++ + G P++   E+++VDA+ N V P G  G +  RG   ++GY++ P    +A D DG
Sbjct: 356 IIHTQGRPLSPDDEVRVVDADGNPVAP-GEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414

Query: 378 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 437
           +  +GD+            R   G LV+EGR KD I    GE +   E+E   LR   + 
Sbjct: 415 FYRSGDL----------VRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH 463

Query: 438 QIVVIG-QDQ---RRPGAIIVPDKEEVLMAAK 465
              ++   D+    +  A IV  KE  L AA+
Sbjct: 464 DAALVAMPDELLGEKSCAFIVV-KEPPLRAAQ 494

Length = 542

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 67.5 bits (166), Expect = 3e-12
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
           DD A   YTSGTTG PKG MLTH+N+L+   S+   +    GD+ L  +P +HV+
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 36/187 (19%)

Query: 301 YGLTESSPVIAARRPTCNVLG--SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 358
           YG+TE++  IA  +P   + G  S G  + H +I I          A   G + ++   +
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSL 311

Query: 359 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 418
             GY+  P    Q LD  G   T D+G++               L + GR    I ++ G
Sbjct: 312 ALGYY--P----QILDSQGIFETDDLGYLDAQGY----------LHILGRNSQKI-ITGG 354

Query: 419 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADA 474
           ENV P E+E A L + L++ + V+G      G    AI VP    +        +  A  
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIK 410

Query: 475 SELSKEK 481
            +LS  K
Sbjct: 411 DQLSPFK 417

Length = 452

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD--AETNEVLPAGSKG-I 350
           G KV + YG TE+   +  R P     G+   P   +E++IV      +E LP G +G +
Sbjct: 295 GEKVNI-YGTTEAMNSLYMRDPRT---GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

Query: 351 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 410
           V         GY   P AT + L +DGW  T D+  + P           G + + GR  
Sbjct: 351 VVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS----------GTVRILGRVD 399

Query: 411 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKR 466
           D I+ S GEN+ P E+E    R+  + ++VVIG    R G    A +VP + E L +A  
Sbjct: 400 DMII-SGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETL-SADA 457

Query: 467 LSIVHADASELSKEK 481
           L      ASEL+  K
Sbjct: 458 LDTF-CRASELADFK 471

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 276 VSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           VS G +LP  I   + E  G+++  G G TE   +  + RP     G+ G P+   E+K+
Sbjct: 284 VSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343

Query: 335 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 394
           VD +  EV   G  G + VRG     GY+     T++      W  TGD           
Sbjct: 344 VDEDGEEV-ADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGD----------K 391

Query: 395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG 450
             R   G     GR+ D + +S G  V P E+E+A L+   + +  V+G +      +P 
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPK 450

Query: 451 AIIVP 455
           A +V 
Sbjct: 451 AFVVL 455

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 68.0 bits (167), Expect = 4e-12
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 39  VAPDIVEEIPVFSYDEIIDLGR-ESRKAFSDSNDARKHYKYET--IGSDDIATYVYTSGT 95
              ++ E++   + + ++ L   +   A  D        +     I  DD+A   Y+SGT
Sbjct: 110 TTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGT 169

Query: 96  TGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERA-CGYFIFSRGIE 152
           TG  KGVMLTH+NL+  +  L        +  D  L +LP +H+Y        +   G  
Sbjct: 170 TGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGAT 229

Query: 153 LMYTAVRNLKDDL---QRYQPHYMISVP 177
           ++     +L+  L   ++Y+  ++  VP
Sbjct: 230 VVVMPRFDLEKFLAAIEKYKVTHLPVVP 257

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 334 IVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
           +VD +T + +PA  K  G + +RG+ VM+GY KNP A ++A   +GW ++GD+G   P  
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPD- 443

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                    G + ++ R+KD I++S GEN+  LE+E        + +  V+ +   R G
Sbjct: 444 ---------GYIEIKDRSKD-IIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492

Length = 567

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 300 GYGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 353
           GYG TE SPVI        +  +C     VG PI   ++ IV  ET   + +G  G+V  
Sbjct: 331 GYGTTECSPVITINTVNSPKHESC-----VGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385

Query: 354 RGSQVMQGYFKN-PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           RG+ +  GY           L  + W  TGD+G++  H          G L L+GR
Sbjct: 386 RGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH----------GELFLKGR 431

Length = 539

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 26/53 (49%), Positives = 30/53 (56%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           D A  +YTSGTTG PKGV+LTH NL    R+L +       D  L  LP  HV
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHV 141

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG- 143
           D A  +YTSGTTG PKGV+L+H+NLL   ++L   +    GD  LS+LP +HV     G 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 144 YFIFSRGIEL-MYTAVRNLKD---DLQRYQPHYMISVPLVYETL 183
                 G  + +Y            +++Y+   +  VP +Y+ L
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
            +  DD+A  ++TSGTTG PKG MLTH+ LL       + +    GD++L+  P +HV+
Sbjct: 162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVF 220

Length = 513

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
           DD A  +Y+SGTTG PKGVML+HKN+   L Q++      P  + D  L+ LP +H Y
Sbjct: 146 DDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 35/172 (20%)

Query: 301 YGLTESSPVI------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           YG TES  V       A   P     G+VG      E++ VD +    LP G  G +  R
Sbjct: 303 YGSTESGAVTFATSEDALSHP-----GTVGKAAPGAELRFVDEDGRP-LPQGEIGEIYSR 356

Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 414
            +      + N    +  +D  G++ +GD+G++             G L L  R +D +V
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD----------GYLFLCDRKRD-MV 405

Query: 415 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAA 464
           +S G N+ P E+E        +    V G          +PD E  E LMA 
Sbjct: 406 ISGGVNIYPAEIEAVLHAVPGVHDCAVFG----------IPDAEFGEALMAV 447

Length = 509

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 301 YGLTE-SSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           YG TE +   IA     A  P       VG P     +KI+D   NEV P G  G + V 
Sbjct: 355 YGSTEVAFATIATPEDLAEAPGT-----VGRPPKGVTVKILDENGNEV-PRGVVGRIFVG 408

Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 414
                +GY       KQ    DG L++GD+G+              G+L ++GR  D IV
Sbjct: 409 NGFPFEGY--TDGRDKQI--IDGLLSSGDVGYFDED----------GLLFVDGRDDDMIV 454

Query: 415 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS--IVHA 472
            S GENV P E+E+       + +  VIG          V D+E      +RL   +V A
Sbjct: 455 -SGGENVFPAEVEDLLAGHPDVVEAAVIG----------VDDEE----FGQRLRAFVVKA 499

Query: 473 DASELSKE 480
             + L ++
Sbjct: 500 PGAALDED 507

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 300 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 359
           G G+T  +       P     GSVG  +   E++I+D + NE LP G  G V        
Sbjct: 299 GGGVTVITSEDWLAHP-----GSVGKAV-LGEVRILDEDGNE-LPPGEIGTVYFEMDGYP 351

Query: 360 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 419
             Y  +P  T  A +  GW+  GD+G++             G L L  R  D I+ S G 
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDED----------GYLYLTDRKSDMII-SGGV 400

Query: 420 NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-ADASELS 478
           N+ P E+E   +    +  + V G          VPD+E   M  +  ++V  AD ++  
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFG----------VPDEE---MGERVKAVVQPADGADAG 447

Query: 479 KEKTISLLYGELRKW 493
                  L  EL  W
Sbjct: 448 DA-----LAAELIAW 457

Length = 502

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 301 YGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           YG +E S V A       RRP      SVG P ++ +++I +    EV   G  G V V+
Sbjct: 286 YGASELSFVTALVDEESERRPN-----SVGRPFHNVQVRICNEAGEEVQK-GEIGTVYVK 339

Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 414
             Q   GY        + L+ DGW+   D+G+              G + + GR K+ I+
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEE----------GFIYIVGREKNMIL 388

Query: 415 LSTGENVEPLELEEAALRSSLIRQIVVIG 443
              G N+ P E+E        + +IVVIG
Sbjct: 389 FG-GINIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 276 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-IAAR----RPTCNVLGSVGHPINH 329
           VS G +LP  +   +YE  G+K+  G G TE   + I+A     +P     G+ G P+  
Sbjct: 267 VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKP-----GATGKPVPG 321

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
            E +IVD + NEV P G  G + VRG    + Y  +    +Q    DGW  TGDI     
Sbjct: 322 YEARIVDDQGNEV-PRGEAGRLAVRGPTGCR-YLDDER--QQEYVRDGWNVTGDIFRQDE 377

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 449
                      G      R+ D IV S G N+   E+E+A L    + +  VIG      
Sbjct: 378 D----------GYFHYVARSDDMIV-SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 450 GAIIV 454
           G I+ 
Sbjct: 427 GQIVC 431

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 324 GHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
           G P++   E+++VD   N V P G  G++  RG    +GY+K P     A D +G+  TG
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVV 441
           D+  + P           G +V+ GRAKD I    GE +   E+E   L   ++    +V
Sbjct: 413 DLVRLTPE----------GYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALV 461

Query: 442 IGQDQ---RRPGAIIVPDKEEV 460
              D+    +  A IV     +
Sbjct: 462 SMPDELLGEKSCAFIVVRDPAL 483

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 273 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 332
           +  +  G    +H   F E  GV +  GYG TE++ VIA    +    GS+G      E 
Sbjct: 297 RVALGPGVPAALHAA-FRERFGVDLLDGYGSTETNFVIAVTHGSQRP-GSMGRLAPGFEA 354

Query: 333 KIVDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
           ++VD    E LP G  G + +R  +      GYF  P  T +A   + W +TGD      
Sbjct: 355 RVVDEHDQE-LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRV---- 408

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 431
                  R   G      R KD I    GEN+   E+E+  L
Sbjct: 409 ------VRDADGWFRFVDRIKDAI-RRRGENISSFEVEQVLL 443

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 30/201 (14%)

Query: 287 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 346
           + F E  G+K+  G+G TE++  IA         GS+G P    +I I+D +       G
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSC-EVG 377

Query: 347 SKGIVKVRGSQ-----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 401
            +G + +R S      +  GY+++P  T +    DG+ +TGD  W              G
Sbjct: 378 EEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAW----------MDEDG 426

Query: 402 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--KEE 459
            L   GRA D ++ S+G  + P E+E A ++   + +  V G          VPD  + +
Sbjct: 427 YLWFVGRADD-LIKSSGYRIGPFEVESALIQHPAVLECAVTG----------VPDPIRGQ 475

Query: 460 VLMAAKRLSIVHADASELSKE 480
           V+ A   L+  +  + EL KE
Sbjct: 476 VVKATIVLTKGYEPSEELKKE 496

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
            DDIA   ++SG+TG PKGV+LTHKNLL  I ++ +     + D FLS +P  H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 41/240 (17%)

Query: 276 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           VS G  L P  I+   +A G+ ++ GYG TE++ +I          GS+G P+    + +
Sbjct: 205 VSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVL 264

Query: 335 VDAETNEVLPAGSKGIVKV--RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 392
           +D E  E+     +  + +  R   +M GY  +P  T  A    G+  TGD         
Sbjct: 265 LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKA------- 316

Query: 393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR--- 448
               R   G L   GRA D +  S+   + P E+E A L    + +  V+   D  R   
Sbjct: 317 ---YRDEDGYLWFVGRADD-VFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAV 372

Query: 449 PGAIIV------PDKE----------EVLMAAKRLSIVHADASELSKEKTISLLYGELRK 492
           P A IV      P +E          E L   KR+  +     EL   KTIS   G++R+
Sbjct: 373 PKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRI-EFVGELP--KTIS---GKIRR 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 324 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383
           G P   TEI+I+D +  E +P G  G + VR      GY     +TK     DG++ +GD
Sbjct: 368 GRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGY--TSGSTKDF--HDGFMASGD 422

Query: 384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
           +G++      GR       L + GR  + IV S GENV P+E+E+       + +  VIG
Sbjct: 423 VGYL---DENGR-------LFVVGRDDEMIV-SGGENVYPIEVEKTLATHPDVAEAAVIG 471

Query: 444 QDQRRPG----AIIVPDKE 458
            D  + G    A +V    
Sbjct: 472 VDDEQYGQRLAAFVVLKPG 490

Length = 537

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 294 GVKVQVGYGLTESSPV--IAARRPTCNVLGS------------VGHPINHTEIKIVDAET 339
             ++   YG TE+ P+  I +R     +L +            VG P++  E++I+    
Sbjct: 315 DAEILTPYGATEALPISSIESR----EILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370

Query: 340 N--------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWI 387
                      L  G  G + V G  V + Y+  P AT+ A   D  G  W   GD+G++
Sbjct: 371 APIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430

Query: 388 APHHSRGRSRRCG 400
                 GR   CG
Sbjct: 431 DAQ---GRLWFCG 440

Length = 552

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 79  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWH 136
                DD+A  +YTSGTTG PKG  LTH+NL          VP   +  ++ L+ LP +H
Sbjct: 214 PRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFH 273

Query: 137 VYERA-CGYFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYETL 183
            Y    C     S G EL+      +  + D ++++ P ++  VP +YE +
Sbjct: 274 AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKI 324

Length = 573

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.0 bits (148), Expect = 9e-10
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 279 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG--------SVGHPIN 328
           GGS   P+ I  + E  GV V   +G+TE+SPV    RP   V G        S G    
Sbjct: 306 GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA 365

Query: 329 HTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSAT----------------K 370
             E +IV+    +V+ +  +  G ++VRG+ V   Y+ +P+                   
Sbjct: 366 SLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN 423

Query: 371 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 430
                DGWL TGD+G +             G L +  RA+D I  S GE +   +LE   
Sbjct: 424 DRFTADGWLRTGDVGSVTRD----------GFLTIHDRARDVI-RSGGEWIYSAQLENYI 472

Query: 431 LRSSLIRQIVVIG-QDQR---RPGAIIV--PDKEEVLMAAKRL 467
           + +  + +  VIG  D +   RP A+ V  P  E     A+RL
Sbjct: 473 MAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515

Length = 576

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 141
           G+DD+A  +YTSGTTG  KG ML+H NLL    +L D       D  +  LP +H +   
Sbjct: 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH--- 210

Query: 142 CGYFIFSRGI 151
            G F+ +   
Sbjct: 211 -GLFVATNVA 219

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC 142
            DD+A  +YTSG+TG PKGVML+H+NL    RS+   +     D+ L++LP         
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLP--------- 51

Query: 143 GYFIFSRGIELMYTAVR 159
             F F  G+  + TA R
Sbjct: 52  --FSFDYGLSQLLTAFR 66

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)

Query: 221 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK-KIQSAIGISKAGVSGG 279
           G C+T  +   S L  L       +    L P   L  KLV + K  +A   S   V  G
Sbjct: 240 GLCVTGGENTTSLLEILTT---NAVATTCLVPT--LLSKLVSELKSANATVPSLRLVGYG 294

Query: 280 GSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEI 332
           GS  +  D+ F EA GV+    YGL+E+    A   PT +        G+VG P    ++
Sbjct: 295 GSRAIAADVRFIEATGVRTAQVYGLSETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDV 353

Query: 333 KIVDAE-----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
            +   +          P+ S G + ++    M GY+ NP  T + L  DGW+NTGD+   
Sbjct: 354 YLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDL--- 409

Query: 388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 438
                    RR  G   ++GR+ + I+   G N+ P E++  A   S +R+
Sbjct: 410 -------LERREDGFFYIKGRSSEMII-CGGVNIAPDEVDRIAEGVSGVRE 452

Length = 540

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 60.1 bits (147), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 83  SDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 129
            DD+A YV YTSG+TG PKGVM+ H+ L++ +  L +      GD+ L
Sbjct: 92  PDDLA-YVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 130
           G DD+A  +YTSG+TG PKGV++TH++L++ +  L      +  D+ L 
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQ 166

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 129
           T   DD A  +YTSG+TG PKGV++TH+N+ + +R+   I+    GD+ L
Sbjct: 95  TSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVL 144

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           DD+A   YTSGTTG PKG M TH+ +L    +             L+ LP +HV
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 286 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVL 343
           +  F   +GV +   YG TE+   +       + +  GS+G P+    I ++D +   + 
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 344 PAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 399
             G  G + +  +        GY+ +P  T + +    W  TGD+            R  
Sbjct: 282 D-GEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLV----------ERDE 329

Query: 400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--K 457
            G     GRA D I+ S G  + P ++E A L    + +  V+G          VPD  +
Sbjct: 330 DGYFWFIGRADDVII-SAGYRIGPFDVESALLEHPAVAEAAVVG----------VPDPLR 378

Query: 458 EEVLMAAKRLSIVHADASELSKE 480
            E++ A   L   +A + EL++E
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEE 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-------GDKFLSMLP 133
           I  DD+    Y+SGTTG PKGVMLTHK L   + S+   V  EN        D  L +LP
Sbjct: 176 ISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLP 232

Query: 134 PWHVY 138
            +H+Y
Sbjct: 233 MFHIY 237

Length = 537

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-R 140
             +D+A  ++TSGT   PKGV LTH NLL   R+       +  D  +S LPP+H Y   
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240

Query: 141 ACGYFIFSRGIELMYT 156
           +C  F    G+ +++ 
Sbjct: 241 SCTLFPLLSGVPVVFA 256

Length = 539

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 56.3 bits (137), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWH 136
           DD A  +YTSGTTG PKGVMLTH+NLL + + +L  +  +  GD +L   P +H
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYH 53

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-A 141
            DD+A Y +T GTTG PK    +H+N +        +     GD  L+ LP +HV     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 142 CGYFIFSRGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVY 180
            G    +RG  ++            V N    ++RY+   + +VP V 
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 23/58 (39%), Positives = 31/58 (53%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           T G DD+A   YTSGTTG PKG M TH+ ++           +      L++LP +HV
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 319 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG 377
           VL S G       + IVD ++ EVL     G +   G  +  GY++NP A+ +   E DG
Sbjct: 368 VLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDG 427

Query: 378 --WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 427
             WL TGD+G++         R   G L + GR KD +++  G N+ P ++E
Sbjct: 428 RTWLRTGDLGFL---------RD--GELFVTGRLKDMLIVR-GHNLYPQDIE 467

Length = 4334

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 291 EAIGVKVQVGYGLTESSPVIAARR---------PTCNVLGSVGHPINHTEIKIVDAETNE 341
                 V   +G+TE++  +   +         P  +  G VG      +I+IV ++   
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST-GLVGRSTG-AQIRIVGSDGLP 374

Query: 342 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 401
            LPAG+ G V +RG+ V++GY  +P+ T      DGWL TGD+G          S    G
Sbjct: 375 -LPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLG----------SLSAAG 422

Query: 402 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQ---RRPGAIIVP 455
            L + GR K+ I    GE + P  +E        + +  V G  DQ       A+IVP
Sbjct: 423 DLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP 479

Length = 534

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
            DD+A  +YTSGTTG PKGVM TH  LL ++RS  + +     D  L   P  H+
Sbjct: 92  PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 288  LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 347
             + E  G+++  GYG+TE++PVIA   P  N  G+VG  +   E ++        +  G 
Sbjct: 926  TWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPG---IDEG- 981

Query: 348  KGIVKVRGSQVMQGYFK--NPSATKQALDEDGWLNTGDI------GWIAPHHSRGRSRR 398
             G + VRG  VM GY +  NP   +     DGW +TGDI      G+I     +GR++R
Sbjct: 982  -GRLFVRGPNVMLGYLRAENPGVLEPP--ADGWYDTGDIVTIDEEGFIT---IKGRAKR 1034

Length = 1140

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHV 137
            DD A  ++TSGTTG PKGV LTHKNLL   R++   + + P    D+ L+++P +H+
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP---SDRCLNVMPLFHI 55

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 32  LWGKKSSVAPDIVE--EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATY 89
           L G K    P I       +  +D  +      R  FS             IG DD+A Y
Sbjct: 170 LPGPKRLAVPLIRRKAHARILDFDAELARQPGDR-LFSGRP----------IGPDDVAAY 218

Query: 90  VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFS 148
            +T GTTG PK    TH N +        ++    GD     LP +HV      G    +
Sbjct: 219 FHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA 278

Query: 149 RGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVYETL 183
           RG  ++            + N    ++RY+ +++  VP VY  L
Sbjct: 279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAAL 322

Length = 632

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 71  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENGD 126
            A    ++  +  DD+A   YT GTTG PKG MLTH NL   + S+YD+      A  GD
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAV-SIYDVWGKPSRATRGD 237

Query: 127 --KFLSMLPPWHVY 138
             + + +LP +H+Y
Sbjct: 238 VERVICVLPLFHIY 251

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 57/237 (24%)

Query: 279 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPV--------------IAARRPTCNVLGS 322
           GGS   P  I  F +  GV+V   +G+TE SP+              +  +R    +L  
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQR---KLLEK 357

Query: 323 VGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 380
            G  I   ++KIV  +  E LP   K  G ++VRG  V+  YF+  ++    L  DGW  
Sbjct: 358 QGRVIYGVDMKIVGDDGRE-LPWDGKAFGDLQVRGPWVIDRYFRGDAS---PLV-DGWFP 412

Query: 381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV 440
           TGD+  I             G + +  R+KD I  S GE +  +++E  A+    + +  
Sbjct: 413 TGDVATIDAD----------GFMQITDRSKDVIK-SGGEWISSIDIENVAVAHPAVAEAA 461

Query: 441 VIGQDQRRPGAIIVP----DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 493
            I                 D+  +L+  KR        +E+++E+ ++   G++ KW
Sbjct: 462 CIA----------CAHPKWDERPLLVVVKR------PGAEVTREELLAFYEGKVAKW 502

Length = 539

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 69  SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENG 125
           +  A +        +DD+A   YT GTTG  KG MLTH+NL   + Q R+L      E  
Sbjct: 192 AKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251

Query: 126 DKFLSMLPPWHVY 138
           +  ++ LP +H+Y
Sbjct: 252 EILIAPLPLYHIY 264

Length = 562

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           D A  +YTSGTTG PKGV+LTH  LL   R    ++     D  L+ LP +H+
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           D IAT ++TSGTTG PK V  T +N         + +     D +L  LP +H+
Sbjct: 111 DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHI 164

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLL---HQIRSLYDIVPAENGDKFLSMLPPWHVYE 139
            +D A  ++TSG+ G+PKGV+ +HK+LL    QI+++ D  P    D+F+S LP +H + 
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN---DRFMSALPLFHSFG 420

Query: 140 RACGYF 145
              G F
Sbjct: 421 LTVGLF 426

Length = 718

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 54.8 bits (133), Expect = 7e-08
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 50  FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 109
            ++DE++ LGR         +DA    +  T+  DD     YTSGTTG PKG  LTH+N+
Sbjct: 172 LNFDELLALGR-------AVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNI 224

Query: 110 L 110
           L
Sbjct: 225 L 225

Length = 559

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLSMLPPWHVY 138
             DD+A  ++TSG+TG PKGV+ TH     QI   R  Y I P   G+  L   P + ++
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP---GEIDLPTFPLFALF 228

Query: 139 ERACG------YFIFSR 149
             A G          +R
Sbjct: 229 GPALGMTSVIPDMDPTR 245

Length = 552

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWH 136
           +  DD+A  +YTSGT   PKG MLTH+ L+ +  S   IV  +    D  L  LP +H
Sbjct: 168 LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC--IVAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLH---QIRSLYDIVPAENGDKFL 129
           DD+A  ++TSG+TG PKGV ++H NL      +   +D+     GD F 
Sbjct: 97  DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE---GDVFS 142

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 300 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 359
            YG TE++    A R T     ++G P+ +    ++D +   ++P G+ G + + G  V 
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

Query: 360 QGYFKNPSATKQALDEDGWLN---------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 410
           +GY   P  T +    D +           TGD+                G L   GR K
Sbjct: 297 RGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLED----------GSLEFLGR-K 345

Query: 411 DTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPDKEEVLMAAKR 466
           D  V   G+ +E  E+E        +    V+        ++  A +  D       A  
Sbjct: 346 DDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADV 405

Query: 467 LSI-VHADASEL 477
               + +   E 
Sbjct: 406 DIALLRSALRER 417

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 78  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--- 134
            + +  D +A  +YTSG+TG PKGV + H+ L + +         +  D+ L++      
Sbjct: 360 PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFD 419

Query: 135 ---WHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 183
              + ++              L+      L + L+      ++ VPL+   L
Sbjct: 420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL 471

Length = 642

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
           D  AT ++TSG+TG PK V+ T  N L   R   + +     D +L  LP +HV
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVYE 139
           +D+A   YT GTTG PKGVMLTHKNL    L  ++ LY+    E  +  L +LP +HVY 
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGE--EVVLGVLPFFHVYG 263

Query: 140 RAC--------GY---FIFSRGIELMYTAVRNLKDDLQRYQPHYMISV---PLVYETLYS 185
                      GY    I    +++++ A++  K  L    P   I++   PL+ E   S
Sbjct: 264 MTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS 323

Query: 186 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI 245
            I+  I  S+     V      ++       ++ EG+ LT      S  V   ++LW + 
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGG-----KLVEGYGLTE-----SSPVTHSNFLWEKR 373

Query: 246 I---CAILWP 252
           +     + WP
Sbjct: 374 VPGSIGVPWP 383

Length = 563

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
            DD A  + TSG+TG PK V+LTH+N+L +      +      D  L+ +P  HV
Sbjct: 166 PDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 9/65 (13%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-------SLYDIVPAENGDKFLSMLP 133
           I  DD+A  +Y+SGTTG  KGV+LTH+NL+  +        S Y+   ++N   +L+ LP
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN--VYLAALP 252

Query: 134 PWHVY 138
            +H+Y
Sbjct: 253 MFHIY 257

Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 235 VALIDWLWARIICAILWP---LHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HIDLFY 290
            AL++ L A+ I  +L     L LL    +   + S     +  +SGG +LP+  +    
Sbjct: 447 AALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLL 506

Query: 291 EAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAG 346
           +   +  ++   YG TE++    +   +  +   V  G P+ +T++ I+D +    LP G
Sbjct: 507 QLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG 565

Query: 347 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVL 405
             G + + G  +  GY   P  T +         TGD+   +A            G L  
Sbjct: 566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD-----------GALEY 614

Query: 406 EGRAKDTIVLSTGENVEPLELEEAALR 432
            GR  D+ V   G  +E  E+E A   
Sbjct: 615 LGRK-DSQVKIRGFRIELGEIEAALAE 640

Length = 642

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
             D+A  +YTSG+TG PKGV+L+H+NL+   +S+   +     D+ L++LP
Sbjct: 162 DSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLP 212

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 130
            DD+A  +YTSG+TG PKGV ++H+ L++ + S+         D+ L+
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLA 139

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 319 VLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 377
           +  + G P+    E+ + DA+ N + P G  G +  RG    +GY+K+P     A D +G
Sbjct: 351 IFTTQGRPMSPDDEVWVADADGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409

Query: 378 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 432
           +  +GD+  I P           G + + GR KD I    GE +   E+E   LR
Sbjct: 410 FYCSGDLVSIDP----------DGYITVVGREKDQIN-RGGEKIAAEEIENLLLR 453

Length = 536

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 71  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 120
            A + +++E + +DD    +YTSGTTG PKG++ +H   L + R      
Sbjct: 158 KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH 207

Length = 528

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYER 140
           DD A  ++TSG+TG PKGV+ TH+     +  +RSLY I     GD+ L+  PP+ ++  
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIRE---GDRDLAAFPPFALFGP 141

Query: 141 ACG 143
           A G
Sbjct: 142 ALG 144

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 15/92 (16%)

Query: 48  PVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK 107
            V++Y+E+++             +    Y++  +  +  A   YTSGTTGNPKGV+ +H+
Sbjct: 139 NVYAYEELLE-------------EESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHR 185

Query: 108 NL-LHQIRS-LYDIVPAENGDKFLSMLPPWHV 137
           +L LH + S L D +     D  L ++P +HV
Sbjct: 186 SLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 79  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-----GDKFLSMLP 133
           E    D++AT +YTSGTTG PKGV+ T+ N             A N      D +L+ +P
Sbjct: 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVG-----SALNLGLTEDDCWLAAVP 190

Query: 134 PWHV 137
            +H+
Sbjct: 191 IFHI 194

Length = 483

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 52/234 (22%)

Query: 276 VSGGGSLPMHIDL---FYEAI--GVKVQVGYGLTESSPV--------IAARRP------- 315
           +S G   P+  DL   F   +    ++   YG TE+ PV        +A           
Sbjct: 205 LSAGA--PVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAG 262

Query: 316 TCNVLGSVGHPINHTEIKIVDA--------ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 367
            C     VGHP+   +++I+          + +  LP G  G + V G  V + Y+  P 
Sbjct: 263 VC-----VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317

Query: 368 ATKQA---LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 424
           ATK A        W   GD+G+      +GR       L   GR K   V + G  +  +
Sbjct: 318 ATKLAKISDGNRIWHRMGDLGYFDD---QGR-------LWFCGR-KAHRVETAGGTLFTV 366

Query: 425 ELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADAS 475
            +E+   R   +R+  ++G  +   + P  ++ P    +    +    + A A 
Sbjct: 367 PVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAK 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-----ENGDKFLSMLPPW 135
           I  DDIA   YT GTTG  KG MLTH+NL+  ++  +  +       E  +  ++ LP +
Sbjct: 205 IEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLY 264

Query: 136 HVYERACGYFIF 147
           H++       +F
Sbjct: 265 HIFALTANGLVF 276

Length = 560

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 51.3 bits (124), Expect = 7e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 300 GYGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
            YG TE++  +       + L      +G PI +T + ++D +   V P G  G + + G
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPV-PVGVPGELYIGG 298

Query: 356 SQVMQGYFKNPSATKQALDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           + V +GY   P  T +    D +         TGD+    P           G L   GR
Sbjct: 299 AGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPD----------GNLEFLGR 348

Query: 409 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVL 461
           A D + +  G  +E  E+E A L    +R+ VV+ ++         A +VP     L
Sbjct: 349 ADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL 404

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 20/116 (17%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-------QIRSLYDIVPAENGDKFLSML 132
            + +DD A  ++TSGTT  PKGV++TH NL         Q     D       D +L+++
Sbjct: 169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDD-------DVYLTVM 221

Query: 133 PPWHV-YERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 183
           P +H+  +       FS G   +    Y+A R     + +Y+      +P++  TL
Sbjct: 222 PAFHIDCQCTAAMAAFSAGATFVLLEKYSA-RAFWGQVCKYRATITECIPMMIRTL 276

Length = 517

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           DD A  ++TSG+ G PKGV+L+H+NLL     +   +     DK  + LP +H
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Length = 1140

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 73  RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFL 129
           R  Y    +  +D+A   YT GTTG  KG MLTH+N+   L Q ++ Y  +     +  +
Sbjct: 195 RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254

Query: 130 SMLPPWHVYERA--CGYFIFSRGIELMYTAVRNLK---DDLQRYQ 169
           + LP +H++     C  FI   G  L+ T  R++     +L++Y 
Sbjct: 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYP 299

Length = 560

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)

Query: 78  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK--FLSMLPPW 135
           +  +G D +A Y++TSG+TG PK V+ TH+ L      +    P    +    +  L PW
Sbjct: 158 FAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWL-PW 216

Query: 136 -HVYERACGYFIFSRGIE---------------LMYTAVRNLKDDLQRYQPHYMISVPLV 179
            H +    G   F+  +                L    +RNL++      P    +VP  
Sbjct: 217 NHTFG---GNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLRE----VSPTVYFNVPKG 269

Query: 180 YETL 183
           +E L
Sbjct: 270 FEML 273

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 276 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           V+GG  L P  ++ +    G+ +  GYG TE+  + A  +      GS+G      +++I
Sbjct: 297 VTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQI 356

Query: 335 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
           +D   N VLP G++G + +R            Y  NP  T   +  D ++ TGD      
Sbjct: 357 IDDNGN-VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGD------ 408

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRR 448
              RG      G     GRA D ++ S+G  + P E+E A +   +++   VV   D  R
Sbjct: 409 ---RGIMDE-DGYFWFVGRADD-VINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 449 PGAIIVPDKEEVLMAAKRLSIVHADASELSKE 480
            G ++   K  V++A + LS    D  +L+KE
Sbjct: 464 -GEVV---KAFVVLAPQFLS---HDPEQLTKE 488

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 72  ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-------RSLYDIVPAEN 124
           AR+ +K   +G DD+A   YT GTTG  KG  L H+N++  +       +  ++  P  +
Sbjct: 192 ARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251

Query: 125 GDKFLSMLPPWHVYERACGYFIFSR--GIELMYTAVRNLK---DDLQRYQPHYMISVPLV 179
              F+  LP +H++       +  R  G  ++    R++     +L++YQ H   +V   
Sbjct: 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV--- 308

Query: 180 YETLYSGI 187
             TLY+ +
Sbjct: 309 -NTLYNAL 315

Length = 557

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 300 GYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
            YG TE++    A               +G P+ +T + ++D +   V P G  G + + 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV-PVGVVGELYIG 325

Query: 355 GSQVMQGYFKNPSATKQA-LDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLE 406
           G  V +GY   P  T +  + +            TGD+                G L   
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLV----------RYLPDGNLEFL 375

Query: 407 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 441
           GR  D + +  G  +E  E+E A LR   +R+ VV
Sbjct: 376 GRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 44/188 (23%)

Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKG- 349
           G +V+ GYG +E + VI  R P     GS+G       + I + ET          + G 
Sbjct: 288 GCQVEDGYGSSEGA-VIVVREPGTPP-GSIGRGAP--GVAIYNPETLTECAVARFDAHGA 343

Query: 350 ----------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 399
                     +V   G+   +GY+ NP AT + +   G   +GD+ +          R  
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAY----------RDA 392

Query: 400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 459
            G +   GR  D + +  GEN+    +E   LR   I ++ V            VPD E 
Sbjct: 393 DGWIYFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA----------VPD-ER 440

Query: 460 V---LMAA 464
           V   +MAA
Sbjct: 441 VGDQVMAA 448

Length = 540

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 38  SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTG 97
              P  +  IPV + DE+ D+         D            +  DD    ++TSGTTG
Sbjct: 107 EELPLEILGIPVITLDELKDIFATGNPYDFDH----------AVKGDDNYYIIFTSGTTG 156

Query: 98  NPKGVMLTHKNLL 110
            PKGV ++H NL+
Sbjct: 157 KPKGVQISHDNLV 169

Length = 503

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
           + +DD+A  +YTSG+TG PKGV + H+ ++
Sbjct: 124 VDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 78  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPP 134
           +  +G D IA +++TSG+TG PK V+ TH+ L      +   +    AE     +  L P
Sbjct: 203 HAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP-FLAEEPPVLVDWL-P 260

Query: 135 WH 136
           W+
Sbjct: 261 WN 262

Length = 614

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 304 TESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLP---AGSKGIVKVRGS--Q 357
           TE+  ++ A  P   V  GS+G P+   E  +++ + + + P    G  G + ++     
Sbjct: 242 TETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS 301

Query: 358 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 417
           + +GY  N      +   DGW  TGD+ +          R   G     GRA D I  + 
Sbjct: 302 MFRGYLGNEERYASSF-VDGWYLTGDLAY----------RDEDGYFWFVGRADDVI-KTA 349

Query: 418 GENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 454
           G  V P E+E A +    + +  VIG+     G I+ 
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVK 386

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)

Query: 301 YGLTE------SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           YG TE       + V AA  P      ++G PI +T++ ++D +  + +P G  G + + 
Sbjct: 237 YGPTETTIWSTCARVTAADGP-----VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIG 290

Query: 355 GSQVMQGYFKNPSATKQAL-----DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 407
           G  V +GY   P  T +       D+ G     TGD           R  R  G L   G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGD---------LVR-WRPDGRLEYLG 340

Query: 408 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 447
           RA D + +  G  +E  E+E A      +   VV+ +++ 
Sbjct: 341 RADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEG 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 81  IGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRS 115
           +  DD+A YV +TSG+TG PKGVM+TH+  ++ I  
Sbjct: 123 VDPDDLA-YVIFTSGSTGEPKGVMITHRAAVNTILD 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 7   VENPEFFNRIAETLCSKAAMRFIILLWGKK-SSVAPDIVEEIPVFSYDEIIDLGRESRKA 65
           V +P    ++ E L     +R ++ +      S A  + E I V+SY+ ++D GR +   
Sbjct: 116 VADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRST--- 171

Query: 66  FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAE 123
                     Y +  +     A   Y++GTTG PKGV+ +H++L  Q  SL   D +   
Sbjct: 172 ---------VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVT 222

Query: 124 NGDKFLSMLPPWHV 137
           +G+ FL  +P +HV
Sbjct: 223 HGESFLCCVPIYHV 236

Length = 576

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 301 YGLTES------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           YGLTE+       P    RRP      S+G  I + E+ ++  + +E  P     +V  R
Sbjct: 309 YGLTEAFRSTYLPPEEVDRRPD-----SIGKAIPNAEVLVLREDGSECAPGEEGELVH-R 362

Query: 355 GSQVMQGYFKNPSATKQ------------ALDEDG-WLNTGDIGWIAPHHSRGRSRRCGG 401
           G+ V  GY+ +P  T +             L E   W  +GD             R   G
Sbjct: 363 GALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR----------RDEEG 410

Query: 402 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 443
            L   GR +D ++ ++G  V P E+EE A  + L+ + V  G
Sbjct: 411 FLYFVGR-RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 283 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 342
           P  I  F    G  V  G+G TE   V   R P     G++G       + IVD +T   
Sbjct: 279 PGDIARFARRFGCVVVDGFGSTEGG-VAITRTPDTPP-GALGPLPP--GVAIVDPDTGTE 334

Query: 343 LPAGSKG-------------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
            P                  +V   G    +GY+ +P A  + +   G   +GD+ +   
Sbjct: 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDA 393

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 449
                      G     GR  D + +  GEN+    +E   LR     ++ V        
Sbjct: 394 D----------GYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA------ 436

Query: 450 GAIIVPDKE--EVLMAA 464
               VPD    + +MAA
Sbjct: 437 ----VPDPVVGDQVMAA 449

Length = 529

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 48.7 bits (117), Expect = 6e-06
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 37  SSVAPDIVEEIPVFSYDEI--------IDLGRESRKAFSDSNDARKHYKYETIGSDDIAT 88
                D+     ++              DL   +  A + +  +R       + + D A 
Sbjct: 149 EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR-----SGVTAKDTAF 203

Query: 89  YVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           Y+YTSGTTG PK  +++H   L  +     ++     D     LP +H
Sbjct: 204 YIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYH 251

Length = 600

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 301 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
           YG TE++  + + + T  +L       +G       + I+D E  E LP G KG + + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVG 349

Query: 356 SQVMQGYFKNPSATKQALDEDGWL---NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 412
             V +GY  NP  T +A           TGD G I             G L  +GR    
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-----------DGQLFYQGRLDFQ 398

Query: 413 IVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           I L  G  +E  ++E    +SS I   VV+
Sbjct: 399 IKLH-GYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 114
           G DD+   +YTSGTTG PKGVM T   L+  I 
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV 227

Length = 547

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 46  EIPVFSYDEIIDLGRESRKAFSDSND-ARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 104
            +PV    E    G  + K   ++ D A      E I   D+    ++SGTTG  KGVML
Sbjct: 145 GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVML 204

Query: 105 THKNLLHQI-RSLYDIVPAENGD-KFLSMLPPWHVY 138
           TH+NL+  +  SL+ + P   G    L ++P +H+Y
Sbjct: 205 THRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIY 240

Length = 546

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLS------ 130
           T GSDD A  +YTSGTTG PKG +  H+ LL  +      +++ P   GD F +      
Sbjct: 84  TDGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP-RPGDVFWTPADWAW 142

Query: 131 -------MLPPWH 136
                  +LP  +
Sbjct: 143 IGGLLDVLLPALY 155

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYERA 141
           DD+A ++Y+SG+TG PKGV+  H ++L      Y  +++     D   S    +  Y   
Sbjct: 161 DDMAFWLYSSGSTGRPKGVVHLHHDMLVTAE-AYAKNVLGITEDDVVFSAAKLFFAYGLG 219

Query: 142 CG-YFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGI 187
            G YF  S G   +    R   D     ++RY+P     VP    TLY+ +
Sbjct: 220 NGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVP----TLYAAM 266

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 283 PMHIDLFYEAI-GVKVQVGYGLTES-----SPVIAARRPTCNVLGSV--GHPINHTEIKI 334
           P H+     A  G+++  GYG TE+       VI           S+  G PI +T + I
Sbjct: 254 PAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDE---AADSIPIGRPIPNTTVYI 310

Query: 335 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN------TGDIGWIA 388
           +D E   V P G  G + V G  +  GY   P  T +    D +        TGD     
Sbjct: 311 LDEEGQPV-PIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD----- 364

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQ 444
                 R  R  G +   GR  D  V   G  +E  E+E+A L+   +R+  V+      
Sbjct: 365 ----LAR-WRPDGNIEFLGRI-DRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAA 418

Query: 445 DQRRPGAIIVPD 456
             +R  A +V  
Sbjct: 419 GDKRLVAYVVAR 430

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           D IA   YTSG+T  P GV +TH NL   +  + D +  + GD+ +S LP +H
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFH 232

Length = 631

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 278 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIV 335
           GGG  P  +     A G+ V   YG++E          T    G V  G P++   +++ 
Sbjct: 159 GGGPAPAPVLDAAAAAGINVVRTYGMSE----------TSG--GCVYDGVPLDGVRVRVE 206

Query: 336 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 395
           D            G + + G  + +GY +NP        E GW  T D+G +        
Sbjct: 207 D------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGAL---DD--- 246

Query: 396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 454
                GVL + GRA D  + + G  V P  +E A      +    V G    R G  +V
Sbjct: 247 -----GVLTVLGRA-DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVV 299

Length = 358

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 380
           ++IVD +T    PAG+ G + V G  V  GY++ P  T++              E  WL 
Sbjct: 381 VRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440

Query: 381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 414
           TGD+G+I+            G L + GR KD ++
Sbjct: 441 TGDLGFIS-----------EGELFIVGRIKDLLI 463

Length = 578

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKN 108
            D  +  YTSGTTGNPKGV+ TH+ 
Sbjct: 167 WDPISLNYTSGTTGNPKGVVYTHRG 191

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLP 133
           D +A   YT GTTG PKG   T +++++   + Y + V       FLS LP
Sbjct: 209 DALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259

Length = 567

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 25/69 (36%), Positives = 30/69 (43%)

Query: 68  DSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK 127
           D+ DA           DD+   +YTSGTTG PKGVM T   L   I    + +    GD 
Sbjct: 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDV 238

Query: 128 FLSMLPPWH 136
            L   P  H
Sbjct: 239 ILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 72  ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK-NLLHQIRSLY-DIVPAENGDKFL 129
           A   + ++T   +  A   YTSGTTG+PKGV+ +H+ N+LH + +   D +     D  L
Sbjct: 165 ADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTML 224

Query: 130 SMLPPWH 136
            ++P +H
Sbjct: 225 PVVPLFH 231

Length = 542

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)

Query: 288 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 347
           L+ +  G+++  GYG+TE +PV++   P     G+VG  +   + +++      V     
Sbjct: 498 LWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLL-----SVPGIEQ 552

Query: 348 KGIVKVRGSQVMQGYFK--------NPSA-TKQALDEDGWLNTGDIGWIAPHHSRGRSRR 398
            G ++++G  +M GY +         P+A   +   E GW +TGDI              
Sbjct: 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ-------- 604

Query: 399 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ-IVVIGQDQRRPGAIIV--P 455
             G + ++GRAK    ++ GE V    +E+ AL  S  +Q    I  D  +  A+++   
Sbjct: 605 --GFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT 661

Query: 456 DKE---EVLMAAKR 466
           D E   E L    R
Sbjct: 662 DSELTREKLQQYAR 675

Length = 718

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-DKFLSMLPPWH 136
            G DD+A    TSG+TG+PK V +TH NL     +++     +   D  +S LP +H
Sbjct: 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 112
             DIA   YT GTTG PKGVM TH+++   
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATM 196

Length = 524

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 321 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-WL 379
           G+VG  +   ++ I+D +  E LP G  G +   G +  + Y  +P+ T +A   DG W 
Sbjct: 328 GTVGRAM-FGDLHILDDDGAE-LPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 427
             GDIG++             G L L  RA   I +S G N+ P E E
Sbjct: 385 TVGDIGYVDE----------DGYLYLTDRAAFMI-ISGGVNIYPQEAE 421

Length = 511

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLL 110
           DD     YTSGTTG PKG  L+H N+L
Sbjct: 201 DDPINIQYTSGTTGFPKGATLSHHNIL 227

Length = 558

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKF-------L 129
            +G DDIA   YT GTTG  KG MLTH NL   + Q+R+    +  +            +
Sbjct: 203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMI 262

Query: 130 SMLPPWHVY 138
           + LP +H+Y
Sbjct: 263 APLPLYHIY 271

Length = 562

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 301 YGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           YG TE++  I     TC   G     +G PI +    I+DA    V P G  G + + G 
Sbjct: 803 YGPTEAA--IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-PVGVLGELYLAGR 859

Query: 357 QVMQGYFKNPSATKQALDEDGWLN------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 410
            + +GY   P  T +      ++       TGD           R R   GV+   GR  
Sbjct: 860 GLARGYHGRPGLTAERFVPSPFVAGERMYRTGD---------LARYRA-DGVIEYAGRID 909

Query: 411 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE-----EVLMAAK 465
             + L  G  +E  E+E   L    +R+  V+  D ++    +V + E     E L A  
Sbjct: 910 HQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHL 968

Query: 466 RLSI 469
             S+
Sbjct: 969 AASL 972

Length = 5163

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 301 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
           YG TE++  + +   T  +L       +G+    + + I+D E    LP G +G + + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 356 SQVMQGYFKNPSATKQAL-DEDGW--LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 412
             V +GY  NP  T +A    DG    +TGD G++             G+L  +GR    
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-----------DGLLFYQGRIDFQ 400

Query: 413 IVLSTGENVEPLELEE--AALR-SSLIRQIVVI 442
           I L    N   +ELEE    LR SS +   VV+
Sbjct: 401 IKL----NGYRIELEEIEQNLRQSSYVESAVVV 429

Length = 503

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-GDKFLSMLPPWHVYE 139
             +DDIA ++YTSGTTG PKGVM  H++          +  AE    + L + P   ++ 
Sbjct: 88  TEADDIAYWLYTSGTTGKPKGVMHRHRDP---------LTFAEAFARELLGLQPGDRIFS 138

Query: 140 RACGYFIFSRGIELMY------TAVRN--------LKDDLQRYQPHYMISVPLVYETLYS 185
            +  +F +  G  L++      +AV          + D L R++P  +  VP     LY 
Sbjct: 139 SSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP----ALYR 194

Query: 186 GIQKQIFTSSAARRVV 201
            + +    S+   R V
Sbjct: 195 ALLESGAGSAPLFRSV 210

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 91  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
           YTSG+TG PKGV L+   L    +SL + +     ++ L +LP
Sbjct: 119 YTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLLP 161

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 133
           +  DD    +YTSG+TGNPKGV ++H NL+     +    P   G +FL+  P
Sbjct: 138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 41/166 (24%)

Query: 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ---------- 371
           S G         IVD +T   LP G  G + + G  + +GY+  P  T++          
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 372 --------ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 423
                   A D+  WL TGD+G               G L + GR  D IV+  G N  P
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVID-GRNHYP 510

Query: 424 LELE-EAALRSSLIRQIVVIGQDQRRPGAIIVP--DKEEVLMAAKR 466
            ++E   A  S ++R+  V         A  VP  D E +++ A+R
Sbjct: 511 QDIEATVAEASPMVRRGYV--------TAFTVPAEDNERLVIVAER 548

Length = 612

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 43   IVEEIPVFSYDEIIDLGRESRKAFSDSN-DARKHYKYETIGSDDIATYVYTSGTTGNPKG 101
            ++E++P  + D  + L R     +S++N   R          +++A  +YTSG+TG PKG
Sbjct: 3202 LLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM-------GENLAYVIYTSGSTGKPKG 3254

Query: 102  VMLTH---KNLLHQIRSLYDI 119
            V + H    N L  I   Y++
Sbjct: 3255 VGVRHGALANHLCWIAEAYEL 3275

Length = 3956

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 144
           D+A +  + GTTG PK +  TH + L+  R+  +    + G  +L++LP  H +  +   
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPG 199

Query: 145 FI 146
            +
Sbjct: 200 LL 201

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 92  TSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 151
           TSGTTG PKG      + L  +  L   VP   G+  L   P +H    A G+   +  +
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFH----ATGWAHLTLAM 270

Query: 152 ELMYTAV-------RNLKDDLQRYQPHYMISVP 177
            L  T V           +D+ +++   ++ VP
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVP 303

Length = 549

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 45  EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 104
              P+  Y+ ++        A          Y +     +  ++  YTSGTTGNPKG + 
Sbjct: 150 GSTPLLCYETLVG-------AQDG------DYDWPRFDENQASSLCYTSGTTGNPKGALY 196

Query: 105 THKN-LLHQIRS-LYDIVPAENGDKFLSMLPPWHV 137
           +H++ +LH   + L D +     D  L ++P +HV
Sbjct: 197 SHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231

Length = 539

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAENGDKFLSMLPP 134
                A   YTSG+T  P GVM++H+N+     Q+ S Y      VP  +    +S LP 
Sbjct: 158 DLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT-TVVSWLPF 216

Query: 135 WH 136
           +H
Sbjct: 217 YH 218

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 273  KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGHPINHT 330
            K  V GG +LP  +     A G+ +   YG TE++  +   +       +  +G PI + 
Sbjct: 3314 KRIVCGGEALPADLQQQVFA-GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR 3372

Query: 331  EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW------LNTGDI 384
               I+D     V P G+ G + + G  + +GY   P  T +    D +        TGD+
Sbjct: 3373 ACYILDGSLEPV-PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431

Query: 385  GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 444
                         R  GV+   GR  D  V   G  +E  E+E   L    +R+ VV+  
Sbjct: 3432 A----------RYRADGVIEYIGRV-DHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480

Query: 445  DQRRPGAIIVPDKEE 459
            D R+  A +VP+ E 
Sbjct: 3481 DGRQLVAYVVPEDEA 3495

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
           +  D++A  +YTSG+TG PKGV ++H  L 
Sbjct: 653 LDPDNLAYVIYTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 61  ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 120
           E   AF  S DA +     +I  + ++  ++TSGT+G PKGVML+ +NL     +   + 
Sbjct: 112 EDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG 171

Query: 121 PAENGDKFLSMLPPWHV 137
             +    FL   P +H+
Sbjct: 172 RVDAHSSFLCDAPMFHI 188

Length = 488

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 112
           I +D  A  +YTSGTTG PKG +LTH NL  Q
Sbjct: 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQ 202

Length = 542

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
            +DD+A   +TSGTTG PKG M  H+++L
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDIL 173

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNL 109
           DD+A  V TSGTTG PKG MLT   L
Sbjct: 35  DDVALVVATSGTTGTPKGAMLTAAAL 60

Length = 358

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLH 111
           DD A ++Y+SG+TG PKGV+ TH N   
Sbjct: 161 DDPAFWLYSSGSTGMPKGVVHTHSNPYW 188

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 114
            DD+A  +YTSG+TG PKGV + H+N    ++
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQ 135

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 301 YGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 357
           YG +E    S              S+G P+  T+  ++DA    V P G  G + + G+ 
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPV-PVGVPGELYIGGAG 303

Query: 358 VMQGYFKNPSATKQALDEDGWLN--------TGDIGWIAPHHSRGRSRRCGGVLVLEGRA 409
           V +GY   P  T +    + +          TGD+            RR  G L   GR 
Sbjct: 304 VARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLV----------RRRADGQLEYLGRI 353

Query: 410 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPD 456
            D + +  G  +E  E+E A      + + VV+        R+  A IV D
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ---IRSLYDIVPAENGDKFLSMLPPWH 136
            +  DDIA   YTSG+T  PKGV ++H NL+     IR  + I    + D  +S LP +H
Sbjct: 162 ALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPD-DVIVSWLPLYH 220

Length = 4334

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 81   IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLS 130
            +   ++A  +YTSG+TG PKG    H  L   L   +  Y +  A+   +F S
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTS 1767

Length = 3956

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 276 VSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAA--RRPTCNVLGS-------VGH 325
           +  GGS      +        +V+ GYGLTE+SPV+     +     L            
Sbjct: 275 LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 334

Query: 326 PINH--TEIKIVDAETNEVLPAGSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
            +      +++ D E   V P   K +  V+++G  +  GY+ N  AT+ AL  DG+  T
Sbjct: 335 GLPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 393

Query: 382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 427
           GDI                G + ++ R KD I    GE +  ++LE
Sbjct: 394 GDIAVWDEE----------GYVEIKDRLKDLIKSG-GEWISSVDLE 428

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTH 106
           DD   + +TSGTTG PK  +LTH
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
            DD     +TSGTTG PKGV ++H  L+ Q  +   IV     D +L   P  H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 225

Length = 563

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 84   DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLS 130
            +++A  +YTSG+TG PKGV ++H  L+   ++    Y++ PA+   +F+S
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMS 2195

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           DD A  +YTSGTTG PKG  ++ +  L     L   +  +  D+  + +P +H
Sbjct: 87  DDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 137
             A Y+YTSGTTG PK   ++H  +L Q   +  +      D   + LP +H 
Sbjct: 143 STALYIYTSGTTGLPKAARISHLRVL-QCSGMLSLCGVTADDVVYTTLPLYHS 194

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 333 KIVDAETNEVLPA-GSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIA 388
            ++D + +EV P  G  G +   G  V  GY+K+P  T +   E DG  +   GD   + 
Sbjct: 199 VVLDEDGSEVPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVE 257

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                       G + L GR    I  + GE V P E+EEA      +   +V+G    R
Sbjct: 258 A----------DGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 449 PGAIIV----------PDKEEVL 461
            G  +V           D  E+ 
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELR 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 71  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT 105
            AR  ++Y     D  A  VYTSGTTG PKGV+L+
Sbjct: 115 HARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLS 149

Length = 471

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ-----------------ALDED 376
           IVD ET   LP G  G + + G+ +  GY+  P  T                   A D+ 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 377 GWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 434
            W+ TGD G +              G L + GR KD +++  G N  P +LE  A  ++
Sbjct: 464 LWVRTGDYGVYF------------DGELYITGRVKDLVIID-GRNHYPQDLEYTAQEAT 509

Length = 631

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 33/167 (19%)

Query: 321 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDGW 378
           GSVG  +    + I D + NE LPAG  G V     ++   Y  +P  T  A       W
Sbjct: 323 GSVGRSVLGD-LHICDDDGNE-LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW 380

Query: 379 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 438
              GD+G +             G L L  R K  +++S G N+ P E E A      +  
Sbjct: 381 TTVGDLGSVDED----------GYLYLADR-KSFMIISGGVNIYPQETENALTMHPAVHD 429

Query: 439 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA-----SELSKE 480
           + VIG          VPD E   M  +  +++          EL++E
Sbjct: 430 VAVIG----------VPDPE---MGEQVKAVIQLVEGIRGSDELARE 463

Length = 501

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 136
               DDIA   Y+SG+T  P+GV++TH+ L+  +R++ +D +    GD+ +S LP +H
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 82   GSDDIATYVYTSGTTGNPKGVMLTHKNLL 110
            G D++A  +YTSG+TG PKGVM+  + +L
Sbjct: 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGML 3895

Length = 4334

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 324 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WL 379
           G P+ + +  ++D +  +  P    G + + G  V  GY+ +P  T +       G    
Sbjct: 303 GKPLPNQKFYVLDEDGRDC-PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLY 361

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLE--GRAKDTIVLSTGENVEPLELEEAALRSSLIR 437
            TGD          GR R  G    +E  GR  D  V   G  VE  E+E A  R   ++
Sbjct: 362 RTGD---------LGRYRPDG---TIEFLGR-ADHQVKIRGYRVELGEIEAALARHPGVQ 408

Query: 438 QIVVIGQDQRRP---GAIIVPDKEEVLMAA 464
           + VV+           A +V +    + AA
Sbjct: 409 RAVVVVVGDGGAKALAAFVVAEDGAAVDAA 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLL----HQIRSLYDIVPAENGDKFL------SMLP 133
           DD A  +YTSGTTG PKG + TH          I   +D+ P   GD+ L       M+ 
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP---GDRLLWITDMGWMMG 156

Query: 134 PWHVY 138
           PW V 
Sbjct: 157 PWLVL 161

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 321 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 380
           G++G  +   EI++V A        G +G + VRG  + +GY+  P +    +  +GWL+
Sbjct: 313 GTLGRVLPPYEIRVV-APDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP---VANEGWLD 368

Query: 381 TGDIGWIAPHHSRGRSRRC---GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 437
           T             R R C    G +    RA DT V+  G NV+P E+E   +    + 
Sbjct: 369 T-------------RDRVCIDSDGWVTYRCRADDTEVIG-GVNVDPREVERLIIEDEAVA 414

Query: 438 QIVVIG 443
           +  V+ 
Sbjct: 415 EAAVVA 420

Length = 705

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLL 110
           D A Y+YTSGTTG PK  +++H+  L
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWL 107

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 66   FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK---NLLHQIRSLYDIVPA 122
            F   + A +      +  D++A  +YTSG+TG PKGV ++H    N LH     Y++ P 
Sbjct: 4682 FPAHDPAVR------LHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD 4735

Query: 123  E 123
            +
Sbjct: 4736 D 4736

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 300  GYGLTESSPVIAARR-PTCNVLGS----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
            GYG TE++  +   +    +  G+    +G P+ +    ++D + N  LP G  G + + 
Sbjct: 4841 GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLN-PLPVGVAGELYLG 4899

Query: 355  GSQVMQGYFKNPSATKQ-----ALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 407
            G  V +GY + P+ T +          G     TGD+       +R R+    GV+   G
Sbjct: 4900 GEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDL-------ARYRA---DGVIDYLG 4949

Query: 408  RAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQD---QRRPGAIIVPDKEEVLMA 463
            R  D  V   G  +E  E+ EA LR    +R+ VVI Q+    ++    +VP    +  A
Sbjct: 4950 RV-DHQVKIRGFRIELGEI-EARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADA 5007

Query: 464  AKR 466
             + 
Sbjct: 5008 DEA 5010

Length = 5163

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 308 PVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 367
            V +  +P+   L   G  +   ++ IV+ +T  +      G + V  S     Y+    
Sbjct: 340 RVDSEDKPSSLPLQDSGMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTG 399

Query: 368 ATKQALD-----------EDGWLNTGDIGWIAP-HHSRGRSRRCGGVLVLEGRAKDTIVL 415
            TK   +           E+ ++ TG +G++ P  HS G     G + V+ G   +T+ +
Sbjct: 400 MTKNTFEVFPNSSSDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVV-GSIDETLEV 458

Query: 416 STGENVEPLELEEAALRS 433
           S G    P ++E   LR 
Sbjct: 459 S-GLRHNPDDIEATVLRV 475

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	100.0
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.97
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.97
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.83
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.79
PRK09188	365	serine/threonine protein kinase; Provisional	99.64
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.54
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.18
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.82
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.74
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.58
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.4
PLN02247	606	indole-3-acetic acid-amido synthetase	98.13
PLN02249	597	indole-3-acetic acid-amido synthetase	98.1
PLN02620	612	indole-3-acetic acid-amido synthetase	97.89
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	91.74

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.5e-76  Score=595.00  Aligned_cols=466  Identities=33%  Similarity=0.503  Sum_probs=397.5

Q ss_pred             cEEEEEcChhhHHHHHHHhcc--CCCceEEEEEcCCCCCCCCC-ccCCccceeHHHHHHhchhhhcccCCcchhhccccc
Q 010017            2 CVALAVENPEFFNRIAETLCS--KAAMRFIILLWGKKSSVAPD-IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKY   78 (520)
Q Consensus         2 ~~~~vv~~~~~~~~~~~~~~~--~~~l~~ii~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   78 (520)
                      +.++||+++++++.+.+....  +|+||.||++++..+..... ...++.+++|+|+++.|.......          + 
T Consensus       181 ~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~----------~-  249 (691)
T KOG1256|consen  181 ISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKP----------R-  249 (691)
T ss_pred             eeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCC----------C-
Confidence            467888889999999998774  89999999998765443322 234678999999999997433221          1 


Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hc---CCCCCcEEEEEcChhhHHHHHHhhhhhhcCee
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IV---PAENGDKFLSMLPPWHVYERACGYFIFSRGIE  152 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~---~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~  152 (520)
                      .++.|+|+|.|+|||||||+|||||+||+|+++.+..+..   ..   .....|+++|+|||+|++.+.+....+..|+.
T Consensus       250 ~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~  329 (691)
T KOG1256|consen  250 VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAK  329 (691)
T ss_pred             CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccE
Confidence            4678999999999999999999999999999986553221   11   12346999999999999999999888899999


Q ss_pred             EEec--chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          153 LMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       153 ~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                      +.+.  ++..+.++|++.+||++.+||++|+++++.+++...+++.+++.+..++.......    +...|...+     
T Consensus       330 IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~----~~~~G~~~~-----  400 (691)
T KOG1256|consen  330 IGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEH----RLMKGKSRS-----  400 (691)
T ss_pred             EEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH----HhhCCCCcc-----
Confidence            9985  78889999999999999999999999999999999998888887777766654421    122222110     


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEecCCCCChhHHHHHHHh-CCeeeeccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSP  308 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~~~~gg~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~  308 (520)
                                            ...++++++|++++..||. .|.+++|++|++.++..|++.. |++|+++||+|||++
T Consensus       401 ----------------------~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~  458 (691)
T KOG1256|consen  401 ----------------------RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSA  458 (691)
T ss_pred             ----------------------cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCC
Confidence                                  2458899999999999985 5999999999999999988865 799999999999986


Q ss_pred             ceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          309 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       309 ~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      .++...+.+...+++|.|+|+++++++|....+.-+.|..||||+||++||+|||+||++|+++|+.|||+||||+|+++
T Consensus       459 g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~  538 (691)
T KOG1256|consen  459 GTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWD  538 (691)
T ss_pred             ceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeEC
Confidence            66666665668899999999999999998777777778899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHHHHHHHHHc
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~  467 (520)
                      +          +|.|+|+||+|+++|+++||+|.|+.||++..+.+.|.+.+|.|.+ +.+++|+|+|+++.+++|+.++
T Consensus       539 p----------~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~  608 (691)
T KOG1256|consen  539 P----------NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKD  608 (691)
T ss_pred             C----------CccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHc
Confidence            9          8999999999999999999999999999999999999999999987 6789999999999999999987


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhcc----CCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ++..+...-+...++++.+..+|-++.+.    ..++|++|.|.+++||++||+||
T Consensus       609 ~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~Fsiengllt  664 (691)
T KOG1256|consen  609 GVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLT  664 (691)
T ss_pred             cCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccc
Confidence            77755444578888899988888888763    34999999999999999999987

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=7.5e-72  Score=574.01  Aligned_cols=392  Identities=38%  Similarity=0.620  Sum_probs=347.2

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC-CCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEe-
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY-  155 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~-  155 (520)
                      .+..++|+|.|+|||||||.|||||+||+|+++++..+...++ ..++|+++++||++|++++++ ....+..|.+..+ 
T Consensus       186 ~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~  265 (613)
T COG1022         186 APPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK  265 (613)
T ss_pred             CCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec
Confidence            3568999999999999999999999999999999999999987 899999999999999999997 4445666666655 


Q ss_pred             cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      .++++++++++++|||++++||++|+.+.+.+.+++...+..++.+..++...........  ..+.             
T Consensus       266 ~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~--~~~~-------------  330 (613)
T COG1022         266 EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRA--LLGG-------------  330 (613)
T ss_pred             CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh--hccc-------------
Confidence            5899999999999999999999999999999999999988888878877776643221111  1110             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                   ...+....+++++|+++++.+| .+|.+++||+++++++..|++..|++++++||+||+++.+++++
T Consensus       331 -------------~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~  397 (613)
T COG1022         331 -------------GPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNP  397 (613)
T ss_pred             -------------CCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEcc
Confidence                         0111223489999999999998 56999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      +.+...+++|+|+|+++++|+|           .|||+||||+||+||||+|++|+++|++||||+|||+|.+++     
T Consensus       398 ~~~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~-----  461 (613)
T COG1022         398 PDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE-----  461 (613)
T ss_pred             ccCcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC-----
Confidence            9999999999999999999998           399999999999999999999999999999999999999999     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHHHHHcCCCc-CC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-AD  473 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~-~~  473 (520)
                           +|+|+|+||+||+||+++|+||.|+.||+.+.++|.|.+++|+|..+++++|+|+|+.+.+..|+..++... .+
T Consensus       462 -----~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~  536 (613)
T COG1022         462 -----DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISAS  536 (613)
T ss_pred             -----CCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcceEEEEeCCHHHHHHHHHhccccccCC
Confidence                 899999999999999999999999999999999999999999998899999999999999999999887543 22


Q ss_pred             c-cccChHHHHHHHHHHHHHHhccCC--CccccEEEecCCCCcCCCccc
Q 010017          474 A-SELSKEKTISLLYGELRKWTSKCS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       474 ~-~~~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      . +-...+++++.+.+++...+....  |+|++|.+++++|+.++|.+|
T Consensus       537 ~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t  585 (613)
T COG1022         537 REELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELT  585 (613)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccc
Confidence            2 335788899999999888887655  999999999999999999886

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.5e-72  Score=541.08  Aligned_cols=459  Identities=27%  Similarity=0.416  Sum_probs=392.2

Q ss_pred             EEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCC-----ccCCccceeHHHHHHhchhhhcccCCcchhhcccccC
Q 010017            5 LAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPD-----IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE   79 (520)
Q Consensus         5 ~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (520)
                      .++++.++++++...+++.+.+|+||+.++...+...+     ..+++.+++|+++++.+.....+            +.
T Consensus       165 ~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~------------~~  232 (678)
T KOG1180|consen  165 AIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIP------------PH  232 (678)
T ss_pred             EEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCC------------CC
Confidence            45667889999999999999999999998532221111     23467889999999998765321            23


Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc-CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecch
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV  158 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~~  158 (520)
                      ++.|+|+|+|||||||||.||||+++|+|+++.+....... .+.+.|+++.+|||.|++.+...+.++..|+.+.+.++
T Consensus       233 ~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~  312 (678)
T KOG1180|consen  233 PPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSP  312 (678)
T ss_pred             CCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCc
Confidence            34789999999999999999999999999999888876655 67899999999999999999999999999999999766


Q ss_pred             hhHH-----------HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccC
Q 010017          159 RNLK-----------DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  227 (520)
Q Consensus       159 ~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (520)
                      .++.           .++..+|||+|.+||.+|+++.+.+...+...+.+.+.++..+.....+....            
T Consensus       313 ~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~------------  380 (678)
T KOG1180|consen  313 LTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER------------  380 (678)
T ss_pred             ceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc------------
Confidence            5544           36778999999999999999999999998888877766654443322221110            


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEecCCCCChhHHHHHHH-hCCeeeecccccc
Q 010017          228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTE  305 (520)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~~~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE  305 (520)
                                            .-|-..+++.++|+++++.+|. +|.+++||+|++++.++|+.. +.+++.++||.||
T Consensus       381 ----------------------~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTE  438 (678)
T KOG1180|consen  381 ----------------------NGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTE  438 (678)
T ss_pred             ----------------------cCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccc
Confidence                                  1123457899999999999985 799999999999999999987 4779999999999


Q ss_pred             cccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCC--ccEEEEecCCCCccccCCchhhhcccCC-CC--ccc
Q 010017          306 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLN  380 (520)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~--~GEl~v~gp~v~~GY~~~~~~t~~~f~~-~g--w~~  380 (520)
                      +++..+...+.+...|.+|.|++.++++++|-+.+.-.+.+.  .||||++|+++..||||||+.|++.|.. +|  ||+
T Consensus       439 tca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~  518 (678)
T KOG1180|consen  439 TCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFR  518 (678)
T ss_pred             hhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEe
Confidence            999888888888888999999999999999976554444444  7999999999999999999999999987 88  999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHH
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEE  459 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~  459 (520)
                      |||+|++.+          ||.|.|++|+||++|+.+||+|+++.||.++++.|.|++.+|++++ +..++++|||+...
T Consensus       519 TGDIGe~~p----------dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~  588 (678)
T KOG1180|consen  519 TGDIGEFHP----------DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKH  588 (678)
T ss_pred             ccccceecC----------CCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchH
Confidence            999999999          8999999999999999999999999999999999999999999975 56899999999999


Q ss_pred             HHHHHHHcCCCcCCccc-cChHHHHHHHHHHHHHHhccCC----CccccEEEecCCCCcCCCccc
Q 010017          460 VLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSKCS----FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      +..++++.|+......+ +.+.++++.+.+.|.++.....    |.+.+|.|.+++||+|||.+|
T Consensus       589 lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT  653 (678)
T KOG1180|consen  589 LTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVT  653 (678)
T ss_pred             HHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccH
Confidence            99999999998865555 6889999999999999887654    888999999999999999987

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-65  Score=550.33  Aligned_cols=393  Identities=28%  Similarity=0.387  Sum_probs=322.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc--CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-  156 (520)
                      ...++|+++|+|||||||.||||++||+|+++++.......  ...+.|++++++|++|++++...+.++..|+++++. 
T Consensus       300 ~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~  379 (746)
T PTZ00342        300 NEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWS  379 (746)
T ss_pred             CCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeC
Confidence            45789999999999999999999999999998876554321  233568999999999999998878889999999874 


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..++++|++++||+++++|++|+.++..+.......+.+.+.+..+++.......      .+.             
T Consensus       380 ~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~-------------  440 (746)
T PTZ00342        380 KDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNN------NGG-------------  440 (746)
T ss_pred             CCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh------cCC-------------
Confidence             688999999999999999999999999998877766666666666665554433211      000             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHhhcC-CceeEEecCCCCChhHHHHHH-HhCCeeeeccccccccccee
Q 010017          236 ALIDWLWARIICAILWPLHLLAEK--LVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~  311 (520)
                                       ...+.+.  .++++++..++ .+|.+++||+++++++.+++. .+|++++++||+||+++..+
T Consensus       441 -----------------~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        441 -----------------FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF  503 (746)
T ss_pred             -----------------cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceee
Confidence                             0011111  25778888885 579999999999999866554 68999999999999987766


Q ss_pred             ccCCCCCCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          312 ARRPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       312 ~~~~~~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      ...+.....+++|.|+ |+++++|+|.+++...+.+..|||+++||++|.|||++|+.|+++|+.||||+|||+|++++ 
T Consensus       504 ~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~-  582 (746)
T PTZ00342        504 VQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK-  582 (746)
T ss_pred             eccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC-
Confidence            6655556678999998 99999999865555555566899999999999999999999999998899999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHHHHHHHHHcC-
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLS-  468 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~~-  468 (520)
                               ||+++|+||+||+||+++|++|+|.+||+++.+||.|.+|+|+|.+ .++++|+|+|+++.+.+|+++.+ 
T Consensus       583 ---------dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~  653 (746)
T PTZ00342        583 ---------NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNM  653 (746)
T ss_pred             ---------CCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCC
Confidence                     8999999999999998789999999999999999999999999976 56899999999999999999764 


Q ss_pred             -----CCcCCcc------ccChHHHHHHHHHHHHHH--hccCC--CccccEEEecCCCCcCCCccc
Q 010017          469 -----IVHADAS------ELSKEKTISLLYGELRKW--TSKCS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       469 -----~~~~~~~------~~~~~~~~~~~~~~l~~~--~~~~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                           +...+..      .+..+++++++++.+.+.  +....  |+|++|+|++++|++ ||.||
T Consensus       654 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lT  718 (746)
T PTZ00342        654 LESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLT  718 (746)
T ss_pred             ccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccC
Confidence                 3222211      235567899999999998  32333  999999999999999 56776

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4e-65  Score=550.19  Aligned_cols=462  Identities=26%  Similarity=0.428  Sum_probs=350.6

Q ss_pred             EEEEEcChhhHHHHHHHhcc-CCCceEEEEEcCCCCCCCC-CccCCccceeHHHHHHhchhhhcccCCcchhhcccccCC
Q 010017            3 VALAVENPEFFNRIAETLCS-KAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYET   80 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~-~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (520)
                      +++|+ +.+.++.+.+.+.. .+.++.+|++++....... ....+....+++++++.+.....            +...
T Consensus       153 ~~vi~-~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  219 (666)
T PLN02614        153 SIVFV-EEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQY------------DLPI  219 (666)
T ss_pred             CEEEE-CHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCC------------CCCC
Confidence            44555 45555555544332 2347788877532110000 00012334678887764321110            1123


Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc-----CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-----PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..++|+++|+|||||||.||||++||+|+.+.+......+     ++.++|++++++|++|++++...+..+..|+++++
T Consensus       220 ~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~  299 (666)
T PLN02614        220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGF  299 (666)
T ss_pred             CCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEE
Confidence            4689999999999999999999999999988766554433     56789999999999999998766666788999887


Q ss_pred             c--chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          156 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       156 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .  ++..+++.|++++||+++++|++|..++..+.......+.+.+.+..++.......     ...+..          
T Consensus       300 ~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~----------  364 (666)
T PLN02614        300 WRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN-----MKKGQS----------  364 (666)
T ss_pred             eCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----HHcCCC----------
Confidence            4  67889999999999999999999999988766555444444433333322211100     000000          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHHhC-Ceeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIG-VKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~  311 (520)
                                      ......+++++++++++..++ .+|.+++||+++++.+.++++.++ ++++++||+||+++..+
T Consensus       365 ----------------~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  428 (666)
T PLN02614        365 ----------------HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTF  428 (666)
T ss_pred             ----------------CcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhhee
Confidence                            000123456677788888885 679999999999988888888874 89999999999876555


Q ss_pred             ccCCCC-CCccccccCcCCeEEEEEeC-C-CCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          312 ARRPTC-NVLGSVGHPINHTEIKIVDA-E-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       312 ~~~~~~-~~~~~~G~~~~~~~v~ivd~-~-~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      ...+.. ...+++|+|+|+++++|+|. + .++++++|+.|||+++||++|.|||++|+.|+++|. +|||+|||+|++|
T Consensus       429 ~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d  507 (666)
T PLN02614        429 VSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQ  507 (666)
T ss_pred             eeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc-cCCcccceEEEEc
Confidence            444332 34689999999999999983 3 347889999999999999999999999999999994 8999999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHHHHHHHHHc
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~  467 (520)
                      +          ||+|+|+||+||+||+++|+||+|.|||++|.+||.|.+|+|+|.+ +++++|+|+|+.+.+.+|++++
T Consensus       508 ~----------dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~  577 (666)
T PLN02614        508 P----------NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAEN  577 (666)
T ss_pred             C----------CCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhc
Confidence            9          8999999999999997789999999999999999999999999998 5799999999999999999998


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHh--ccCC--CccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWT--SKCS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ++.......+..+++++.+.+.+.+..  ...+  |+|++|.|++++||++||+||
T Consensus       578 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lT  633 (666)
T PLN02614        578 GVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLT  633 (666)
T ss_pred             CCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCC
Confidence            876322233577889999999887763  3333  999999999999999999997

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.1e-63  Score=541.64  Aligned_cols=466  Identities=26%  Similarity=0.381  Sum_probs=359.7

Q ss_pred             cEEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCC--CccCCccceeHHHHHHhchhhhcccCCcchhhcccccC
Q 010017            2 CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP--DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE   79 (520)
Q Consensus         2 ~~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (520)
                      ++++|+ +.++++.+.++...++.++.||++++.......  .....+...+|+++.+.+.....            +..
T Consensus       179 ~~~li~-~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  245 (696)
T PLN02387        179 VTTVIC-DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPV------------DPD  245 (696)
T ss_pred             CCEEEE-CHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCC------------CCC
Confidence            345555 577888888887788889999998653221000  01123445788888776532111            112


Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc-CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecch
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV  158 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~~  158 (520)
                      ...++|+++|+|||||||.||||++||+|+.+++......+ ++.++|++++++|++|++++...+.++..|+++.+.+.
T Consensus       246 ~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~  325 (696)
T PLN02387        246 LPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSP  325 (696)
T ss_pred             CCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECCh
Confidence            34689999999999999999999999999998877665443 57889999999999999999876666777777665322


Q ss_pred             -----------hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccC
Q 010017          159 -----------RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  227 (520)
Q Consensus       159 -----------~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (520)
                                 ..++.++++++||+++++|+++..+.+.+.......+.+.+.+...+.......      ..+....  
T Consensus       326 ~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~------~~~~~~~--  397 (696)
T PLN02387        326 LTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAA------IEGSWFG--  397 (696)
T ss_pred             hhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH------hccCCcc--
Confidence                       234568999999999999999999988776555444444444444333211110      0000000  


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHH-hCCeeeecccccc
Q 010017          228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTE  305 (520)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE  305 (520)
                         +                  ....+.+++.+++++++..+| .+|.+++||+++++++.++++. +|++++++||+||
T Consensus       398 ---~------------------~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TE  456 (696)
T PLN02387        398 ---A------------------WGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTE  456 (696)
T ss_pred             ---c------------------ccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhh
Confidence               0                  001234667888999988885 5799999999999999877774 7999999999999


Q ss_pred             cccceeccCCCCCCccccccCcCCeEEEEEeC-CCCCcC--CCCCccEEEEecCCCCccccCCchhhhcccC--CCC--c
Q 010017          306 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVL--PAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--W  378 (520)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~-~~~~~~--~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~--~~g--w  378 (520)
                      +++.++...+.....+++|.|+|+++++|+|. +.+..+  .++..|||+++||++|+|||++|+.|+++|.  .+|  |
T Consensus       457 t~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W  536 (696)
T PLN02387        457 TCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRW  536 (696)
T ss_pred             cccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCce
Confidence            98777666555556789999999999999994 333322  3455799999999999999999999999983  345  9


Q ss_pred             cccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcCh
Q 010017          379 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDK  457 (520)
Q Consensus       379 ~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~  457 (520)
                      |+|||+|++|+          ||+++|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|.+ +++++|+|+|++
T Consensus       537 ~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~  606 (696)
T PLN02387        537 FYTGDIGQFHP----------DGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQ  606 (696)
T ss_pred             eecCceEEECC----------CCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCH
Confidence            99999999999          8999999999999998679999999999999999999999999998 788999999999


Q ss_pred             HHHHHHHHHcCCCcCCccc-cChHHHHHHHHHHHHHHhcc--CC--CccccEEEecCCCCcCCCccc
Q 010017          458 EEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSK--CS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      +.+..|+++.++......+ +..+++++.+.+.+.+.+..  ..  ++|++|++++++||++||+||
T Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT  673 (696)
T PLN02387        607 QALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVT  673 (696)
T ss_pred             HHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCC
Confidence            9999999998876544333 57788999999999988542  22  899999999999999999987

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.3e-63  Score=534.07  Aligned_cols=461  Identities=27%  Similarity=0.402  Sum_probs=352.5

Q ss_pred             EEEEEcChhhHHHHHHHhccCC-CceEEEEEcCCCCCCC-CCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCC
Q 010017            3 VALAVENPEFFNRIAETLCSKA-AMRFIILLWGKKSSVA-PDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYET   80 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (520)
                      +++++ +.+..+.+.+.....+ .++.||++++...... .....+....+|+++++.+...             .....
T Consensus       151 ~~v~~-~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  216 (660)
T PLN02861        151 SIAFV-QESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-------------CELPP  216 (660)
T ss_pred             CEEEE-CHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-------------CCCCc
Confidence            45555 4556677766655553 6888888754211000 0000123346788877543211             01123


Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC-----CCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-----AENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..++|+++|+|||||||.||||++||+|+++.+......++     +.++|++++++|++|++++...+.++..|+++++
T Consensus       217 ~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~  296 (660)
T PLN02861        217 KQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGF  296 (660)
T ss_pred             cCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEE
Confidence            46899999999999999999999999999887766554443     4678999999999999998776678899999877


Q ss_pred             c--chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          156 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       156 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .  ++..+++.|++++||+++++|++|..++..+.......+.+.+.+..++.........     .+..          
T Consensus       297 ~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~-----~~~~----------  361 (660)
T PLN02861        297 WQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR-----KGLK----------  361 (660)
T ss_pred             eCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh-----cCCC----------
Confidence            4  6788999999999999999999999999887777666666666555554443322110     0000          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHHhCC-eeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~  311 (520)
                                      ........++..+++++..+| .+|.+++||+++++++.++++.++. +++++||+||+++.++
T Consensus       362 ----------------~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  425 (660)
T PLN02861        362 ----------------QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCF  425 (660)
T ss_pred             ----------------CcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhcee
Confidence                            000112345667788888885 5799999999999999888888774 7999999999876655


Q ss_pred             ccCCC-CCCccccccCcCCeEEEEEeC-CCC-CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          312 ARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       312 ~~~~~-~~~~~~~G~~~~~~~v~ivd~-~~~-~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      ..... ....+++|+|+|+++++|+|. +.| ..+++++.|||+++||+++.|||++|+.|+++|. +|||+|||+|++|
T Consensus       426 ~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d  504 (660)
T PLN02861        426 TSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQ  504 (660)
T ss_pred             ecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-ccCcccCceEEEC
Confidence            44332 234689999999999999983 333 4455677899999999999999999999999994 8999999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC-ceeEEEEEcChHHHHHHHHHc
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-RRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-~~~~a~vv~~~~~~~~~~~~~  467 (520)
                      +          ||+++|+||+||+||+++|+||+|.+||++|.+||.|.+|+|+|.++ +.++|+||++.+.+.+|++++
T Consensus       505 ~----------dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~  574 (660)
T PLN02861        505 P----------NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANN  574 (660)
T ss_pred             C----------CCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHc
Confidence            9          89999999999999977899999999999999999999999999984 689999999999999999988


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhcc----CCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      +......+-+...+++..+.+.+.+.+..    ..++|++|.+++++||++||+||
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT  630 (660)
T PLN02861        575 NKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLIT  630 (660)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCC
Confidence            65322112244566778888888887654    23999999999999999999987

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.4e-62  Score=529.89  Aligned_cols=464  Identities=28%  Similarity=0.429  Sum_probs=360.7

Q ss_pred             cEEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCC-CccCCccceeHHHHHHhchhhhcccCCcchhhcccccCC
Q 010017            2 CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYET   80 (520)
Q Consensus         2 ~~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (520)
                      ++++++.+..+.+.+.......+.++.||++++....... ....++..++|++++..+.....            ....
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  216 (660)
T PLN02430        149 IDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPS------------ETNP  216 (660)
T ss_pred             CCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCC------------CCCC
Confidence            4566666544555555444446678889887642211000 00112345788888765532111            1123


Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---c--CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---V--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~--~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..++|+++|+|||||||.||||++||+|+.+++......   +  ++.++|++++++|++|++++...+.++..|+++++
T Consensus       217 ~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~  296 (660)
T PLN02430        217 PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGY  296 (660)
T ss_pred             cCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEE
Confidence            468999999999999999999999999998877654322   1  46788999999999999998877777889999876


Q ss_pred             c--chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          156 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       156 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .  ++..++++|++++||++.++|++|+.+.+.+...........+.+..++.........     .+..          
T Consensus       297 ~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------  361 (660)
T PLN02430        297 YHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMN-----RGYS----------  361 (660)
T ss_pred             eCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh-----cCCC----------
Confidence            3  5788999999999999999999999999888776665555555555554444322210     0000          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHHhC-Ceeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIG-VKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~  311 (520)
                                      ......+++.+.+++++..+| .+|.+++||+++++++.++++.++ ++++++||+||+++..+
T Consensus       362 ----------------~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  425 (660)
T PLN02430        362 ----------------HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTT  425 (660)
T ss_pred             ----------------CCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceE
Confidence                            001123456778889988886 579999999999999988888776 67999999999987666


Q ss_pred             ccCCCC-CCccccccCcCCeEEEEEeC-CCC-CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          312 ARRPTC-NVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       312 ~~~~~~-~~~~~~G~~~~~~~v~ivd~-~~~-~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      ...+.. ...+++|+|.|+++++++|. +.+ .+++.+..|||+++||+++.|||++|+.|+++| .+|||+|||+|+++
T Consensus       426 ~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d  504 (660)
T PLN02430        426 LGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEIL  504 (660)
T ss_pred             eeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEEC
Confidence            554432 34689999999999999873 333 456667789999999999999999999999999 59999999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHHHHHHHHHc
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~  467 (520)
                      +          ||+++|.||+||+||+++|++|+|.+||+++.+||.|.+|+|+|.+ +++++|+|+|+++.+.+|+++.
T Consensus       505 ~----------dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~  574 (660)
T PLN02430        505 P----------NGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDN  574 (660)
T ss_pred             C----------CCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhC
Confidence            8          8999999999999998789999999999999999999999999986 5789999999999999999998


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhcc--CC--CccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSK--CS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ++.....+-+..+++++.+.+.+.+++..  .+  ++|++|.|++++||++||+||
T Consensus       575 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT  630 (660)
T PLN02430        575 GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVT  630 (660)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCC
Confidence            87533223357788999999999998542  33  999999999999999999997

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.6e-62  Score=529.36  Aligned_cols=460  Identities=28%  Similarity=0.432  Sum_probs=359.1

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCC-CccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC
Q 010017            3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAP-DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI   81 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (520)
                      +++|+ +.++.+.+.++...++.++.+|++++....... ....++...+|+++++.+.....            +....
T Consensus       152 ~~l~~-~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  218 (651)
T PLN02736        152 AAIFC-VPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQ------------PFRPP  218 (651)
T ss_pred             CEEEE-CHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCC------------CCCCC
Confidence            44555 467788888887778889998887532111000 00113345788888764321110            11234


Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--chh
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVR  159 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--~~~  159 (520)
                      .++|+++|+|||||||.||||++||+|+++++......+++.++|++++++|++|++++...+.++..|+++++.  ++.
T Consensus       219 ~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~  298 (651)
T PLN02736        219 KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNL  298 (651)
T ss_pred             CccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHH
Confidence            689999999999999999999999999999888887788889999999999999999998777788999998874  567


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.|++++||+++++|++|..+...+.......+.+.+.+...+.......     ...+                  
T Consensus       299 ~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------------  355 (651)
T PLN02736        299 KLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQA-----LENG------------------  355 (651)
T ss_pred             HHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----HHcC------------------
Confidence            89999999999999999999999988877666655555554444332221100     0000                  


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHH-HHHHhCCeeeecccccccccceeccCCCC
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC  317 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  317 (520)
                                 .+.....+++++.+++..++ .+|.+++||+++++++.+ +.+.+|++++++||+||+++.++...+..
T Consensus       356 -----------~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~  424 (651)
T PLN02736        356 -----------KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGD  424 (651)
T ss_pred             -----------CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCC
Confidence                       00111234556667777775 679999999999999854 44568999999999999987766555545


Q ss_pred             CCccccccCcCCeEEEEEeCCCCC---cCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          318 NVLGSVGHPINHTEIKIVDAETNE---VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       318 ~~~~~~G~~~~~~~v~ivd~~~~~---~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      ...+++|+|+|+++++|+|.+++.   ...+++.|||+++||++|.|||++|+.|+++|+.+|||+|||+|++++     
T Consensus       425 ~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~-----  499 (651)
T PLN02736        425 NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP-----  499 (651)
T ss_pred             CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC-----
Confidence            567899999999999999854332   223445799999999999999999999999998899999999999999     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-CceeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHAD  473 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~  473 (520)
                           ||+++|+||+||+||+++|++|+|.|||++|.+||.|.+|+|+|.. .+.+.|+||++++.+.+|++..++....
T Consensus       500 -----dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~  574 (651)
T PLN02736        500 -----GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYED  574 (651)
T ss_pred             -----CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccC
Confidence                 8999999999999997689999999999999999999999999975 4689999999999999999988765333


Q ss_pred             ccc-cChHHHHHHHHHHHHHHhcc--CC--CccccEEEecCCCCcCCCccc
Q 010017          474 ASE-LSKEKTISLLYGELRKWTSK--CS--FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       474 ~~~-~~~~~~~~~~~~~l~~~~~~--~~--~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ..+ +..+++++.+.+.|.+++..  ..  ++|++|.+++++|+++||+||
T Consensus       575 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT  625 (651)
T PLN02736        575 LKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLT  625 (651)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCC
Confidence            222 45678889999999888543  22  899999999999999999987

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-63  Score=507.80  Aligned_cols=332  Identities=31%  Similarity=0.477  Sum_probs=293.1

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEe--
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--  155 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~--  155 (520)
                      .....+|++.|+|||||||.||||++||++++.+.............|+.++.+|++|++|+...+.+ +..|++++.  
T Consensus       179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~  258 (537)
T KOG1176|consen  179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR  258 (537)
T ss_pred             ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC
Confidence            45577999999999999999999999999999888777776777779999999999999999987775 556666665  


Q ss_pred             -cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          156 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       156 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                       +++..+++.|++|++|++..+|.++..+++....                                             
T Consensus       259 ~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~---------------------------------------------  293 (537)
T KOG1176|consen  259 KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIV---------------------------------------------  293 (537)
T ss_pred             CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCcc---------------------------------------------
Confidence             4789999999999999999999999888663100                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-Ceeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  312 (520)
                                                    ....+..++.+.+||++++.++ +++.+.++ ..+.++||+||+++.++.
T Consensus       294 ------------------------------~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~  343 (537)
T KOG1176|consen  294 ------------------------------KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITS  343 (537)
T ss_pred             ------------------------------CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceee
Confidence                                          0123444588889999998876 77788888 889999999999987777


Q ss_pred             cCCCC-CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          313 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       313 ~~~~~-~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      +.... .+.+++|++++++..++.+ ++|+.+++++.||||++|+++++||||||++|+++|+.+|||||||+|++|+  
T Consensus       344 ~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~--  420 (537)
T KOG1176|consen  344 NDWGPERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE--  420 (537)
T ss_pred             cCCCccCcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC--
Confidence            66544 4789999999988887776 7899999999999999999999999999999999998889999999999999  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||+|+|.||+||+||. +|++|+|.|||++|.+||.|.||+|+|.+|+.    ++|+||.+++         
T Consensus       421 --------DG~l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g---------  482 (537)
T KOG1176|consen  421 --------DGYLYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG---------  482 (537)
T ss_pred             --------CCeEEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC---------
Confidence                    9999999999999996 99999999999999999999999999999875    5599999865         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                             +.+++++++++++++|+.|+     .++++.++++.+...|||+
T Consensus       483 -------~~lte~di~~~v~k~l~~y~-----~~~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  483 -------STLTEKDIIEYVRKKLPAYK-----LPGGVVFVDELPKTPNGKI  521 (537)
T ss_pred             -------CcCCHHHHHHHHHhhCChhh-----ccCeEEEeccCCCCCcchH
Confidence                   67899999999999999987     7799999999999999996

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-60  Score=517.42  Aligned_cols=457  Identities=25%  Similarity=0.361  Sum_probs=346.5

Q ss_pred             EEEEEcChhhHHHHHHHhcc--CCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCC
Q 010017            3 VALAVENPEFFNRIAETLCS--KAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYET   80 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (520)
                      +++++ +.+..+++.+.+..  .+.+ .+|++++.....   ....+..++|++++..+.......         .....
T Consensus       195 ~~lv~-~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  260 (700)
T PTZ00216        195 KAIVC-NGKNVPNLLRLMKSGGMPNT-TIIYLDSLPASV---DTEGCRLVAWTDVVAKGHSAGSHH---------PLNIP  260 (700)
T ss_pred             cEEEE-CHHHHHHHHHhhhhccCCce-EEEEECCCcccc---ccCCceEEEHHHHHHhCCcccccc---------ccCCC
Confidence            44454 45555666555432  2333 455554321111   112445678999887653111000         01123


Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc----C-CCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV----P-AENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~----~-~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..++|+++|+|||||||.||||++||+|+.+++......+    + ..++|++++++|++|++++......+..|+++++
T Consensus       261 ~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~  340 (700)
T PTZ00216        261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF  340 (700)
T ss_pred             CCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE
Confidence            4689999999999999999999999999998777655433    2 3678999999999999998766666788888877


Q ss_pred             cchhhHHH-------HHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCC
Q 010017          156 TAVRNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  228 (520)
Q Consensus       156 ~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (520)
                      .++..+.+       ++++++||++.++|++|+.+.+.........+.+.+.+...+.......     ...+.      
T Consensus       341 ~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~------  409 (700)
T PTZ00216        341 GSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRA-----LKEGK------  409 (700)
T ss_pred             CCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----HHcCC------
Confidence            66666655       7899999999999999999998876665555555544444333322110     00000      


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhHHHHHHH-hCCeeeeccccccc
Q 010017          229 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTES  306 (520)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE~  306 (520)
                                              ...+++.++|.+++..+| .+|.+++||+++++++.++++. ++ +++++||+||+
T Consensus       410 ------------------------~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt  464 (700)
T PTZ00216        410 ------------------------DTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTET  464 (700)
T ss_pred             ------------------------CCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccc
Confidence                                    112356677888888885 5799999999999998776664 56 99999999999


Q ss_pred             ccceeccCCCCCCccccccCcCCeEEEEEeCCCC-CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCcee
Q 010017          307 SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  385 (520)
Q Consensus       307 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~-~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg  385 (520)
                      ++..+.........+++|+|+|+++++|+|.++. ...+++..|||+|+||+++.|||++|+.|+++|+.+|||+|||+|
T Consensus       465 ~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig  544 (700)
T PTZ00216        465 VCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG  544 (700)
T ss_pred             cccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceE
Confidence            8766655555556789999999999999996532 234567789999999999999999999999999989999999999


Q ss_pred             eeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccce---EEEEeCCCceeEEEEEcChHHHHH
Q 010017          386 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIVPDKEEVLM  462 (520)
Q Consensus       386 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~---~~Vvg~~~~~~~a~vv~~~~~~~~  462 (520)
                      ++++          ||+++|+||+||+||+++|++|+|.+||+++.+||.|.+   +++++..+++++|+|+++.+.+.+
T Consensus       545 ~~d~----------dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~  614 (700)
T PTZ00216        545 SIAA----------NGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMA  614 (700)
T ss_pred             EEcC----------CCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHH
Confidence            9999          899999999999998669999999999999999999996   444555678999999999999999


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhcc--C--CCccccEEEecCCCCcCCCccc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSK--C--SFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      |++++++.....+.+..+++++.+.+.+.+..+.  .  .|+|++|++++++||++||+||
T Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT  675 (700)
T PTZ00216        615 FAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLT  675 (700)
T ss_pred             HHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCC
Confidence            9999887532223357788999999999887543  2  2899999999999999999997

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=5.1e-58  Score=437.17  Aligned_cols=375  Identities=26%  Similarity=0.396  Sum_probs=311.2

Q ss_pred             CCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEecCCCCCCchhh
Q 010017           23 KAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGV  102 (520)
Q Consensus        23 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv  102 (520)
                      +|.++++|..+++....        ..+.++|++..+..+......+       ......|||++.|+|||||||.|||+
T Consensus       188 lp~lthvi~~~ed~~~~--------Ga~~~sev~~~~s~~~~a~l~~-------~~k~~~pdd~~niQFTSGTTG~PKga  252 (596)
T KOG1177|consen  188 LPELTHVILADEDHPLP--------GAFLLSEVLKAASKEERAKLAD-------MSKWLSPDDAVNIQFTSGTTGAPKGA  252 (596)
T ss_pred             cccceEEEecCCCCcCC--------CceehHHHHHhcchHHHHHHHh-------hhhhcCCCCceEEEeccCCCCCCcce
Confidence            58889999876332221        3377899998876543222111       11345789999999999999999999


Q ss_pred             hhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec----chhhHHHHHhhhCCcEEEecc
Q 010017          103 MLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVP  177 (520)
Q Consensus       103 ~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~~P  177 (520)
                      .+||.|++++.......+++...++++...|+||++|... .+.++..|++++++    ++.+.++.|.++|+|.++++|
T Consensus       253 tLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtP  332 (596)
T KOG1177|consen  253 TLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTP  332 (596)
T ss_pred             eeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecCh
Confidence            9999999999999999999999889999999999999665 67789999999993    688999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 010017          178 LVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLA  257 (520)
Q Consensus       178 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (520)
                      +++..+++..+....                                                                 
T Consensus       333 tM~~Dlln~~~~~~~-----------------------------------------------------------------  347 (596)
T KOG1177|consen  333 TMFVDLLNIPQKQQV-----------------------------------------------------------------  347 (596)
T ss_pred             HHHHHHhcchhhccC-----------------------------------------------------------------
Confidence            999988764322211                                                                 


Q ss_pred             HHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCe-eeecccccccccceeccCCCC---CCccccccCcCCeEE
Q 010017          258 EKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTC---NVLGSVGHPINHTEI  332 (520)
Q Consensus       258 ~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~---~~~~~~G~~~~~~~v  332 (520)
                                .++.+|.++.||+++|+++ +...+..++. +..+||+||+++..+...+.+   ....++|+.+++.+.
T Consensus       348 ----------~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea  417 (596)
T KOG1177|consen  348 ----------DLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEA  417 (596)
T ss_pred             ----------chhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccc
Confidence                      1122377889999999998 6666666654 778999999998877765443   456799999999999


Q ss_pred             EEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccce
Q 010017          333 KIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT  412 (520)
Q Consensus       333 ~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~  412 (520)
                      .|+| +.|..+|-|..|||++||++.|.|||++++.|.++...|.||+|||+|.+++          +|+++|+||.|||
T Consensus       418 ~iv~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----------nG~i~iVGRskdm  486 (596)
T KOG1177|consen  418 AIVD-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----------NGTIEIVGRSKDM  486 (596)
T ss_pred             cccc-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----------CCcEEEEEcccCe
Confidence            9999 6789999999999999999999999999999999999999999999999999          8999999999999


Q ss_pred             EEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeE----EEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHH
Q 010017          413 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG  488 (520)
Q Consensus       413 i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~----a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (520)
                      |+. +|+||+|.|||..|.+||.|.++.|||++|++++    |.|-+..+.              ....+.++|+.+|+.
T Consensus       487 I~r-GGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~--------------e~~~t~E~lKa~Ck~  551 (596)
T KOG1177|consen  487 IIR-GGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGA--------------EGKTTAETLKAMCKG  551 (596)
T ss_pred             EEe-CCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccc--------------cccccHHHHHHHHhc
Confidence            985 9999999999999999999999999999999877    444444331              012689999999999


Q ss_pred             HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          489 ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       489 ~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .|..|+.|     +.|.++++-+.+-+||+
T Consensus       552 klaHFKiP-----ky~vf~~~FPlT~tGKI  576 (596)
T KOG1177|consen  552 KLAHFKIP-----KYFVFVDEFPLTTTGKI  576 (596)
T ss_pred             ccccccCC-----cEEEEeccCcccccccc
Confidence            99999855     78999999777777775

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.6e-56  Score=467.26  Aligned_cols=332  Identities=35%  Similarity=0.557  Sum_probs=287.9

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC--CCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEec-
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT-  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~~-  156 (520)
                      .+++|+++|+|||||||.||||++||+|+..+...+...++  +.+.|++++++|+||++|+...+.+ +..|+++++. 
T Consensus       168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~  247 (534)
T COG0318         168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS  247 (534)
T ss_pred             CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence            57999999999999999999999999999999888888888  8999999999999999999987665 8888888874 


Q ss_pred             ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                          ++..++..+.++++|++.++|+++..++.......                                         
T Consensus       248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------------------------------  286 (534)
T COG0318         248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------------------------------  286 (534)
T ss_pred             CCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------------------------------
Confidence                46789999999999999999999998765421100                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceeEEecCCCCChhH-HHHHHHhC-Ceeeecccccccccc
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPV  309 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~  309 (520)
                                                        ..+. .+|.+++||+++++++ +++.+.++ ..++++||+||+++.
T Consensus       287 ----------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  332 (534)
T COG0318         287 ----------------------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPV  332 (534)
T ss_pred             ----------------------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCce
Confidence                                              0011 1499999999999887 77777887 479999999999987


Q ss_pred             eeccCCCC--CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeee
Q 010017          310 IAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  387 (520)
Q Consensus       310 ~~~~~~~~--~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~  387 (520)
                      ++......  ...+++|+|.|+++++|+|+++++++| |++|||+++||+++.|||++|+.|+++|+.+|||+|||+|++
T Consensus       333 ~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~  411 (534)
T COG0318         333 VTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYV  411 (534)
T ss_pred             eecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEE
Confidence            77766554  466788999999999999988776777 999999999999999999999999999976799999999999


Q ss_pred             ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHH
Q 010017          388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  463 (520)
Q Consensus       388 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  463 (520)
                      |+          +|+++|.||.||+|+. +|+||+|.|||+++.+||.|.+|+|+|.+++    .++|+|+++++.    
T Consensus       412 d~----------~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~----  476 (534)
T COG0318         412 DE----------DGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG----  476 (534)
T ss_pred             cC----------CccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC----
Confidence            99          8999999999999995 9999999999999999999999999999876    456888887531    


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               . ...+.++++++++++++.|+     .++++.++++.+...+||+
T Consensus       477 ---------~-~~~~~~~i~~~~~~~l~~~~-----~P~~v~~v~~lP~t~sGKi  516 (534)
T COG0318         477 ---------D-AELTAEELRAFLRKRLALYK-----VPRIVVFVDELPRTASGKI  516 (534)
T ss_pred             ---------C-CCCCHHHHHHHHHhhhhccc-----CCeEEEEeCCCCCCCchhh
Confidence                     0 23478999999999999998     5588999999999999997

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=5.1e-53  Score=454.09  Aligned_cols=353  Identities=24%  Similarity=0.373  Sum_probs=284.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCC--CCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEecc
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~--~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~~  157 (520)
                      ..++|+++|+|||||||.||||++||+|+.+++......++..  .++++++++|++|++++.. .+.++..|+++++.+
T Consensus       206 ~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~  285 (614)
T PRK08180        206 VGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD  285 (614)
T ss_pred             CCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence            4679999999999999999999999999998877766666653  5689999999999999765 455788999988742


Q ss_pred             -------hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          158 -------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       158 -------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                             ...+++.++++++|+++++|++|..|++.+....    ..                                 
T Consensus       286 ~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~---------------------------------  328 (614)
T PRK08180        286 GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA----AL---------------------------------  328 (614)
T ss_pred             CCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch----hh---------------------------------
Confidence                   2467888999999999999999998876432100    00                                 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHH----hC--Ceeeecccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEA----IG--VKVQVGYGL  303 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~----~g--~~v~~~YG~  303 (520)
                                                        ....+..+|.+++||+++++++.+ +.+.    +|  +++++.||+
T Consensus       329 ----------------------------------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~  374 (614)
T PRK08180        329 ----------------------------------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM  374 (614)
T ss_pred             ----------------------------------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence                                              001123348999999999998744 4432    34  689999999


Q ss_pred             cccccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017          304 TESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       304 TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      ||++.+++.........+++|+|+|+++++|+|+        |..|||+++||+++.|||++|+.|++.|+.+|||+|||
T Consensus       375 TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGD  446 (614)
T PRK08180        375 TETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD  446 (614)
T ss_pred             cccCCceEecccccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccc
Confidence            9998766654444456789999999999999874        34699999999999999999999999998899999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeec--cHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE--PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL  461 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~--p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~  461 (520)
                      +|++++..      +.+|+++|+||+||+|++++|++|+  |.|+|.++.+||.|.+|+|+|.+++.++|+|+++++...
T Consensus       447 lg~~~~~~------d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~~  520 (614)
T PRK08180        447 AVRFVDPA------DPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACR  520 (614)
T ss_pred             eEEecCCc------CCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHHH
Confidence            99993100      0079999999999999877899776  788899999999999999999999999999999988776


Q ss_pred             HHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCC---CccccEEEecCCCCcCCCccc
Q 010017          462 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS---FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      .++... ........++.+++++++++.|++|+....   +++++|.+++++|+..+||++
T Consensus       521 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t  580 (614)
T PRK08180        521 RLAGLL-ADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEIT  580 (614)
T ss_pred             HHHhhc-ccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccC
Confidence            666554 111111235778999999999999996543   589999999999999999986

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5.5e-54  Score=436.26  Aligned_cols=332  Identities=25%  Similarity=0.310  Sum_probs=278.2

Q ss_pred             cCCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHH-hhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEe
Q 010017           78 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY  155 (520)
Q Consensus        78 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~  155 (520)
                      ....+++|+++|+|||||||.||||+++|+++...... ....+.+.++|++++..++.|++|... .+.++.+|+++++
T Consensus       165 ~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~  244 (528)
T COG0365         165 FEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVL  244 (528)
T ss_pred             ccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEE
Confidence            34578999999999999999999999999987665544 445677789999999999999999988 6778999999976


Q ss_pred             c------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          156 T------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       156 ~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                      +      +++.+++.|+++++|.+++.|+.++.|.+...        .                                
T Consensus       245 ~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------~--------------------------------  284 (528)
T COG0365         245 YDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------G--------------------------------  284 (528)
T ss_pred             eCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------c--------------------------------
Confidence            3      27789999999999999999999998865311        0                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  308 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~  308 (520)
                                                         -+..++.+|.+.+.|||++++. +.+.+.+|++|.+.||+||++.
T Consensus       285 -----------------------------------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~  329 (528)
T COG0365         285 -----------------------------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGM  329 (528)
T ss_pred             -----------------------------------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCc
Confidence                                               0012333499999999999887 6666778999999999999995


Q ss_pred             ceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC--CCCccccCCchhhhcccCCCCccccCceee
Q 010017          309 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       309 ~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp--~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                      ......+ ..+.++.|+|+||+++.++|++ |+++++|+ |+|+++.|  ++++|||+||+.+.+++... ||.|||.++
T Consensus       330 ~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~  405 (528)
T COG0365         330 GFIAGRP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAE  405 (528)
T ss_pred             cccCCCC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeE
Confidence            5554444 4455666999999999999977 99999999 99999986  99999999999999998533 999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +|+          ||+++|+||.||+||+ .|++|.|.|||++|.+||.|.||+|||.+|+    .+.|||+++++    
T Consensus       406 ~De----------dGy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g----  470 (528)
T COG0365         406 RDE----------DGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAG----  470 (528)
T ss_pred             Ecc----------CCCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCC----
Confidence            999          8999999999999996 8999999999999999999999999999764    36689998865    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                  -..+  ++.+.+++.+.+...+ ...+++|.++++.+.+.+||+
T Consensus       471 ------------~~~~--~L~~ei~~~vr~~~~~-~~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         471 ------------VEPN--ELAEEIRRHVARNIGP-HAIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             ------------CChH--HHHHHHHHHHHhccCc-ccCCceEEEecCCCCCCcccH
Confidence                        1122  6666666666555444 347899999999999999997

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-52  Score=452.10  Aligned_cols=352  Identities=26%  Similarity=0.367  Sum_probs=280.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCC---CcEEEEEcChhhHHHHHHhh-hhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYERACGY-FIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~---~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~  155 (520)
                      ...++|+++|+|||||||.||||++||+++.++............   ++++++++|++|++++...+ .++..|+++++
T Consensus       216 ~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl  295 (624)
T PRK12582        216 AITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYI  295 (624)
T ss_pred             cCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEE
Confidence            346799999999999999999999999999887766554444433   58999999999999987644 56788999887


Q ss_pred             cc-------hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCC
Q 010017          156 TA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  228 (520)
Q Consensus       156 ~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (520)
                      ..       ...+++.++++++|+++++|+++..+.......    +...                              
T Consensus       296 ~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~----~~~~------------------------------  341 (624)
T PRK12582        296 DDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD----DALR------------------------------  341 (624)
T ss_pred             cCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhC----HHHH------------------------------
Confidence            42       234677788999999999999998876532110    0000                              


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHH-----h--CCeeeecc
Q 010017          229 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----I--GVKVQVGY  301 (520)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~-----~--g~~v~~~Y  301 (520)
                                                           ...+..+|.+++||+++++++.+.+..     +  +++++++|
T Consensus       342 -------------------------------------~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        342 -------------------------------------RSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             -------------------------------------HHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence                                                 001123489999999999998544443     2  36899999


Q ss_pred             cccccccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCcccc
Q 010017          302 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  381 (520)
Q Consensus       302 G~TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~T  381 (520)
                      |+||++.++..........+++|+|+||++++++        ++|+.|||+++||+++.|||++|+.|++.|+.+|||+|
T Consensus       385 G~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~--------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~T  456 (624)
T PRK12582        385 GATETAPTTTGTHWDTERVGLIGLPLPGVELKLA--------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL  456 (624)
T ss_pred             ccccccceeecccCCCCCCCCCCcCCCCcEEEEc--------cCCCceEEEEECCcccccccCCccchhhhcCccCCccc
Confidence            9999987665333334556899999999999986        35778999999999999999999999999988999999


Q ss_pred             Cceeee-ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHH--HHHhcCcccceEEEEeCCCceeEEEEEcChH
Q 010017          382 GDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE--EAALRSSLIRQIVVIGQDQRRPGAIIVPDKE  458 (520)
Q Consensus       382 GDlg~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE--~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~  458 (520)
                      ||+|++ +++       +++|+++|+||+||+|++++|++|+|.+||  .++.+||.|.+|+|+|++++.++++|+|+.+
T Consensus       457 GDlg~~~d~~-------~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~  529 (624)
T PRK12582        457 GDAARFVDPD-------DPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPA  529 (624)
T ss_pred             cceEEecCCc-------CCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHH
Confidence            999998 421       016899999999999998789999998885  6888999999999999999999999999987


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCC--C-ccccEEEecCCCCcCCCccc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS--F-QIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ....++...+..  ....++.+++.+++++.|++++...+  + +|++|.+++++|+.++|++|
T Consensus       530 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  591 (624)
T PRK12582        530 ACRQLAGDPDAA--PEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEIT  591 (624)
T ss_pred             HHHHHHhcCCCC--HHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCC
Confidence            766665543221  11234678999999999999997655  5 99999999999999999987

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.4e-51  Score=438.31  Aligned_cols=397  Identities=25%  Similarity=0.404  Sum_probs=305.9

Q ss_pred             cEEEEEcC----hhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCc--c------CCccceeHHHHHHhchhhhcccCCc
Q 010017            2 CVALAVEN----PEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDI--V------EEIPVFSYDEIIDLGRESRKAFSDS   69 (520)
Q Consensus         2 ~~~~vv~~----~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~--~------~~~~~~~~~~l~~~~~~~~~~~~~~   69 (520)
                      ++++|+.+    .+..+++.++....+.++.++.++..........  .      ....+..|++.+........     
T Consensus       130 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  204 (632)
T PRK07529        130 AKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRL-----  204 (632)
T ss_pred             CcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccc-----
Confidence            34555542    3456677777777788888887654221000000  0      11233456655443211100     


Q ss_pred             chhhcccccCCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhh
Q 010017           70 NDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFS  148 (520)
Q Consensus        70 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~  148 (520)
                            .......++++++|+|||||||.||||++||+++.++.......+++.++|++++.+|++|+++... .+.++.
T Consensus       205 ------~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~  278 (632)
T PRK07529        205 ------FSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA  278 (632)
T ss_pred             ------cccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHH
Confidence                  0112346799999999999999999999999999988777777778889999999999999998875 566788


Q ss_pred             cCeeEEecc---------hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHh
Q 010017          149 RGIELMYTA---------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIY  219 (520)
Q Consensus       149 ~G~~~~~~~---------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (520)
                      .|+++++.+         ...+++.++++++|.+.++|+++..+.+....                              
T Consensus       279 ~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------------  328 (632)
T PRK07529        279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------------------------------  328 (632)
T ss_pred             CCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence            999998853         24788999999999999999999887542100                              


Q ss_pred             hCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeee
Q 010017          220 EGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQ  298 (520)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~  298 (520)
                                                                    ...+..+|.+++||+++++++ +++.+.+|++++
T Consensus       329 ----------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~  362 (632)
T PRK07529        329 ----------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIV  362 (632)
T ss_pred             ----------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEe
Confidence                                                          001223489999999999998 566667899999


Q ss_pred             ecccccccccceeccCCC-CCCccccccCcCCeEEEEEeC-CCC---CcCCCCCccEEEEecCCCCccccCCchhhhccc
Q 010017          299 VGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN---EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL  373 (520)
Q Consensus       299 ~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~-~~~---~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f  373 (520)
                      +.||+||++..+..+... ....+++|.|+|+++++|+.. +++   +++++|+.|||+++||+++.||++++ .+.+.|
T Consensus       363 ~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~  441 (632)
T PRK07529        363 EGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLW  441 (632)
T ss_pred             eeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccc
Confidence            999999998776655433 235689999999999998632 335   78999999999999999999999865 566667


Q ss_pred             CCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----ee
Q 010017          374 DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  449 (520)
Q Consensus       374 ~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~  449 (520)
                      ..+|||+|||+|++++          ||++++.||.||+||. +|++|+|.+||++|.+||.|.+|+|+|.+++    .+
T Consensus       442 ~~~gw~~TGDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~  510 (632)
T PRK07529        442 LEDGWLNTGDLGRIDA----------DGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELP  510 (632)
T ss_pred             cCCCceEcCcEEEEcC----------CceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCcee
Confidence            6789999999999998          8999999999999996 9999999999999999999999999998764    46


Q ss_pred             EEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHH-HhccCCCccccEEEecCCCCcCCCcc
Q 010017          450 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       450 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .++|++.++                ...+.++++++++++|.. ++     .+++|.++++.+...+||+
T Consensus       511 ~a~v~l~~~----------------~~~~~~~l~~~~~~~l~~~~~-----~P~~i~~v~~lP~t~~GKi  559 (632)
T PRK07529        511 VAYVQLKPG----------------ASATEAELLAFARDHIAERAA-----VPKHVRILDALPKTAVGKI  559 (632)
T ss_pred             EEEEEEcCC----------------CCCCHHHHHHHHHHhcchhcc-----CCcEEEEecCCCCCCCCcc
Confidence            788887654                345678899999999864 45     5688999999999999997

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.8e-51  Score=433.87  Aligned_cols=328  Identities=24%  Similarity=0.382  Sum_probs=270.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++|+|||||||.||||++||+++..+.......+++.++|++++++|++|++++.. .+.++..|+++++.  
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~  258 (539)
T PRK06334        179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN  258 (539)
T ss_pred             CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC
Confidence            456899999999999999999999999999988777777788889999999999999999865 45678899988763  


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+++.....                                            
T Consensus       259 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  294 (539)
T PRK06334        259 PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ--------------------------------------------  294 (539)
T ss_pred             CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc--------------------------------------------
Confidence              5788999999999999999999998876532110                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                     ...+..+|.+++||+++++.+ +.+.+.+ ++++++.||+||++.+++.
T Consensus       295 -------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        295 -------------------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             -------------------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                           011223488999999999987 5566666 6899999999999877665


Q ss_pred             cCCCC-CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc-CCCCccccCceeeeccC
Q 010017          313 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL-DEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       313 ~~~~~-~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f-~~~gw~~TGDlg~~~~~  390 (520)
                      ..... ...+++|+|+++++++|+|+++++++++|+.|||+++|++++.|||++|+.+.... +.+|||+|||+|++++ 
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~-  422 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR-  422 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC-
Confidence            44322 23467999999999999998788999999999999999999999999998765322 3478999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccce------EEEEeCCCceeE--EEEEcChHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ------IVVIGQDQRRPG--AIIVPDKEEVLM  462 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~------~~Vvg~~~~~~~--a~vv~~~~~~~~  462 (520)
                               +|+++|.||.||+||. +|++|+|.|||++|.+||.|.+      ++|+|.+++...  ++++..      
T Consensus       423 ---------~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~------  486 (539)
T PRK06334        423 ---------HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFP------  486 (539)
T ss_pred             ---------CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEecc------
Confidence                     8999999999999996 9999999999999999999998      899998776543  343321      


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                    .+.+++++++++. ++.|+     +++.|.++++.+...|||+
T Consensus       487 --------------~~~~~~~~~l~~~~~~~~~-----~P~~i~~v~~lP~t~~GKi  524 (539)
T PRK06334        487 --------------TSISEVNDILKNSKTSSIL-----KISYHHQVESIPMLGTGKP  524 (539)
T ss_pred             --------------CChHHHHHHHHhcCCcccc-----cchheeeecccccccCCcc
Confidence                          2346777888775 55666     5577999999999999997

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.8e-51  Score=439.34  Aligned_cols=340  Identities=18%  Similarity=0.224  Sum_probs=270.1

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHH-HHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA  157 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~-~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~  157 (520)
                      ...+++|+++|+|||||||.||||++||++ +.+....+...+....+|++++..|++|+.+....+.++..|+++++.+
T Consensus       249 ~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~  328 (647)
T PTZ00237        249 VPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFE  328 (647)
T ss_pred             eeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeC
Confidence            345789999999999999999999999998 4443334444556778899999999999877666777899999998742


Q ss_pred             ---------hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCC
Q 010017          158 ---------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  228 (520)
Q Consensus       158 ---------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (520)
                               +..+++.|+++++|++.++|+++..+.+......    ...                              
T Consensus       329 ~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----~~~------------------------------  374 (647)
T PTZ00237        329 GGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT----IIR------------------------------  374 (647)
T ss_pred             CCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc----ccc------------------------------
Confidence                     4679999999999999999999988765210000    000                              


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhCCeeeecccccccc
Q 010017          229 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESS  307 (520)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g~~v~~~YG~TE~~  307 (520)
                                                          -...+..+|.+++||+++++++. .+.+.+|+++++.||+||++
T Consensus       375 ------------------------------------~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~  418 (647)
T PTZ00237        375 ------------------------------------SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIG  418 (647)
T ss_pred             ------------------------------------cccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhC
Confidence                                                00112234899999999999885 44556899999999999998


Q ss_pred             cceeccCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC---CCCccccCCchhhhcccCC-CCccccC
Q 010017          308 PVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDE-DGWLNTG  382 (520)
Q Consensus       308 ~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp---~v~~GY~~~~~~t~~~f~~-~gw~~TG  382 (520)
                      +..+...+. ....+++|+|+|+++++|+|+ +|+++++|+.|||++++|   +++.|||+||+.+++.|.. +|||+||
T Consensus       419 ~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~-~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TG  497 (647)
T PTZ00237        419 ITYLYCYGHINIPYNATGVPSIFIKPSILSE-DGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSG  497 (647)
T ss_pred             hhhhccCCCCCCCCCCCccCcCCceEEEECC-CCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECC
Confidence            654433322 223478999999999999995 689999999999999986   8899999999999988854 7999999


Q ss_pred             ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChH
Q 010017          383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE  458 (520)
Q Consensus       383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~  458 (520)
                      |+|++++          ||+++|+||+||+||. +|+||+|.|||++|.+||.|.+|+|+|.++    +.+.|+|+++++
T Consensus       498 Dlg~~d~----------dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~  566 (647)
T PTZ00237        498 DLGFKDE----------NGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD  566 (647)
T ss_pred             cEEEECC----------CCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccC
Confidence            9999999          8999999999999996 899999999999999999999999999976    457789998743


Q ss_pred             HHHHHHHHcCCCcCCccccCh----HHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          459 EVLMAAKRLSIVHADASELSK----EKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .             .....+.    ++++++++++|..++     .+++|.++++.+...+||+
T Consensus       567 ~-------------~~~~~~~~~l~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  612 (647)
T PTZ00237        567 Q-------------SNQSIDLNKLKNEINNIITQDIESLA-----VLRKIIIVNQLPKTKTGKI  612 (647)
T ss_pred             c-------------cccCCCHHHHHHHHHHHHHhhcCccc-----cCcEEEEcCCCCCCCCccE
Confidence            1             0012233    344555555565555     6689999999999999997

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-50  Score=430.16  Aligned_cols=327  Identities=24%  Similarity=0.318  Sum_probs=275.9

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe---cch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---TAV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~---~~~  158 (520)
                      .++++++++|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++...+.++..|+++++   +++
T Consensus       205 ~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~  284 (549)
T PRK07788        205 PPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDP  284 (549)
T ss_pred             CCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence            45788999999999999999999999999887777777888899999999999999998777778889999887   368


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|.+.++|+++..++........                                              
T Consensus       285 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  318 (549)
T PRK07788        285 EATLEDIAKHKATALVVVPVMLSRILDLGPEVLA----------------------------------------------  318 (549)
T ss_pred             HHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC----------------------------------------------
Confidence            8999999999999999999999887653211000                                              


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCC-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  316 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  316 (520)
                                                 ...+..+|.+++||+++++++ +.+.+.++.++++.||+||++......... 
T Consensus       319 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  371 (549)
T PRK07788        319 ---------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDL  371 (549)
T ss_pred             ---------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhh
Confidence                                       001223488999999999987 566677899999999999987654433221 


Q ss_pred             CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCc
Q 010017          317 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  396 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~  396 (520)
                      ....+++|+|.++++++|+|+ +++++++|+.|||+++|+.++.||+++++.  +.  .+|||+|||+|++++       
T Consensus       372 ~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~~--~~g~~~TGDl~~~~~-------  439 (549)
T PRK07788        372 AEAPGTVGRPPKGVTVKILDE-NGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--QI--IDGLLSSGDVGYFDE-------  439 (549)
T ss_pred             hhcCCCcccCCCCcEEEEECC-CcCCCCCCCeEEEEEeCCCccccccCCCcc--cc--cCCceecCceEEEcC-------
Confidence            234578999999999999995 588999999999999999999999999875  22  379999999999998       


Q ss_pred             cccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcC
Q 010017          397 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  472 (520)
Q Consensus       397 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  472 (520)
                         ||+++|.||.||+||. +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++|++.++              
T Consensus       440 ---~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------------  501 (549)
T PRK07788        440 ---DGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPG--------------  501 (549)
T ss_pred             ---CCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCC--------------
Confidence               8999999999999996 9999999999999999999999999998764    46788887653              


Q ss_pred             CccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          473 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       473 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                        ...+.+++++++++.|+.|+     .+++|.++++.+...+||+
T Consensus       502 --~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  540 (549)
T PRK07788        502 --AALDEDAIKDYVRDNLARYK-----VPRDVVFLDELPRNPTGKV  540 (549)
T ss_pred             --CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeCCCCCCCCcCE
Confidence              34577899999999999987     4578999999999999997

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.9e-50  Score=423.90  Aligned_cols=335  Identities=17%  Similarity=0.129  Sum_probs=261.8

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----c
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----A  157 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~  157 (520)
                      +++|+++|+|||||||.||||++||+|+..+.......+++.++|++++.+|++|.+++...+.++..|+++++.    +
T Consensus       117 ~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~  196 (499)
T PLN03051        117 PVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPL  196 (499)
T ss_pred             CccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCC
Confidence            568999999999999999999999999877665555667888899999999999999986667778999998764    4


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      +..+++.|+++++|++.++|+++..|........ .                                            
T Consensus       197 ~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~-~--------------------------------------------  231 (499)
T PLN03051        197 GRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM-E--------------------------------------------  231 (499)
T ss_pred             cHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc-c--------------------------------------------
Confidence            5789999999999999999999988754210000 0                                            


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHH---hCCeeeecccccccccceeccC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA---IGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~---~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                  ...+..+|.+++||++++++..++++.   +++++++.||+||++...+...
T Consensus       232 ----------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  283 (499)
T PLN03051        232 ----------------------------GLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST  283 (499)
T ss_pred             ----------------------------cCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc
Confidence                                        001112388999999999887555544   3478999999999865433222


Q ss_pred             -CCCCCccccccCcCCeEEEEEeCCCCCcCCCC--CccEEEEecCCC--CccccCCchhhhcccCC--------CCcccc
Q 010017          315 -PTCNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQV--MQGYFKNPSATKQALDE--------DGWLNT  381 (520)
Q Consensus       315 -~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g--~~GEl~v~gp~v--~~GY~~~~~~t~~~f~~--------~gw~~T  381 (520)
                       ......+++|+|.++++++|+| ++++++++|  +.|||+++||.+  +.|||+++ .++..++.        .+||+|
T Consensus       284 ~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~T  361 (499)
T PLN03051        284 LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRH  361 (499)
T ss_pred             ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeec
Confidence             1223457899999999999999 468889988  589999999976  58999865 34332311        127899


Q ss_pred             CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhc-CcccceEEEEeCCCc-----eeEEEE--
Q 010017          382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQR-----RPGAII--  453 (520)
Q Consensus       382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~-~p~V~~~~Vvg~~~~-----~~~a~v--  453 (520)
                      ||+|++|+          ||+++|+||+||+||. +|+||+|.|||++|.+ ||.|.+|+|+|.+++     .+.|+|  
T Consensus       362 GDlg~~d~----------dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~  430 (499)
T PLN03051        362 GDIMKRTP----------GGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVL  430 (499)
T ss_pred             CCeEEECC----------CCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEc
Confidence            99999999          8999999999999996 9999999999999996 999999999998763     456777  


Q ss_pred             -EcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          454 -VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       454 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                       +++++.               ...+.+++++++++.+.....+. .++.+|.++++.+...+||+
T Consensus       431 ~v~~~~~---------------~~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~v~~lP~t~~GKi  480 (499)
T PLN03051        431 GEEKKGF---------------DQARPEALQKKFQEAIQTNLNPL-FKVSRVKIVPELPRNASNKL  480 (499)
T ss_pred             ceecccc---------------cccchHHHHHHHHHHHHhhcCCc-cCCceEEEcCCCCCCCCccH
Confidence             554330               13466788888888877654322 25667999999999999986

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=5e-50  Score=432.44  Aligned_cols=387  Identities=16%  Similarity=0.187  Sum_probs=292.6

Q ss_pred             HHHHHHHhccCC-CceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017           13 FNRIAETLCSKA-AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY   91 (520)
Q Consensus        13 ~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~   91 (520)
                      .+.+.+++...+ .++.+++++.......   ........+++++......             .......++|+++|+|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~a~il~  243 (625)
T TIGR02188       180 KAIVDEALEKCPVSVEHVLVVRRTGNPVP---WVEGRDVWWHDLMAKASAY-------------CEPEPMDSEDPLFILY  243 (625)
T ss_pred             HHHHHHHHHhCCCCccEEEEEcCCCCCcC---ccccccccHHHHHhhcCCC-------------CCceecCCCCceEEEe
Confidence            345555555566 6777777653221100   0011124566665432110             1123457899999999


Q ss_pred             cCCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHH
Q 010017           92 TSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLK  162 (520)
Q Consensus        92 TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~  162 (520)
                      ||||||.||||++||+++..... .....+++.++|++++.+|++|+++... .+.++..|+++++.       ++..++
T Consensus       244 TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~  323 (625)
T TIGR02188       244 TSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFW  323 (625)
T ss_pred             cCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHH
Confidence            99999999999999999865433 3445568889999999999999988754 56678999998763       478899


Q ss_pred             HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017          163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  242 (520)
Q Consensus       163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (520)
                      +.|+++++|++.++|+++..+.+.......                                                  
T Consensus       324 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--------------------------------------------------  353 (625)
T TIGR02188       324 EIIEKHKVTIFYTAPTAIRALMRLGDEWVK--------------------------------------------------  353 (625)
T ss_pred             HHHHHhCCeEEEeCHHHHHHHHhcCCcccc--------------------------------------------------
Confidence            999999999999999999887543110000                                                  


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhC---CeeeecccccccccceeccCCC--
Q 010017          243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG---VKVQVGYGLTESSPVIAARRPT--  316 (520)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--  316 (520)
                                             ...+..+|.+++||+++++++. .+.+.++   +++++.||+||+++.++...+.  
T Consensus       354 -----------------------~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~  410 (625)
T TIGR02188       354 -----------------------KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGAT  410 (625)
T ss_pred             -----------------------cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCC
Confidence                                   0012234899999999998874 4455564   7899999999998765543322  


Q ss_pred             CCCccccccCcCCeEEEEEeCCCCCcCC-CCCccEEEEec--CCCCccccCCchhhhcccC--CCCccccCceeeeccCC
Q 010017          317 CNVLGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~-~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~--~~gw~~TGDlg~~~~~~  391 (520)
                      ....+++|+|+++++++|+| ++|++++ +|+.|||+++|  |++++|||++|+.+.+.+.  .+|||+|||+|++++  
T Consensus       411 ~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~--  487 (625)
T TIGR02188       411 PTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDK--  487 (625)
T ss_pred             CcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcC--
Confidence            24568899999999999999 5688888 99999999999  6899999999998887763  378999999999999  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.++|+++++.        
T Consensus       488 --------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~--------  550 (625)
T TIGR02188       488 --------DGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY--------  550 (625)
T ss_pred             --------CCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC--------
Confidence                    8999999999999996 8999999999999999999999999998654    567888886541        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           ...+...+++++++++.|..++     .++.|.++++.+...|||+
T Consensus       551 -----~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sGKi  591 (625)
T TIGR02188       551 -----EPDDELRKELRKHVRKEIGPIA-----KPDKIRFVPGLPKTRSGKI  591 (625)
T ss_pred             -----CCCHHHHHHHHHHHHhhcCCCc-----cCcEEEECCCCCCCCCccc
Confidence                 0001123567777777777766     5688999999999999997

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-49  Score=430.02  Aligned_cols=387  Identities=16%  Similarity=0.197  Sum_probs=291.6

Q ss_pred             HHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEec
Q 010017           13 FNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYT   92 (520)
Q Consensus        13 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T   92 (520)
                      .+.+.+.+..++.++.+++++.......   ........++++.......             .+.....++|+++|+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~i~~T  253 (637)
T PRK00174        190 KANVDEALANCPSVEKVIVVRRTGGDVD---WVEGRDLWWHELVAGASDE-------------CEPEPMDAEDPLFILYT  253 (637)
T ss_pred             HHHHHHHHHhCCCccEEEEEcCCCCCcC---cCCCCcccHHHHHhhcCCC-------------CCccccCCCCcEEEEEC
Confidence            3445555555667777777653221110   0011224566665421110             11234567999999999


Q ss_pred             CCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHHH
Q 010017           93 SGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLKD  163 (520)
Q Consensus        93 SGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~~  163 (520)
                      |||||.||||++||++++.+.. .....+++.++|++++.+|++|+.+... .+.++..|+++++.       ++..+++
T Consensus       254 SGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~  333 (637)
T PRK00174        254 SGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWE  333 (637)
T ss_pred             CCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHH
Confidence            9999999999999999865443 3344567888999999999999988764 56678899998763       4788999


Q ss_pred             HHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHH
Q 010017          164 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  243 (520)
Q Consensus       164 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (520)
                      .|+++++|++.++|+++..+++......                                                    
T Consensus       334 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------------------  361 (637)
T PRK00174        334 VIDKHKVTIFYTAPTAIRALMKEGDEHP----------------------------------------------------  361 (637)
T ss_pred             HHHhcCCeEEeecHHHHHHHHhcCCccc----------------------------------------------------
Confidence            9999999999999999988765311000                                                    


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhC---CeeeecccccccccceeccCCC--C
Q 010017          244 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG---VKVQVGYGLTESSPVIAARRPT--C  317 (520)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~  317 (520)
                                           ....+..+|.+++||+++++++. .+.+.++   +++++.||+||++.......+.  .
T Consensus       362 ---------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  420 (637)
T PRK00174        362 ---------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATP  420 (637)
T ss_pred             ---------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCC
Confidence                                 00012234889999999998874 4445565   7899999999998765543322  2


Q ss_pred             CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhcccC--CCCccccCceeeeccCCCC
Q 010017          318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       318 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~--~~gw~~TGDlg~~~~~~~~  393 (520)
                      ...+++|+|+++++++|+| +++++++.|+.|||+++|  |++++|||++|+.+.+.+.  .+|||+|||+|++++    
T Consensus       421 ~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----  495 (637)
T PRK00174        421 LKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDE----  495 (637)
T ss_pred             cCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcC----
Confidence            3457899999999999999 468899999999999999  6999999999998887762  479999999999998    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.++|++.++.          
T Consensus       496 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~----------  558 (637)
T PRK00174        496 ------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGE----------  558 (637)
T ss_pred             ------CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCC----------
Confidence                  8999999999999996 8999999999999999999999999998653    577888886531          


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                         .......+++++++++.|+.|+     .++.|.++++.+...|||+
T Consensus       559 ---~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  599 (637)
T PRK00174        559 ---EPSDELRKELRNWVRKEIGPIA-----KPDVIQFAPGLPKTRSGKI  599 (637)
T ss_pred             ---CCCHHHHHHHHHHHHhhcCCcc-----CCCEEEEcCCCCCCCCcch
Confidence               0001114567777777777776     5578999999999999987

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.6e-50  Score=435.73  Aligned_cols=333  Identities=16%  Similarity=0.190  Sum_probs=273.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHH-HHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-  156 (520)
                      .++++|+++|+|||||||.||||++||++++. ....+...+++.++|++++.+|++|+++... .+.++..|+++++. 
T Consensus       271 ~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~  350 (666)
T PLN02654        271 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE  350 (666)
T ss_pred             ecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEEC
Confidence            35789999999999999999999999999764 3445566778899999999999999998765 46678999998864 


Q ss_pred             ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                            ++..+++.|+++++|++.++|+++..|.+.......                                      
T Consensus       351 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--------------------------------------  392 (666)
T PLN02654        351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVT--------------------------------------  392 (666)
T ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccc--------------------------------------
Confidence                  467899999999999999999999887643110000                                      


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---Ceeeeccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTES  306 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~  306 (520)
                                                         ...+..+|.++++|+++++++ +.+.+.+|   +++.+.||+||+
T Consensus       393 -----------------------------------~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~  437 (666)
T PLN02654        393 -----------------------------------RHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET  437 (666)
T ss_pred             -----------------------------------cCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccccc
Confidence                                               001122389999999999887 55666777   789999999999


Q ss_pred             ccceeccCCC--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhcccC--CCCccc
Q 010017          307 SPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLN  380 (520)
Q Consensus       307 ~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~--~~gw~~  380 (520)
                      ++......+.  ....+++|.|.||++++|+|+ +|++++.|+.|||++++  |++++|||+|++.+.+++.  .+|||+
T Consensus       438 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~-~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~  516 (666)
T PLN02654        438 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYF  516 (666)
T ss_pred             CCeeeccCCCCCCCCCCccCCCCCCceEEEECC-CCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEE
Confidence            8765544332  245689999999999999994 57888989999999998  7899999999999987753  279999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  456 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~  456 (520)
                      |||+|++|+          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+++|+|.+++    .+.++|++.
T Consensus       517 TGD~~~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~  585 (666)
T PLN02654        517 SGDGCSRDK----------DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLV  585 (666)
T ss_pred             eCceEEECC----------CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEEC
Confidence            999999999          8999999999999996 8999999999999999999999999998764    567888887


Q ss_pred             hHHHHHHHHHcCCCcCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ++                ...+   .++++++++++|..++     .++.|.++++.+.+.|||+
T Consensus       586 ~~----------------~~~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  629 (666)
T PLN02654        586 EG----------------VPYSEELRKSLILTVRNQIGAFA-----APDKIHWAPGLPKTRSGKI  629 (666)
T ss_pred             CC----------------CCCCHHHHHHHHHHHHHhCCCCc-----CCCEEEECCCCCCCCCcCc
Confidence            53                1122   2467777788877777     4578999999999999986

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=7.9e-50  Score=425.37  Aligned_cols=333  Identities=27%  Similarity=0.414  Sum_probs=275.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCC-CCCcEEEEEcChhhHHHHHHh-hhhhhcCeeE
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPA-ENGDKFLSMLPPWHVYERACG-YFIFSRGIEL  153 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~-~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~  153 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+..+..    .... ...+++++.+|++|++++... +.++..|+++
T Consensus       194 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~  273 (560)
T PLN02574        194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTI  273 (560)
T ss_pred             CCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEE
Confidence            346799999999999999999999999999887665542    1222 356889999999999998764 4456788888


Q ss_pred             Eec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          154 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       154 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                      ++.   ++..+++.|+++++|++.++|+++..+.+......                                       
T Consensus       274 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------  314 (560)
T PLN02574        274 VVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC---------------------------------------  314 (560)
T ss_pred             EEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccc---------------------------------------
Confidence            774   67889999999999999999999988765311000                                       


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  308 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~  308 (520)
                                                         ...+..+|.+++||++++... +++.+.+ ++++++.||+||++.
T Consensus       315 -----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  359 (560)
T PLN02574        315 -----------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA  359 (560)
T ss_pred             -----------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCc
Confidence                                               001122388899999999886 6666777 689999999999986


Q ss_pred             ceeccC--CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017          309 VIAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       309 ~~~~~~--~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                      +.+...  ......+++|++.|+++++|+|+++++++++|+.|||+++|++++.|||++|+.|++.|+.+|||+|||+|+
T Consensus       360 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~  439 (560)
T PLN02574        360 VGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAY  439 (560)
T ss_pred             eeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEE
Confidence            554322  122456789999999999999988899999999999999999999999999999999998899999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          +|++++.||+||+||+ +|++|+|.|||++|.+||.|.+++|+|.+++    .+.++|+++++    
T Consensus       440 ~~~----------~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~----  504 (560)
T PLN02574        440 FDE----------DGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQG----  504 (560)
T ss_pred             EEC----------CCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCC----
Confidence            998          8999999999999997 8999999999999999999999999998764    35678877643    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                  ...+.+++.++++++|..|+     .++.|.++++.+...+||+
T Consensus       505 ------------~~~~~~~l~~~~~~~l~~~~-----~p~~v~~v~~iP~t~~GKi  543 (560)
T PLN02574        505 ------------STLSQEAVINYVAKQVAPYK-----KVRKVVFVQSIPKSPAGKI  543 (560)
T ss_pred             ------------CCCCHHHHHHHHHHhccCcc-----cCcEEEEeeccCCCCcchh
Confidence                        33566889999999999888     4578999999999999986

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.3e-49  Score=426.97  Aligned_cols=341  Identities=18%  Similarity=0.180  Sum_probs=271.1

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHH-HHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ..++|+++|+|||||||.||||+++|+++... .......+++.++|++++.+|+.|++++.. .+.++..|+++++.  
T Consensus       229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~  308 (628)
T TIGR02316       229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG  308 (628)
T ss_pred             cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence            56899999999999999999999999997543 444556678899999999999999988754 56678999998873  


Q ss_pred             -----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          157 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       157 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                           ++..+++.|+++++|++.++|+++..|.+......                                        
T Consensus       309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------  348 (628)
T TIGR02316       309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWL----------------------------------------  348 (628)
T ss_pred             CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc----------------------------------------
Confidence                 35788999999999999999999887644210000                                        


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCCeeeecccccccccce
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVI  310 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~  310 (520)
                                                       ....+..+|.+++||+++++++.+ +.+.+|.++++.||+||++..+
T Consensus       349 ---------------------------------~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  395 (628)
T TIGR02316       349 ---------------------------------RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV  395 (628)
T ss_pred             ---------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence                                             001122348999999999988754 4556799999999999998544


Q ss_pred             eccCC----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC---CCCccccCCchhhhccc---CCCCccc
Q 010017          311 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQAL---DEDGWLN  380 (520)
Q Consensus       311 ~~~~~----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp---~v~~GY~~~~~~t~~~f---~~~gw~~  380 (520)
                      +....    .....+++|+|+|+++++|+|++++++++.|+.|||+++||   +++.|||++++.+.+.+   ..++||+
T Consensus       396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (628)
T TIGR02316       396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYS  475 (628)
T ss_pred             ecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEE
Confidence            33221    12345789999999999999977899999999999999998   57899999998887654   2478999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  456 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~  456 (520)
                      |||+|++|+          ||+++|+||.||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.++|+++
T Consensus       476 TGD~g~~d~----------dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~  544 (628)
T TIGR02316       476 SFDWGIRDE----------DGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILK  544 (628)
T ss_pred             CCceEEEcC----------CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEc
Confidence            999999999          8999999999999996 8999999999999999999999999998664    466888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ++..        ...........++|+++++++|+.|+     .+++|.++++.+...|||+
T Consensus       545 ~~~~--------~~~~~~~~~~~~~i~~~~~~~L~~~~-----~P~~v~~v~~lP~t~sGKi  593 (628)
T TIGR02316       545 ESDS--------AGDAHDPHAVETGMMDCVVRQLGAVA-----RPARVYFVAALPKTRSGKL  593 (628)
T ss_pred             CCcc--------cccccchHHHHHHHHHHHHHhcCCCc-----CCCEEEEcCCCCCCCchHH
Confidence            4310        00000011234678888888888877     5578999999999999997

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-49  Score=423.16  Aligned_cols=335  Identities=21%  Similarity=0.296  Sum_probs=275.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+........+++.++|++++..|++|.++... .+.++..|+++++.  
T Consensus       201 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~  280 (570)
T PRK04319        201 WTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG  280 (570)
T ss_pred             ccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC
Confidence            346789999999999999999999999999988877777788899999999999999988655 55678899988763  


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+.+.......                                          
T Consensus       281 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------  318 (570)
T PRK04319        281 RFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK------------------------------------------  318 (570)
T ss_pred             CCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccc------------------------------------------
Confidence              578999999999999999999999887542100000                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++. .+.+.+|.++++.||+||++..++..
T Consensus       319 -------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~  367 (570)
T PRK04319        319 -------------------------------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIAN  367 (570)
T ss_pred             -------------------------------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEec
Confidence                                           0012234889999999999874 45556899999999999998765544


Q ss_pred             CCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          314 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       314 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      .+. ....+++|+|.|+++++|+|+ ++.++++|+.|||+++|  |+++.|||++|+.|++.|. +|||+|||+|++++ 
T Consensus       368 ~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~-  444 (570)
T PRK04319        368 YPAMDIKPGSMGKPLPGIEAAIVDD-QGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDE-  444 (570)
T ss_pred             CCCCCCCCCcCcCCCCCCEEEEECC-CCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECC-
Confidence            332 234688999999999999995 57788999999999997  8999999999999999996 89999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               +|+++++||+||+|+. +|++|+|.+||+++.+||.|.+++|+|.+++    .+.+++++.++.       
T Consensus       445 ---------~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~-------  507 (570)
T PRK04319        445 ---------DGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY-------  507 (570)
T ss_pred             ---------CeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC-------
Confidence                     8999999999999996 8999999999999999999999999998764    456777765430       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            ...+...++++++++++|+.|+     ++++|.++++.+...+||+
T Consensus       508 ------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKv  548 (570)
T PRK04319        508 ------EPSEELKEEIRGFVKKGLGAHA-----APREIEFKDKLPKTRSGKI  548 (570)
T ss_pred             ------CCCHHHHHHHHHHHHHhccccc-----CCcEEEEeCCCCCCCchhh
Confidence                  0001123577788888887777     5578999999999999986

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=5.4e-49  Score=419.23  Aligned_cols=341  Identities=26%  Similarity=0.321  Sum_probs=270.1

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---c
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~  157 (520)
                      ..++++++|+|||||||.||||++||+++..+.......+++.++|++++++|++|++++...+.++..|+++++.   +
T Consensus       169 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~  248 (563)
T PLN02860        169 WAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFD  248 (563)
T ss_pred             CCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCC
Confidence            3679999999999999999999999999988777666677888999999999999999987777788999988773   6


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      +..+++.|+++++|++.++|+++..+........                                              
T Consensus       249 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------------  282 (563)
T PLN02860        249 AKAALQAIKQHNVTSMITVPAMMADLISLTRKSM----------------------------------------------  282 (563)
T ss_pred             HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh----------------------------------------------
Confidence            7889999999999999999999988865321100                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceeccCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                 ....+..+|.+++||+++++.+ +.+.+.+ ++++++.||+||++..++....
T Consensus       283 ---------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  335 (563)
T PLN02860        283 ---------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTL  335 (563)
T ss_pred             ---------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccc
Confidence                                       0011223488999999999987 5566666 7899999999998765443221


Q ss_pred             CC-----------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcc
Q 010017          316 TC-----------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA  372 (520)
Q Consensus       316 ~~-----------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~  372 (520)
                      ..                       ....++|+|+|+++++|++++      +|+.|||+++||+++.|||++|+.|++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~  409 (563)
T PLN02860        336 HDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASV  409 (563)
T ss_pred             cccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchh
Confidence            10                       112368999999999999854      5889999999999999999999999999


Q ss_pred             cCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----e
Q 010017          373 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----R  448 (520)
Q Consensus       373 f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~  448 (520)
                      |..+|||+|||+|++++          ||+++|+||+||+||. +|++|+|.|||+++.+||.|.+|+|+|.+++    .
T Consensus       410 ~~~~g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~  478 (563)
T PLN02860        410 LSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEM  478 (563)
T ss_pred             ccCCCeEEccceEEEcC----------CCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCce
Confidence            98899999999999998          8999999999999996 9999999999999999999999999998664    5


Q ss_pred             eEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEe-cCCCCcCCCcc
Q 010017          449 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVV-DEPFTVNFLCL  518 (520)
Q Consensus       449 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~-~~~~~~~~g~l  518 (520)
                      +.++|++.++.  .+..............+.+++++++++ .|+.|+     .++.|.++ ++.+...+||+
T Consensus       479 ~~a~v~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-----~P~~~~~~~~~lP~t~~GKi  543 (563)
T PLN02860        479 VVACVRLRDGW--IWSDNEKENAKKNLTLSSETLRHHCREKNLSRFK-----IPKLFVQWRKPFPLTTTGKI  543 (563)
T ss_pred             EEEEEEECCcc--ccccccchhhcccccccHHHHHHHHhhCcccccc-----cceEEEEEecCCCCCcccch
Confidence            67888876531  000000000000123456778888887 488777     45667665 55777788986

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=6.2e-48  Score=431.67  Aligned_cols=429  Identities=16%  Similarity=0.134  Sum_probs=315.7

Q ss_pred             cEEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCC--CCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccC
Q 010017            2 CVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKS--SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE   79 (520)
Q Consensus         2 ~~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (520)
                      ++++|+. .+.++++.++..  +.+++||++++..+  ........++..++|+++++.+.....+           ...
T Consensus       528 akvVfv~-~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~-----------~~~  593 (1452)
T PTZ00297        528 IKVVFAD-RNSVAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVP-----------LKE  593 (1452)
T ss_pred             CcEEEEc-hhHHHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCcc-----------ccC
Confidence            4566664 666778777643  47999999864211  0000001134568899999876421110           112


Q ss_pred             CCCCCCEEEEEe---cCCCCCCchhhhhchHHHHHHHHHhhhhc---CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeE
Q 010017           80 TIGSDDIATYVY---TSGTTGNPKGVMLTHKNLLHQIRSLYDIV---PAENGDKFLSMLPPWHVYERACGYFIFSRGIEL  153 (520)
Q Consensus        80 ~~~~~d~a~i~~---TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~  153 (520)
                      .++++|++.|+|   ||||||.||||++||+|+++++.......   ...++|++++++|++|+++....+.++..|+++
T Consensus       594 ~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I  673 (1452)
T PTZ00297        594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAV  673 (1452)
T ss_pred             CCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEE
Confidence            347899999996   99999999999999999999887765422   346789999999999999987777788999999


Q ss_pred             EecchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          154 MYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       154 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                      .+++++.++++|++++||+++++|++|+.+...+.+.....+.+.+.+..++........   .  .+            
T Consensus       674 ~~~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~---~--~g------------  736 (1452)
T PTZ00297        674 ATVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLI---N--IH------------  736 (1452)
T ss_pred             EeCCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---h--cC------------
Confidence            888999999999999999999999999999998877766555666655555544321100   0  00            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCC-ceeEEecCC--CCChhHHHHHHHhCCeeeecccccccccce
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGG--SLPMHIDLFYEAIGVKVQVGYGLTESSPVI  310 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~~~~gg~--~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~  310 (520)
                                       .+...++++++|+++++.||. +|.+++||+  +++     +....++++..+||+||+.   
T Consensus       737 -----------------~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~~i~i~~g~glTE~~---  791 (1452)
T PTZ00297        737 -----------------RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLEHISVCYVPCLREVF---  791 (1452)
T ss_pred             -----------------CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhCCceEEEecceEEee---
Confidence                             112336688999999999985 688888874  444     3333367899999999953   


Q ss_pred             eccCCCCCCccccccCcCCeEEEEEeC-CCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          311 AARRPTCNVLGSVGHPINHTEIKIVDA-ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~-~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      +.+.+....  ..|.|+|+++++|.+. +.+.   .+..|||+++       |++||+.|++.+  +||+         +
T Consensus       792 ~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~  848 (1452)
T PTZ00297        792 FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------R  848 (1452)
T ss_pred             eecCCCCcc--cCCeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------c
Confidence            334443332  2399999999999874 2222   1236999995       569999999854  6775         3


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHH-HHHHHcC
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL-MAAKRLS  468 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~-~~~~~~~  468 (520)
                                ||+|+|+||+||+||+++|++|+|+.||+++..+|.|.+++|+|++++.++|+|+|+++.+. +|+++++
T Consensus       849 ----------dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvALVvpd~e~l~~~wa~~~g  918 (1452)
T PTZ00297        849 ----------DRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIAIVSPNRDTVEFEWRQSHC  918 (1452)
T ss_pred             ----------CCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEEEEEeCHHHHHHHHHHHcC
Confidence                      79999999999999999999999999999999999999999999998889999999999999 9999998


Q ss_pred             CCcC--CccccChHHHH----HHHHH---HHHHHhccCC-CccccEEEecCCCCcCCCccc
Q 010017          469 IVHA--DASELSKEKTI----SLLYG---ELRKWTSKCS-FQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       469 ~~~~--~~~~~~~~~~~----~~~~~---~l~~~~~~~~-~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      +...  ....++.+++.    +.+++   .+.+.+.... +++++|.|++++||+|||+||
T Consensus       919 i~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLT  979 (1452)
T PTZ00297        919 MGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLT  979 (1452)
T ss_pred             CCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCC
Confidence            7532  11112323332    22333   3555555333 556679999999999999997

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.7e-48  Score=412.74  Aligned_cols=329  Identities=25%  Similarity=0.385  Sum_probs=275.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+++.. .+.++..|+++++.  
T Consensus       193 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~  272 (547)
T PRK13295        193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDI  272 (547)
T ss_pred             CCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCC
Confidence            346799999999999999999999999999988887777888899999999999999998765 45678899998874  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|.+.++|+++..+.......                                             
T Consensus       273 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~---------------------------------------------  307 (547)
T PRK13295        273 WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES---------------------------------------------  307 (547)
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc---------------------------------------------
Confidence             5788999999999999999999988775431110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                    ...+..+|.+++||+++++.+ +.+.+.+++++++.||+||++...+...
T Consensus       308 ------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        308 ------------------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             ------------------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence                                          011223488999999999988 5556678999999999999987655443


Q ss_pred             CC--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017          315 PT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       315 ~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~  392 (520)
                      ..  .....++|+|.++++++|+|+ ++++++.|+.|||+++|++++.||+++|+.|++.  .+|||+|||+|++++   
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~---  431 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDA---  431 (547)
T ss_pred             CCcchhccCccccccCCcEEEEECC-CCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcC---
Confidence            21  223468899999999999995 5789999999999999999999999999999876  478999999999998   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  468 (520)
                             +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|++...          
T Consensus       432 -------~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~----------  493 (547)
T PRK13295        432 -------DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG----------  493 (547)
T ss_pred             -------CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC----------
Confidence                   8999999999999996 9999999999999999999999999997643    57788887643          


Q ss_pred             CCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          469 IVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            ...+.+++++++++ .++.|+     .+++|.++++.+...+||+
T Consensus       494 ------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgK~  533 (547)
T PRK13295        494 ------QSLDFEEMVEFLKAQKVAKQY-----IPERLVVRDALPRTPSGKI  533 (547)
T ss_pred             ------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeccCCCCCCccc
Confidence                  23455678888876 577776     5578999999999999997

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-48  Score=410.76  Aligned_cols=335  Identities=25%  Similarity=0.363  Sum_probs=283.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||||++||+++..++......+++.++|++++.+|++|++++.. .+.++..|+++++.  
T Consensus       186 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~  265 (546)
T PRK08314        186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR  265 (546)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC
Confidence            456899999999999999999999999999998888777788899999999999999999866 45678999999884  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|++.++|.++..+.......                                             
T Consensus       266 ~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~---------------------------------------------  300 (546)
T PRK08314        266 WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLA---------------------------------------------  300 (546)
T ss_pred             CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCcc---------------------------------------------
Confidence             5678899999999999999999887764320000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                    ...+..+|.+++||+++++.+ +++.+.+++++++.||+||++.......
T Consensus       301 ------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  350 (546)
T PRK08314        301 ------------------------------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNP  350 (546)
T ss_pred             ------------------------------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCC
Confidence                                          000111378899999999987 5666778999999999999987766555


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC---CCccccCceeeeccCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGDIGWIAPHH  391 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~---~gw~~TGDlg~~~~~~  391 (520)
                      ......+++|.|.++++++|+|++++++++.|+.|||+++|++++.||+++++.|++.|..   ++||+|||+|++++  
T Consensus       351 ~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~--  428 (546)
T PRK08314        351 PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE--  428 (546)
T ss_pred             CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC--
Confidence            4444567899999999999999888999999999999999999999999999999988742   46999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|++++.||.||+|+. +|++|+|.|||+++.++|.|.+++|++.++    +.+.++++++.+.        
T Consensus       429 --------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--------  491 (546)
T PRK08314        429 --------EGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA--------  491 (546)
T ss_pred             --------CCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCC--------
Confidence                    8999999999999996 899999999999999999999999999865    3577888887531        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                            ....+.++++++++++|+.|+     .+++|.++++.+...|||+.
T Consensus       492 ------~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv~  532 (546)
T PRK08314        492 ------RGKTTEEEIIAWAREHMAAYK-----YPRIVEFVDSLPKSGSGKIL  532 (546)
T ss_pred             ------CCCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCcccee
Confidence                  012456889999999999887     55889999999999999973

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.5e-48  Score=409.15  Aligned_cols=327  Identities=22%  Similarity=0.318  Sum_probs=272.6

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe---cch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---TAV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~---~~~  158 (520)
                      .+++.++++|||||||.||||++||+++......+...+....+|++++.+|++|++++...+.++..|+++++   +++
T Consensus       194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~  273 (537)
T PRK13382        194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDP  273 (537)
T ss_pred             CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCH
Confidence            46889999999999999999999999988877777777778889999999999999998777777888999887   468


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.|+++++|++.++|+++..+.........                                              
T Consensus       274 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  307 (537)
T PRK13382        274 EATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN----------------------------------------------  307 (537)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcc----------------------------------------------
Confidence            8899999999999999999999887542110000                                              


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCC-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  316 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  316 (520)
                                                 ...+..+|.+++||+++++++ ..+.+.+|.++++.||+||++.+++..... 
T Consensus       308 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  360 (537)
T PRK13382        308 ---------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL  360 (537)
T ss_pred             ---------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHh
Confidence                                       000112388999999999887 667777899999999999998766543321 


Q ss_pred             CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCc
Q 010017          317 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  396 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~  396 (520)
                      ....+++|+|+++++++|+|+ ++++++.|+.|||+++||+++.||+  ++.+.. | .+|||+|||++++++       
T Consensus       361 ~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~-------  428 (537)
T PRK13382        361 RAAPDTAGRPAEGTEIRILDQ-DFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDE-------  428 (537)
T ss_pred             ccCCCCccccCcCcEEEEECC-CCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeC-------
Confidence            234578999999999999995 5789999999999999999999998  555554 3 279999999999999       


Q ss_pred             cccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcC
Q 010017          397 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  472 (520)
Q Consensus       397 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  472 (520)
                         +|+++|.||+||+||. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|++.++              
T Consensus       429 ---~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------------  490 (537)
T PRK13382        429 ---NGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG--------------  490 (537)
T ss_pred             ---CCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCC--------------
Confidence               8999999999999996 9999999999999999999999999998765    36788887643              


Q ss_pred             CccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          473 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       473 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                        ...+.+++++++++.|+.|+.     +..|.++++.+...+||+
T Consensus       491 --~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~t~~gK~  529 (537)
T PRK13382        491 --ASATPETLKQHVRDNLANYKV-----PRDIVVLDELPRGATGKI  529 (537)
T ss_pred             --CCCCHHHHHHHHHHhccCCCC-----CcEEEEeccCCCCCCCCC
Confidence              235678899999999998884     467888888888899986

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-48  Score=414.75  Aligned_cols=328  Identities=22%  Similarity=0.335  Sum_probs=266.2

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe----
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY----  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~----  155 (520)
                      ...++++++|+|||||||.||||++||+++.+.+......+++.++|+.++.+|++|++++.       .|+++++    
T Consensus       170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~g~~~~~~~~~  242 (552)
T PRK09274        170 DLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPA-------LGMTSVIPDMD  242 (552)
T ss_pred             CCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhhh-------hCCeEEecCcc
Confidence            34679999999999999999999999999998888877888899999999999999876643       3444433    


Q ss_pred             ------cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          156 ------TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       156 ------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                            .++..+++.|+++++|+++++|+++..+........                                      
T Consensus       243 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  284 (552)
T PRK09274        243 PTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG--------------------------------------  284 (552)
T ss_pred             cccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC--------------------------------------
Confidence                  356889999999999999999999988865321100                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh--CCeeeeccccccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTES  306 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~--g~~v~~~YG~TE~  306 (520)
                                                           ..+..+|.+++||+++++.+ +.+.+.+  |+++++.||+||+
T Consensus       285 -------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  327 (552)
T PRK09274        285 -------------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEA  327 (552)
T ss_pred             -------------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccccccc
Confidence                                                 01122388999999999987 5666667  5799999999999


Q ss_pred             ccceeccCCC----------CCCccccccCcCCeEEEEEeCC--------CCCcCCCCCccEEEEecCCCCccccCCchh
Q 010017          307 SPVIAARRPT----------CNVLGSVGHPINHTEIKIVDAE--------TNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  368 (520)
Q Consensus       307 ~~~~~~~~~~----------~~~~~~~G~~~~~~~v~ivd~~--------~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~  368 (520)
                      +++++.....          .....++|+|+|+++++|+|++        +++++++|+.|||+++||+++.|||++|+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~  407 (552)
T PRK09274        328 LPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEA  407 (552)
T ss_pred             ceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHH
Confidence            8765433211          1122378999999999999853        467899999999999999999999999999


Q ss_pred             hhccc--CCCC--ccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeC
Q 010017          369 TKQAL--DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  444 (520)
Q Consensus       369 t~~~f--~~~g--w~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~  444 (520)
                      |...|  +.+|  ||+|||+|++++          ||++++.||.||+|+. +|++|+|.|||++|.+||.|.+|+|+|.
T Consensus       408 t~~~~~~~~~g~~w~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~  476 (552)
T PRK09274        408 TRLAKIPDGQGDVWHRMGDLGYLDA----------QGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGV  476 (552)
T ss_pred             hhhhhcccCCCCcEEEcCCEEEEcc----------CCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEe
Confidence            98876  3356  999999999999          8999999999999996 8999999999999999999999999998


Q ss_pred             CCc---eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCc--CCCcc
Q 010017          445 DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV--NFLCL  518 (520)
Q Consensus       445 ~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~--~~g~l  518 (520)
                      +++   .+.++|++.++                ...+.+++.+++++.++.+..+  ..+++|.++++.+..  .|||+
T Consensus       477 ~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~~lP~t~~~~GKi  537 (552)
T PRK09274        477 GVPGAQRPVLCVELEPG----------------VACSKSALYQELRALAAAHPHT--AGIERFLIHPSFPVDIRHNAKI  537 (552)
T ss_pred             CCCCCceEEEEEEccCc----------------cccchHHHhhhhHHHHHhcCCC--cceeEEeccCCCCccccccccc
Confidence            654   46677777643                2345567888888888887533  467889999988866  68987

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=7.6e-48  Score=408.46  Aligned_cols=332  Identities=30%  Similarity=0.458  Sum_probs=276.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEE
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM  154 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~  154 (520)
                      ...++++++++|||||||.||||++||+++.........    .+++.++|++++.+|++|.+++.. .+.++..|++++
T Consensus       175 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  254 (537)
T PLN02246        175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAIL  254 (537)
T ss_pred             CCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEE
Confidence            346899999999999999999999999999877654432    456789999999999999999865 445688999998


Q ss_pred             ec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          155 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       155 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +.   ++..+++.|+++++|++.++|+++..+.+.....                                         
T Consensus       255 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------  293 (537)
T PLN02246        255 IMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-----------------------------------------  293 (537)
T ss_pred             EeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-----------------------------------------
Confidence            84   5788999999999999999999988775421000                                         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccc
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV  309 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~  309 (520)
                                                        ...+..+|.+++||+++++++ +.+.+.+ ++.+++.||+||++.+
T Consensus       294 ----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  339 (537)
T PLN02246        294 ----------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV  339 (537)
T ss_pred             ----------------------------------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcc
Confidence                                              001112388999999999887 5555666 6789999999999865


Q ss_pred             eeccCC-----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCce
Q 010017          310 IAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  384 (520)
Q Consensus       310 ~~~~~~-----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDl  384 (520)
                      ++....     .....+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||+++|+.+++.|+.+|||+|||+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~  419 (537)
T PLN02246        340 LAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDI  419 (537)
T ss_pred             cccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecce
Confidence            543211     123457899999999999999888999999999999999999999999999999999988999999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  460 (520)
                      |++++          +|++++.||.||+||. +|++|+|.+||+++.+||.|.+++|++.+++    .+.+++++.++  
T Consensus       420 ~~~~~----------~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--  486 (537)
T PLN02246        420 GYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG--  486 (537)
T ss_pred             EEEeC----------CCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC--
Confidence            99998          8999999999999997 8999999999999999999999999998654    46677777643  


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                    ...+.+++++++++.|+.|+     .+++|.++++.+...+||+
T Consensus       487 --------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~~P~t~~GKi  525 (537)
T PLN02246        487 --------------SEITEDEIKQFVAKQVVFYK-----RIHKVFFVDSIPKAPSGKI  525 (537)
T ss_pred             --------------CCCCHHHHHHHHHhhCcCcc-----ccceEEEeccCCCCCcchh
Confidence                          24567889999999888887     5578999999999999987

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-48  Score=420.31  Aligned_cols=338  Identities=21%  Similarity=0.273  Sum_probs=266.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|++++...+.++..|+++++.   
T Consensus       176 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~  255 (631)
T PRK07769        176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPA  255 (631)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChH
Confidence            34679999999999999999999999999998887777778888999999999999999998777777788887764   


Q ss_pred             ----chhhHHHHHhhhCC---cEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          157 ----AVRNLKDDLQRYQP---HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                          ++..+++.+.++++   +.+..+|+++..+......     +..                       +        
T Consensus       256 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~-----~~~-----------------------~--------  299 (631)
T PRK07769        256 AFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL-----PKD-----------------------G--------  299 (631)
T ss_pred             HHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc-----chh-----------------------c--------
Confidence                44567788888875   7888999887665431000     000                       0        


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh---CC---eeeeccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GV---KVQVGYG  302 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~---g~---~v~~~YG  302 (520)
                                                        .....+..+|.+++||+++++++ +++.+.+   |+   .++++||
T Consensus       300 ----------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG  345 (631)
T PRK07769        300 ----------------------------------EPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYG  345 (631)
T ss_pred             ----------------------------------ccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccc
Confidence                                              00001223488899999999886 5666665   33   5999999


Q ss_pred             ccccccceeccCCCC---------------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec
Q 010017          303 LTESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  355 (520)
Q Consensus       303 ~TE~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g  355 (520)
                      +||++..++......                           ....++|+|.++++++|+|++++++++.|+.|||+++|
T Consensus       346 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g  425 (631)
T PRK07769        346 MAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG  425 (631)
T ss_pred             hhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC
Confidence            999876555432211                           01257899999999999998889999999999999999


Q ss_pred             CCCCccccCCchhhhcccC-----------------CCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCc
Q 010017          356 SQVMQGYFKNPSATKQALD-----------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  418 (520)
Q Consensus       356 p~v~~GY~~~~~~t~~~f~-----------------~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  418 (520)
                      |+++.||||+|+.|+++|.                 .+|||+|||+|+++           ||+++|+||+||+||+ +|
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----------dG~l~i~GR~~d~Ik~-~G  493 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----------DGELYITGRVKDLVII-DG  493 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----------CCEEEEEcccccEEEE-CC
Confidence            9999999999999999884                 24899999999984           6999999999999997 99


Q ss_pred             eeeccHHHHHHHhc-Ccccce--EEEEeCCCc-----------------------eeEEEEEcChHHHHHHHHHcCCCcC
Q 010017          419 ENVEPLELEEAALR-SSLIRQ--IVVIGQDQR-----------------------RPGAIIVPDKEEVLMAAKRLSIVHA  472 (520)
Q Consensus       419 ~~v~p~eIE~~l~~-~p~V~~--~~Vvg~~~~-----------------------~~~a~vv~~~~~~~~~~~~~~~~~~  472 (520)
                      +||+|.|||++|.+ ||.|.+  |+|+|.+++                       .++++|++.++.             
T Consensus       494 ~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~-------------  560 (631)
T PRK07769        494 RNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGA-------------  560 (631)
T ss_pred             eeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcc-------------
Confidence            99999999999996 899998  999998772                       355677665430             


Q ss_pred             CccccChHHHHHHHHHHHHHH-hccCCCccccEEEec--CCCCcCCCcc
Q 010017          473 DASELSKEKTISLLYGELRKW-TSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       473 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                        ...+.+++.++++++|..+ +.    .++++.+++  +.+...+||+
T Consensus       561 --~~~~~~~l~~~~~~~l~~~~~~----~p~~~~~v~~~~lP~t~~GKi  603 (631)
T PRK07769        561 --HKLDPQPIADDIRAAIAVRHGV----TVRDVLLVPAGSIPRTSSGKI  603 (631)
T ss_pred             --ccccHHHHHHHHHHHHHHHcCC----CccEEEEECCCccccCCCcHH
Confidence              2356789999999999974 41    246788887  5778888886

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.8e-48  Score=410.38  Aligned_cols=331  Identities=28%  Similarity=0.460  Sum_probs=273.0

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC--CC-CCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AE-NGDKFLSMLPPWHVYERACG-YFIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~-~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~  155 (520)
                      ...++|+++|+|||||||.||||+++|+++..+.......+.  .. ..+++++.+|++|.+++... +..+..|.+.++
T Consensus       203 ~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~  282 (562)
T PRK05677        203 NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNIL  282 (562)
T ss_pred             CCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEE
Confidence            346799999999999999999999999999877665544433  33 34688999999999998653 445666776554


Q ss_pred             c----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          156 T----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       156 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      .    ++..+++.|+++++|.++++|+++..+.......                                         
T Consensus       283 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------  321 (562)
T PRK05677        283 ISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR-----------------------------------------  321 (562)
T ss_pred             ecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc-----------------------------------------
Confidence            2    4677899999999999999999987765421000                                         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccce
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  310 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~  310 (520)
                                                        ...+..+|.+++||+++++.+ +.+.+.+|+++++.||+||++..+
T Consensus       322 ----------------------------------~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  367 (562)
T PRK05677        322 ----------------------------------KLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVV  367 (562)
T ss_pred             ----------------------------------cCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcce
Confidence                                              000112389999999999887 556666799999999999998776


Q ss_pred             eccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      ..........+++|+|+++++++|+|+ +++++|.|+.|||+++||.++.||+++|+.|++.|..+|||+|||+|++++ 
T Consensus       368 ~~~~~~~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~-  445 (562)
T PRK05677        368 SVNPSQAIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE-  445 (562)
T ss_pred             eecCccCCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC-
Confidence            655444445678999999999999995 578999999999999999999999999999999998899999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               +|.++|.||+||+|+. +|++|+|.+||++|.+||.|.+++|+|.+++    .+.+++++.+.        
T Consensus       446 ---------~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~--------  507 (562)
T PRK05677        446 ---------DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG--------  507 (562)
T ss_pred             ---------CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCC--------
Confidence                     8999999999999997 7999999999999999999999999998754    45577776532        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ...+.+++++++++.|+.|+     .+++|.++++.+...|||+
T Consensus       508 --------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGKi  546 (562)
T PRK05677        508 --------ETLTKEQVMEHMRANLTGYK-----VPKAVEFRDELPTTNVGKI  546 (562)
T ss_pred             --------CCCCHHHHHHHHHHhhhhcc-----CCcEEEEeccCCCCCcccc
Confidence                    24567899999999999998     5578999999999999987

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=5.9e-47  Score=401.71  Aligned_cols=330  Identities=22%  Similarity=0.372  Sum_probs=275.2

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||||+++|+++.+.+......+++..+|++++++|++|.+++.. .+.++..|+++++.  
T Consensus       191 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~  270 (538)
T TIGR03208       191 RPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDI  270 (538)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCc
Confidence            346799999999999999999999999999988888777788889999999999999988765 45668889888774  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.+++++++++.++|+++..+........                                            
T Consensus       271 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------------------------------------  306 (538)
T TIGR03208       271 WNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------------------------------------  306 (538)
T ss_pred             cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------------------------------------
Confidence             67889999999999999999999887754221100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     ..+..+|.+++||+++++.+ .++.+.+|+++++.||+||++.+.+...
T Consensus       307 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                           01122388999999999887 5666678999999999999987655443


Q ss_pred             CCC--CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017          315 PTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       315 ~~~--~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~  392 (520)
                      ...  ....++|+|+|+++++|+|+ ++++++.|+.|||+++|+.++.||+++|+.+.  ++.+|||+|||+|++++   
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~---  429 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVIDA-NGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDA---  429 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEECC-CCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECC---
Confidence            221  22357899999999999995 57889999999999999999999999998875  35689999999999998   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  468 (520)
                             +|+++++||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++..+          
T Consensus       430 -------~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~----------  491 (538)
T TIGR03208       430 -------EGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG----------  491 (538)
T ss_pred             -------CCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC----------
Confidence                   8999999999999995 9999999999999999999999999998654    46788887643          


Q ss_pred             CCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          469 IVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                            ...+.+++.+++++ .++.|+     .+++|.++++.+...+||+-
T Consensus       492 ------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~gKv~  532 (538)
T TIGR03208       492 ------CTLDFAAMVAFLKAQKVALQY-----IPERLEVVDALPATPAGKIQ  532 (538)
T ss_pred             ------CCCCHHHHHHHHHhcchhhcc-----CCcEEEEeccCCCCCccccc
Confidence                  34566788888885 688777     45679999999999999873

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.4e-47  Score=413.70  Aligned_cols=386  Identities=17%  Similarity=0.138  Sum_probs=280.0

Q ss_pred             hHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017           12 FFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY   91 (520)
Q Consensus        12 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~   91 (520)
                      +.+.+.++...++.++.+|+++........ .........|++++.......            .......++|+++|+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~ily  271 (652)
T TIGR01217       205 RRDKVAEVRKELPTLRAVVHIPYLGPRETE-APKIDGALDLEDFTAAAQAAE------------LVFEQLPFDHPLWILF  271 (652)
T ss_pred             hHHHHHHHHhcCCCccEEEEEeCCCCcccc-cccccCcccHHHHHhcccCCC------------CCceecCCCCCEEEEE
Confidence            356677777777888888876532111000 000012345777654321100            1123456799999999


Q ss_pred             cCCCCCCchhhhhchHHHHH-HHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-------chhhHHH
Q 010017           92 TSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------AVRNLKD  163 (520)
Q Consensus        92 TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-------~~~~~~~  163 (520)
                      ||||||.||||++||++++. ........+++.++|++++++|+.|++. ...+.++..|+++++.       ++..+++
T Consensus       272 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~  350 (652)
T TIGR01217       272 SSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWD  350 (652)
T ss_pred             cCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHH
Confidence            99999999999999999654 3444455678899999999999999864 2345678899998874       3568899


Q ss_pred             HHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHH
Q 010017          164 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA  243 (520)
Q Consensus       164 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (520)
                      .++++++|++...|.++..+....    .. . .                                              
T Consensus       351 ~i~~~~vt~~~~~p~~~~~l~~~~----~~-~-~----------------------------------------------  378 (652)
T TIGR01217       351 IAERTGATLFGTSAKYVMACRKAG----VH-P-A----------------------------------------------  378 (652)
T ss_pred             HHHHhCCeEEecCHHHHHHHHhcC----CC-c-c----------------------------------------------
Confidence            999999999877666654442110    00 0 0                                              


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhC--Ceeeecccccccccceec-cCCCCCC
Q 010017          244 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG--VKVQVGYGLTESSPVIAA-RRPTCNV  319 (520)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g--~~v~~~YG~TE~~~~~~~-~~~~~~~  319 (520)
                                           ....+..+|.+++||+++++++. .+.+.++  ..+.+.||+||++..... .+.....
T Consensus       379 ---------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~  437 (652)
T TIGR01217       379 ---------------------RTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVH  437 (652)
T ss_pred             ---------------------ccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCc
Confidence                                 00112234999999999999874 4455565  457789999997433322 2222234


Q ss_pred             ccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC--CCCccccCCchhhh--cc-cC-CCCccccCceeeeccCCCC
Q 010017          320 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QA-LD-EDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       320 ~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp--~v~~GY~~~~~~t~--~~-f~-~~gw~~TGDlg~~~~~~~~  393 (520)
                      .+++|.|.++++++|+|+ +|+++ +|+.|||+++||  +++.|||+||+.++  +. |. .+|||+|||+|++|+    
T Consensus       438 ~g~~g~p~~g~~v~ivd~-~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~----  511 (652)
T TIGR01217       438 IGEIQAPGLGTAVQSWDP-EGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP----  511 (652)
T ss_pred             CCccCCCcCCCceEEECC-CCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC----
Confidence            578999999999999995 57777 599999999996  68999999998664  22 32 268999999999999    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            ||+++|+||.||+||. +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.++|++.++           
T Consensus       512 ------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~-----------  573 (652)
T TIGR01217       512 ------RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPG-----------  573 (652)
T ss_pred             ------CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCC-----------
Confidence                  8999999999999995 9999999999999999999999999998754    57789988653           


Q ss_pred             CcCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          470 VHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       470 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           .+.+   .++++++++++|..|+     .+++|.++++.+...|||+
T Consensus       574 -----~~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  615 (652)
T TIGR01217       574 -----ATLDDALLDRIKRTIRAGLSPRH-----VPDEIIEVPGIPHTLTGKR  615 (652)
T ss_pred             -----CCCCHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccC
Confidence                 1122   2567778887787777     5578999999999999996

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-47  Score=401.24  Aligned_cols=331  Identities=24%  Similarity=0.368  Sum_probs=276.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||+|++||.++..........++...+|++++.+|++|.+++... +.++..|+++++.  
T Consensus       145 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  224 (496)
T PRK06839        145 EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK  224 (496)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence            3467899999999999999999999999987766655666788899999999999999988664 5568889888773  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|.+.++|+++..+.......                                             
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  259 (496)
T PRK06839        225 FEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE---------------------------------------------  259 (496)
T ss_pred             CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc---------------------------------------------
Confidence             6788999999999999999999998875531100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                    ...+..+|.+++||+++++.+.+.+...|+++++.||+||++..++....
T Consensus       260 ------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  309 (496)
T PRK06839        260 ------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSE  309 (496)
T ss_pred             ------------------------------cCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEeccc
Confidence                                          00112238899999999998855555559999999999999865543322


Q ss_pred             C--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          316 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       316 ~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                      .  ....+++|+|+++++++|+|++ ++.+++|+.|||+++|+.++.||+++|+.++..+ .+|||+|||++++++    
T Consensus       310 ~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~----  383 (496)
T PRK06839        310 EDARRKVGSIGKPVLFCDYELIDEN-KNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE----  383 (496)
T ss_pred             ccccccCCCCcccCCCceEEEECCC-cCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcC----
Confidence            1  2346789999999999999965 5669999999999999999999999999999888 489999999999998    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            +|++++.||.||+|+. +|++|+|.+||++|.++|.|.+|+|+|.+++    .+.++|+++++           
T Consensus       384 ------~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  445 (496)
T PRK06839        384 ------DGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS-----------  445 (496)
T ss_pred             ------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC-----------
Confidence                  8999999999999995 8999999999999999999999999998765    46788888753           


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                           ...+.+++++++++.|+.++     ++.+|.++++.+...+||+.
T Consensus       446 -----~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~~P~t~~GKi~  485 (496)
T PRK06839        446 -----SVLIEKDVIEHCRLFLAKYK-----IPKEIVFLKELPKNATGKIQ  485 (496)
T ss_pred             -----CCCCHHHHHHHHHhhCcCCC-----CCcEEEEeccCCCCcccccc
Confidence                 34567889999999888886     55789999999999999973

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-48  Score=421.86  Aligned_cols=329  Identities=23%  Similarity=0.329  Sum_probs=269.0

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh-hhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~-~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-  156 (520)
                      ...++++++++|||||||.||||++||+++.+.+..+. ..+++.++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  220 (705)
T PRK06060        141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINS  220 (705)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeC
Confidence            34678999999999999999999999999988776553 4577888999999999999988754 45678889988874 


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+...++++++|+++++|+++..+......                                            
T Consensus       221 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--------------------------------------------  256 (705)
T PRK06060        221 APVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--------------------------------------------  256 (705)
T ss_pred             CCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--------------------------------------------
Confidence               456778889999999999999999877542100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ..+..+|.+++||+++++.+ +++.+.+ ++++++.||+||++..+.
T Consensus       257 ---------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  303 (705)
T PRK06060        257 ---------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFV  303 (705)
T ss_pred             ---------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEE
Confidence                                             01122388999999999887 5666667 589999999999986554


Q ss_pred             ccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       312 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .........+++|+|+++++++|+|+ .++++++|+.|||+++|++++.||||+|+.+.   ..+|||+|||+|++++  
T Consensus       304 ~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~--  377 (705)
T PRK06060        304 SNRVDEWRLGTLGRVLPPYEIRVVAP-DGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDS--  377 (705)
T ss_pred             eccCCCCCcCcccccCCCcEEEEECC-CCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECC--
Confidence            44333344678999999999999995 58899999999999999999999999998753   3579999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++.+++    .+.+++++....        
T Consensus       378 --------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--------  440 (705)
T PRK06060        378 --------DGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGA--------  440 (705)
T ss_pred             --------CceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEecccc--------
Confidence                    8999999999999997 9999999999999999999999999998653    577888875431        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           .......+++++++++.|+.|+     .+.+|.++++.+...|||+
T Consensus       441 -----~~~~~~~~~i~~~l~~~L~~~~-----~P~~i~~v~~iP~t~~GKi  481 (705)
T PRK06060        441 -----TIDGSVMRDLHRGLLNRLSAFK-----VPHRFAVVDRLPRTPNGKL  481 (705)
T ss_pred             -----CcChHHHHHHHHHHHHhCCCCc-----CCcEEEEeecCCCCcchhh
Confidence                 0001123578888888888888     4578999999999999986

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-47  Score=412.52  Aligned_cols=341  Identities=21%  Similarity=0.250  Sum_probs=265.6

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHH-HHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ..++|+++|+|||||||.||||+++|+++.... ..+...+++.++|++++.+|+.|+++... .+.++..|+++++.  
T Consensus       230 ~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g  309 (629)
T PRK10524        230 LESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEG  309 (629)
T ss_pred             eCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECC
Confidence            467899999999999999999999999975443 33445678889999999999999887654 56678889888763  


Q ss_pred             -----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          157 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       157 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                           ++..+++.|+++++|++.++|+++..+.+......                            .           
T Consensus       310 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------~-----------  350 (629)
T PRK10524        310 LPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL----------------------------R-----------  350 (629)
T ss_pred             CCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc----------------------------c-----------
Confidence                 36778999999999999999999877644210000                            0           


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCCeeeecccccccccce
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVI  310 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~  310 (520)
                                                        ...+..+|.+++||+++++.+.+ +.+.+++++++.||+||++..+
T Consensus       351 ----------------------------------~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  396 (629)
T PRK10524        351 ----------------------------------KHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPI  396 (629)
T ss_pred             ----------------------------------ccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchh
Confidence                                              00112238999999999998854 4556899999999999997433


Q ss_pred             eccCC----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC---CCCccccCCchhhhcccC---CCCccc
Q 010017          311 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALD---EDGWLN  380 (520)
Q Consensus       311 ~~~~~----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp---~v~~GY~~~~~~t~~~f~---~~gw~~  380 (520)
                      .....    .....+++|+|+++++++|+|+++++++++|+.|||+++||   +++.|||++++.+.+.+.   .++||+
T Consensus       397 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (629)
T PRK10524        397 LAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYS  476 (629)
T ss_pred             hcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEE
Confidence            22221    12345789999999999999975799999999999999998   688999999988876542   368999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  456 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~  456 (520)
                      |||+|++++          ||+++|.||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.++|++.
T Consensus       477 TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~  545 (629)
T PRK10524        477 TFDWGIRDA----------DGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPK  545 (629)
T ss_pred             cCCcEEEcC----------CCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEEC
Confidence            999999998          8999999999999997 8999999999999999999999999998764    567888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .+..        ...........++++++++++|..|+     .+++|.++++.+...+||+
T Consensus       546 ~~~~--------~~~~~~~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  594 (629)
T PRK10524        546 DSDS--------LADREARLALEKEIMALVDSQLGAVA-----RPARVWFVSALPKTRSGKL  594 (629)
T ss_pred             CCCc--------cccccchHHHHHHHHHHHHhhcCCCc-----CCCEEEEcCCCCCCCCcch
Confidence            4310        00000001123456666666666666     5578999999999999986

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=6.9e-48  Score=407.24  Aligned_cols=327  Identities=23%  Similarity=0.317  Sum_probs=256.9

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCC-CCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc--
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~--  157 (520)
                      ..++|+++|+|||||||.||||++||+++.+.+......+++. ++|++++++|++|.+++...+.++..|+++++.+  
T Consensus       149 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  228 (525)
T PRK05851        149 PDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTT  228 (525)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHH
Confidence            4679999999999999999999999999999888877778888 8999999999999999987778899999998743  


Q ss_pred             -----hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          158 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       158 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                           +..+++.+.++++|.+. +|.++..++.........                                       
T Consensus       229 ~~~~~~~~~~~~i~~~~~t~~~-~p~~~~~~l~~~~~~~~~---------------------------------------  268 (525)
T PRK05851        229 AFSASPFRWLSWLSDSRATLTA-APNFAYNLIGKYARRVSD---------------------------------------  268 (525)
T ss_pred             HHHHCHHHHHHHHHHhCCeEEe-CCcHHHHHHHHhhccccC---------------------------------------
Confidence                 45688999999999774 455543332211000000                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHH---hCC---eeeecccccc
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA---IGV---KVQVGYGLTE  305 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~---~g~---~v~~~YG~TE  305 (520)
                                                        ..+..+|.+++||+++++++ +++.+.   +|.   ++++.||+||
T Consensus       269 ----------------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  314 (525)
T PRK05851        269 ----------------------------------VDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAE  314 (525)
T ss_pred             ----------------------------------CCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence                                              00111388899999999886 555443   454   4999999999


Q ss_pred             cccceeccCCC---------------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhh
Q 010017          306 SSPVIAARRPT---------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  370 (520)
Q Consensus       306 ~~~~~~~~~~~---------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~  370 (520)
                      ++..++...+.               ....+++|+|+|+++++|+|++++.+++.|+.|||+++|++++.|||++|+.+ 
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        315 STCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             hceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            97665543221               12346899999999999999776677999999999999999999999998743 


Q ss_pred             cccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc---
Q 010017          371 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---  447 (520)
Q Consensus       371 ~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~---  447 (520)
                          .+|||+|||+|+++           +|+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++   
T Consensus       394 ----~~~~~~TGDl~~~~-----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~  457 (525)
T PRK05851        394 ----PDDWFPTGDLGYLV-----------DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGS  457 (525)
T ss_pred             ----CCCceeccceEEEE-----------CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCC
Confidence                47899999999886           5999999999999997 9999999999999999999999999987543   


Q ss_pred             -eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017          448 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       448 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                       ..+++|++..                 ...+.++++++++++|+.+..   ..++.|.+++  +.+...+||+
T Consensus       458 ~~~~~~v~~~~-----------------~~~~~~~~~~~~~~~l~~~l~---~~P~~~~~v~~~~lP~t~~GKi  511 (525)
T PRK05851        458 ARPGLVIAAEF-----------------RGPDEAGARSEVVQRVASECG---VVPSDVVFVAPGSLPRTSSGKL  511 (525)
T ss_pred             CceeEEEEEEe-----------------cCcchHHHHHHHHHHHHHHhC---CCccEEEEECCCCcCcCcchHH
Confidence             3445554321                 112456778889999988832   1557899998  8899999986

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-47  Score=413.16  Aligned_cols=384  Identities=16%  Similarity=0.124  Sum_probs=283.9

Q ss_pred             HHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEec
Q 010017           13 FNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYT   92 (520)
Q Consensus        13 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T   92 (520)
                      .+.+.++...++.++.+++++......  ..........|++++.......            .......++|+++|+||
T Consensus       206 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~ilyT  271 (655)
T PRK03584        206 RAKVAELRAALPSLEHVVVVPYLGPAA--AAAALPGALLWEDFLAPAEAAE------------LEFEPVPFDHPLWILYS  271 (655)
T ss_pred             HHHHHHHHhcCCCccEEEEEecCCCcc--cccccCCcccHHHHhhccccCC------------CCceecCCCCcEEEEec
Confidence            445556656667777777765321100  0001112356777654211100            11234567999999999


Q ss_pred             CCCCCCchhhhhchHHHHHH-HHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-------chhhHHHH
Q 010017           93 SGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-------AVRNLKDD  164 (520)
Q Consensus        93 SGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-------~~~~~~~~  164 (520)
                      |||||.||||++||++++.+ .......+++.++|+++++.++.|++.. ..+.++..|+++++.       ++..+++.
T Consensus       272 SGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~  350 (655)
T PRK03584        272 SGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDL  350 (655)
T ss_pred             CCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH
Confidence            99999999999999987643 4555566788899999999999887653 345678899998763       46789999


Q ss_pred             HhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHHH
Q 010017          165 LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWAR  244 (520)
Q Consensus       165 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (520)
                      ++++++|.+..+|+++..+......    ..                                                 
T Consensus       351 i~~~~vt~~~~~P~~~~~l~~~~~~----~~-------------------------------------------------  377 (655)
T PRK03584        351 AAEEGVTVFGTSAKYLDACEKAGLV----PG-------------------------------------------------  377 (655)
T ss_pred             HHHHCCEEEEcCHHHHHHHHhcCCC----cc-------------------------------------------------
Confidence            9999999999999998776431000    00                                                 


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh--CCeeeecccccccccceecc-CCCCCCc
Q 010017          245 IICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTESSPVIAAR-RPTCNVL  320 (520)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~--g~~v~~~YG~TE~~~~~~~~-~~~~~~~  320 (520)
                                          ....+..+|.+++||+++++++ +.+.+.+  ++.+++.||+||++...... .......
T Consensus       378 --------------------~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~  437 (655)
T PRK03584        378 --------------------ETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYR  437 (655)
T ss_pred             --------------------ccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCC
Confidence                                0001223489999999999987 4555666  47899999999976443322 2223456


Q ss_pred             cccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC--CCCccccCCchhhh--ccc-C-CCCccccCceeeeccCCCCC
Q 010017          321 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QAL-D-EDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       321 ~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp--~v~~GY~~~~~~t~--~~f-~-~~gw~~TGDlg~~~~~~~~~  394 (520)
                      +++|.|.+|++++|+|+ +++++ +|+.|||+++||  +++.|||++|+.++  +.+ . .+|||+|||+|++|+     
T Consensus       438 g~~g~p~~g~~~~ivd~-~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~-----  510 (655)
T PRK03584        438 GEIQCRGLGMAVEAWDE-DGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE-----  510 (655)
T ss_pred             CccCCCcCCceeEEECC-CCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC-----
Confidence            88999999999999995 57777 799999999996  79999999998654  222 1 258999999999999     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           ||+++|+||+||+||. +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.++|++.++            
T Consensus       511 -----dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~------------  572 (655)
T PRK03584        511 -----HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEG------------  572 (655)
T ss_pred             -----CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCC------------
Confidence                 8999999999999996 999999999999999999999999999876    467889988653            


Q ss_pred             cCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ...+   .+++++++++.|..|+     .+++|.++++.+...|||+
T Consensus       573 ----~~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        573 ----VTLDDALRARIRTTIRTNLSPRH-----VPDKIIAVPDIPRTLSGKK  614 (655)
T ss_pred             ----CCCcHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccc
Confidence                1122   2567777777777776     5578999999999999996

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.7e-47  Score=404.37  Aligned_cols=396  Identities=26%  Similarity=0.413  Sum_probs=301.6

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCC-CCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC
Q 010017            3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSV-APDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI   81 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (520)
                      +.++ .+..+.+.+.+.+..++.++.+++++...... .........+.+|+++++.....             ......
T Consensus       113 ~~~i-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~  178 (576)
T PRK05620        113 EVIV-ADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTV-------------YDWPEL  178 (576)
T ss_pred             cEEE-EChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCCCc-------------CCCCCC
Confidence            3444 45677777877777777778777765322110 00011223456788887532110             112345


Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHh--hhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      .++++++++|||||||.||||++||+++.......  ...+++.++|++++.+|++|.+++...+.++..|+++++.   
T Consensus       179 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~  258 (576)
T PRK05620        179 DETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPD  258 (576)
T ss_pred             CccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCC
Confidence            67999999999999999999999999986544332  2346788899999999999999988778888899998763   


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.+++++++.+.++|+++..++.......                                            
T Consensus       259 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  294 (576)
T PRK05620        259 LSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP--------------------------------------------  294 (576)
T ss_pred             CCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC--------------------------------------------
Confidence             57889999999999999999999987754311100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     .....+|.+++||++++..+ .++.+.+|+++++.||+||++...+...
T Consensus       295 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  343 (576)
T PRK05620        295 -------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVAR  343 (576)
T ss_pred             -------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeec
Confidence                                           00012388999999999887 5666778999999999999987655433


Q ss_pred             CCC--------CCccccccCcCCeEEEEEeCCCCCcCC--CCCccEEEEecCCCCccccCCchhh---------------
Q 010017          315 PTC--------NVLGSVGHPINHTEIKIVDAETNEVLP--AGSKGIVKVRGSQVMQGYFKNPSAT---------------  369 (520)
Q Consensus       315 ~~~--------~~~~~~G~~~~~~~v~ivd~~~~~~~~--~g~~GEl~v~gp~v~~GY~~~~~~t---------------  369 (520)
                      +..        ....++|++.++++++++|+  +++++  +|+.|||+++|+.++.|||++|+.+               
T Consensus       344 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~  421 (576)
T PRK05620        344 PPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVED  421 (576)
T ss_pred             cCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchh
Confidence            211        11347899999999999984  55554  5789999999999999999999988               


Q ss_pred             -hcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc-
Q 010017          370 -KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR-  447 (520)
Q Consensus       370 -~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~-  447 (520)
                       .++|..+|||+|||++++++          ||.+++.||.||+|+. +|++|+|.+||++|.+||.|.+|+|+|.+++ 
T Consensus       422 ~~~~~~~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~  490 (576)
T PRK05620        422 ANDRFTADGWLRTGDVGSVTR----------DGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDK  490 (576)
T ss_pred             hhcccccCCcEecCceEEEcC----------CceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCC
Confidence             33455689999999999998          8999999999999995 9999999999999999999999999998764 


Q ss_pred             ---eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          448 ---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       448 ---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                         ...+++++.++.             ...+.+.++++++++++|+.|+     .++.|.++++.+...+||+
T Consensus       491 ~g~~~~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~~P~t~~GKv  546 (576)
T PRK05620        491 WGERPLAVTVLAPGI-------------EPTRETAERLRDQLRDRLPNWM-----LPEYWTFVDEIDKTSVGKF  546 (576)
T ss_pred             cCceeEEEEEecCCC-------------CcccccHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCcccC
Confidence               355666665431             1122356899999999999998     4578999999999999986

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.4e-47  Score=405.58  Aligned_cols=331  Identities=21%  Similarity=0.338  Sum_probs=275.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~-  156 (520)
                      ...++|+++|+|||||||.||||++||+++..++......+.+..+|++++.+|++|.+++..  .+.++..|+++++. 
T Consensus       179 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~  258 (527)
T TIGR02275       179 PTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAP  258 (527)
T ss_pred             CCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECC
Confidence            456899999999999999999999999999988887777788889999999999999998764  45668889988873 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.+++++++++.++|.++..+........                                           
T Consensus       259 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------------------------------  295 (527)
T TIGR02275       259 DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------------------------------  295 (527)
T ss_pred             CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------------------------------
Confidence              57788999999999999999999877754321100                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                      ..+..+|.+++||++++..+ ..+.+.+|+++++.||+||++......
T Consensus       296 --------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  343 (527)
T TIGR02275       296 --------------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRL  343 (527)
T ss_pred             --------------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCC
Confidence                                            01122388999999999988 555667899999999999965433221


Q ss_pred             C-CCCCCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 R-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~-~~~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      . ......+++|+|+ ++..++|+|+ +++++++|+.|||+++|+.++.||+++|+.+++.|+.+|||+|||+|++++  
T Consensus       344 ~~~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~--  420 (527)
T TIGR02275       344 DDPAEIIFTTQGRPMSPDDEVRVVDD-HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP--  420 (527)
T ss_pred             CCccccccccCCCCCCCCceEEEECC-CCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC--
Confidence            1 1122346889999 5899999994 588999999999999999999999999999999998899999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|+++.+         
T Consensus       421 --------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~---------  482 (527)
T TIGR02275       421 --------EGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP---------  482 (527)
T ss_pred             --------CccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC---------
Confidence                    8999999999999985 9999999999999999999999999998754    46788887642         


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                              ..+..++++++++. ++.++     .+.+|.++++.+...+||+.
T Consensus       483 --------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~iP~t~sGKv~  522 (527)
T TIGR02275       483 --------ALKAAQLRRFLRERGLAEYK-----LPDRVEFIDSLPLTAVGKID  522 (527)
T ss_pred             --------CCCHHHHHHHHHhCCCcccc-----CCCEEEEeccCCCCCcccee
Confidence                    24667888888874 77776     55789999999999999973

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.4e-47  Score=398.92  Aligned_cols=384  Identities=28%  Similarity=0.440  Sum_probs=304.6

Q ss_pred             hhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEE
Q 010017           10 PEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATY   89 (520)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i   89 (520)
                      ++....+.+....++.++.+++.........     .....+|+++.......             .......++++++|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~a~i  171 (513)
T PRK07656        110 GLFLGVDYSATTRLPALEHVVICETEEDDPH-----TEKMKTFTDFLAAGDPA-------------ERAPEVDPDDVADI  171 (513)
T ss_pred             hhhHHHHHHHHhccCCccEEEEEcCcccccC-----ccccccHHHHHhcCCCC-------------CCcCCCCCCceEEE
Confidence            4444555554444556666665543221100     11234677775432210             11234578999999


Q ss_pred             EecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---chhhHHHHH
Q 010017           90 VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVRNLKDDL  165 (520)
Q Consensus        90 ~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---~~~~~~~~i  165 (520)
                      +|||||||.||+|.+||+++...+..+...+++.++|++++.+|++|.+++.. .+.++..|+++++.   ++..+++.|
T Consensus       172 ~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  251 (513)
T PRK07656        172 LFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLI  251 (513)
T ss_pred             EeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHH
Confidence            99999999999999999999888888788888999999999999999999876 45678899988873   578899999


Q ss_pred             hhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHH
Q 010017          166 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI  245 (520)
Q Consensus       166 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (520)
                      +++++|++.++|+++..+........                                                      
T Consensus       252 ~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------------------  277 (513)
T PRK07656        252 ETERITVLPGPPTMYNSLLQHPDRSA------------------------------------------------------  277 (513)
T ss_pred             HHhCCeEEechHHHHHHHHcCCCcCC------------------------------------------------------
Confidence            99999999999999988765311100                                                      


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCC-eeeecccccccccceeccCCCCC---Cc
Q 010017          246 ICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPTCN---VL  320 (520)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~---~~  320 (520)
                                           ..+..+|.+++||+++++.+ +.+.+.+++ ++++.||+||++++++.+.....   ..
T Consensus       278 ---------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  336 (513)
T PRK07656        278 ---------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVA  336 (513)
T ss_pred             ---------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccC
Confidence                                 01122488999999999887 666677888 89999999999877766554322   25


Q ss_pred             cccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccC
Q 010017          321 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG  400 (520)
Q Consensus       321 ~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~  400 (520)
                      +++|.|+++++++|+|+ .+++++.|+.|||+++|+.++.||++++..+...+..+|||+|||+|++++          +
T Consensus       337 ~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~----------~  405 (513)
T PRK07656        337 GTIGTAIAGVENKIVNE-LGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE----------E  405 (513)
T ss_pred             CCccccCCCcEEEEECC-CCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC----------C
Confidence            78999999999999995 589999999999999999999999999999999997799999999999998          8


Q ss_pred             cEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCCccc
Q 010017          401 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASE  476 (520)
Q Consensus       401 G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  476 (520)
                      |.++++||.||+|++ +|++|+|.+||++|.++|+|.+++|++.+++    .+.++|+++..                ..
T Consensus       406 g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~----------------~~  468 (513)
T PRK07656        406 GYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG----------------AE  468 (513)
T ss_pred             eeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC----------------CC
Confidence            999999999999996 8999999999999999999999999997654    35678887532                34


Q ss_pred             cChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          477 LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       477 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      .+.+++++++++.|+.+.     .+..|.++++.+...+||+.
T Consensus       469 ~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gK~~  506 (513)
T PRK07656        469 LTEEELIAYCREHLAKYK-----VPRSIEFLDELPKNATGKVL  506 (513)
T ss_pred             CCHHHHHHHHHhhccccc-----CCCEEEEecCCCCCCcccee
Confidence            567889999999998887     45779999999999999873

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-48  Score=364.18  Aligned_cols=331  Identities=21%  Similarity=0.337  Sum_probs=284.0

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~  156 (520)
                      .+.+++++++.+-+.||||+||.+..||.++..++....+.++++..+++++.+|..|-+.+.+  .+..+..|+++++.
T Consensus       184 ~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla  263 (542)
T COG1021         184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLA  263 (542)
T ss_pred             CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEEC
Confidence            4567899999999999999999999999999998888889999999999999999999988876  46678999999984


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++......|+++++|+...||.....+++..+..                                           
T Consensus       264 ~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~-------------------------------------------  300 (542)
T COG1021         264 PDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE-------------------------------------------  300 (542)
T ss_pred             CCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-------------------------------------------
Confidence               6788899999999999999999887776543221                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      +..++++|.+-+||+.+++.. ++....+||.+-+.+||.|.-...+-
T Consensus       301 --------------------------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTR  348 (542)
T COG1021         301 --------------------------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTR  348 (542)
T ss_pred             --------------------------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccc
Confidence                                            133444599999999999987 67777899999999999996432221


Q ss_pred             cC-CCCCCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          313 RR-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       313 ~~-~~~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      -. +.+....+-|+|+ |.-+++|+| ++|+++++||+|+|..+||..++|||+.|+.++.+|+.+|+|+|||+.++++ 
T Consensus       349 LDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~-  426 (542)
T COG1021         349 LDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDP-  426 (542)
T ss_pred             cCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecC-
Confidence            11 1112346779997 789999999 5699999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCcee----EEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP----GAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~----~a~vv~~~~~~~~~~~~  466 (520)
                               ||++.+.||.||+|+ ++||+|..+|||+.|..||.|.+|++|+.+|+.+    +|+||++..        
T Consensus       427 ---------dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~--------  488 (542)
T COG1021         427 ---------DGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP--------  488 (542)
T ss_pred             ---------CceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC--------
Confidence                     899999999999998 6999999999999999999999999999998765    489998753        


Q ss_pred             cCCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               ..+..+++.++++. |+.|+     .+.+|.+++..+.+.=||+
T Consensus       489 ---------~~~~~qlr~~L~~~GlAa~K-----~PDrie~v~~~P~T~VGKI  527 (542)
T COG1021         489 ---------PLRAAQLRRFLRERGLAAFK-----LPDRIEFVDSLPLTAVGKI  527 (542)
T ss_pred             ---------CCCHHHHHHHHHHcchhhhc-----CCcceeecccCCCcccccc
Confidence                     46778899998775 88888     5588999999998887776

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-47  Score=397.62  Aligned_cols=327  Identities=26%  Similarity=0.390  Sum_probs=275.1

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---  156 (520)
                      ..++|+++++|||||||.||||++||+++...+..+...++..++|++++.+|++|.+++.. .+.++..|+++++.   
T Consensus       125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~  204 (471)
T PRK07787        125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRP  204 (471)
T ss_pred             CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCC
Confidence            46789999999999999999999999999988887777788889999999999999999876 45678899998874   


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.++ ++++.+.++|+++..+......                                               
T Consensus       205 ~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-----------------------------------------------  236 (471)
T PRK07787        205 TPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-----------------------------------------------  236 (471)
T ss_pred             CHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-----------------------------------------------
Confidence            5788999999 9999999999999877542000                                               


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                   ...+..+|.+++||+++++.+ +.+.+.++.++++.||+||++...+....
T Consensus       237 -----------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  287 (471)
T PRK07787        237 -----------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD  287 (471)
T ss_pred             -----------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC
Confidence                                         011222388999999999887 55566689999999999999865544433


Q ss_pred             CCCCccccccCcCCeEEEEEeCCCCCcCC-CCC-ccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          316 TCNVLGSVGHPINHTEIKIVDAETNEVLP-AGS-KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~-~g~-~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                      .....+++|+|+++++++|+|++ +++++ +|+ .|||+++|++++.||+++|+.|++.|..+|||+|||+|++++    
T Consensus       288 ~~~~~~~vG~~~~g~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~----  362 (471)
T PRK07787        288 GERRPGWVGLPLAGVETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP----  362 (471)
T ss_pred             CcccCCcccccCCCcEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC----
Confidence            33446789999999999999965 67776 454 899999999999999999999999998899999999999999    


Q ss_pred             CCccccCcEEEEEccc-cceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcC
Q 010017          394 GRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  468 (520)
                            ||++++.||+ ||+++. +|++|+|.+||++|.++|.|.+++|++.++.    .+.+++++..           
T Consensus       363 ------dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~-----------  424 (471)
T PRK07787        363 ------DGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGAD-----------  424 (471)
T ss_pred             ------CCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCC-----------
Confidence                  8999999996 789885 9999999999999999999999999998653    5678888732           


Q ss_pred             CCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                             ..+.+++.+++++.|+.++     .+.+|.++++.+...+||+-
T Consensus       425 -------~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~~~~GKi~  463 (471)
T PRK07787        425 -------DVAADELIDFVAQQLSVHK-----RPREVRFVDALPRNAMGKVL  463 (471)
T ss_pred             -------CCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCCcccc
Confidence                   2466789999999998887     55789999999999999863

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.4e-46  Score=398.49  Aligned_cols=332  Identities=21%  Similarity=0.331  Sum_probs=276.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~-  156 (520)
                      ...++++++++|||||||.||||++||+++..++......+++.++|++++.+|++|.+++..  .+.++..|+++++. 
T Consensus       178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~  257 (536)
T PRK10946        178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP  257 (536)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence            346799999999999999999999999999998888778888999999999999999988754  45678889998873 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.+++++++++.++|.++..++........                                          
T Consensus       258 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------------------------  295 (536)
T PRK10946        258 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS------------------------------------------  295 (536)
T ss_pred             CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc------------------------------------------
Confidence              567788999999999999999999887654211000                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++.+ .++.+.+|+++++.||+||++......
T Consensus       296 -------------------------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  344 (536)
T PRK10946        296 -------------------------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRL  344 (536)
T ss_pred             -------------------------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecC
Confidence                                           011223488999999999987 556667899999999999965433221


Q ss_pred             C-CCCCCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 R-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~-~~~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      . ......+++|+|+ |++.++|+| ++++++++|+.|||+++|+.++.|||++++.|++.|+.+|||+|||+|++++  
T Consensus       345 ~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~--  421 (536)
T PRK10946        345 DDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP--  421 (536)
T ss_pred             CCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC--
Confidence            1 1223457899998 799999999 4689999999999999999999999999999999998899999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|++++.||.+|+|+. +|++|+|.+||.+|.+||.|.+++|++.+++    .+.++++++.          
T Consensus       422 --------~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~----------  482 (536)
T PRK10946        422 --------DGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE----------  482 (536)
T ss_pred             --------CCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCC----------
Confidence                    8999999999999985 9999999999999999999999999998765    4567787752          


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                              ..+.+++++++++. ++.|+     .+..|.++++.+...+||+-
T Consensus       483 --------~~~~~~l~~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKv~  522 (536)
T PRK10946        483 --------PLKAVQLRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKVD  522 (536)
T ss_pred             --------CCCHHHHHHHHHhCCccccc-----cCcEEEEeccCCCCCCCccc
Confidence                    25667888888875 88877     55789999999999999873

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=7.1e-47  Score=400.93  Aligned_cols=328  Identities=23%  Similarity=0.291  Sum_probs=274.2

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+........+++.+++++++.+|++|.+++...+.++..|+++++.   
T Consensus       176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~  255 (542)
T PRK06155        176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRF  255 (542)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCC
Confidence            34679999999999999999999999999988777777778899999999999999999988778889999998874   


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.|+++++|.+..+|+++..+.......                                              
T Consensus       256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------------------  289 (542)
T PRK06155        256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARE----------------------------------------------  289 (542)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc----------------------------------------------
Confidence            5789999999999999999999887664421000                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                   ......++.++.||  +++.+ +.+.+.+|+++++.||+||++..+.... 
T Consensus       290 -----------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-  337 (542)
T PRK06155        290 -----------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-  337 (542)
T ss_pred             -----------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-
Confidence                                         00011236555554  34544 6777788999999999999987665433 


Q ss_pred             CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC---CCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017          316 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp---~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~  392 (520)
                      .....+++|.+.++++++|+|+ .+++++.|+.|||+++|+   +++.||+++++.+.+.| .++||+|||+|++++   
T Consensus       338 ~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~---  412 (542)
T PRK06155        338 GSQRPGSMGRLAPGFEARVVDE-HDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDA---  412 (542)
T ss_pred             CCCCCCCcCccCCCceEEEECC-CCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcC---
Confidence            2345678999999999999995 588999999999999998   69999999999999888 489999999999998   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~  468 (520)
                             ||+++|.||.||+|+. +|++|+|.+||+++.+||.|.+|+|++.++    ..+.+++++..+          
T Consensus       413 -------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~----------  474 (542)
T PRK06155        413 -------DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDG----------  474 (542)
T ss_pred             -------CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCC----------
Confidence                   8999999999999995 999999999999999999999999999865    356677776543          


Q ss_pred             CCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                            ...+.+++++++++.|+.++     .+..|.++++.+...+||+.
T Consensus       475 ------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi~  514 (542)
T PRK06155        475 ------TALEPVALVRHCEPRLAYFA-----VPRYVEFVAALPKTENGKVQ  514 (542)
T ss_pred             ------CCCCHHHHHHHHHhhCcCcc-----CCcEEEEeccCCCCccccee
Confidence                  34567899999999998887     45779999999999999973

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6.5e-47  Score=402.04  Aligned_cols=334  Identities=28%  Similarity=0.409  Sum_probs=270.1

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC--CCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~  156 (520)
                      ...++++++|+|||||||.||||++||+++..++.......+  ....++.+.++|++|.+++.. .+.++..|++++..
T Consensus       180 ~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~  259 (546)
T PLN02330        180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVM  259 (546)
T ss_pred             cCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEe
Confidence            346789999999999999999999999999876543221111  123468899999999998765 45567888887773


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|.+.++|+++..+.......                              +..          
T Consensus       260 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------~~~----------  299 (546)
T PLN02330        260 SRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE------------------------------EFD----------  299 (546)
T ss_pred             cccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccc------------------------------ccc----------
Confidence               6788999999999999999999998775421000                              000          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                  +    ..+ .+|.+++||+++++.+ +.+.+.+ |+++++.||+||++++..
T Consensus       300 ----------------------------~----~~~-~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  346 (546)
T PLN02330        300 ----------------------------L----SKL-KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITL  346 (546)
T ss_pred             ----------------------------c----chh-eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccccccccee
Confidence                                        0    000 1278899999999987 5556667 899999999999876544


Q ss_pred             ccC-CC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017          312 ARR-PT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       312 ~~~-~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                      ... +.    ....+++|.|+|+++++|+|+++++++|+|+.|||+++|+.++.||+++++.+++.|+.+|||+|||+|+
T Consensus       347 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  426 (546)
T PLN02330        347 THGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGY  426 (546)
T ss_pred             cCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEE
Confidence            321 11    1234689999999999999988899999999999999999999999999999999998899999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          ||++++.||.+|+|+. +|++|+|.+||+++.++|.|.+++|++.+++    .+.++|++.+.    
T Consensus       427 ~~~----------dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~----  491 (546)
T PLN02330        427 IDD----------DGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK----  491 (546)
T ss_pred             EeC----------CCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCC----
Confidence            998          8999999999999996 8999999999999999999999999998653    46677777643    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                  ...+.+++++++++.|+.|+     .++.|.++++.+...+||+
T Consensus       492 ------------~~~~~~~l~~~~~~~l~~~~-----~p~~~~~v~~iP~t~~GK~  530 (546)
T PLN02330        492 ------------AKESEEDILNFVAANVAHYK-----KVRVVQFVDSIPKSLSGKI  530 (546)
T ss_pred             ------------CCCCHHHHHHHHHHhccccc-----CceEEEEeccCCCCCCcce
Confidence                        23456789999999998888     5577999999999999987

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-47  Score=400.28  Aligned_cols=329  Identities=24%  Similarity=0.360  Sum_probs=268.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh-hhc-CCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~-~~~-~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-  156 (520)
                      ...++++++|+|||||||.||+|++||+++...+.... ..+ +...+|+++.++|++|.+++...+ .+..|++.++. 
T Consensus       159 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~  237 (528)
T PRK07470        159 AVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLP  237 (528)
T ss_pred             cCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEec
Confidence            45679999999999999999999999999876544322 222 467789999999999999986544 45566665542 


Q ss_pred             ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                          +++.+++.|+++++|++.++|+++..+.......                                          
T Consensus       238 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------  275 (528)
T PRK07470        238 SERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD------------------------------------------  275 (528)
T ss_pred             ccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC------------------------------------------
Confidence                5788999999999999999999998775421000                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccccee
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ...+..+|.+++||++++... +++.+.+|.++++.||+||+++.++
T Consensus       276 ---------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~  322 (528)
T PRK07470        276 ---------------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNIT  322 (528)
T ss_pred             ---------------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCcee
Confidence                                             001223488999999998876 5666778999999999999877655


Q ss_pred             ccCC--------CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017          312 ARRP--------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       312 ~~~~--------~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      ....        .....+++|.|+++++++++|+ ++++++.|+.|||+++|+.++.||+++|+.+++.| .+|||+|||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD  400 (528)
T PRK07470        323 VLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD-EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGD  400 (528)
T ss_pred             ecchhhccccccccceeeccCcccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecce
Confidence            4321        1223578999999999999995 68899999999999999999999999999999888 489999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~  459 (520)
                      +|++++          +|++++.||.||+|+. +|++|+|.+||+++.++|.|.+|+|+|.+++.    ..+++++.++ 
T Consensus       401 l~~~~~----------~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~-  468 (528)
T PRK07470        401 LGHLDA----------RGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG-  468 (528)
T ss_pred             eEEEcc----------CCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC-
Confidence            999998          8999999999999996 89999999999999999999999999987653    5577776543 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+.+++++++++.|+.|+     .+.+|.++++.+...+||+
T Consensus       469 ---------------~~~~~~~~~~~l~~~l~~~~-----~P~~~~~~~~iP~t~~GKi  507 (528)
T PRK07470        469 ---------------APVDEAELLAWLDGKVARYK-----LPKRFFFWDALPKSGYGKI  507 (528)
T ss_pred             ---------------CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeccCCCCCcccc
Confidence                           23567899999999999888     4467999999999999987

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.9e-47  Score=406.20  Aligned_cols=335  Identities=20%  Similarity=0.295  Sum_probs=258.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC-CCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ..++|+++|+|||||||.||||++||+++.+++......++ +.+++++++++|++|.+++...+.++..|++.++.   
T Consensus       190 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~  269 (612)
T PRK12476        190 LDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPT  269 (612)
T ss_pred             CCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHH
Confidence            46799999999999999999999999999887766666667 68889999999999999987665554445544432   


Q ss_pred             ----chhhHHHHHh--hhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ----AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                          ++..+++.++  +++++.+..+|+++..+.......  .   ..                                
T Consensus       270 ~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~--~---~~--------------------------------  312 (612)
T PRK12476        270 AFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP--A---EG--------------------------------  312 (612)
T ss_pred             HHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh--h---hh--------------------------------
Confidence                4567788884  488999999999887765420000  0   00                                


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh---CC---eeeecccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GV---KVQVGYGL  303 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~---g~---~v~~~YG~  303 (520)
                                                 .       ...+..+| +++||++++..+ +++.+.+   |+   .+++.||+
T Consensus       313 ---------------------------~-------~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~  357 (612)
T PRK12476        313 ---------------------------D-------DIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI  357 (612)
T ss_pred             ---------------------------c-------CcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence                                       0       00011237 899999999887 5555555   54   48999999


Q ss_pred             cccccceeccCCCC---------------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC
Q 010017          304 TESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  356 (520)
Q Consensus       304 TE~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp  356 (520)
                      ||++..++...+..                           ...+++|+|+|+++++|+|++++++++.|+.|||+++|+
T Consensus       358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~  437 (612)
T PRK12476        358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGD  437 (612)
T ss_pred             hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCC
Confidence            99876544322110                           013588999999999999977699999999999999999


Q ss_pred             CCCccccCCchhhhcccCC------------------CCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCc
Q 010017          357 QVMQGYFKNPSATKQALDE------------------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  418 (520)
Q Consensus       357 ~v~~GY~~~~~~t~~~f~~------------------~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  418 (520)
                      +++.|||++|+.|+++|..                  ++||+|||+|++ +          ||+++|+||+||+||+ +|
T Consensus       438 ~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~----------dG~l~i~GR~~d~I~~-~G  505 (612)
T PRK12476        438 NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-L----------DGELYITGRIADLIVI-DG  505 (612)
T ss_pred             cccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-E----------CCEEEEEeccCcEEEE-CC
Confidence            9999999999999998841                  359999999987 4          6999999999999997 99


Q ss_pred             eeeccHHHHHHHhc-Ccccce--EEEEeCCC---ceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHH
Q 010017          419 ENVEPLELEEAALR-SSLIRQ--IVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK  492 (520)
Q Consensus       419 ~~v~p~eIE~~l~~-~p~V~~--~~Vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  492 (520)
                      ++|+|.|||++|.+ ||.|.+  ++|++.++   +.+.+++++.++.               ...+.+++.+++++.+..
T Consensus       506 ~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~l~~~~~~~l~~  570 (612)
T PRK12476        506 RNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGT---------------SRADPAPAIDAIRAAVSR  570 (612)
T ss_pred             cccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCc---------------ccccHHHHHHHHHHHHHH
Confidence            99999999999985 899999  77788764   4577887765431               124668889999999885


Q ss_pred             -HhccCCCccccEEEec--CCCCcCCCcc
Q 010017          493 -WTSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       493 -~~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                       ++.    .++.+.+++  +.+...+||+
T Consensus       571 ~~~~----~p~~v~~v~~~~lP~t~~GKi  595 (612)
T PRK12476        571 RHGL----AVADVRLVPAGAIPRTTSGKL  595 (612)
T ss_pred             hhCC----cceEEEEECCCCcCcCCchHH
Confidence             431    246788887  4888889986

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.4e-46  Score=396.90  Aligned_cols=384  Identities=22%  Similarity=0.288  Sum_probs=299.5

Q ss_pred             ChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEE
Q 010017            9 NPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIAT   88 (520)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~   88 (520)
                      +.+..+.+.+....+++++.++.+++.....    ........|+++.......              .......+++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  165 (515)
T TIGR03098       104 SSERLDLLHPALPGCHDLRTLILVGEPAHAS----EGGGESPSWPKLLALGDAD--------------PPHPVIDSDMAA  165 (515)
T ss_pred             ccchhhhhHhhhhcccccceEEEecCccccc----CCccccccHHHhhcccccc--------------ccCCCCcCCeEE
Confidence            4455555555555555666666654322110    0122334566654322110              012235689999


Q ss_pred             EEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chhhHHHHH
Q 010017           89 YVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNLKDDL  165 (520)
Q Consensus        89 i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~~~~~~i  165 (520)
                      ++|||||||.||||++||+++...+......+++..+|++++++|++|++++...+.++..|+++++.   +++.+++.+
T Consensus       166 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  245 (515)
T TIGR03098       166 ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKAL  245 (515)
T ss_pred             EEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHHH
Confidence            99999999999999999999998888777778888999999999999999988888889999999874   578899999


Q ss_pred             hhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHH
Q 010017          166 QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI  245 (520)
Q Consensus       166 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (520)
                      +++++|++.++|+++..+.......                                                       
T Consensus       246 ~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------------  270 (515)
T TIGR03098       246 EKHGITGLAAVPPLWAQLAQLDWPE-------------------------------------------------------  270 (515)
T ss_pred             HHcCCceEecChHHHHHHHhcccCC-------------------------------------------------------
Confidence            9999999999999998774310000                                                       


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceeccCC-CCCCccc
Q 010017          246 ICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP-TCNVLGS  322 (520)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~  322 (520)
                                           ..+..+|.+++||+++++.+ +.+.+.+ ++.+++.||+||++........ .....++
T Consensus       271 ---------------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  329 (515)
T TIGR03098       271 ---------------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDS  329 (515)
T ss_pred             ---------------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCC
Confidence                                 01122388999999999887 5556666 6889999999998765443322 1245679


Q ss_pred             cccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC-----------CCccccCceeeeccCC
Q 010017          323 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----------DGWLNTGDIGWIAPHH  391 (520)
Q Consensus       323 ~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~-----------~gw~~TGDlg~~~~~~  391 (520)
                      +|+|+++++++|+| +++++++.|+.|||+++|+.++.|||++++.+++.|..           ++||+|||+|++++  
T Consensus       330 vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~--  406 (515)
T TIGR03098       330 IGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDE--  406 (515)
T ss_pred             cceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcC--
Confidence            99999999999999 45888999999999999999999999999998877643           34899999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++    .+.+++++...         
T Consensus       407 --------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~---------  468 (515)
T TIGR03098       407 --------EGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG---------  468 (515)
T ss_pred             --------CceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCC---------
Confidence                    8999999999999996 8999999999999999999999999997654    46677775432         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                             ...+.+++++++++.|+.++     .+..|.++++.+...+||+.
T Consensus       469 -------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~iP~t~~GK~~  508 (515)
T TIGR03098       469 -------EELDRAALLAECRARLPNYM-----VPALIHVRQALPRNANGKID  508 (515)
T ss_pred             -------CCCCHHHHHHHHHhhCcccc-----CCCEEEEeccCCCCCCCCCc
Confidence                   23567889999999988887     55789999999999999873

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-46  Score=397.14  Aligned_cols=329  Identities=26%  Similarity=0.342  Sum_probs=275.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCC-CCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...+++++++|||||||.||||++||+++...+......++. ..+|++++.+|++|.+|+...+.++..|+++++.   
T Consensus       171 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  250 (542)
T PRK07786        171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLG  250 (542)
T ss_pred             CCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCC
Confidence            456889999999999999999999999998887777666766 5678999999999999987778889999998763   


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|.++++|+++..++.......                                           
T Consensus       251 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------------------------------------------  287 (542)
T PRK07786        251 AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-------------------------------------------  287 (542)
T ss_pred             CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc-------------------------------------------
Confidence              57889999999999999999999988754311000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+ .+|.+++||+++++++ +.+.+.+ +.++++.||+||++.+.+.
T Consensus       288 --------------------------------~~~-~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~  334 (542)
T PRK07786        288 --------------------------------RDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCM  334 (542)
T ss_pred             --------------------------------cCc-ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEe
Confidence                                            000 1388899999999887 5556666 7899999999999876554


Q ss_pred             cCCC--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          313 RRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       313 ~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      ....  ....+++|+|++++.++|+| +++++++.|+.|||+++|+.+++||+++++.+++.|. +|||+|||++++++ 
T Consensus       335 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~~~~TGDl~~~~~-  411 (542)
T PRK07786        335 LLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFA-GGWFHSGDLVRQDE-  411 (542)
T ss_pred             cCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhh-CCcccccceEEEcC-
Confidence            3322  13457899999999999999 4578899999999999999999999999999999994 89999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               +|.++++||.||+|+. +|++|+|.+||++|.+||.|.+++|+|.+++    .+.+++++..+.       
T Consensus       412 ---------~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------  474 (542)
T PRK07786        412 ---------EGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDD-------  474 (542)
T ss_pred             ---------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCC-------
Confidence                     8999999999999996 9999999999999999999999999997643    466777765320       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              .....+++++++++.++.|+     ++++|.++++.+...+||+
T Consensus       475 --------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKv  513 (542)
T PRK07786        475 --------AALTLEDLAEFLTDRLARYK-----HPKALEIVDALPRNPAGKV  513 (542)
T ss_pred             --------CCCCHHHHHHHHHhhccCCC-----CCCEEEEeccCCCCCcccc
Confidence                    12456788899988888887     5578999999999999986

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2e-46  Score=399.74  Aligned_cols=332  Identities=28%  Similarity=0.456  Sum_probs=279.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEe---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY---  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~---  155 (520)
                      ...++++++++|||||||.||+|.+||+++..++......+++.++|+++..+|++|.+++... +.++..|+++++   
T Consensus       195 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  274 (559)
T PRK08315        195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE  274 (559)
T ss_pred             cCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC
Confidence            3467899999999999999999999999999888887888889999999999999999998764 556888888874   


Q ss_pred             -cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          156 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       156 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                       .++..+++.++++++|.+.++|+++..+........                                           
T Consensus       275 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~-------------------------------------------  311 (559)
T PRK08315        275 GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR-------------------------------------------  311 (559)
T ss_pred             CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC-------------------------------------------
Confidence             367889999999999999999999876643210000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCe-eeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||++++..+ +.+.+.++.+ +++.||+||++..++.
T Consensus       312 --------------------------------~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~  359 (559)
T PRK08315        312 --------------------------------FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQ  359 (559)
T ss_pred             --------------------------------CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceee
Confidence                                            00112388899999999886 6666777654 9999999999876654


Q ss_pred             cCCCC---CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          313 RRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       313 ~~~~~---~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      .....   ....++|+|+|+++++|+|++++++++.|+.|||+++|++++.|||++|+.+++.|..++||+|||+|++++
T Consensus       360 ~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~  439 (559)
T PRK08315        360 TRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE  439 (559)
T ss_pred             cCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC
Confidence            43221   345789999999999999988799999999999999999999999999999999997799999999999998


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  465 (520)
                                ||.++++||.||+|+. +|++|+|.+||+++.++|.|.+++|++.+++    .+.++|++..+       
T Consensus       440 ----------dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  501 (559)
T PRK08315        440 ----------EGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG-------  501 (559)
T ss_pred             ----------CceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCC-------
Confidence                      8999999999999996 8999999999999999999999999998654    46677777543       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               ...+.+++++++++.++.|+     .+.++.++++.+...+||+
T Consensus       502 ---------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GK~  540 (559)
T PRK08315        502 ---------ATLTEEDVRDFCRGKIAHYK-----IPRYIRFVDEFPMTVTGKI  540 (559)
T ss_pred             ---------CCCCHHHHHHHHHhhccccc-----CCcEEEEcccCCCCCCCce
Confidence                     23567789999999998887     4577999999999999986

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-47  Score=402.76  Aligned_cols=337  Identities=23%  Similarity=0.276  Sum_probs=262.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh----hhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY----DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~----~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ...++++++++|||||||.||||++||+++.++.....    ..+....+++.++.+|++|.+++...+.++..|++++.
T Consensus       165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~  244 (540)
T PRK05857        165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT  244 (540)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe
Confidence            34678999999999999999999999999977654322    22345568899999999999998877778888988877


Q ss_pred             --cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          156 --TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       156 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                        .++..+++.|+++++|.+.++|+++..+........                                          
T Consensus       245 ~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------------------------------  282 (540)
T PRK05857        245 GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------------------------------  282 (540)
T ss_pred             cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC------------------------------------------
Confidence              357889999999999999999999988755311100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceecc
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                       ..+..+|.+++||++++....++.+.+|+++++.||+||++......
T Consensus       283 ---------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  329 (540)
T PRK05857        283 ---------------------------------ATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCL  329 (540)
T ss_pred             ---------------------------------CcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeec
Confidence                                             01122388899999998776667778899999999999987644332


Q ss_pred             CCC-----CCCccccccCcCCeEEEEEeCCCCCcC-----CCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017          314 RPT-----CNVLGSVGHPINHTEIKIVDAETNEVL-----PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       314 ~~~-----~~~~~~~G~~~~~~~v~ivd~~~~~~~-----~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      +..     ....+++|+|+++++++|+|+++..++     +.|+.|||+++||+++.|||++++.|++.| .+|||+|||
T Consensus       330 ~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGD  408 (540)
T PRK05857        330 PTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGD  408 (540)
T ss_pred             ccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccc
Confidence            221     123578999999999999996544333     457899999999999999999999999998 489999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  459 (520)
                      +|++++          +|++++.||.||+||+ +|++|+|.|||++|..||.|.+|+|++.++.    .+.+++++.++.
T Consensus       409 lg~~d~----------~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~  477 (540)
T PRK05857        409 LLERRE----------DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL  477 (540)
T ss_pred             eEEEcC----------CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC
Confidence            999999          8999999999999996 9999999999999999999999999998764    344555554220


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                                     .....+++++.+++.+.+...+. .++++|.++++.+...+||+-
T Consensus       478 ---------------~~~~~~~l~~~~~~~~~~~l~~~-~~P~~v~~~~~iP~t~~GKi~  521 (540)
T PRK05857        478 ---------------DESAARALKHTIAARFRRESEPM-ARPSTIVIVTDIPRTQSGKVM  521 (540)
T ss_pred             ---------------ChhhHHHHHHHHHHHHHhhhccc-cCCeEEEEhhcCCCCCCccee
Confidence                           11123345555544433322111 267899999999999999973

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.2e-46  Score=395.66  Aligned_cols=331  Identities=27%  Similarity=0.395  Sum_probs=268.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||||++||+|+............+.+++++++++|++|..+... .+.++..|+++++.  
T Consensus       169 ~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  248 (517)
T PRK08008        169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEK  248 (517)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccc
Confidence            346799999999999999999999999999765443333345778999999999999876655 45568889988874  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|++.++|.++..+........                                            
T Consensus       249 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  284 (517)
T PRK08008        249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN--------------------------------------------  284 (517)
T ss_pred             cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc--------------------------------------------
Confidence             57889999999999999999999877643210000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     .....++.+.+++ +++... .++.+.+|+++++.||+||++..++...
T Consensus       285 -------------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  332 (517)
T PRK08008        285 -------------------------------DRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDR  332 (517)
T ss_pred             -------------------------------cccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCC
Confidence                                           0001124445544 566554 6777778999999999999976554433


Q ss_pred             C-CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec---CCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          315 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG---SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       315 ~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g---p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      + .....+++|.|+++++++|+| +.+++++.|+.|||+++|   ++++.|||++|+.+++.|..+|||+|||+|++++ 
T Consensus       333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~-  410 (517)
T PRK08008        333 PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE-  410 (517)
T ss_pred             ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC-
Confidence            2 223457899999999999999 468999999999999997   6899999999999999998899999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~  466 (520)
                               ||++++.||.||+||. +|++|+|.+||+++.+||.|.+++|+|.++    +.+.++|+++.+        
T Consensus       411 ---------~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~--------  472 (517)
T PRK08008        411 ---------EGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG--------  472 (517)
T ss_pred             ---------CCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC--------
Confidence                     8999999999999996 899999999999999999999999999865    357788888753        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                              ...+.+++++++++.++.|.     .+..|.++++.+...+||+-
T Consensus       473 --------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~gK~~  512 (517)
T PRK08008        473 --------ETLSEEEFFAFCEQNMAKFK-----VPSYLEIRKDLPRNCSGKII  512 (517)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCcccee
Confidence                    34567889999999998887     45679999999999999873

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-46  Score=396.53  Aligned_cols=384  Identities=23%  Similarity=0.381  Sum_probs=294.1

Q ss_pred             EcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCE
Q 010017            7 VENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI   86 (520)
Q Consensus         7 v~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   86 (520)
                      +.+.++.+.+.++....+.++.++...+.... .   ...++..+++++.......             .......++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~  178 (539)
T PRK07008        116 LFDLTFLPLVDALAPQCPNVKGWVAMTDAAHL-P---AGSTPLLCYETLVGAQDGD-------------YDWPRFDENQA  178 (539)
T ss_pred             EEcchhHHHHHHHHhhCCCceEEEEEccCCcc-c---cCCcccccHHHHhcccCCC-------------cCcccCCcccc
Confidence            44566677777666666777777765432211 0   0123456777775432110             11224567899


Q ss_pred             EEEEecCCCCCCchhhhhchHHHHHHHH--HhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chhh
Q 010017           87 ATYVYTSGTTGNPKGVMLTHKNLLHQIR--SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRN  160 (520)
Q Consensus        87 a~i~~TSGTTG~PKgv~~sh~~~~~~~~--~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~~  160 (520)
                      ++++|||||||.||||++||+++.....  .+...++..++|++++.+|++|++++...+.++..|+++++.    ++..
T Consensus       179 ~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~  258 (539)
T PRK07008        179 SSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKS  258 (539)
T ss_pred             eEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHH
Confidence            9999999999999999999999865332  233456778899999999999998877667778899998874    5688


Q ss_pred             HHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHH
Q 010017          161 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW  240 (520)
Q Consensus       161 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (520)
                      +++.++++++|.+.++|+++..+.+......                                                 
T Consensus       259 ~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------------------  289 (539)
T PRK07008        259 LYELIEAERVTFSAGVPTVWLGLLNHMREAG-------------------------------------------------  289 (539)
T ss_pred             HHHHHHHcCCEEEEechHHHHHHHhcccccC-------------------------------------------------
Confidence            9999999999999999999987754321100                                                 


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCCC--
Q 010017          241 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  317 (520)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  317 (520)
                                                ..+..+|.+++||+++++.+ +++.+.+|+++++.||+||++..++......  
T Consensus       290 --------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~  343 (539)
T PRK07008        290 --------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKH  343 (539)
T ss_pred             --------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccccc
Confidence                                      01122388899999999887 5666778999999999999986554332110  


Q ss_pred             ---------CCccccccCcCCeEEEEEeCCCCCcCCCC--CccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017          318 ---------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       318 ---------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g--~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                               ....++|+|+|+++++|+|+ ++++++.+  +.|||+++|+.++.||+++++   ..+. +|||+|||+|+
T Consensus       344 ~~~~~~~~~~~~~~~G~p~pg~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TGD~~~  418 (539)
T PRK07008        344 SQLPLDEQRKLLEKQGRVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTGDVAT  418 (539)
T ss_pred             ccCCchhhhhhcccCCccccceEEEEECC-CCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCcccCceEE
Confidence                     11357899999999999995 57777653  579999999999999999983   3343 79999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          ||++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.+++    .+.++|+..++    
T Consensus       419 ~~~----------dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~----  483 (539)
T PRK07008        419 IDA----------DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPG----  483 (539)
T ss_pred             EcC----------CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCC----
Confidence            999          8999999999999995 9999999999999999999999999998764    45677776543    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                                  ...+.++++++++++|+.|.     .++.|.++++.+...+||+.
T Consensus       484 ------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgKi~  523 (539)
T PRK07008        484 ------------AEVTREELLAFYEGKVAKWW-----IPDDVVFVDAIPHTATGKLQ  523 (539)
T ss_pred             ------------CccCHHHHHHHHHhhccccc-----CCeEEEEecCCCCCCcccee
Confidence                        23567889999999998887     45789999999999999873

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.1e-46  Score=400.16  Aligned_cols=338  Identities=25%  Similarity=0.355  Sum_probs=260.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---c
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~  157 (520)
                      ..++|+++|+|||||||.||||++||+++................+++++.+|++|.+++...+.++..|+++++.   +
T Consensus       183 ~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~  262 (579)
T PLN03102        183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT  262 (579)
T ss_pred             CCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCC
Confidence            4678999999999999999999999999755444333344566678999999999999987777777788887663   5


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      ...+++.|+++++|++.++|+++..+.+......                                              
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------------  296 (579)
T PLN03102        263 APEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL----------------------------------------------  296 (579)
T ss_pred             hHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------------------------------------
Confidence            6789999999999999999999988865311000                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC--
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--  315 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~--  315 (520)
                                                   ......+.+++||+++++.+.++++.+|+++++.||+||+++.++....  
T Consensus       297 -----------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 -----------------------------SPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             -----------------------------CCcccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCcccccccccc
Confidence                                         0001126678999999998876667789999999999998754432110  


Q ss_pred             ------CC------CCccccccCcCCeEEEEEeCCCCCcCCC--CCccEEEEecCCCCccccCCchhhhcccCCCCcccc
Q 010017          316 ------TC------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  381 (520)
Q Consensus       316 ------~~------~~~~~~G~~~~~~~v~ivd~~~~~~~~~--g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~T  381 (520)
                            ..      ...+..+.+.+  .+++++.+++++++.  ++.|||+++||+++.|||++|+.|++.|+ +|||+|
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~T  424 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNT  424 (579)
T ss_pred             ccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceec
Confidence                  00      11223333334  456667666777764  36899999999999999999999999995 799999


Q ss_pred             CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcCh
Q 010017          382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  457 (520)
Q Consensus       382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~  457 (520)
                      ||+|++++          ||+++|.||.||+|+. +|++|+|.+||+++.+||.|.+++|+|.+++    .+.++|++..
T Consensus       425 GDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  493 (579)
T PLN03102        425 GDVGVIHP----------DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK  493 (579)
T ss_pred             CceEEEcC----------CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecC
Confidence            99999999          8999999999999996 9999999999999999999999999998764    5678888764


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +......+   +   .....+..+++++++++|+.|+     .+.+|.++++.+...+||+
T Consensus       494 ~~~~~~~~---~---~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~~P~t~~gKi  543 (579)
T PLN03102        494 GETTKEDR---V---DKLVTRERDLIEYCRENLPHFM-----CPRKVVFLQELPKNGNGKI  543 (579)
T ss_pred             cccccccc---c---ccccccHHHHHHHHHhhccccc-----CCeEEEEcccCCCCCcccc
Confidence            31000000   0   0001135689999999999998     5578999999999999987

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-47  Score=401.54  Aligned_cols=329  Identities=23%  Similarity=0.334  Sum_probs=272.2

Q ss_pred             CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-----
Q 010017           83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----  156 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-----  156 (520)
                      ++|+++++|||||||.||||+++|+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.     
T Consensus       175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~  254 (534)
T PRK05852        175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF  254 (534)
T ss_pred             CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc
Confidence            578899999999999999999999999988888777888899999999999999999876 44567788887763     


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.|+++++|.++++|+++..+.+......                                             
T Consensus       255 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  289 (534)
T PRK05852        255 SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---------------------------------------------  289 (534)
T ss_pred             CHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---------------------------------------------
Confidence            46789999999999999999999988765321100                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                  ....+..+|.++++|+++++.+ +.+.+.++.++++.||+||++..++....
T Consensus       290 ----------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  341 (534)
T PRK05852        290 ----------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI  341 (534)
T ss_pred             ----------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCc
Confidence                                        0001122489999999999887 55566789999999999999876554322


Q ss_pred             C-----CCCccccccC--cCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          316 T-----CNVLGSVGHP--INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       316 ~-----~~~~~~~G~~--~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      .     .....+.|.+  .++++++++|+ .++++++|+.|||+++|+.+++|||++|+.|++.|. +|||+|||+|+++
T Consensus       342 ~~~~~~~~~~~~~g~~g~~~g~~~~i~d~-~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TGD~~~~d  419 (534)
T PRK05852        342 EGIGQTENPVVSTGLVGRSTGAQIRIVGS-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLS  419 (534)
T ss_pred             cccccccCcccccccCCCCCCCeEEEECC-CCCCCCCCCceEEEEecCcccchhcCCcccchhhhc-CCCcccCceEEEe
Confidence            1     1111233443  69999999995 478899999999999999999999999999999984 8999999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHH
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  464 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~  464 (520)
                      +          ||++++.||.||+|+. +|.+|+|.+||+++.+||.|.+|+|+|.+++    .+.++|++++.      
T Consensus       420 ~----------dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~------  482 (534)
T PRK05852        420 A----------AGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES------  482 (534)
T ss_pred             C----------CCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCC------
Confidence            8          8999999999999995 9999999999999999999999999998764    46788887543      


Q ss_pred             HHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          465 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                ...+.+++.+++++.|+.|+     ++++|.++++.+...+||+
T Consensus       483 ----------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  521 (534)
T PRK05852        483 ----------APPTAEELVQFCRERLAAFE-----IPASFQEASGLPHTAKGSL  521 (534)
T ss_pred             ----------CCCCHHHHHHHHHHhccccc-----CCeEEEEhhhcCCCCCccc
Confidence                      23567889999999998887     5578999999999999986

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-46  Score=392.54  Aligned_cols=331  Identities=25%  Similarity=0.361  Sum_probs=269.7

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhh-hhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~~---  156 (520)
                      ..++++++++|||||||.||+|++||+++...+..+........+|++++.+|++|++++...+ ..+..|+++++.   
T Consensus       132 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~  211 (488)
T PRK09088        132 IPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGF  211 (488)
T ss_pred             CCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence            4578999999999999999999999999988777766666778899999999999999987644 457788888774   


Q ss_pred             chhhHHHHHh--hhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 ~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                      .+...+..+.  ++++|.+.++|.++..+......   .                                         
T Consensus       212 ~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~---~-----------------------------------------  247 (488)
T PRK09088        212 EPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGF---D-----------------------------------------  247 (488)
T ss_pred             CHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCc---C-----------------------------------------
Confidence            4566777765  48899999999998776431000   0                                         


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccC
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     ...+..+|.+++||++++....+.+...|+++++.||+||++.......
T Consensus       248 -------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~  296 (488)
T PRK09088        248 -------------------------------AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSV  296 (488)
T ss_pred             -------------------------------ccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCC
Confidence                                           0011223889999999988763333344899999999999986543221


Q ss_pred             C---CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          315 P---TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       315 ~---~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .   .....+++|.|.|+++++|+|+ ++++++.|+.|||+++||+++.||+++++.+++.|+.+|||+|||+|++++  
T Consensus       297 ~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~--  373 (488)
T PRK09088        297 DCDVIRAKAGAAGIPTPTVQTRVVDD-QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA--  373 (488)
T ss_pred             CcccccccCCccccCCCCcEEEEECC-CCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC--
Confidence            1   1234578999999999999984 588899999999999999999999999999999998899999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|++++.||.||+|+. +|++|+|.+||++|.++|.|.+++|++.+++    ...+++++.++         
T Consensus       374 --------~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~---------  435 (488)
T PRK09088        374 --------DGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG---------  435 (488)
T ss_pred             --------CCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC---------
Confidence                    8999999999999996 8999999999999999999999999998764    35577776543         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                             ...+.+++.+++++.++.|+     .+++|.++++.+...+||+.
T Consensus       436 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  475 (488)
T PRK09088        436 -------APLDLERIRSHLSTRLAKYK-----VPKHLRLVDALPRTASGKLQ  475 (488)
T ss_pred             -------CCCCHHHHHHHHHhhCcCCC-----CCCEEEEcccCCCCCCCcee
Confidence                   23466789999998888776     55789999999999999873

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-47  Score=395.62  Aligned_cols=321  Identities=24%  Similarity=0.299  Sum_probs=270.8

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---ch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~  158 (520)
                      ..+++++|+|||||||.||||++||+++..++......+++.++|+++...|++|..++...+.++..|+++++.   ++
T Consensus       141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~  220 (487)
T PRK07638        141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIP  220 (487)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCH
Confidence            357789999999999999999999999988888777778889999999999999998877677788999999884   58


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|++.++|+++..+.+.. .                                                 
T Consensus       221 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~-------------------------------------------------  250 (487)
T PRK07638        221 NQVLDKLETENISVMYTVPTMLESLYKEN-R-------------------------------------------------  250 (487)
T ss_pred             HHHHHHHHHcCCeEEEeCcHHHHHHHhCc-C-------------------------------------------------
Confidence            88999999999999999999998775420 0                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceeccCCC
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                   .....+.++++|++++... .++.+.+ ++++++.||+||++..+......
T Consensus       251 -----------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  301 (487)
T PRK07638        251 -----------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEE  301 (487)
T ss_pred             -----------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccc
Confidence                                         0001145678888888876 5566666 78999999999998766544322


Q ss_pred             -CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCC
Q 010017          317 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  395 (520)
Q Consensus       317 -~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~  395 (520)
                       ....+++|+|+++++++|+|+ .++++++|+.|||+++|+.++.||+++++.+.+.+ .+|||+|||+|++++      
T Consensus       302 ~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~------  373 (487)
T PRK07638        302 SERRPNSVGRPFHNVQVRICNE-AGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDE------  373 (487)
T ss_pred             cCCCCCCCCcccCCcEEEEECC-CCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcC------
Confidence             234578999999999999995 58899999999999999999999999998887655 589999999999998      


Q ss_pred             ccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCc
Q 010017          396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  471 (520)
Q Consensus       396 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  471 (520)
                          +|++++.||++|+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++    .+.++++.                
T Consensus       374 ----~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----------------  432 (487)
T PRK07638        374 ----EGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----------------  432 (487)
T ss_pred             ----CCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----------------
Confidence                8999999999999996 8999999999999999999999999998765    34455542                


Q ss_pred             CCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          472 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                          ..+.+++++++++.|+.|.     ++++|.++++.+...+||+-
T Consensus       433 ----~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKv~  471 (487)
T PRK07638        433 ----SATKQQLKSFCLQRLSSFK-----IPKEWHFVDEIPYTNSGKIA  471 (487)
T ss_pred             ----CCCHHHHHHHHHHHhhccc-----CCcEEEEecccCCCCccccc
Confidence                2356789999999999887     55789999999999999973

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.9e-46  Score=396.73  Aligned_cols=331  Identities=26%  Similarity=0.411  Sum_probs=277.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEe---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY---  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~---  155 (520)
                      ...++++++++|||||||.||||.+||+++.+++......+++.++|++++.+|++|.++.... +.++..|+++++   
T Consensus       197 ~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~  276 (558)
T PRK12583        197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNE  276 (558)
T ss_pred             ccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecC
Confidence            3467899999999999999999999999998888877777888999999999999999998764 456788888885   


Q ss_pred             -cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          156 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       156 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                       .++..+++.++++++|.+.++|+++..+.......                              +             
T Consensus       277 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------------------------~-------------  313 (558)
T PRK12583        277 AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG------------------------------N-------------  313 (558)
T ss_pred             CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc------------------------------C-------------
Confidence             35778899999999999999999886654321000                              0             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-Ceeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||+++++.+ +.+.+.++ ..+++.||+||++.+.+.
T Consensus       314 --------------------------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  361 (558)
T PRK12583        314 --------------------------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQ  361 (558)
T ss_pred             --------------------------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceec
Confidence                                            00112388899999999887 56667776 469999999999877665


Q ss_pred             cCCC---CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          313 RRPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       313 ~~~~---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      ....   .....++|+|.+++.++|+|++ +++++.|+.|||+++|+.++.||+++++.+...|..++||+|||+|++++
T Consensus       362 ~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~  440 (558)
T PRK12583        362 TTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE  440 (558)
T ss_pred             cCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC
Confidence            4322   1245789999999999999976 89999999999999999999999999999999887799999999999998


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  465 (520)
                                ||++++.||+||+|+. +|++|+|.+||+++.+||.|.+++|+|.+++    .+.+++++.++       
T Consensus       441 ----------dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  502 (558)
T PRK12583        441 ----------QGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPG-------  502 (558)
T ss_pred             ----------CccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCC-------
Confidence                      8999999999999996 9999999999999999999999999997653    46677776543       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               ...+.++++++++++|+.+.     .+.+|.++++.+...+||+
T Consensus       503 ---------~~~~~~~i~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGK~  541 (558)
T PRK12583        503 ---------HAASEEELREFCKARIAHFK-----VPRYFRFVDEFPMTVTGKV  541 (558)
T ss_pred             ---------CCCCHHHHHHHHHhhcccCc-----CCcEEEEeccCCCCCCCCc
Confidence                     23467889999999999887     4577999999999999987

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.4e-47  Score=413.58  Aligned_cols=322  Identities=23%  Similarity=0.358  Sum_probs=262.1

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. .+.++..|+++++.  
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~  440 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS  440 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence            346799999999999999999999999999988877777788899999999999999999866 45678899998874  


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        +...+.+.+.++++|.+.++|+++..+....     .                                         
T Consensus       441 ~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----~-----------------------------------------  474 (718)
T PRK08043        441 PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-----N-----------------------------------------  474 (718)
T ss_pred             cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-----C-----------------------------------------
Confidence              3457788899999999999999876543210     0                                         


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +.+.+.+|+++++.||+||++...+..
T Consensus       475 -------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  523 (718)
T PRK08043        475 -------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSIN  523 (718)
T ss_pred             -------------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEec
Confidence                                           001123489999999999987 556667899999999999998776655


Q ss_pred             CCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccC--Cchh-------hhcccCCCCccccCce
Q 010017          314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK--NPSA-------TKQALDEDGWLNTGDI  384 (520)
Q Consensus       314 ~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~--~~~~-------t~~~f~~~gw~~TGDl  384 (520)
                      .+.....+++|+|+|+++++++|.+ +    .++.|||+++|++++.|||+  +|+.       +.+.+..+|||+|||+
T Consensus       524 ~~~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDl  598 (718)
T PRK08043        524 VPMAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDI  598 (718)
T ss_pred             CCcccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCE
Confidence            4444567899999999999999854 2    25679999999999999999  4553       2233445799999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeE----EEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~----a~vv~~~~~~  460 (520)
                      |++|+          ||+++|.||+||+||. +|++|+|.|||+++.+|+.+.+++|++.+++..+    ++++ .    
T Consensus       599 g~~d~----------dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~-~----  662 (718)
T PRK08043        599 VRFDE----------QGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT-D----  662 (718)
T ss_pred             EEEcC----------CCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc-C----
Confidence            99999          8999999999999996 8999999999999999999999999998765433    3321 1    


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                    ...+.++++++++++ |+.|+     .+++|.++++.+...+||+
T Consensus       663 --------------~~~~~~~l~~~~~~~~l~~~~-----vP~~i~~v~~lP~t~~GKi  702 (718)
T PRK08043        663 --------------SELTREKLQQYAREHGVPELA-----VPRDIRYLKQLPLLGSGKP  702 (718)
T ss_pred             --------------cccCHHHHHHHHHhcCCCccc-----CCceEEEecccCcCCCCCc
Confidence                          234667899999887 88888     4578999999999999997

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-46  Score=393.72  Aligned_cols=327  Identities=21%  Similarity=0.287  Sum_probs=270.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhh-hhhhcCeeEEe---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMY---  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~---  155 (520)
                      ...++++++|+|||||||.||||++||+++..........+++.++|++++.+|++|.+++...+ .++..|+++++   
T Consensus       148 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~  227 (529)
T PRK07867        148 VADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK  227 (529)
T ss_pred             cCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC
Confidence            34679999999999999999999999999988888777888889999999999999999987644 46788888887   


Q ss_pred             cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      +++..+++.++++++|++..+|+.+..+......    .                                         
T Consensus       228 ~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~----~-----------------------------------------  262 (529)
T PRK07867        228 FSASGFLPDVRRYGATYANYVGKPLSYVLATPER----P-----------------------------------------  262 (529)
T ss_pred             CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc----c-----------------------------------------
Confidence            4688899999999999999999988765431100    0                                         


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                 .   .....+| +++||+++++...++.+.+|+++++.||+||++..+...+ 
T Consensus       263 ---------------------------~---~~~~~lr-~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~-  310 (529)
T PRK07867        263 ---------------------------D---DADNPLR-IVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTP-  310 (529)
T ss_pred             ---------------------------c---ccccceE-EEecCCCChHHHHHHHHHhCCcEEEeecccccccccccCC-
Confidence                                       0   0001125 4568888888888888889999999999999876544322 


Q ss_pred             CCCCccccccCcCCeEEEEEeCCCCCcCCCCC------------ccEEEE-ecCCCCccccCCchhhhcccCCCCccccC
Q 010017          316 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGS------------KGIVKV-RGSQVMQGYFKNPSATKQALDEDGWLNTG  382 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~------------~GEl~v-~gp~v~~GY~~~~~~t~~~f~~~gw~~TG  382 (520)
                       ....+++|.|.++  ++++|++++++++.|+            .|||++ +|++++.||+++|+.+.+.|. +|||+||
T Consensus       311 -~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TG  386 (529)
T PRK07867        311 -DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSG  386 (529)
T ss_pred             -CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeec
Confidence             2345789999999  7788877788899998            999999 999999999999999999885 8999999


Q ss_pred             ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChH
Q 010017          383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  458 (520)
Q Consensus       383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~  458 (520)
                      |+|++++          +|+++|.||.||+|++ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.+++++.++
T Consensus       387 D~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~  455 (529)
T PRK07867        387 DLAYRDA----------DGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPG  455 (529)
T ss_pred             cEEEEeC----------CCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCC
Confidence            9999998          8999999999999997 9999999999999999999999999998764    56677777543


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHH--HHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                                      ...+.+++++++++.  |+.++     .++.|.++++.+...+||+.
T Consensus       456 ----------------~~~~~~~l~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKv~  497 (529)
T PRK07867        456 ----------------AKFDPDAFAEFLAAQPDLGPKQ-----WPSYVRVCAELPRTATFKVL  497 (529)
T ss_pred             ----------------CCCCHHHHHHHHHhhccCCccc-----CCeEEEEeeccCCCCCccee
Confidence                            345778888888764  66665     55789999999999999973

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=4.8e-46  Score=395.65  Aligned_cols=332  Identities=27%  Similarity=0.380  Sum_probs=273.6

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---  156 (520)
                      ..++|+++|+|||||||.||+|++||+++......+...+++.++|++++.+|++|.+++.. .+.++..|+++++.   
T Consensus       184 ~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~  263 (547)
T PRK06087        184 THGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF  263 (547)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCC
Confidence            46789999999999999999999999999888777777788899999999999999998765 44567888888874   


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.++++++++++++|+.+..++......                                              
T Consensus       264 ~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~----------------------------------------------  297 (547)
T PRK06087        264 TPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ----------------------------------------------  297 (547)
T ss_pred             CHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC----------------------------------------------
Confidence            5788999999999999999887776664421100                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                   ...+..+|.+++||+++++.+.+....+|+++++.||+||++.........
T Consensus       298 -----------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~  348 (547)
T PRK06087        298 -----------------------------PADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDD  348 (547)
T ss_pred             -----------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCCc
Confidence                                         001223489999999999998665666799999999999998766544322


Q ss_pred             C--CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          317 C--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       317 ~--~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      +  ...+++|.|++++.++++| +.+++++.|+.|||+++|++++.||+++++.+...|+.+|||+|||++++++     
T Consensus       349 ~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~-----  422 (547)
T PRK06087        349 PLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE-----  422 (547)
T ss_pred             chhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC-----
Confidence            2  2345789999999999999 5678899999999999999999999999999999998899999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           +|+++++||.+|+|+. +|++|+|.+||+++.++|.|.+++|+|.+++    .+.+++++...            
T Consensus       423 -----~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~------------  484 (547)
T PRK06087        423 -----AGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP------------  484 (547)
T ss_pred             -----CCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCC------------
Confidence                 8999999999999995 9999999999999999999999999998654    46678877532            


Q ss_pred             cCCccccChHHHHHHHH-HHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          471 HADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                         ....+.+++.+++. +.+..++     .+.+|.++++.+...+||+.
T Consensus       485 ---~~~~~~~~~~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGK~~  526 (547)
T PRK06087        485 ---HHSLTLEEVVAFFSRKRVAKYK-----YPEHIVVIDKLPRTASGKIQ  526 (547)
T ss_pred             ---CCCCCHHHHHHHHHhccccccC-----CCeEEEEeccCCCCCCCcCc
Confidence               02335566776664 3566565     66889999999999999973

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4.5e-47  Score=443.44  Aligned_cols=344  Identities=19%  Similarity=0.193  Sum_probs=274.1

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----  156 (520)
                      ..++|+++|+|||||||.||||++||+++.+.+..+...+++.++|+++++.|++|..++...+.++..|+++++.    
T Consensus       412 ~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~  491 (1389)
T TIGR03443       412 VGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADD  491 (1389)
T ss_pred             CCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhh
Confidence            4689999999999999999999999999999888888888899999999999999998887788889999999874    


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+.....                                              
T Consensus       492 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------------------------------  525 (1389)
T TIGR03443       492 IGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------------------------------  525 (1389)
T ss_pred             ccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc----------------------------------------------
Confidence              35578999999999999999999877643100                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||++++... .++.+.. +++++|.||+||++..++.
T Consensus       526 --------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  573 (1389)
T TIGR03443       526 --------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSY  573 (1389)
T ss_pred             --------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEE
Confidence                                            01122388899999998876 4444433 7899999999999876554


Q ss_pred             cCCCC-----------CCccccccCcCCeEEEEEeCC-CCCcCCCCCccEEEEecCCCCccccCCchhhhcccC------
Q 010017          313 RRPTC-----------NVLGSVGHPINHTEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------  374 (520)
Q Consensus       313 ~~~~~-----------~~~~~~G~~~~~~~v~ivd~~-~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~------  374 (520)
                      .....           ....++|+|+++++++|+|++ .++++|.|+.|||+|+||++++||+|+|+.|+++|.      
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~  653 (1389)
T TIGR03443       574 FEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVD  653 (1389)
T ss_pred             EEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccC
Confidence            32110           123578999999999999964 357899999999999999999999999999999883      


Q ss_pred             ----------------------CCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhc
Q 010017          375 ----------------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR  432 (520)
Q Consensus       375 ----------------------~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~  432 (520)
                                            .++||+|||+|++++          ||.++|+||+||+||+ +|+||+|.|||++|.+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~----------dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~  722 (1389)
T TIGR03443       654 PSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP----------DGNVECCGRADDQVKI-RGFRIELGEIDTHLSQ  722 (1389)
T ss_pred             cccccccccccccccccccCCCccceeecCCceeEcC----------CCCEEEecccCCEEEe-CcEEecHHHHHHHHHh
Confidence                                  258999999999999          8999999999999996 9999999999999999


Q ss_pred             CcccceEEEEeCCC----ceeEEEEEcChH--HHHHHHHHcCCCcCC--------ccccChHHHHHHHHHHHHHHhccCC
Q 010017          433 SSLIRQIVVIGQDQ----RRPGAIIVPDKE--EVLMAAKRLSIVHAD--------ASELSKEKTISLLYGELRKWTSKCS  498 (520)
Q Consensus       433 ~p~V~~~~Vvg~~~----~~~~a~vv~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~  498 (520)
                      ||.|.+++|++.++    +.++|++++..+  .+.++..........        ......++++++++++|+.|+.   
T Consensus       723 ~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~---  799 (1389)
T TIGR03443       723 HPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAI---  799 (1389)
T ss_pred             CcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccC---
Confidence            99999999987543    468899998621  111100000000000        0011246788888888888884   


Q ss_pred             CccccEEEecCCCCcCCCcc
Q 010017          499 FQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       499 ~~i~~~~~~~~~~~~~~g~l  518 (520)
                        +..|..+++.+...|||+
T Consensus       800 --P~~~~~~~~lP~t~~GKi  817 (1389)
T TIGR03443       800 --PTVIVPLKKLPLNPNGKV  817 (1389)
T ss_pred             --CceEEEcccCCCCCCccc
Confidence              477889999999999987

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.1e-46  Score=394.54  Aligned_cols=330  Identities=28%  Similarity=0.428  Sum_probs=277.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|..++.. .+.++..|+++++.  
T Consensus       152 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  231 (504)
T PRK07514        152 PRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK  231 (504)
T ss_pred             cCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence            346899999999999999999999999999988877777788899999999999999999876 45678899998874  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.+  .++|.+.++|+++..++......                                             
T Consensus       232 ~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  264 (504)
T PRK07514        232 FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLT---------------------------------------------  264 (504)
T ss_pred             CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCC---------------------------------------------
Confidence             567777777  47999999999988775420000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                    ...+..+|.+++||+++++.+ +.+.+.++.++++.||+||++.......
T Consensus       265 ------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  314 (504)
T PRK07514        265 ------------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPY  314 (504)
T ss_pred             ------------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCc
Confidence                                          001122388999999999887 5666678999999999999876544332


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      ......+++|.|+++++++|+|++++++++.|+.|||+++|++++.||+++++.+++.|..+|||+|||++++++     
T Consensus       315 ~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-----  389 (504)
T PRK07514        315 DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE-----  389 (504)
T ss_pred             cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC-----
Confidence            223345789999999999999988899999999999999999999999999999999998899999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           +|.+++.||.||+||. +|++|+|.+||+++.++|.|.+++|++.+++    .+.+++++.++            
T Consensus       390 -----~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~------------  451 (504)
T PRK07514        390 -----RGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG------------  451 (504)
T ss_pred             -----CccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCC------------
Confidence                 8999999999999996 8999999999999999999999999998653    46788887643            


Q ss_pred             cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ...+.+++++.+++.|+.++     ++++|.++++.+...+||+
T Consensus       452 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gK~  490 (504)
T PRK07514        452 ----AALDEAAILAALKGRLARFK-----QPKRVFFVDELPRNTMGKV  490 (504)
T ss_pred             ----CCCCHHHHHHHHHhhcccCC-----CCcEEEEeccCCCCCCcce
Confidence                33467889999999998887     5578999999999999986

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-46  Score=396.29  Aligned_cols=328  Identities=22%  Similarity=0.304  Sum_probs=272.1

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---c
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~  157 (520)
                      ..++++++++|||||||.||||++||+++......+...+++.++|++++++|++|.+++...+.++..|+++++.   +
T Consensus       178 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~  257 (540)
T PRK06164        178 ADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFD  257 (540)
T ss_pred             CCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCC
Confidence            3568999999999999999999999999998888888888899999999999999999998778889999998874   5


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      +..+++.|+++++|+++++|+++..+.+....    .                                           
T Consensus       258 ~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~----~-------------------------------------------  290 (540)
T PRK06164        258 AARTARALRRHRVTHTFGNDEMLRRILDTAGE----R-------------------------------------------  290 (540)
T ss_pred             HHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc----c-------------------------------------------
Confidence            77899999999999999999999887653000    0                                           


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecC-CCCChhHHHHHHHhCCeeeecccccccccceeccCCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG-GSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg-~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                   ..+..++.+.++| .+.+..+.++....|+++++.||+||++..++.....
T Consensus       291 -----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  341 (540)
T PRK06164        291 -----------------------------ADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPAT  341 (540)
T ss_pred             -----------------------------CCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCC
Confidence                                         0111124444444 4445555555555589999999999998766554322


Q ss_pred             C---CCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017          317 C---NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       317 ~---~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~  392 (520)
                      .   ....+.|.+. +++.++|+|++++++++.|+.||||++|++++.|||++|+.|++.|+.+|||+|||+|++++   
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~---  418 (540)
T PRK06164        342 DPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG---  418 (540)
T ss_pred             CCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC---
Confidence            1   2234567775 89999999988899999999999999999999999999999999998899999999999998   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC---CceeEEEEEcChHHHHHHHHHcCC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                             +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.+   ...+.++++++++           
T Consensus       419 -------~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~-----------  479 (540)
T PRK06164        419 -------DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDG-----------  479 (540)
T ss_pred             -------CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCC-----------
Confidence                   8999999999999997 89999999999999999999999999964   3467788887643           


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCC
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL  516 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g  516 (520)
                           ...+.+++.+++++.|+.++     .+..|.++++.+...+|
T Consensus       480 -----~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~g  516 (540)
T PRK06164        480 -----ASPDEAGLMAACREALAGFK-----VPARVQVVEAFPVTESA  516 (540)
T ss_pred             -----CCCCHHHHHHHHHhhcccCc-----CCcEEEEecCCCCCCCC
Confidence                 34567899999999999887     44678999988877766

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-46  Score=398.47  Aligned_cols=331  Identities=30%  Similarity=0.473  Sum_probs=274.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC-C-CCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEec
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-A-ENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~-~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~  156 (520)
                      ...++++++++|||||||.||+|++||+++...+......+. + ..++++++.+|++|.+++... +.++..|++++..
T Consensus       215 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~  294 (573)
T PRK05605        215 RPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLL  294 (573)
T ss_pred             CCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEe
Confidence            356899999999999999999999999999877665444332 2 347899999999999998664 4467888888763


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         +++.+++.++++++|++.++|+++..+.+......                                          
T Consensus       295 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  332 (573)
T PRK05605        295 PAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG------------------------------------------  332 (573)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC------------------------------------------
Confidence               67889999999999999999999988765321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  312 (520)
                                                       ..+..+|.+++||+++++.+ ..+.+.++.++++.||+||+++++..
T Consensus       333 ---------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  379 (573)
T PRK05605        333 ---------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG  379 (573)
T ss_pred             ---------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence                                             00112388999999999887 55566679999999999999877665


Q ss_pred             cCCC-CCCccccccCcCCeEEEEEeCCC-CCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          313 RRPT-CNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       313 ~~~~-~~~~~~~G~~~~~~~v~ivd~~~-~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      .... ....+++|+|+|++.++|+|+++ +++++.|+.|||+++|+.++.||+++++.+++.|. +|||+|||+|++++ 
T Consensus       380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~-  457 (573)
T PRK05605        380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEE-  457 (573)
T ss_pred             CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcC-
Confidence            4432 23457899999999999999776 68899999999999999999999999999999885 67999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~  466 (520)
                               +|++++.||.||+++. +|++|+|.+||+++..||.|.+++|+|.++    +.+.++++++.+        
T Consensus       458 ---------~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~--------  519 (573)
T PRK05605        458 ---------DGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPG--------  519 (573)
T ss_pred             ---------CCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCC--------
Confidence                     8999999999999996 999999999999999999999999999764    467788887643        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ...+.+++++++++.|+.++     .+..|.++++.+...+||+
T Consensus       520 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~GKi  558 (573)
T PRK05605        520 --------AALDPEGLRAYCREHLTRYK-----VPRRFYHVDELPRDQLGKV  558 (573)
T ss_pred             --------CCCCHHHHHHHHHHhCcccc-----CCcEEEEeccCCCCCcccc
Confidence                    23567889999999998876     4577999999999999987

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-45  Score=390.49  Aligned_cols=387  Identities=30%  Similarity=0.515  Sum_probs=310.1

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+.+..+.+.+....++.++.++++++....     ........+.+++......             .......+++
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  168 (521)
T PRK06187        107 VLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAASDT-------------FDFPDIDEND  168 (521)
T ss_pred             EEEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCCcc-------------CCCCCCCccc
Confidence            344566777777777777778888876543321     0012335566665432111             1123456789


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chhhHH
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNLK  162 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~~~~  162 (520)
                      +++++|||||||.||+|.+||+++.+........+++.++|++++.+|++|.+++...+.++..|+++++.   ++..++
T Consensus       169 ~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~  248 (521)
T PRK06187        169 AAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLL  248 (521)
T ss_pred             eEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHHH
Confidence            99999999999999999999999998888777888999999999999999999998877789999999874   578899


Q ss_pred             HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017          163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  242 (520)
Q Consensus       163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (520)
                      +.++++++|.++++|+++..+........                                                   
T Consensus       249 ~~l~~~~~t~l~~~p~~~~~l~~~~~~~~---------------------------------------------------  277 (521)
T PRK06187        249 DLIETERVTFFFAVPTIWQMLLKAPRAYF---------------------------------------------------  277 (521)
T ss_pred             HHHHHhCCeEEEchHHHHHHHHcCcCCCc---------------------------------------------------
Confidence            99999999999999999988765321100                                                   


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCCCC---
Q 010017          243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---  318 (520)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~---  318 (520)
                                              ..+..+|.+++||++++..+ +.+.+.+++++++.||+||++..+........   
T Consensus       278 ------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  333 (521)
T PRK06187        278 ------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPG  333 (521)
T ss_pred             ------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccc
Confidence                                    01112388999999999887 55566679999999999999876665543322   


Q ss_pred             ---CccccccCcCCeEEEEEeCCCCCcCCC--CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          319 ---VLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       319 ---~~~~~G~~~~~~~v~ivd~~~~~~~~~--g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                         ..+++|+|.+++.++|+|++ +++++.  |+.|||+++|+.++.||+++++.+.+.|. ++||+|||++++++    
T Consensus       334 ~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tGD~~~~~~----  407 (521)
T PRK06187        334 QWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTGDVGYIDE----  407 (521)
T ss_pred             ccccCCccccccCCeEEEEECCC-CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceeccceEEEcC----
Confidence               56789999999999999964 778888  99999999999999999999999999885 77999999999998    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            +|.+++.||.+|+|++ +|.+|+|.+||+++.++|.|.+++|++.++    +.+.+++++.++           
T Consensus       408 ------~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----------  469 (521)
T PRK06187        408 ------DGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG-----------  469 (521)
T ss_pred             ------CCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC-----------
Confidence                  8999999999999996 999999999999999999999999999755    356777777543           


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                           ...+.+++++++++.|+.+.     .+..|.++++.+...+||+.
T Consensus       470 -----~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~~P~t~~gK~~  509 (521)
T PRK06187        470 -----ATLDAKELRAFLRGRLAKFK-----LPKRIAFVDELPRTSVGKIL  509 (521)
T ss_pred             -----CCCCHHHHHHHHHHhccCCC-----CceEEEEccCCCCCCCCCee
Confidence                 23567888999988888876     55788899999999999863

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-46  Score=396.93  Aligned_cols=330  Identities=28%  Similarity=0.461  Sum_probs=268.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC---------CCC-CcEEEEEcChhhHHHHHHh-hhhhh
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---------AEN-GDKFLSMLPPWHVYERACG-YFIFS  148 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---------~~~-~d~~l~~lpl~h~~g~~~~-~~~~~  148 (520)
                      ....+|+++|+|||||||.||||++||+++..++......+.         +.. .+++++.+|++|++++... +..+.
T Consensus       203 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~  282 (562)
T PRK12492        203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMV  282 (562)
T ss_pred             CCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhh
Confidence            356789999999999999999999999999776655443332         222 3578899999999998653 34466


Q ss_pred             cCeeEEec----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCccc
Q 010017          149 RGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  224 (520)
Q Consensus       149 ~G~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (520)
                      .|.+.++.    ++..+++.++++++|++.++|+++..+.......                                  
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------  328 (562)
T PRK12492        283 SGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK----------------------------------  328 (562)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc----------------------------------
Confidence            77766542    5678889999999999999999988775421000                                  


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccc
Q 010017          225 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGL  303 (520)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~  303 (520)
                                                               ...+..+|.+++||++++..+ +++.+.+|+++++.||+
T Consensus       329 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~  367 (562)
T PRK12492        329 -----------------------------------------DLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGL  367 (562)
T ss_pred             -----------------------------------------cccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCc
Confidence                                                     001122388999999999887 55666789999999999


Q ss_pred             cccccceeccCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccC
Q 010017          304 TESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  382 (520)
Q Consensus       304 TE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TG  382 (520)
                      ||++..++..... ....+++|+|+++++++|+|+ +++++++|+.|||+++|+.++.|||++|+.|.+.|+.+|||+||
T Consensus       368 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        368 TETSPVASTNPYGELARLGTVGIPVPGTALKVIDD-DGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             cccCceeeecCCcccccCCccceecCCCEEEEECC-CCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            9998766544422 234578999999999999995 67889999999999999999999999999999999878999999


Q ss_pred             ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChH
Q 010017          383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  458 (520)
Q Consensus       383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~  458 (520)
                      |+|++++          +|+++|.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.++.    .+.+++++...
T Consensus       447 D~g~~~~----------~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  515 (562)
T PRK12492        447 DIAVIDP----------DGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP  515 (562)
T ss_pred             cEEEECC----------CCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC
Confidence            9999999          8999999999999997 8999999999999999999999999998654    45567666422


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                       ..+.++++++++++|+.|.     .+.+|.++++.+...+||+
T Consensus       516 -----------------~~~~~~i~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~GK~  553 (562)
T PRK12492        516 -----------------GLSVEELKAYCKENFTGYK-----VPKHIVLRDSLPMTPVGKI  553 (562)
T ss_pred             -----------------CCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCCCCce
Confidence                             2456789999999998887     5578999999999999986

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-46  Score=390.11  Aligned_cols=326  Identities=27%  Similarity=0.389  Sum_probs=275.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.++..|+++++.   
T Consensus       137 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~  216 (483)
T PRK03640        137 EFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF  216 (483)
T ss_pred             CCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCC
Confidence            34678999999999999999999999999988777666678889999999999999999988777788899998874   


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.++++++|++.++|+++..+.......                                              
T Consensus       217 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----------------------------------------------  250 (483)
T PRK03640        217 DAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG----------------------------------------------  250 (483)
T ss_pred             CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc----------------------------------------------
Confidence            5788999999999999999999998875431110                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                    .....+|.+++||++++....+.+..+|+++++.||+||++..+......
T Consensus       251 ------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  300 (483)
T PRK03640        251 ------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPE  300 (483)
T ss_pred             ------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcc
Confidence                                          00012388999999999988666666799999999999987544332222


Q ss_pred             --CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          317 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       317 --~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                        ....+++|+|++++++++.++  ++++++|+.|||+++||+++.||+++|+.+++.| .+|||+|||++++++     
T Consensus       301 ~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~-----  372 (483)
T PRK03640        301 DALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDE-----  372 (483)
T ss_pred             cccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcC-----
Confidence              234688999999999999984  4789999999999999999999999999999988 489999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           ||++++.||+||++|. +|++|+|.+||+++.++|.|.+++|++.+++    .+.++++++              
T Consensus       373 -----~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--------------  432 (483)
T PRK03640        373 -----EGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--------------  432 (483)
T ss_pred             -----CCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--------------
Confidence                 8999999999999996 9999999999999999999999999998664    355666654              


Q ss_pred             cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ...+.+++++++++.|+.|+     .+++|.++++.+...+||+
T Consensus       433 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gK~  471 (483)
T PRK03640        433 ----GEVTEEELRHFCEEKLAKYK-----VPKRFYFVEELPRNASGKL  471 (483)
T ss_pred             ----CCCCHHHHHHHHHHhccCCC-----CCcEEEEeCCCCCCCccce
Confidence                23567889999998888886     5578999999999999986

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-46  Score=391.46  Aligned_cols=331  Identities=24%  Similarity=0.350  Sum_probs=275.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEe---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY---  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~---  155 (520)
                      ...++++++++|||||||.||+|++||+++..........+++..+|+++..+|++|.+++.. .+..+..|+++++   
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~  224 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE  224 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc
Confidence            346799999999999999999999999999876665566678889999999999999998865 3556788888876   


Q ss_pred             cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      .++..+++.++++++|.+.++|+++..++......                                             
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~---------------------------------------------  259 (497)
T PRK06145        225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD---------------------------------------------  259 (497)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc---------------------------------------------
Confidence            36788999999999999999999998775421000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceecc
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                    ...+..+|.+++||++++..+ +.+.+.+ +.++++.||+||++...+..
T Consensus       260 ------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  309 (497)
T PRK06145        260 ------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLM  309 (497)
T ss_pred             ------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceec
Confidence                                          001112388899999999887 5566666 67899999999998755543


Q ss_pred             CC--CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~--~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      ..  .....+++|+|+++++++++|+ +++++++|+.|||+++|++++.||+++++.+++.| .++||+|||+|++++  
T Consensus       310 ~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~--  385 (497)
T PRK06145        310 EAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDE--  385 (497)
T ss_pred             cCccccccCCCcccCCCCceEEEECC-CCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcC--
Confidence            32  2234578999999999999995 57889999999999999999999999999999998 489999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|+++++||.||+|+. +|++|+|.+||++|.++|.|.+++|++.+++    .+.+++++...         
T Consensus       386 --------~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  447 (497)
T PRK06145        386 --------EGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG---------  447 (497)
T ss_pred             --------CCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCC---------
Confidence                    8999999999999996 9999999999999999999999999998664    56788887643         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                             ...+.+++++++++.|+.|.     .+++|.++++.+...+||+.
T Consensus       448 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKi~  487 (497)
T PRK06145        448 -------ATLTLEALDRHCRQRLASFK-----VPRQLKVRDELPRNPSGKVL  487 (497)
T ss_pred             -------CCCCHHHHHHHHHHhhhcCC-----CCCEEEEeccCCCCCccccc
Confidence                   23467889999999998887     44789999999999999873

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.1e-45  Score=387.23  Aligned_cols=385  Identities=21%  Similarity=0.311  Sum_probs=296.7

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+.+..+.+.+.....+.++.+++.+....          ....+.++......   .          .......+++
T Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~----------~~~~~~~~~~  162 (508)
T TIGR02262       106 VFVSGELLPVIKAALGKSPHLEHRVVVGRPEA----------GEVQLAELLATESE---Q----------FKPAATQADD  162 (508)
T ss_pred             EEEchhhHHHHHHHHhcCCCccEEEEeCCCCc----------ccccHHHHhhcCCC---c----------cCCCCCCCCC
Confidence            33446666777766666777777776543211          11344444332111   0          1112345789


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHH-hhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec----chh
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVR  159 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~----~~~  159 (520)
                      +++++|||||||.||||++||+++...+.. ....+++.++|++++.+|++|.+++.. .+.++..|+++++.    ++.
T Consensus       163 ~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~  242 (508)
T TIGR02262       163 PAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD  242 (508)
T ss_pred             cEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHH
Confidence            999999999999999999999999877655 345668889999999999999999865 34567888888763    478


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.|++++||++.++|.++..+.......                                                 
T Consensus       243 ~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~-------------------------------------------------  273 (508)
T TIGR02262       243 AVFDRLRRHQPTIFYGVPTLYAAMLADPNLP-------------------------------------------------  273 (508)
T ss_pred             HHHHHHHHHCCcEEecchHHHHHHhcCcccc-------------------------------------------------
Confidence            8999999999999999999887654310000                                                 


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCCCC
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN  318 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~  318 (520)
                                                ......+|.+++||+++++.+ +.+.+.+|+++++.||+||++...+.+.....
T Consensus       274 --------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~  327 (508)
T TIGR02262       274 --------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV  327 (508)
T ss_pred             --------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC
Confidence                                      000112388899999999887 56667789999999999999876654443334


Q ss_pred             CccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccc
Q 010017          319 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR  398 (520)
Q Consensus       319 ~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~  398 (520)
                      ..+++|+|.+++.++|+| ++++++++|+.|||+++|++++.||+++|+.+++.|. ++||+|||++++++         
T Consensus       328 ~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~-~~~~~TGD~~~~~~---------  396 (508)
T TIGR02262       328 RYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQ-GEWTRSGDKYVRND---------  396 (508)
T ss_pred             CCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhh-cCceeccceEEEcC---------
Confidence            467899999999999999 6789999999999999999999999999999999884 79999999999998         


Q ss_pred             cCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcCCCcCCc
Q 010017          399 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADA  474 (520)
Q Consensus       399 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~  474 (520)
                       +|.+++.||.||+|+. +|++|+|.+||++|.++|+|.++++++.++    ..+.+++++.+..             ..
T Consensus       397 -~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~  461 (508)
T TIGR02262       397 -DGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ-------------DI  461 (508)
T ss_pred             -CccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC-------------cc
Confidence             8999999999999997 799999999999999999999999999754    3456777765431             00


Q ss_pred             cccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          475 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       475 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      .....+++++++++.|+.++     .++.+.++++.+...+||+.
T Consensus       462 ~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  501 (508)
T TIGR02262       462 DTALETELKEHVKDRLAPYK-----YPRWIVFVDDLPKTATGKIQ  501 (508)
T ss_pred             ccccHHHHHHHHHHhcccCC-----CCceEEEecCCCCCCCCcEe
Confidence            12345778888888888776     44678888998988999873

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=5e-46  Score=384.66  Aligned_cols=311  Identities=21%  Similarity=0.260  Sum_probs=251.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecch--
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV--  158 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~~--  158 (520)
                      ..++++++++|||||||.||||++||+++.+.+......+++.+ ++.++++|++|.+|+...+.++..|+++++.+.  
T Consensus       117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~  195 (452)
T PRK07445        117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKR  195 (452)
T ss_pred             CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHh
Confidence            35789999999999999999999999999887777666666654 467889999999999777788999999887542  


Q ss_pred             -hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          159 -RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       159 -~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                       .........++++++..+|+++..+.....                                                 
T Consensus       196 ~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~~-------------------------------------------------  226 (452)
T PRK07445        196 LKSGQELPPNPSDFFLSLVPTQLQRLLQLRP-------------------------------------------------  226 (452)
T ss_pred             ccchhhhhhhcCceEEEehHHHHHHHHhhCh-------------------------------------------------
Confidence             222233456788999999999987753100                                                 


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  317 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  317 (520)
                                                   ..+..+|.+++||+++++.+.+.+..+++++++.||+||++..++...+..
T Consensus       227 -----------------------------~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  277 (452)
T PRK07445        227 -----------------------------QWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDD  277 (452)
T ss_pred             -----------------------------hhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchh
Confidence                                         001123889999999998875545556899999999999876544333222


Q ss_pred             --CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCC
Q 010017          318 --NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  395 (520)
Q Consensus       318 --~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~  395 (520)
                        ...+++|+|.|+++++|+         +|+.|||+++||+++.||++++.      ..+|||+|||+|++++      
T Consensus       278 ~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~------  336 (452)
T PRK07445        278 FLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDA------  336 (452)
T ss_pred             hccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcC------
Confidence              235689999999999987         36789999999999999998643      2479999999999998      


Q ss_pred             ccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCc
Q 010017          396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  471 (520)
Q Consensus       396 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  471 (520)
                          ||+++|.||.||+||. +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.|++++..+             
T Consensus       337 ----dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-------------  398 (452)
T PRK07445        337 ----QGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-------------  398 (452)
T ss_pred             ----CCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-------------
Confidence                8999999999999996 9999999999999999999999999998765    46688876532             


Q ss_pred             CCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          472 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ..+.+++++++++.|+.|+     .+++|.++++.+...+||+
T Consensus       399 ----~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  436 (452)
T PRK07445        399 ----SISLEELKTAIKDQLSPFK-----QPKHWIPVPQLPRNPQGKI  436 (452)
T ss_pred             ----CCCHHHHHHHHHHhCCccc-----CCeEEEEecCCCCCCCccc
Confidence                2456889999999999887     5578999999999999986

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-45  Score=388.96  Aligned_cols=328  Identities=24%  Similarity=0.283  Sum_probs=277.1

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---ch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~  158 (520)
                      .++|+++|+|||||||.||+|++||.++..........+++..+|++++.+|++|.+++. .+..+..|+++++.   ++
T Consensus       166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~  244 (524)
T PRK06188        166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDP  244 (524)
T ss_pred             CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCH
Confidence            456799999999999999999999999998888888888889999999999999998874 45668889998874   57


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|++.++|+++..++......                                                
T Consensus       245 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------------------------------  276 (524)
T PRK06188        245 AEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------------------------------  276 (524)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc------------------------------------------------
Confidence            88999999999999999999998775431100                                                


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCC-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  316 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  316 (520)
                                                 ...+..+|.+++||+++++.. ..+.+.++..+++.||+||++..++..... 
T Consensus       277 ---------------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  329 (524)
T PRK06188        277 ---------------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRD  329 (524)
T ss_pred             ---------------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchh
Confidence                                       001122388899999998875 777778899999999999997655543321 


Q ss_pred             -----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          317 -----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       317 -----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                           ....+++|+|+|++.++|+|+ ++++++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|++++  
T Consensus       330 ~~~~~~~~~~~~G~p~~g~~v~i~~~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~--  405 (524)
T PRK06188        330 HDPDDPKRLTSCGRPTPGLRVALLDE-DGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDE--  405 (524)
T ss_pred             ccccccccCCccccccCCcEEEEEcC-CCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcC--
Confidence                 134578999999999999995 48899999999999999999999999999999888 489999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||++++.||.+|+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++++++++         
T Consensus       406 --------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  467 (524)
T PRK06188        406 --------DGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPG---------  467 (524)
T ss_pred             --------CccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCC---------
Confidence                    8999999999999996 9999999999999999999999999998653    57788887643         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                             ...+.+++++++++.++.++     .+.+|.++++.+...+||+.
T Consensus       468 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~P~t~~gKi~  507 (524)
T PRK06188        468 -------AAVDAAELQAHVKERKGSVH-----APKQVDFVDSLPLTALGKPD  507 (524)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCcccccc
Confidence                   23467789999999888887     55789999999999999863

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-45  Score=388.46  Aligned_cols=330  Identities=25%  Similarity=0.389  Sum_probs=277.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhh-hhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~~--  156 (520)
                      ....+++++++|||||||.||+|.+||+++.+........+++.++|++++.+|++|.+++...+ ..+..|+++++.  
T Consensus       167 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~  246 (523)
T PRK08316        167 ELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA  246 (523)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC
Confidence            45679999999999999999999999999988877777778899999999999999999886544 457789988874  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       +++.+++.++++++|++.++|.++..+.+.....                                             
T Consensus       247 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  281 (523)
T PRK08316        247 PDPELILRTIEAERITSFFAPPTVWISLLRHPDFD---------------------------------------------  281 (523)
T ss_pred             CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc---------------------------------------------
Confidence             6788999999999999999999987775421000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceecc
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                    ...+..+|.+++||++++..+ +.+.+.+ ++++++.||+||++.+....
T Consensus       282 ------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  331 (523)
T PRK08316        282 ------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVL  331 (523)
T ss_pred             ------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCcccccc
Confidence                                          001122388899999999887 5555656 78999999999998776654


Q ss_pred             CCC--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .+.  ....+++|+|+++++++|+|+ ++++++.|+.|||+++|++++.||+++++.+++.| .+|||+|||+|++++  
T Consensus       332 ~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~--  407 (523)
T PRK08316        332 GPEEHLRRPGSAGRPVLNVETRVVDD-DGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDE--  407 (523)
T ss_pred             CccccccccCCcccCCCCcEEEEEcC-CCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcC--
Confidence            332  234578999999999999994 58899999999999999999999999999999988 589999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||.+++.||.||+|+. +|++|+|.+||+.+.++|.|.+++|+|.+++.    +.++++++++         
T Consensus       408 --------~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  469 (523)
T PRK08316        408 --------EGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG---------  469 (523)
T ss_pred             --------CceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC---------
Confidence                    8999999999999996 99999999999999999999999999987654    6678887643         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                             ...+.+++.+++++.++.++     .+.++.++++.+...+||+
T Consensus       470 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gKi  508 (523)
T PRK08316        470 -------ATVTEDELIAHCRARLAGFK-----VPKRVIFVDELPRNPSGKI  508 (523)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCccce
Confidence                   23566788899988888776     5678999999999999986

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.1e-46  Score=429.30  Aligned_cols=329  Identities=27%  Similarity=0.415  Sum_probs=274.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++++|||||||.||||++||+++..+.......++..++|++++.+|++|.+++.. .+.++..|+++++.  
T Consensus       778 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~  857 (1146)
T PRK08633        778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPD  857 (1146)
T ss_pred             CCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCC
Confidence            456899999999999999999999999999988888778888899999999999999999876 56678889888763  


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|++.++|++++.+.+.....                                            
T Consensus       858 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  893 (1146)
T PRK08633        858 PTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH--------------------------------------------  893 (1146)
T ss_pred             CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC--------------------------------------------
Confidence              5678999999999999999999998775421000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++.++..
T Consensus       894 -------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  942 (1146)
T PRK08633        894 -------------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN  942 (1146)
T ss_pred             -------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence                                           011223488999999999987 566677899999999999998776544


Q ss_pred             CCC----------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC---CCccc
Q 010017          314 RPT----------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLN  380 (520)
Q Consensus       314 ~~~----------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~---~gw~~  380 (520)
                      .+.          ....+++|+|+|+++++|+|+++++++|+|+.|||+++|++++.||+++|+.|++.|..   +|||+
T Consensus       943 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~ 1022 (1146)
T PRK08633        943 LPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYV 1022 (1146)
T ss_pred             cCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEE
Confidence            321          12457899999999999999888999999999999999999999999999999988853   39999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCc--ccceEEEEeCCCc----eeEEEEE
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS--LIRQIVVIGQDQR----RPGAIIV  454 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p--~V~~~~Vvg~~~~----~~~a~vv  454 (520)
                      |||+|++|+          ||++++.||.||+||. +|++|+|.|||+++.+||  .+.+++|++.+++    .+.++++
T Consensus      1023 TGD~~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~ 1091 (1146)
T PRK08633       1023 TGDKGHLDE----------DGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHT 1091 (1146)
T ss_pred             CCCEEEEcC----------CceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEe
Confidence            999999999          8999999999999996 999999999999999999  5678999998765    3556666


Q ss_pred             cChHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          455 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +.                   ..+.+++++++++ .+++|+     .++.+.++++.+...+||+
T Consensus      1092 ~~-------------------~~~~~~l~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi 1132 (1146)
T PRK08633       1092 CG-------------------AEDVEELKRAIKESGLPNLW-----KPSRYFKVEALPLLGSGKL 1132 (1146)
T ss_pred             cC-------------------ccCHHHHHHHHHhcCCCccc-----CCcEEEEecCcCCCCCCCC
Confidence            42                   2245677777764 466666     5577999999999999986

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.4e-46  Score=465.34  Aligned_cols=329  Identities=20%  Similarity=0.259  Sum_probs=282.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|++||+|||||||.||||+++|+++.+.+......++++++|++++++|++|..+....+.++..|+++++.   
T Consensus      3233 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~ 3312 (3956)
T PRK12467       3233 RVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDND 3312 (3956)
T ss_pred             cCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcc
Confidence            45789999999999999999999999999999998888889999999999999999999887788899999998874   


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++..+|+++..+.+....                                             
T Consensus      3313 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------------------------------------- 3347 (3956)
T PRK12467       3313 LWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG--------------------------------------------- 3347 (3956)
T ss_pred             cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc---------------------------------------------
Confidence              467899999999999999999998877542100                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||+++++.+ +++.+.+ +++++|+||+||++..++.
T Consensus      3348 --------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 3395 (3956)
T PRK12467       3348 --------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTL 3395 (3956)
T ss_pred             --------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEE
Confidence                                            11222489999999999887 5666655 6789999999999876654


Q ss_pred             cCCCC-----CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCC-------ccc
Q 010017          313 RRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-------WLN  380 (520)
Q Consensus       313 ~~~~~-----~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~g-------w~~  380 (520)
                      .....     ....++|+|++|++++|+| +.++++|+|++|||+|+|+++++||+|+|++|+++|..++       ||+
T Consensus      3396 ~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yr 3474 (3956)
T PRK12467       3396 WKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYR 3474 (3956)
T ss_pred             EecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeec
Confidence            33211     2236899999999999998 5689999999999999999999999999999999996554       699


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC---CceeEEEEEcCh
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDK  457 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~  457 (520)
                      |||+|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .++++++|++..
T Consensus      3475 TGDl~~~~~----------dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~ 3543 (3956)
T PRK12467       3475 TGDLARYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPAD 3543 (3956)
T ss_pred             cchhheecC----------CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCC
Confidence            999999999          8999999999999997 99999999999999999999999999864   457889999864


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +                .....+++++++++.|+.|+.|     ..|..+++.+...|||+
T Consensus      3544 ~----------------~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~l~~lP~t~~GKi 3583 (3956)
T PRK12467       3544 P----------------QGDWRETLRDHLAASLPDYMVP-----AQLLVLAAMPLGPNGKV 3583 (3956)
T ss_pred             C----------------CcccHHHHHHHHhccCChhhCC-----CeeeeeccCCCCCCCcc
Confidence            3                2345788999999999999955     67899999999999997

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=5.8e-46  Score=432.43  Aligned_cols=331  Identities=19%  Similarity=0.246  Sum_probs=279.3

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-----
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-----  156 (520)
                      .+++++||+|||||||.||||+++|+++.+.+......+++.++|++++..|++|..+....+.++..|+++++.     
T Consensus       596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~  675 (1296)
T PRK10252        596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAH  675 (1296)
T ss_pred             CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhcc
Confidence            678999999999999999999999999999998888889999999999999999998887788889999999874     


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|++.++|+++..+........                                            
T Consensus       676 ~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~--------------------------------------------  711 (1296)
T PRK10252        676 RDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG--------------------------------------------  711 (1296)
T ss_pred             CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc--------------------------------------------
Confidence             46778999999999999999999987754311100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                   ....+..+|.+++||+++++.+ +.+.+.++++++|.||+||++..++...
T Consensus       712 -----------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~  762 (1296)
T PRK10252        712 -----------------------------ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYP  762 (1296)
T ss_pred             -----------------------------ccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeee
Confidence                                         0011223488999999999987 5566667899999999999987655433


Q ss_pred             CC-------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC------CCcccc
Q 010017          315 PT-------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNT  381 (520)
Q Consensus       315 ~~-------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~------~gw~~T  381 (520)
                      ..       .....++|+|++++.++|+| +.++++|+|+.|||+|+|+++++||+++|+.|++.|..      ++||+|
T Consensus       763 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~T  841 (1296)
T PRK10252        763 AFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRT  841 (1296)
T ss_pred             cccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEec
Confidence            21       12345799999999999999 56899999999999999999999999999999999854      359999


Q ss_pred             CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeC---------C-CceeEE
Q 010017          382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---------D-QRRPGA  451 (520)
Q Consensus       382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~---------~-~~~~~a  451 (520)
                      ||+|++++          ||.++++||+||+||+ +|++|+|.|||++|.+||.|.+++|++.         + .+.+++
T Consensus       842 GDl~~~~~----------~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva  910 (1296)
T PRK10252        842 GDVARWLD----------DGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVG  910 (1296)
T ss_pred             CceEEEcC----------CCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEE
Confidence            99999999          8999999999999997 9999999999999999999999987753         1 136889


Q ss_pred             EEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          452 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       452 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +|++..+                ...+.++++++++++|+.|+.|     ..|..+++.+...|||+
T Consensus       911 ~v~~~~~----------------~~~~~~~l~~~l~~~Lp~~~~P-----~~~~~~~~lP~t~~GKi  956 (1296)
T PRK10252        911 YLVSQSG----------------LPLDTSALQAQLRERLPPHMVP-----VVLLQLDQLPLSANGKL  956 (1296)
T ss_pred             EEEcCCC----------------CCCCHHHHHHHHHhhCchhcCC-----cEEEEecCCCCCCCcCh
Confidence            9987643                2346789999999999999854     67889999999999987

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.2e-46  Score=471.33  Aligned_cols=329  Identities=20%  Similarity=0.263  Sum_probs=285.1

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...+++++||+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.++....+.++..|+++++.   
T Consensus       651 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~  730 (5163)
T PRK12316        651 ELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPG  730 (5163)
T ss_pred             CCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCcc
Confidence            45789999999999999999999999999999998888889999999999999999999988888899999999874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|++.++|+++..+.....                                             
T Consensus       731 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------------------------------------  765 (5163)
T PRK12316        731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED---------------------------------------------  765 (5163)
T ss_pred             ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc---------------------------------------------
Confidence               56789999999999999999999987753200                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                      ...+..+|.+++||+++++++ +++.+.+ +++++|.||+||++..++
T Consensus       766 --------------------------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  813 (5163)
T PRK12316        766 --------------------------------VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVT  813 (5163)
T ss_pred             --------------------------------cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeee
Confidence                                            011223488999999999987 5665554 789999999999985444


Q ss_pred             ccC--CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC------CCCccccCc
Q 010017          312 ARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------EDGWLNTGD  383 (520)
Q Consensus       312 ~~~--~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~------~~gw~~TGD  383 (520)
                      ...  .......++|+|++|++++|+|+ .++++|.|+.|||+|+|+++++||+|+|+.|+++|.      .++||+|||
T Consensus       814 ~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGD  892 (5163)
T PRK12316        814 HWTCVEEGGDSVPIGRPIANLACYILDA-NLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGD  892 (5163)
T ss_pred             EEecccccCCCCCCccccCCCEEEEECC-CCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCc
Confidence            322  22234568999999999999995 589999999999999999999999999999999984      346999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA  463 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~  463 (520)
                      +|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+.+.++|+|++..+     
T Consensus       893 l~~~~~----------dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~-----  956 (5163)
T PRK12316        893 LARYRA----------DGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESE-----  956 (5163)
T ss_pred             cEEECC----------CCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCC-----
Confidence            999999          8999999999999997 999999999999999999999999999998899999998653     


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                 .....+++++++++.|+.|+.|     +.|.++++.+...|||+
T Consensus       957 -----------~~~~~~~l~~~l~~~Lp~y~vP-----~~i~~v~~lP~t~~GKi  995 (5163)
T PRK12316        957 -----------GGDWREALKAHLAASLPEYMVP-----AQWLALERLPLTPNGKL  995 (5163)
T ss_pred             -----------CCCCHHHHHHHHHhhCCCccCC-----CeEEEHhhCCCCCCCCh
Confidence                       2346788999999999999944     77999999999999997

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-44  Score=383.05  Aligned_cols=385  Identities=25%  Similarity=0.383  Sum_probs=290.9

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+.++.+.+.+.....+.++.++++.+.... ...  .......+++++.....   .          .......+++
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~  178 (542)
T PRK06018        115 VITDLTFVPILEKIADKLPSVERYVVLTDAAHM-PQT--TLKNAVAYEEWIAEADG---D----------FAWKTFDENT  178 (542)
T ss_pred             EEEccccHHHHHHHHhhCCCccEEEEecccccc-ccc--CccccccHHHHhccCCc---c----------cCcccCCccc
Confidence            334566777777776666777777766433211 100  01123456666543211   0          1112346788


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHH-HH-HHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chh
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLL-HQ-IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVR  159 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~-~~-~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~  159 (520)
                      +++|+|||||||.||||++||++.+ +. .......+++..+|+++..+|++|.+++...+.++..|+++++.    ++.
T Consensus       179 ~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~  258 (542)
T PRK06018        179 AAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGA  258 (542)
T ss_pred             eeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHH
Confidence            9999999999999999999999743 22 22334566788899999999999999987777778899988764    467


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.++++++|.+.++|+++..+........                                                
T Consensus       259 ~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------------  290 (542)
T PRK06018        259 SVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------------------------------------  290 (542)
T ss_pred             HHHHHHHhcCCceeecCcHHHHHHHhcccccC------------------------------------------------
Confidence            88999999999999999999988765321100                                                


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCCCC-
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  317 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  317 (520)
                                                 ..+..+|.+++||+++++.+ +.+.+ +++++++.||+||++.+++...... 
T Consensus       291 ---------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~  342 (542)
T PRK06018        291 ---------------------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPP  342 (542)
T ss_pred             ---------------------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccc
Confidence                                       01112388999999999987 45555 9999999999999987654432110 


Q ss_pred             ----------CCccccccCcCCeEEEEEeCCCCCcCCCC--CccEEEEecCCCCccccCCchhhhcccCCCCccccCcee
Q 010017          318 ----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  385 (520)
Q Consensus       318 ----------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g--~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg  385 (520)
                                ....++|+|.++++++|+|+ ++++++.+  +.|||+++|++++.|||++   +...++.+|||+|||++
T Consensus       343 ~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~  418 (542)
T PRK06018        343 FSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVA  418 (542)
T ss_pred             cccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEE
Confidence                      11357899999999999995 57777653  6899999999999999984   34456678999999999


Q ss_pred             eeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHH
Q 010017          386 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  461 (520)
Q Consensus       386 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  461 (520)
                      ++++          +|++++.||.+|+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++    ...++|++.++   
T Consensus       419 ~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---  484 (542)
T PRK06018        419 TIDA----------YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPG---  484 (542)
T ss_pred             EEcC----------CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCC---
Confidence            9998          8999999999999995 9999999999999999999999999998764    45677776543   


Q ss_pred             HHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          462 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                   ...+.+++++++++.++.|.     .+.+|.++++.+...+||+
T Consensus       485 -------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  523 (542)
T PRK06018        485 -------------ETATREEILKYMDGKIAKWW-----MPDDVAFVDAIPHTATGKI  523 (542)
T ss_pred             -------------CCCCHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCcchh
Confidence                         34566889999999888886     5578999999999999986

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-44  Score=383.37  Aligned_cols=331  Identities=26%  Similarity=0.447  Sum_probs=266.1

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC----C---CCCcEEEEEcChhhHHHHHH-hhhhhhcCe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----A---ENGDKFLSMLPPWHVYERAC-GYFIFSRGI  151 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~----~---~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~  151 (520)
                      ...++++++|+|||||||.||||++||+++..++......+.    .   ...+.+++.+|++|.+++.. .+.++..|+
T Consensus       200 ~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~  279 (557)
T PRK07059        200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGG  279 (557)
T ss_pred             CCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcc
Confidence            456899999999999999999999999999876544332221    1   12357788999999988754 445566677


Q ss_pred             eEEec----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccC
Q 010017          152 ELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  227 (520)
Q Consensus       152 ~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (520)
                      +.++.    ++..+++.++++++|.+.++|.++..+.......                              .      
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~------------------------------~------  323 (557)
T PRK07059        280 RNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFD------------------------------K------  323 (557)
T ss_pred             eEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcC------------------------------c------
Confidence            65542    4677899999999999999999988775421000                              0      


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccc
Q 010017          228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTES  306 (520)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~  306 (520)
                                                             ..+..+|.++.||+++++.+ +++.+.+|+++++.||+||+
T Consensus       324 ---------------------------------------~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  364 (557)
T PRK07059        324 ---------------------------------------LDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSET  364 (557)
T ss_pred             ---------------------------------------CCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccc
Confidence                                                   00111278899999998887 56677789999999999999


Q ss_pred             ccceeccCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCcee
Q 010017          307 SPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG  385 (520)
Q Consensus       307 ~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg  385 (520)
                      +.+++..... ....+++|.|+++++++++|+ .++++++|+.|||+++|+.++.||+++++.+.+.|..+|||+|||+|
T Consensus       365 ~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~  443 (557)
T PRK07059        365 SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD-DGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVG  443 (557)
T ss_pred             cchhhcCCCCCCCcCCcccCccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEE
Confidence            8776554332 234578999999999999984 58899999999999999999999999999999999889999999999


Q ss_pred             eeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHH
Q 010017          386 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL  461 (520)
Q Consensus       386 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~  461 (520)
                      ++++          ||+++++||++|+|+. +|++|+|.+||+++.+||.|.+++|+|.+++    .+.++++...    
T Consensus       444 ~~~~----------~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~----  508 (557)
T PRK07059        444 VMDE----------RGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD----  508 (557)
T ss_pred             EEcC----------CCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC----
Confidence            9998          8999999999999997 8999999999999999999999999997653    4666666542    


Q ss_pred             HHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          462 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                                   ...+.+++++++++.+..+.     ++..+.++++.+...+||+.
T Consensus       509 -------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GK~~  548 (557)
T PRK07059        509 -------------PALTEEDVKAFCKERLTNYK-----RPKFVEFRTELPKTNVGKIL  548 (557)
T ss_pred             -------------CCCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCccccee
Confidence                         23466789999999998887     45778899999999999873

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.6e-45  Score=454.90  Aligned_cols=334  Identities=20%  Similarity=0.263  Sum_probs=281.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...+++++||+|||||||.||||+++|+++.+.+......+++.++|+++++.|++|..+....+.++..|+++++.   
T Consensus       652 ~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~  731 (3956)
T PRK12467        652 ALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPD  731 (3956)
T ss_pred             CCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCcc
Confidence            45789999999999999999999999999999988888889999999999999999999988888899999999874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.|+++++|++.++|+++..+......                                            
T Consensus       732 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--------------------------------------------  767 (3956)
T PRK12467        732 CARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV--------------------------------------------  767 (3956)
T ss_pred             ccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc--------------------------------------------
Confidence               467899999999999999999999887542110                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ..+..+|.+++||+++++.+ +.+.+.+ +++++|.||+||++..++
T Consensus       768 ---------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  814 (3956)
T PRK12467        768 ---------------------------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVS  814 (3956)
T ss_pred             ---------------------------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhhee
Confidence                                             00111278999999999887 5555554 689999999999987665


Q ss_pred             ccCCCCC----CccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC-------CCccc
Q 010017          312 ARRPTCN----VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLN  380 (520)
Q Consensus       312 ~~~~~~~----~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~-------~gw~~  380 (520)
                      .......    ...++|+|+++++++|+|+ .++++|+|+.|||+|+|+++++||+++|+.|++.|..       ++||+
T Consensus       815 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yr  893 (3956)
T PRK12467        815 TYELSDEERDFGNVPIGQPLANLGLYILDH-YLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYR  893 (3956)
T ss_pred             eEecccccccCCCCcccCCcCCCEEEEECC-CCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEe
Confidence            5432211    2357999999999999995 5889999999999999999999999999999999843       35999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC---ceeEEEEEcCh
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDK  457 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~  457 (520)
                      |||+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++   +.++|++++..
T Consensus       894 TGDl~~~~~----------dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~  962 (3956)
T PRK12467        894 TGDLARYRA----------DGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAA  962 (3956)
T ss_pred             cCceeEEcC----------CCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecc
Confidence            999999998          8999999999999997 999999999999999999999999998543   47889998753


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ..           .........+++++++++.|+.|+.|     ..|.++++.+...|||+
T Consensus       963 ~~-----------~~~~~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~l~~lP~t~~GKi 1007 (3956)
T PRK12467        963 VA-----------DGAEHQATRDELKAQLRQVLPDYMVP-----AHLLLLDSLPLTPNGKL 1007 (3956)
T ss_pred             cc-----------cccccccCHHHHHHHHHhhCchhcCC-----ceEeeecccCCCCCCCc
Confidence            20           00112345788999999999999854     67899999999999997

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=8.4e-44  Score=377.84  Aligned_cols=332  Identities=27%  Similarity=0.421  Sum_probs=266.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh-----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeE
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL  153 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~  153 (520)
                      ...++++++++|||||||.||||++||+++.........     .......+++++.+|++|.+++.. .+.++..|+++
T Consensus       188 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~  267 (541)
T TIGR03205       188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLI  267 (541)
T ss_pred             CCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEE
Confidence            456789999999999999999999999998765432211     112234578999999999998776 44567888887


Q ss_pred             Eec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          154 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       154 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                      +..   ++..+++.|+++++|++.++|+++..+.+....   .                                     
T Consensus       268 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---~-------------------------------------  307 (541)
T TIGR03205       268 SLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL---E-------------------------------------  307 (541)
T ss_pred             EecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccc---c-------------------------------------
Confidence            764   578899999999999999999998776431000   0                                     


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCCeeeecccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPV  309 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~  309 (520)
                                                         ...+..+|.++.||+++++++.+ +.+.++.++++.||+||++..
T Consensus       308 -----------------------------------~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  352 (541)
T TIGR03205       308 -----------------------------------KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSP  352 (541)
T ss_pred             -----------------------------------ccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcc
Confidence                                               00011238889999999998854 445679999999999999876


Q ss_pred             eeccCCC-CCCccccccCcCCeEEEEEe-CCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeee
Q 010017          310 IAARRPT-CNVLGSVGHPINHTEIKIVD-AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  387 (520)
Q Consensus       310 ~~~~~~~-~~~~~~~G~~~~~~~v~ivd-~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~  387 (520)
                      ++..... ....+++|.|.+++.+++.+ .+.++++++|+.|||+++|++++.||+++|+.+++.|. ++||+|||++++
T Consensus       353 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~  431 (541)
T TIGR03205       353 GTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYM  431 (541)
T ss_pred             cccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEE
Confidence            6544322 23457899999999998875 35678899999999999999999999999999999985 789999999999


Q ss_pred             ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHH
Q 010017          388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  463 (520)
Q Consensus       388 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  463 (520)
                      ++          +|+++++||.||+||. +|++|+|.+||+++.+||.|.+++|++.+++    .+.+++++..+.    
T Consensus       432 ~~----------~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----  496 (541)
T TIGR03205       432 DT----------DGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGA----  496 (541)
T ss_pred             cC----------CceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCC----
Confidence            98          8999999999999996 8999999999999999999999999998653    466777775430    


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                 ...+.++++++++++|+.|+     .+++|.++++.+...+||+
T Consensus       497 -----------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~gK~  535 (541)
T TIGR03205       497 -----------KPFSLDELRAFLAGKLGKHE-----LPVAVEFVDELPRTPVGKL  535 (541)
T ss_pred             -----------CcCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCcccce
Confidence                       12466889999999999887     5578999999998999986

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.9e-45  Score=385.54  Aligned_cols=326  Identities=21%  Similarity=0.323  Sum_probs=258.9

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhh-hhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~~---  156 (520)
                      ..++++++++|||||||.||||+++|+++..........+++.++|++++.+|++|.+++...+ .++..|+++++.   
T Consensus       147 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~  226 (540)
T PRK13388        147 VDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKF  226 (540)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCC
Confidence            5679999999999999999999999999988887777888899999999999999999887654 368889998873   


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.++++++|++..+|..+..+......    ..                                         
T Consensus       227 ~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~----~~-----------------------------------------  261 (540)
T PRK13388        227 SASGFLDDVRRYGATYFNYVGKPLAYILATPER----PD-----------------------------------------  261 (540)
T ss_pred             CHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC----cc-----------------------------------------
Confidence            578899999999999999999887665431000    00                                         


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                    .....++. .+||+..+.....+.+.+++++++.||+||++.++....  
T Consensus       262 ------------------------------~~~~~l~~-~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--  308 (540)
T PRK13388        262 ------------------------------DADNPLRV-AFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP--  308 (540)
T ss_pred             ------------------------------ccccceEE-EECCCCCHHHHHHHHHHhCCceecccccccccceeecCC--
Confidence                                          00001143 345554444457777888999999999999986655322  


Q ss_pred             CCCccccccCcCCeEEE-----------EEeCCCCCcC-CCCCccEEEEe-cCCCCccccCCchhhhcccCCCCccccCc
Q 010017          317 CNVLGSVGHPINHTEIK-----------IVDAETNEVL-PAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~-----------ivd~~~~~~~-~~g~~GEl~v~-gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      ....+++|+|++++++.           ++| ++|+++ ++++.|||+++ |++++.||+++|+.+++.| .+|||+|||
T Consensus       309 ~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD  386 (540)
T PRK13388        309 GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGD  386 (540)
T ss_pred             CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccc
Confidence            23457899999997652           333 234444 45779999998 9999999999999999998 479999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  459 (520)
                      +|++++          ||++++.||+||+||. +|++|+|.+||+++.+||.|.+|+|+|.+++    .+.+++++.++ 
T Consensus       387 ~~~~~~----------dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~-  454 (540)
T PRK13388        387 LAYRDA----------DGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDG-  454 (540)
T ss_pred             eEEEcC----------CCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCC-
Confidence            999998          8999999999999997 9999999999999999999999999998754    45566666543 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHH--HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+.++++++++.+  |+.++     .+..+.++++.+...+||+
T Consensus       455 ---------------~~~~~~~l~~~l~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv  495 (540)
T PRK13388        455 ---------------ATFDPDAFAAFLAAQPDLGTKA-----WPRYVRIAADLPSTATNKV  495 (540)
T ss_pred             ---------------CcCCHHHHHHHHHhhccCCccc-----CCcEEEEeccCCCCCccee
Confidence                           345667888888753  66666     5577889999999999987

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-44  Score=392.02  Aligned_cols=333  Identities=16%  Similarity=0.122  Sum_probs=260.8

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~---  157 (520)
                      ..++|+++|+|||||||.||||+++|++++.........+++.++|++++++|+.|+++....+.++..|+++++.+   
T Consensus       353 ~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p  432 (728)
T PLN03052        353 QPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSP  432 (728)
T ss_pred             cCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCC
Confidence            35799999999999999999999999998776655555578889999999999999999876778899999998753   


Q ss_pred             -hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          158 -VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       158 -~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                       ...+++.++++++|++.++|+++..+.+....                              .+               
T Consensus       433 ~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~------------------------------~~---------------  467 (728)
T PLN03052        433 LGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM------------------------------AG---------------  467 (728)
T ss_pred             CCChHHHHHHHHCCCEEEECHHHHHHHHhcCCc------------------------------cc---------------
Confidence             45789999999999999999998876442000                              00               


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHH-HHHhC-Ceeeecccccccccceecc-
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG-VKVQVGYGLTESSPVIAAR-  313 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~-~~~~g-~~v~~~YG~TE~~~~~~~~-  313 (520)
                                                    ..+..+|.+++||++++++...+ .+.++ .++++.||+||+++.+... 
T Consensus       468 ------------------------------~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~  517 (728)
T PLN03052        468 ------------------------------LDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS  517 (728)
T ss_pred             ------------------------------CChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCC
Confidence                                          01122388999999998877444 44445 5799999999987544332 


Q ss_pred             CCCCCCccccccCcCCeEEEEEeCCCCCcCCCCC--ccEEEEecC--CCCccccCCchhhhcccC------CCCccccCc
Q 010017          314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGS--QVMQGYFKNPSATKQALD------EDGWLNTGD  383 (520)
Q Consensus       314 ~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~--~GEl~v~gp--~v~~GY~~~~~~t~~~f~------~~gw~~TGD  383 (520)
                      +......+++|.|.+|++++|+| ++|++++.|+  .|||+++++  ....+|+++. .+..-|.      .++||+|||
T Consensus       518 ~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGD  595 (728)
T PLN03052        518 LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGD  595 (728)
T ss_pred             CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCc
Confidence            22233467899999999999999 5688999985  599999865  3345677764 2333231      234999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHh-cCcccceEEEEeCCC-----ceeEEEEEcC-
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL-RSSLIRQIVVIGQDQ-----RRPGAIIVPD-  456 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~-~~p~V~~~~Vvg~~~-----~~~~a~vv~~-  456 (520)
                      ++++++          ||+++|+||.||+||. +|+||+|.|||++|. .||.|.+++|+|.++     +.+.++||++ 
T Consensus       596 l~~~d~----------dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~  664 (728)
T PLN03052        596 IFERTS----------GGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKD  664 (728)
T ss_pred             eEEECC----------CCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEec
Confidence            999999          8999999999999996 999999999999995 799999999999854     4577899876 


Q ss_pred             -hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 -KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                       ++                ...+.+++++++++.|.+...+.. ++++|.++++.+.+.|||+
T Consensus       665 ~~g----------------~~~~~~~L~~~i~~~i~~~l~~~~-~p~~i~~v~~lP~T~sGKi  710 (728)
T PLN03052        665 PPG----------------SNPDLNELKKIFNSAIQKKLNPLF-KVSAVVIVPSFPRTASNKV  710 (728)
T ss_pred             CCC----------------CCCCHHHHHHHHHHHHHhhcCCcc-CCCEEEEcCCCCCCCchHH
Confidence             22                234567888888887776554332 5688999999999999997

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.8e-45  Score=460.69  Aligned_cols=328  Identities=21%  Similarity=0.277  Sum_probs=283.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...+++++||+|||||||.||||+++|+++.+.+..+...+++.++|+++++.|+.|..+....+.++..|+++++.   
T Consensus      3192 ~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~ 3271 (5163)
T PRK12316       3192 RTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPE 3271 (5163)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCCEEEEcChh
Confidence            45789999999999999999999999999999998888889999999999999999998887788899999999884   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+.+.+++++++++..+|+++..+......                                            
T Consensus      3272 ~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~-------------------------------------------- 3307 (5163)
T PRK12316       3272 DWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDA-------------------------------------------- 3307 (5163)
T ss_pred             hcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcccc--------------------------------------------
Confidence               356788899999999999999998776432100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceecc
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                       ..+..+|.+++||+++++++.+.+. .+++++|+||+||++..++..
T Consensus      3308 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~-~~~~l~n~YG~TE~~~~~~~~ 3353 (5163)
T PRK12316       3308 ---------------------------------HRCTSLKRIVCGGEALPADLQQQVF-AGLPLYNLYGPTEATITVTHW 3353 (5163)
T ss_pred             ---------------------------------ccCCcceEEEEccccCCHHHHHHHH-hCCcEeeccCCCccEeeEeEE
Confidence                                             0112248999999999998744444 588999999999998776654


Q ss_pred             CC--CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC------CCccccCcee
Q 010017          314 RP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDIG  385 (520)
Q Consensus       314 ~~--~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~------~gw~~TGDlg  385 (520)
                      ..  ......++|+|+++++++|+| +.++++|+|++|||+|+|+++++||+|+|++|+++|..      ++||+|||+|
T Consensus      3354 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~ 3432 (5163)
T PRK12316       3354 QCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLA 3432 (5163)
T ss_pred             eccCCCCCCCccceecCCCEEEEEC-CCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceE
Confidence            32  223457899999999999999 56899999999999999999999999999999999954      3799999999


Q ss_pred             eeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHHHH
Q 010017          386 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       386 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~  465 (520)
                      ++++          ||.++|+||+|++||+ +|++|+|.|||++|.+||.|.+|+|++.+.++++|+|++..+       
T Consensus      3433 ~~~~----------dG~l~~~GR~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~~~~l~a~vv~~~~------- 3494 (5163)
T PRK12316       3433 RYRA----------DGVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE------- 3494 (5163)
T ss_pred             EECC----------CCCEEEecccCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEccCCeEEEEEEcCCc-------
Confidence            9998          8999999999999997 999999999999999999999999999888899999998643       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               .....+++++++++.|+.|+.|     ..|..+++.+...|||+
T Consensus      3495 ---------~~~~~~~l~~~l~~~Lp~ymvP-----~~~~~~~~lP~t~~GKv 3533 (5163)
T PRK12316       3495 ---------AGDLREALKAHLKASLPEYMVP-----AHLLFLERMPLTPNGKL 3533 (5163)
T ss_pred             ---------CcccHHHHHHHHHhhCCcccCc-----ceeeeHhhcCCCCCcch
Confidence                     2335678999999999999955     67888999999999997

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-44  Score=380.89  Aligned_cols=330  Identities=25%  Similarity=0.339  Sum_probs=263.2

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh-hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-  156 (520)
                      ...++++++|+|||||||.||||++||+++......... .....++|++++++|++|++++.. .+.++..|+++++. 
T Consensus       205 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~  284 (567)
T PRK06178        205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA  284 (567)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC
Confidence            356899999999999999999999999998876554332 356778999999999999999865 55678899998874 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|.+..+|..+..+......   .                           .             
T Consensus       285 ~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~---~---------------------------~-------------  321 (567)
T PRK06178        285 RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRF---A---------------------------E-------------  321 (567)
T ss_pred             CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCC---C---------------------------C-------------
Confidence              578899999999999999999887766431000   0                           0             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeE--EecCCCCChhH-HHHHHHhCCeeee-cccccccccce
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--VSGGGSLPMHI-DLFYEAIGVKVQV-GYGLTESSPVI  310 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~--~~gg~~l~~~~-~~~~~~~g~~v~~-~YG~TE~~~~~  310 (520)
                                                      ..+..++.+  .++++.+++.+ +.+.+.+|..++. .||+||++...
T Consensus       322 --------------------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~  369 (567)
T PRK06178        322 --------------------------------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD  369 (567)
T ss_pred             --------------------------------CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence                                            000011333  33457888777 5555667877665 79999987654


Q ss_pred             eccCC---C----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017          311 AARRP---T----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       311 ~~~~~---~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      .....   .    ....+++|+|+||++++++|++++++++.|+.|||+++|++++.||+++++.+++.|. +|||+|||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TGD  448 (567)
T PRK06178        370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTGD  448 (567)
T ss_pred             eeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhccc-CCceeecc
Confidence            43221   1    1234679999999999999988899999999999999999999999999999998884 79999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  459 (520)
                      +|++++          +|+++|+||+||+|+. +|++|+|.+||+++.++|.|.+++|+|.+++    .+.++|+++++ 
T Consensus       449 l~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-  516 (567)
T PRK06178        449 IGKIDE----------QGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG-  516 (567)
T ss_pred             eEEEec----------CCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC-
Confidence            999998          8999999999999997 8999999999999999999999999997653    46688887643 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+.++++++++++++.++.|      .+.++++.+...+||+
T Consensus       517 ---------------~~~~~~~l~~~~~~~l~~~~~p------~i~~v~~iP~t~~GKv  554 (567)
T PRK06178        517 ---------------ADLTAAALQAWCRENMAVYKVP------EIRIVDALPMTATGKV  554 (567)
T ss_pred             ---------------CcCCHHHHHHHHHhcCcccCCc------eEEEeccCCCCCccce
Confidence                           2356778999999888877633      3778899998999987

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-44  Score=385.41  Aligned_cols=329  Identities=32%  Similarity=0.483  Sum_probs=267.6

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh-hhcCCC-CCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEec--
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAE-NGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~-~~~~~~-~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~--  156 (520)
                      .++++++++|||||||.||||++||+++..+..... ..++.. .++++++++|++|.+++... +.++..|+++++.  
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  283 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK  283 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence            458999999999999999999999999875543322 223443 34688999999999988653 4567888888774  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.|+++++|++.++|+++..+.......                              .              
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------~--------------  319 (563)
T PRK06710        284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLK------------------------------E--------------  319 (563)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccc------------------------------c--------------
Confidence             5788999999999999999999998775421000                              0              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     ..+..+|.+++||++++..+ ..+.+.+|+++++.||+||++.......
T Consensus       320 -------------------------------~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  368 (563)
T PRK06710        320 -------------------------------YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF  368 (563)
T ss_pred             -------------------------------CChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence                                           00011277899999999887 4455567999999999999987544332


Q ss_pred             C-CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          315 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       315 ~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                      . .....+++|++.+++.++++|++++++++.|+.|||+++|+.++.||+++|+.+...|. +|||+|||++++++    
T Consensus       369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGD~~~~~~----  443 (563)
T PRK06710        369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTGDVGYMDE----  443 (563)
T ss_pred             ccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcc-cCcccccceEEEcC----
Confidence            2 22345789999999999999988899999999999999999999999999999998884 89999999999998    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            +|.+++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++.++           
T Consensus       444 ------~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  505 (563)
T PRK06710        444 ------DGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEG-----------  505 (563)
T ss_pred             ------CCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCC-----------
Confidence                  8999999999999996 8999999999999999999999999998653    46677776643           


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           ...+.+++++++++.++.++     .++.|.++++.+...+||+
T Consensus       506 -----~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKi  544 (563)
T PRK06710        506 -----TECSEEELNQFARKYLAAYK-----VPKVYEFRDELPKTTVGKI  544 (563)
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----CCcEEEEcccCCCCccchh
Confidence                 23567789999998888887     4467889999999999987

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-44  Score=380.35  Aligned_cols=332  Identities=21%  Similarity=0.261  Sum_probs=261.3

Q ss_pred             CCEEEEEecCCCCCCchhhhh--chHHHHHHH----HHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-
Q 010017           84 DDIATYVYTSGTTGNPKGVML--THKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  156 (520)
Q Consensus        84 ~d~a~i~~TSGTTG~PKgv~~--sh~~~~~~~----~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-  156 (520)
                      .++++|+|||||||.||||++  +|.++....    ......+++..+|++++.+|++|.+++...+..+..|+++++. 
T Consensus       148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~  227 (501)
T PRK13390        148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK  227 (501)
T ss_pred             cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC
Confidence            357999999999999999995  555554321    1123346778899999999999999876555556678888773 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|.+.++|+++..+.........                            .             
T Consensus       228 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------~-------------  266 (501)
T PRK13390        228 RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT----------------------------R-------------  266 (501)
T ss_pred             CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc----------------------------c-------------
Confidence              578899999999999999999999887542110000                            0             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                      ..+..+|.+++||++++..+ +.+.+.+|.++++.||+||+++++...
T Consensus       267 --------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  314 (501)
T PRK13390        267 --------------------------------YDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFID  314 (501)
T ss_pred             --------------------------------CChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEec
Confidence                                            00111278899999999887 455556789999999999998655433


Q ss_pred             CCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC--CCccccCceeeeccC
Q 010017          314 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPH  390 (520)
Q Consensus       314 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~--~gw~~TGDlg~~~~~  390 (520)
                      ... ....+++|+|.++ .++|+| ++++++++|+.|||+++|++++.||+++|+.|++.|..  ++||+|||+|++++ 
T Consensus       315 ~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~-  391 (501)
T PRK13390        315 SPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE-  391 (501)
T ss_pred             chhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC-
Confidence            322 1345789999999 799998 56889999999999999999999999999999988753  68999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               ||++++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++..+.       
T Consensus       392 ---------dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~-------  454 (501)
T PRK13390        392 ---------DGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI-------  454 (501)
T ss_pred             ---------CCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC-------
Confidence                     8999999999999996 8999999999999999999999999998764    456777765320       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                            .......++++++++++|+.|+     .+++|.++++.+...+||+-
T Consensus       455 ------~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKi~  496 (501)
T PRK13390        455 ------RGSDELARELIDYTRSRIAHYK-----APRSVEFVDELPRTPTGKLV  496 (501)
T ss_pred             ------CcchhhHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCcccee
Confidence                  0011124578888888888887     55789999999999999873

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=7.8e-44  Score=379.79  Aligned_cols=330  Identities=28%  Similarity=0.437  Sum_probs=266.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC----CCCC-cEEEEEcChhhHHHHHH-hhhhhhcCeeE
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----AENG-DKFLSMLPPWHVYERAC-GYFIFSRGIEL  153 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~----~~~~-d~~l~~lpl~h~~g~~~-~~~~~~~G~~~  153 (520)
                      ...++++++++|||||||.||||++||+++..........++    +..+ +++++.+|++|++++.. .+..+..|++.
T Consensus       204 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  283 (560)
T PRK08751        204 QIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCN  283 (560)
T ss_pred             CCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceE
Confidence            346799999999999999999999999999877665544443    3333 57788999999999765 34445556655


Q ss_pred             Ee-c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          154 MY-T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       154 ~~-~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                      ++ .   ++..+++.++++++|++.++|.++..+.+....   .                           .        
T Consensus       284 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---~---------------------------~--------  325 (560)
T PRK08751        284 HLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGF---D---------------------------Q--------  325 (560)
T ss_pred             EEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCc---C---------------------------C--------
Confidence            44 2   467889999999999999999998776542000   0                           0        


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  308 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~  308 (520)
                                                           ..+..+|.+++||++++..+ ..+.+.+|+++++.||+||++.
T Consensus       326 -------------------------------------~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  368 (560)
T PRK08751        326 -------------------------------------IDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSP  368 (560)
T ss_pred             -------------------------------------cchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCC
Confidence                                                 00112388899999999887 5666667999999999999987


Q ss_pred             ceeccCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeee
Q 010017          309 VIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  387 (520)
Q Consensus       309 ~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~  387 (520)
                      .++..... ....+++|.|.+++.++++| +++++++.|+.|||+++|+.++.||+++|+.+++.|+.+|||+|||+|++
T Consensus       369 ~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  447 (560)
T PRK08751        369 AACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM  447 (560)
T ss_pred             ceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence            66544322 23457899999999999999 56889999999999999999999999999999999988899999999999


Q ss_pred             ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHH
Q 010017          388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  463 (520)
Q Consensus       388 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  463 (520)
                      ++          +|++++.||.+|+|+. +|++|+|.+||++|..||.|.+|+|+|.+++    .+.++++...      
T Consensus       448 ~~----------~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~------  510 (560)
T PRK08751        448 DE----------QGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKD------  510 (560)
T ss_pred             cC----------CceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCC------
Confidence            98          8999999999999997 8999999999999999999999999998764    3445555431      


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                 ...+.+++++++++.++.|.     .++.|.++++.+...+||+
T Consensus       511 -----------~~~~~~~l~~~~~~~l~~~~-----~P~~v~~v~~lP~t~~gKv  549 (560)
T PRK08751        511 -----------PALTAEDVKAHARANLTGYK-----QPRIIEFRKELPKTNVGKI  549 (560)
T ss_pred             -----------CCCCHHHHHHHHHHhhhhcc-----CCeEEEEhhhCCCCccccc
Confidence                       23467789999999999988     5578999999999999986

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=3e-44  Score=378.06  Aligned_cols=333  Identities=25%  Similarity=0.284  Sum_probs=269.6

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----  156 (520)
                      ..++++++++|||||||.||+|++||+++..........++...+|++++++|++|..++...+.++..|+++++.    
T Consensus       138 ~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~  217 (502)
T TIGR01734       138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDI  217 (502)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHH
Confidence            4678999999999999999999999999998888777778888999999999999999888788889999999874    


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.+++++++.+.++|.++..+.......                                            
T Consensus       218 ~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~--------------------------------------------  253 (502)
T TIGR01734       218 TNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN--------------------------------------------  253 (502)
T ss_pred             hcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc--------------------------------------------
Confidence              4567889999999999999999886553210000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                     ...+..++.+++||++++..+ +.+.+.+ ++++++.||+||++..++.
T Consensus       254 -------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~  302 (502)
T TIGR01734       254 -------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTS  302 (502)
T ss_pred             -------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEE
Confidence                                           011223378889999999887 5666666 7899999999998754443


Q ss_pred             cCC-----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC---CCCccccCce
Q 010017          313 RRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD---EDGWLNTGDI  384 (520)
Q Consensus       313 ~~~-----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~---~~gw~~TGDl  384 (520)
                      ...     ......++|.+.|+++++|+|+ .++++++|+.|||+++|+.++.||+++|+.+.+.|.   ..+||+|||+
T Consensus       303 ~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDl  381 (502)
T TIGR01734       303 VKITQEILDQYPRLPIGFAKPDMNLFIMDE-EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDA  381 (502)
T ss_pred             EEccccccccCCccccccccCCCEEEEECC-CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCE
Confidence            221     1123357999999999999995 478999999999999999999999999999988762   3469999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC-----CceeEEEEEcChHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-----QRRPGAIIVPDKEE  459 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~-----~~~~~a~vv~~~~~  459 (520)
                      |++++          + ++++.||.||+|+. +|++|+|.+||+++.++|.|.+++|++..     .+.+.++|++..+.
T Consensus       382 g~~~~----------~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~  449 (502)
T TIGR01734       382 GTITD----------G-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETED  449 (502)
T ss_pred             EEEEC----------C-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccc
Confidence            99997          5 99999999999996 99999999999999999999999999843     24577888876531


Q ss_pred             HHHHHHHcCCCcCCccccC-hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          460 VLMAAKRLSIVHADASELS-KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      .             ..... ..++++++++.++.+.     ++++|..+++.+...+||+-
T Consensus       450 ~-------------~~~~~~~~~i~~~~~~~l~~~~-----~P~~~~~v~~lP~t~~gKv~  492 (502)
T TIGR01734       450 F-------------EKEFQLTKAIKKELKKSLPAYM-----IPRKFIYRDQLPLTANGKID  492 (502)
T ss_pred             c-------------ccchhhHHHHHHHHhhhChhhc-----CCcEEEEccccCCCCCCccc
Confidence            0             01111 2567788888887776     66889999999999999973

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.3e-44  Score=383.33  Aligned_cols=327  Identities=24%  Similarity=0.302  Sum_probs=253.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhh-hhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~-~~~~G~~~~~~--  156 (520)
                      ...++++++|+|||||||.||||++||+++.+++..+...+++.++|++++.+|++|.+++...+. ++..|+++++.  
T Consensus       195 ~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  274 (600)
T PRK08279        195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK  274 (600)
T ss_pred             CCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCC
Confidence            346799999999999999999999999999998888888889999999999999999999876554 57788888773  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|.+..+|+++..+........                                            
T Consensus       275 ~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~--------------------------------------------  310 (600)
T PRK08279        275 FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT--------------------------------------------  310 (600)
T ss_pred             CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc--------------------------------------------
Confidence             57789999999999999999998877654210000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCC-eeeecccccccccceecc
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~  313 (520)
                                                     .....++.  ++|+.+++.+ +++.+.++. .+++.||+||++..... 
T Consensus       311 -------------------------------~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-  356 (600)
T PRK08279        311 -------------------------------DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-  356 (600)
T ss_pred             -------------------------------ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-
Confidence                                           00011143  3466677665 677777876 59999999998753322 


Q ss_pred             CCCCCCccccccCcC----CeEEEEEeCCC--------C--CcCCCCCccEEE--EecCCCCccccCCchhhhcccC---
Q 010017          314 RPTCNVLGSVGHPIN----HTEIKIVDAET--------N--EVLPAGSKGIVK--VRGSQVMQGYFKNPSATKQALD---  374 (520)
Q Consensus       314 ~~~~~~~~~~G~~~~----~~~v~ivd~~~--------~--~~~~~g~~GEl~--v~gp~v~~GY~~~~~~t~~~f~---  374 (520)
                      .  ....+++|.+.+    +..+...+.++        +  .++++|+.|||+  +.|++++.|| ++++.|.+.|.   
T Consensus       357 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~  433 (600)
T PRK08279        357 V--FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV  433 (600)
T ss_pred             c--CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence            1  123456776655    33332222111        1  357889999998  6799999999 99999887762   


Q ss_pred             ---CCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----
Q 010017          375 ---EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----  447 (520)
Q Consensus       375 ---~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----  447 (520)
                         .++||+|||+|++++          ||++++.||.||+||+ +|++|+|.|||+++.+||.|.+|+|+|.+++    
T Consensus       434 ~~~~~~~~~TGDlg~~~~----------dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~  502 (600)
T PRK08279        434 FKKGDAWFNTGDLMRDDG----------FGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDG  502 (600)
T ss_pred             cCCCCceEeecceEEEcC----------CccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCC
Confidence               368999999999998          8999999999999997 8999999999999999999999999997532    


Q ss_pred             -eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          448 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       448 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                       ...++++...+                ...+.++++++++++|+.|+     .++.|.++++.+...+||+.
T Consensus       503 ~~~~~~vv~~~~----------------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~  554 (600)
T PRK08279        503 RAGMAAIVLADG----------------AEFDLAALAAHLYERLPAYA-----VPLFVRLVPELETTGTFKYR  554 (600)
T ss_pred             ccceeEEEecCC----------------ccCCHHHHHHHHHhhCcccc-----CCeEEEeecCCCCCcchhhh
Confidence             23344444322                34567899999999999998     55789999999999999973

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.3e-43  Score=378.26  Aligned_cols=334  Identities=22%  Similarity=0.335  Sum_probs=257.6

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhh-hhhcCeeEEe--cch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY--TAV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~-~~~~G~~~~~--~~~  158 (520)
                      ..+++++++|||||||.||||++||+++..........+++..+|++++.+|++|++++...+. .+..|.++++  .++
T Consensus       193 ~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~  272 (567)
T PLN02479        193 DEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTA  272 (567)
T ss_pred             CcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCH
Confidence            3457788999999999999999999998766555555667888999999999999999766544 3556665555  368


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|++.++|+++..+........                                               
T Consensus       273 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------  305 (567)
T PLN02479        273 KAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET-----------------------------------------------  305 (567)
T ss_pred             HHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc-----------------------------------------------
Confidence            899999999999999999999988754311000                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccC--C-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR--P-  315 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~--~-  315 (520)
                                                 ...+..++.++++|+++++.+.+.++..+.++++.||+||+++.++...  + 
T Consensus       306 ---------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  358 (567)
T PLN02479        306 ---------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPE  358 (567)
T ss_pred             ---------------------------cccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceecccc
Confidence                                       0011223778899999998875555556899999999999864433211  0 


Q ss_pred             -----CC---CCccccccCcCCeE-EEEEeCCCCCcCCCC--CccEEEEecCCCCccccCCchhhhcccCCCCccccCce
Q 010017          316 -----TC---NVLGSVGHPINHTE-IKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  384 (520)
Q Consensus       316 -----~~---~~~~~~G~~~~~~~-v~ivd~~~~~~~~~g--~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDl  384 (520)
                           ..   ....+.|.+.++.. ++|+|++++++++.+  +.|||+++|++++.|||++|+.|++.|. +|||+|||+
T Consensus       359 ~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDl  437 (567)
T PLN02479        359 WDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSGDL  437 (567)
T ss_pred             ccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceeccee
Confidence                 00   01135677888875 889987778888764  6799999999999999999999999994 899999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  460 (520)
                      |++++          +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++..+. 
T Consensus       438 ~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-  505 (567)
T PLN02479        438 GVKHP----------DGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGV-  505 (567)
T ss_pred             EEEcC----------CccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcc-
Confidence            99998          8999999999999996 9999999999999999999999999998653    577888876531 


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                ..+......+++++++++.|+.|+.     ++.+.+ ++.+...+||+
T Consensus       506 ----------~~~~~~~~~~~l~~~~~~~l~~~~~-----P~~~~~-~~iP~t~~gKv  547 (567)
T PLN02479        506 ----------DKSDEAALAEDIMKFCRERLPAYWV-----PKSVVF-GPLPKTATGKI  547 (567)
T ss_pred             ----------cccchhhhHHHHHHHHHhhcccccC-----CceEEe-ccCCCCCccCe
Confidence                      0000123456788888888888874     455655 56777888886

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-43  Score=370.28  Aligned_cols=331  Identities=20%  Similarity=0.267  Sum_probs=264.5

Q ss_pred             CCCEEEEEecCCCCCCchhhhh--chHHHHHH---HHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-
Q 010017           83 SDDIATYVYTSGTTGNPKGVML--THKNLLHQ---IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  156 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~--sh~~~~~~---~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-  156 (520)
                      .++.++++|||||||.||||++  +|.+....   .......+++.+++++++.+|++|.+++...+.++..|+++++. 
T Consensus       153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~  232 (511)
T PRK13391        153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME  232 (511)
T ss_pred             cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC
Confidence            4567899999999999999995  56665332   23344556778899999999999999988777788888888874 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|++.++|+++..+.+.......                                          
T Consensus       233 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------------------------  270 (511)
T PRK13391        233 HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRD------------------------------------------  270 (511)
T ss_pred             CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcc------------------------------------------
Confidence              678999999999999999999998776432110000                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +.+.+.+|..+++.||+||++.+....
T Consensus       271 -------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~  319 (511)
T PRK13391        271 -------------------------------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACD  319 (511)
T ss_pred             -------------------------------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEec
Confidence                                           001123488999999999987 555566799999999999998765543


Q ss_pred             CCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC-CccccCceeeeccCC
Q 010017          314 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-GWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~-gw~~TGDlg~~~~~~  391 (520)
                      ... ....+++|+|.++ .++|+| +++++++.|+.|||+++|+ ++.||+++++.+++.|..+ +||+|||+|++++  
T Consensus       320 ~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~--  394 (511)
T PRK13391        320 SEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE--  394 (511)
T ss_pred             CccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECC--
Confidence            322 2345789999999 689998 5688899999999999999 8999999999999988665 9999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|.+++.||.||+++. +|++|+|.+||+++.+||.|.+|+|++.+++    .+.+++++..+.        
T Consensus       395 --------~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~--------  457 (511)
T PRK13391        395 --------DGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV--------  457 (511)
T ss_pred             --------CccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC--------
Confidence                    8999999999999996 9999999999999999999999999998654    355777765320        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           .......+++++++++.++.|+     .++.|..+++.+...+||+
T Consensus       458 -----~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv  498 (511)
T PRK13391        458 -----DPGPALAAELIAFCRQRLSRQK-----CPRSIDFEDELPRLPTGKL  498 (511)
T ss_pred             -----CcccchHHHHHHHHHhhcccCc-----CCcEEEEeecCCCCCccce
Confidence                 0011234778888888888877     5578999999999999987

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7e-44  Score=376.25  Aligned_cols=328  Identities=21%  Similarity=0.260  Sum_probs=264.1

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHH--HHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe---c
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---T  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~--~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~---~  156 (520)
                      ..++.++|+|||||||.||||++||.....  ........+++.++|++++.+|++|.+++...+.++..|++++.   +
T Consensus       172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  251 (516)
T PRK13383        172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHF  251 (516)
T ss_pred             CCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCC
Confidence            346678999999999999999999984321  12222344567889999999999999999877778889999876   4


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      ++..+++.++++++|.+.++|.++..+........                                             
T Consensus       252 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  286 (516)
T PRK13383        252 DAEAALAQASLHRADAFTAVPVVLARILELPPRVR---------------------------------------------  286 (516)
T ss_pred             CHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc---------------------------------------------
Confidence            67889999999999999999999987754211000                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccCC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                  ....+..+|.+++||+++++++ +++.+.+|.++++.||+||++..+.....
T Consensus       287 ----------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~  338 (516)
T PRK13383        287 ----------------------------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPA  338 (516)
T ss_pred             ----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceecccc
Confidence                                        0011223488999999999887 66677789999999999999865544332


Q ss_pred             C-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          316 T-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       316 ~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      . ....+++|+|+|+++++|+|+ +++++++|+.|||+++|+.++.||++++..   .+ .+|||+|||+|++++     
T Consensus       339 ~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~-----  408 (516)
T PRK13383        339 DLRDAPETVGKPVAGCPVRILDR-NNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDN-----  408 (516)
T ss_pred             ccccCCCcccCCCCCcEEEEECC-CCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcC-----
Confidence            1 234578999999999999994 588999999999999999999999987642   23 479999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           +|++++.||.||+||. +|++|+|.+||.+|.+||.|.+++|++.+++    .+.++|++++.            
T Consensus       409 -----~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~------------  470 (516)
T PRK13383        409 -----AGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG------------  470 (516)
T ss_pred             -----CccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC------------
Confidence                 8999999999999997 9999999999999999999999999997654    46678887543            


Q ss_pred             cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                          ...+.++++++++++++.|.     ++.+|.++++.+...+||+-
T Consensus       471 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gKi~  510 (516)
T PRK13383        471 ----SGVDAAQLRDYLKDRVSRFE-----QPRDINIVSSIPRNPTGKVL  510 (516)
T ss_pred             ----CCCCHHHHHHHHHHhcccCC-----CCcEEEEeCCCCCCCCCcCc
Confidence                23456788999998888776     45789999999999999873

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-43  Score=356.74  Aligned_cols=304  Identities=26%  Similarity=0.326  Sum_probs=243.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe----
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY----  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~----  155 (520)
                      ...++|+++|+|||||||.||||++||+++..........+  ...++++..+|++|++++...+.++..|++.+.    
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~  108 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS  108 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence            44679999999999999999999999999988776655443  345788999999999998877777888888765    


Q ss_pred             --cchhhHHHHHhhhCC--cEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          156 --TAVRNLKDDLQRYQP--HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       156 --~~~~~~~~~i~~~~~--t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                        +++..+++.+++++.  ++...+|..+..+.....                                           
T Consensus       109 ~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-------------------------------------------  145 (358)
T PRK07824        109 AGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-------------------------------------------  145 (358)
T ss_pred             CCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-------------------------------------------
Confidence              357788999999984  455556665544322100                                           


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeeccccccccccee
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ....+..++.+++||+++++.+.+....+++++++.||+||++..+.
T Consensus       146 ---------------------------------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  192 (358)
T PRK07824        146 ---------------------------------ATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGCV  192 (358)
T ss_pred             ---------------------------------ccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCcC
Confidence                                             00112234889999999999886655667999999999999865332


Q ss_pred             ccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       312 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                                ..|.|++++++++.+            |||+++|+.++.||+++++.+  .|..+|||+|||+|++ +  
T Consensus       193 ----------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~--  245 (358)
T PRK07824        193 ----------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-D--  245 (358)
T ss_pred             ----------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-e--
Confidence                      358899999999832            899999999999999998754  4556889999999999 6  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|.+++.||.||+||. +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++++...+         
T Consensus       246 --------~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~---------  307 (358)
T PRK07824        246 --------DGVLTVLGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG---------  307 (358)
T ss_pred             --------CCEEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC---------
Confidence                    7999999999999996 9999999999999999999999999998664    45566665432         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                             ...+.+++++++++.|+.|+     .+.+|.++++.+...+||+
T Consensus       308 -------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  346 (358)
T PRK07824        308 -------PAPTLEALRAHVARTLDRTA-----APRELHVVDELPRRGIGKV  346 (358)
T ss_pred             -------CCcCHHHHHHHHHhhCcccc-----CCCEEEEecCCCCCCCccc
Confidence                   34567889999999999887     4578999999999999986

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.4e-43  Score=405.17  Aligned_cols=321  Identities=22%  Similarity=0.317  Sum_probs=262.7

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---  156 (520)
                      ..++|+++|+|||||||.||||++||+++.++.......++..++|++++.+|++|.+++.. .+.++..|+++++.   
T Consensus       790 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~  869 (1140)
T PRK06814        790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSP  869 (1140)
T ss_pred             CCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCc
Confidence            47899999999999999999999999999988888888888999999999999999999854 55678899988774   


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       +.+.+.+.++++++|.+..+|+++..+.+....                                              
T Consensus       870 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~----------------------------------------------  903 (1140)
T PRK06814        870 LHYRIIPELIYDTNATILFGTDTFLNGYARYAHP----------------------------------------------  903 (1140)
T ss_pred             ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhccc----------------------------------------------
Confidence             245678899999999999999998776432000                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     ..+..+|.+++||+++++++ +.+.+.+|+++++.||+||++..++...
T Consensus       904 -------------------------------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  952 (1140)
T PRK06814        904 -------------------------------YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNT  952 (1140)
T ss_pred             -------------------------------ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecC
Confidence                                           01122388999999999887 5566778999999999999987766555


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      +.....+++|+|.|++++++.+.+     +.|+.|||+++|++++.||+++++.+......+|||+|||+|++|+     
T Consensus       953 ~~~~~~~~vG~p~~g~~~~~~~~~-----~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~----- 1022 (1140)
T PRK06814        953 PMHNKAGTVGRLLPGIEYRLEPVP-----GIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDE----- 1022 (1140)
T ss_pred             CCCCCCCcCCccCCCCeEEEeecC-----CCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECC-----
Confidence            444556899999999999998743     1367899999999999999998754432223589999999999999     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCcee----EEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP----GAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~----~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           ||++++.||.||+||. +|++|+|.|||+++.+||.|.+++|++.+++..    .+++. .              
T Consensus      1023 -----dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~-~-------------- 1081 (1140)
T PRK06814       1023 -----EGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT-A-------------- 1081 (1140)
T ss_pred             -----CCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc-C--------------
Confidence                 8999999999999996 999999999999999999999999999876543    33322 1              


Q ss_pred             cCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          .+.+.+++++++++. ++.|+     .+++|.++++.+...+||+
T Consensus      1082 ----~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi 1121 (1140)
T PRK06814       1082 ----SDATRAAFLAHAKAAGASELM-----VPAEIITIDEIPLLGTGKI 1121 (1140)
T ss_pred             ----CCcCHHHHHHHHHHcCCCccc-----CCcEEEEecCcCCCCCCCC
Confidence                234567888888864 77676     4578999999999999997

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-43  Score=371.38  Aligned_cols=331  Identities=22%  Similarity=0.258  Sum_probs=269.5

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHH---HHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~---~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-  156 (520)
                      ..++++++++|||||||.||+|++||.+.   ..........+++.+++++++.+|++|..+....+.++..|+++++. 
T Consensus       149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~  228 (509)
T PRK12406        149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP  228 (509)
T ss_pred             CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc
Confidence            35789999999999999999999876653   33333445567888999999999999998887777778888888773 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|++.++|+++..++.......                                           
T Consensus       229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------  265 (509)
T PRK12406        229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR-------------------------------------------  265 (509)
T ss_pred             CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc-------------------------------------------
Confidence              57889999999999999999999987754211000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                    ....+..+|.+++||+++++++ ..+.+.+++.+++.||+||++.+++..
T Consensus       266 ------------------------------~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  315 (509)
T PRK12406        266 ------------------------------AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFAT  315 (509)
T ss_pred             ------------------------------ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecC
Confidence                                          0001123488999999999988 455556799999999999998765543


Q ss_pred             CCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCc-cccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ-GYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~-GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      ... ....+++|.|.++++++++|+ ++++++.|+.|||+++|++++. ||+++|+.++..+ .++||+|||++++++  
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~--  391 (509)
T PRK12406        316 SEDALSHPGTVGKAAPGAELRFVDE-DGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDA--  391 (509)
T ss_pred             cccccccCCCcCccCCCcEEEEECC-CCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcC--
Confidence            322 234578999999999999994 5889999999999999999875 9999999888766 589999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              +|.+++.||.||+||. +|++|+|.+||++|.++|.|.+++|++.+++    .+.+++++...         
T Consensus       392 --------~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  453 (509)
T PRK12406        392 --------DGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG---------  453 (509)
T ss_pred             --------CceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC---------
Confidence                    8999999999999996 9999999999999999999999999998654    36677776532         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                             ...+.+++++++++.++.|.     .+..+.++++.+...+||+
T Consensus       454 -------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~  492 (509)
T PRK12406        454 -------ATLDEADIRAQLKARLAGYK-----VPKHIEIMAELPREDSGKI  492 (509)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCccch
Confidence                   23467889999999998887     4467888999999999986

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-43  Score=367.12  Aligned_cols=309  Identities=25%  Similarity=0.387  Sum_probs=258.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecchh
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR  159 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~~~  159 (520)
                      ...++++++++|||||||.||||++||+++..........++..++|+++..+|++|.+++...+.++..|+++++.+..
T Consensus       131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~  210 (458)
T PRK09029        131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQ  210 (458)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChH
Confidence            34689999999999999999999999999999888888888889999999999999999987777778999999987767


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.+.  +++.+..+|+++..+......                                                  
T Consensus       211 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~--------------------------------------------------  238 (458)
T PRK09029        211 PLEQALA--GCTHASLVPTQLWRLLDNRSE--------------------------------------------------  238 (458)
T ss_pred             HHHHHHh--hceeeecChHHHHHHHhcccc--------------------------------------------------
Confidence            7777774  788888899988766432100                                                  


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCCCC
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV  319 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~  319 (520)
                                                   ...+|.+++||+++++.+.+.+..+|+++++.||+||++...+....  ..
T Consensus       239 -----------------------------~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~--~~  287 (458)
T PRK09029        239 -----------------------------PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRA--DG  287 (458)
T ss_pred             -----------------------------CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCC--CC
Confidence                                         00138889999999998866666779999999999999865543332  22


Q ss_pred             ccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCcccc
Q 010017          320 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC  399 (520)
Q Consensus       320 ~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~  399 (520)
                      ..++|+|+++++++|++            |||+++|+.++.||+++++.+.... .+|||+|||+|+++           
T Consensus       288 ~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-----------  343 (458)
T PRK09029        288 LAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-----------  343 (458)
T ss_pred             CCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-----------
Confidence            35699999999999975            7999999999999999998886544 58999999999998           


Q ss_pred             CcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCCcc
Q 010017          400 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADAS  475 (520)
Q Consensus       400 ~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~  475 (520)
                      ||++++.||+||+||. +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|+++.                  
T Consensus       344 ~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~------------------  404 (458)
T PRK09029        344 NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS------------------  404 (458)
T ss_pred             CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc------------------
Confidence            3999999999999996 8999999999999999999999999998765    4667777652                  


Q ss_pred             ccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          476 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       476 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      ..+.++++++++++|+.|+     ++.+|.++++.+...+||+.
T Consensus       405 ~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~~p~t~~gKi~  443 (458)
T PRK09029        405 EAAVVNLAEWLQDKLARFQ-----QPVAYYLLPPELKNGGIKIS  443 (458)
T ss_pred             ccCHHHHHHHHHhhchhcc-----CCeEEEEecccccCcCCCcC
Confidence            2466789999999999998     55778999988888888873

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-43  Score=370.07  Aligned_cols=333  Identities=22%  Similarity=0.309  Sum_probs=263.5

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHH------HHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~------~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..++.++++|||||||.||+|+++|.++....      ...........++++++.+|++|.+++...+.++..|+++++
T Consensus       138 ~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  217 (502)
T PRK08276        138 DETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVV  217 (502)
T ss_pred             CCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEE
Confidence            45778999999999999999999887654221      111122223467899999999999998887778889998887


Q ss_pred             c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          156 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       156 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .   ++..+++.++++++|++.++|+++..+.........                                        
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------  257 (502)
T PRK08276        218 MEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRA----------------------------------------  257 (502)
T ss_pred             cCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCC----------------------------------------
Confidence            4   578899999999999999999998877542100000                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccccee
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ...+..+|.+++||++++.++ +.+.+.+|.++++.||+||++.++.
T Consensus       258 ---------------------------------~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  304 (502)
T PRK08276        258 ---------------------------------RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTV  304 (502)
T ss_pred             ---------------------------------CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeE
Confidence                                             001122389999999999988 5555567888999999999987555


Q ss_pred             ccCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          312 ARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       312 ~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      ..... ....+++|+|+ ++.++++|+ ++++++.|+.|||+++|+.++.||+++|+.+.+.+..+|||+|||++++++ 
T Consensus       305 ~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-  381 (502)
T PRK08276        305 ITSEDWLAHPGSVGKAV-LGEVRILDE-DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE-  381 (502)
T ss_pred             ecCccccccCCCcceec-ccEEEEECC-CCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC-
Confidence            43322 23457899999 889999984 578999999999999999999999999999999998789999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               +|.+++.||.||+++. +|++|+|.+||.++.++|.|.+|+|++..++    .+.++|++....       
T Consensus       382 ---------~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------  444 (502)
T PRK08276        382 ---------DGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA-------  444 (502)
T ss_pred             ---------CcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC-------
Confidence                     8999999999999996 9999999999999999999999999998654    577888876430       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            .......++++++++++|..++     .+..|.++++.+...+||+
T Consensus       445 ------~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~lP~t~~GKi  485 (502)
T PRK08276        445 ------DAGDALAAELIAWLRGRLAHYK-----CPRSIDFEDELPRTPTGKL  485 (502)
T ss_pred             ------CCChhhHHHHHHHHHhhccCCC-----CCcEEEEecCCCCCcccch
Confidence                  0011112356677776666655     5688999999999999986

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=9.8e-44  Score=361.83  Aligned_cols=338  Identities=19%  Similarity=0.231  Sum_probs=278.8

Q ss_pred             cCCCCCCCEEEEEecCCCCCCchhhhhchHHH-HHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEe
Q 010017           78 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY  155 (520)
Q Consensus        78 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~-~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~  155 (520)
                      +...+.+|+.+|+|||||||.|||+.+|+... +..+.....++++.++|+++++..+.|+.+..+ .+.++..|+++++
T Consensus       233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl  312 (626)
T KOG1175|consen  233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL  312 (626)
T ss_pred             ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence            55678999999999999999999999998764 445556677789999999999999999999887 4558999999887


Q ss_pred             c-----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          156 T-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       156 ~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                      +     ++..+++.+.++++|.+++.|+.++.+.....+...                                      
T Consensus       313 ~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~--------------------------------------  354 (626)
T KOG1175|consen  313 YEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT--------------------------------------  354 (626)
T ss_pred             EcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc--------------------------------------
Confidence            4     578899999999999999999999877543211100                                      


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCC-eeeeccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSP  308 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~  308 (520)
                                                         ..++..+|.+.+.|+++.++. ..+.+.++. +|++.||+||+|.
T Consensus       355 -----------------------------------~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~  399 (626)
T KOG1175|consen  355 -----------------------------------SYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGG  399 (626)
T ss_pred             -----------------------------------ccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCc
Confidence                                               011122499999999998876 566667787 6999999999998


Q ss_pred             ceeccCCCC--CCccccccCcCCeEEEEEeCCCCCcCCCC-CccEEEEec--C-CCCccccCCchhhhcccCC--CCccc
Q 010017          309 VIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAG-SKGIVKVRG--S-QVMQGYFKNPSATKQALDE--DGWLN  380 (520)
Q Consensus       309 ~~~~~~~~~--~~~~~~G~~~~~~~v~ivd~~~~~~~~~g-~~GEl~v~g--p-~v~~GY~~~~~~t~~~f~~--~gw~~  380 (520)
                      .++...+..  ..+++.+.|.+++.+.|+|+ .|++++++ +.|||+++.  | +.+++||+|++....+...  .|+|.
T Consensus       400 ~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~  478 (626)
T KOG1175|consen  400 ICITPKPGKLPIKPGSAGKPFPGYDVQILDE-NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYF  478 (626)
T ss_pred             eeeeccCCCCCcCccccCCCCCCcceEEECC-CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEE
Confidence            877766555  77899999999999999996 68888876 899999986  3 7899999999966555433  79999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  456 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~  456 (520)
                      |||.+++|+          ||+++++||.||+|++ +|+++++.|||+++.+||.|.|++|||.+++    .+.|||++.
T Consensus       479 tGD~~~rd~----------dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~  547 (626)
T KOG1175|consen  479 TGDGGRRDE----------DGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLK  547 (626)
T ss_pred             ecCceEEcC----------CceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEc
Confidence            999999998          8999999999999996 8999999999999999999999999999875    466999987


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ++                 ..+.++|++.+++.+++-..|.+ .+++|.++++.+.+.+||+
T Consensus       548 ~g-----------------~~~~~~L~kel~~~VR~~igp~a-~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  548 SG-----------------SHDPEQLTKELVKHVRSVIGPYA-VPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             CC-----------------CCChHHHHHHHHHHHHhhcCccc-ccceeEecCCCCccccchh
Confidence            64                 33555666666666665555543 6688999999999999986

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-42  Score=369.60  Aligned_cols=329  Identities=24%  Similarity=0.344  Sum_probs=255.3

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEe--cch
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--TAV  158 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~--~~~  158 (520)
                      +.+++++|+|||||||.||||+++|+++..........+++..++++++.+|++|.+++...+.. +..|..++.  .++
T Consensus       180 ~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~  259 (545)
T PRK08162        180 DEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDP  259 (545)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCH
Confidence            45689999999999999999999999987665555555667788999999999999988765444 444444433  368


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|++.++|+++..+.+......                                               
T Consensus       260 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------  292 (545)
T PRK08162        260 KLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-----------------------------------------------  292 (545)
T ss_pred             HHHHHHHHHcCCeEEEechHHHHHHHhCccccc-----------------------------------------------
Confidence            899999999999999999999988764210000                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  317 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  317 (520)
                                                  ..+...+.+++||+.+++.+.+.++.+++++++.||+||+++.++.+.... 
T Consensus       293 ----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  344 (545)
T PRK08162        293 ----------------------------AGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPE  344 (545)
T ss_pred             ----------------------------cCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeecccccc
Confidence                                        001112456788999988876556667999999999999865444321110 


Q ss_pred             ----------CCccccccCcC-CeEEEEEeCCCCCcCCC-C-CccEEEEecCCCCccccCCchhhhcccCCCCccccCce
Q 010017          318 ----------NVLGSVGHPIN-HTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  384 (520)
Q Consensus       318 ----------~~~~~~G~~~~-~~~v~ivd~~~~~~~~~-g-~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDl  384 (520)
                                ...++.|.+.+ +..++++|++++++++. | +.|||+++|+.++.||+++++.+.+.| .+|||+|||+
T Consensus       345 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl  423 (545)
T PRK08162        345 WDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDL  423 (545)
T ss_pred             cccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCce
Confidence                      11245566654 34678899777888876 4 469999999999999999999999999 4799999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  460 (520)
                      |++++          +|+++++||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++..+  
T Consensus       424 ~~~d~----------dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~--  490 (545)
T PRK08162        424 AVLHP----------DGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDG--  490 (545)
T ss_pred             EEEcC----------CccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCC--
Confidence            99999          8999999999999995 9999999999999999999999999997653    56778877643  


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                                    ...+.+++++++++.|+.|..|     +.+.+ .+.+...|||+.
T Consensus       491 --------------~~~~~~~l~~~~~~~l~~~~~P-----~~~~~-~~iP~t~~gK~~  529 (545)
T PRK08162        491 --------------ASATEEEIIAHCREHLAGFKVP-----KAVVF-GELPKTSTGKIQ  529 (545)
T ss_pred             --------------CCCCHHHHHHHHHHhcccccCC-----cEEEe-cccCCCCCcCCc
Confidence                          2346788999999999988855     45554 567777888863

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.2e-43  Score=445.12  Aligned_cols=329  Identities=21%  Similarity=0.303  Sum_probs=280.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...+++++|++|||||||.||||+++|+++.+.+......+++.++|++++..|++|..+....+.++..|+++++.   
T Consensus      1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~ 1348 (4334)
T PRK05691       1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPG 1348 (4334)
T ss_pred             CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCcc
Confidence            34689999999999999999999999999999888888888999999999999999998887788889999999874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|++..+|+++..+......                                            
T Consensus      1349 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------------------------------------------- 1384 (4334)
T PRK05691       1349 EHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA-------------------------------------------- 1384 (4334)
T ss_pred             ccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--------------------------------------------
Confidence               467899999999999999999999877532000                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ..+..+|.+++||+++++.+ +.+.+.+ +++++|.||+||++..++
T Consensus      1385 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 1431 (4334)
T PRK05691       1385 ---------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVT 1431 (4334)
T ss_pred             ---------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeee
Confidence                                             11222488999999999987 5666666 689999999999987655


Q ss_pred             ccC--CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC-------CCccccC
Q 010017          312 ARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLNTG  382 (520)
Q Consensus       312 ~~~--~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~-------~gw~~TG  382 (520)
                      ...  .......++|+|++++.++|+|+ .++++|.|++|||+|+|+++++||+|+|+.|+++|..       .+||+||
T Consensus      1432 ~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691       1432 HWQCQAEDGERSPIGRPLGNVLCRVLDA-ELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred             eeecccccCCCCcccceeCCCEEEEECC-CCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence            432  22234568999999999999994 5899999999999999999999999999999999843       3599999


Q ss_pred             ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC---ceeEEEEEcChHH
Q 010017          383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEE  459 (520)
Q Consensus       383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~~~  459 (520)
                      |+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++   +.+.+++++..+ 
T Consensus      1511 Dl~~~~~----------dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~- 1578 (4334)
T PRK05691       1511 DRARWNA----------DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAG- 1578 (4334)
T ss_pred             ceEEECC----------CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCC-
Confidence            9999999          8999999999999997 999999999999999999999999997643   468888887543 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+.+++++++++.|+.|+.|     ..|..+++.+...|||+
T Consensus      1579 ---------------~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~~~~lP~t~~GKi 1617 (4334)
T PRK05691       1579 ---------------QEAEAERLKAALAAELPEYMVP-----AQLIRLDQMPLGPSGKL 1617 (4334)
T ss_pred             ---------------CCCCHHHHHHHHHHhCccccCC-----cEEEEccccCCCCCCCc
Confidence                           2345678999999999999955     67889999999999997

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.6e-42  Score=363.36  Aligned_cols=335  Identities=22%  Similarity=0.281  Sum_probs=269.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++++++++|||||||.||+|.+||+++..........+++..+++++..+|++|..+....+.++..|+++++.   
T Consensus       139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~  218 (503)
T PRK04813        139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKD  218 (503)
T ss_pred             cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChh
Confidence            34678999999999999999999999999998887777778888999999999999999887777788899988763   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.+++++++.+..+|+++..+.......                                           
T Consensus       219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-------------------------------------------  255 (503)
T PRK04813        219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN-------------------------------------------  255 (503)
T ss_pred             hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-------------------------------------------
Confidence               4677889999999999999999887653321000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                      ...+..+|.++++|+++++.+ +.+.+.+ ++++++.||+||++..++
T Consensus       256 --------------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  303 (503)
T PRK04813        256 --------------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT  303 (503)
T ss_pred             --------------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEE
Confidence                                            011223488899999999887 5666677 789999999999876544


Q ss_pred             ccCC-----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC---CCccccCc
Q 010017          312 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGD  383 (520)
Q Consensus       312 ~~~~-----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~---~gw~~TGD  383 (520)
                      ....     ......++|++.++++++|+| +++.++++|+.|||+++|++++.||+++++.|.+.|..   .+||+|||
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD  382 (503)
T PRK04813        304 SIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGD  382 (503)
T ss_pred             EEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCc
Confidence            3221     112345799999999999999 56888999999999999999999999999999988732   35999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~  459 (520)
                      +|++ +          +|++++.||.||+|+. +|++|+|.+||+++.++|.|.+++|++.++    +.+.++++++.+.
T Consensus       383 ~~~~-~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  450 (503)
T PRK04813        383 AGYL-E----------DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEED  450 (503)
T ss_pred             eEEe-e----------CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccc
Confidence            9999 7          7999999999999997 999999999999999999999999998654    4577888876431


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                      .            .....-.++++++++++++.+.     .+++|.++++.+...|||+.
T Consensus       451 ~------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  493 (503)
T PRK04813        451 F------------EREFELTKAIKKELKERLMEYM-----IPRKFIYRDSLPLTPNGKID  493 (503)
T ss_pred             c------------cccchhHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCCCCCc
Confidence            0            0001112456677776666666     56889999999999999973

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-43  Score=444.76  Aligned_cols=331  Identities=22%  Similarity=0.240  Sum_probs=279.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++++|||+|||||||.||||+++|+++++.+......++++++|+++...|+.|..+....+.++..|+++++.   
T Consensus      3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~ 3944 (4334)
T PRK05691       3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNA 3944 (4334)
T ss_pred             CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCcc
Confidence            45789999999999999999999999999999988888889999999999999999999988888889999998874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|++..+|+++..+.....                                             
T Consensus      3945 ~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~--------------------------------------------- 3979 (4334)
T PRK05691       3945 IAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR--------------------------------------------- 3979 (4334)
T ss_pred             ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc---------------------------------------------
Confidence               36789999999999999999999887643200                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ..+..+|.+++||++++.++ ++|.+.+ +++++|.||+||++..++
T Consensus      3980 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~ 4026 (4334)
T PRK05691       3980 ---------------------------------QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVA 4026 (4334)
T ss_pred             ---------------------------------ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEE
Confidence                                             11122488999999999887 6676654 789999999999987665


Q ss_pred             ccCCC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC-------CCCccc
Q 010017          312 ARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-------EDGWLN  380 (520)
Q Consensus       312 ~~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~-------~~gw~~  380 (520)
                      .....    .....++|+|++++.+.|+| +.++++|.|.+|||+|+|+++++||+|+|++|+++|.       .++|||
T Consensus      4027 ~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yr 4105 (4334)
T PRK05691       4027 FFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYR 4105 (4334)
T ss_pred             EEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeec
Confidence            43321    12235799999999999998 5689999999999999999999999999999999994       357999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeC---CCceeEEEEEcCh
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---DQRRPGAIIVPDK  457 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~---~~~~~~a~vv~~~  457 (520)
                      |||+|++++          ||.++|+||+||+||+ +|++|++.|||++|.++|+|.+|+|+..   ..+.+.|++++..
T Consensus      4106 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~ 4174 (4334)
T PRK05691       4106 TGDLARRRS----------DGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQ 4174 (4334)
T ss_pred             cCcceeecC----------CCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCc
Confidence            999999998          8999999999999997 9999999999999999999999998753   3457889999764


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ..             .......+++++++++.|+.|+.|     ..|..+++.+...|||+
T Consensus      4175 ~~-------------~~~~~~~~~l~~~l~~~Lp~ymvP-----~~~~~~~~lP~t~~GKi 4217 (4334)
T PRK05691       4175 TV-------------LAQGALLERIKQRLRAELPDYMVP-----LHWLWLDRLPLNANGKL 4217 (4334)
T ss_pred             cc-------------ccchHHHHHHHHHHHhhCChhhcC-----cceeecccCCCCCCCcc
Confidence            31             001123467889999999999966     66888899999999996

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-43  Score=373.45  Aligned_cols=332  Identities=24%  Similarity=0.363  Sum_probs=254.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh-hcCCCCCcEEEEEcChhhHHHHHHhh-hhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-~~~~~~~d~~l~~lpl~h~~g~~~~~-~~~~~G~~~~~~-  156 (520)
                      ...++++++|+|||||||.||||++||+++...+..... .+++.++|++++++|++|.+++...+ .++..|+++.+. 
T Consensus       172 ~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~  251 (579)
T PRK09192        172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLP  251 (579)
T ss_pred             CCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeC
Confidence            346799999999999999999999999999988877766 78889999999999999999987543 457788887653 


Q ss_pred             ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                            ++..+++.+.++++++++. |.++..++......    ...                      .          
T Consensus       252 ~~~~~~~~~~~~~~i~~~~~t~~~~-~~~~~~l~~~~~~~----~~~----------------------~----------  294 (579)
T PRK09192        252 TRDFARRPLQWLDLISRNRGTISYS-PPFGYELCARRVNS----KDL----------------------A----------  294 (579)
T ss_pred             HHHHHHCHHHHHHHHHhcCcEEEeC-CcHHHHHHHHhhcc----ccc----------------------c----------
Confidence                  3567889999999987665 44443332210000    000                      0          


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh---C---Ceeeecccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQVGYGL  303 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~---g---~~v~~~YG~  303 (520)
                                                         ...+..+|.+++||+++++.+ ..+.+.+   |   ..+++.||+
T Consensus       295 -----------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~  339 (579)
T PRK09192        295 -----------------------------------ELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGL  339 (579)
T ss_pred             -----------------------------------ccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccccccc
Confidence                                               001112388899999999886 4555544   2   248999999


Q ss_pred             cccccceeccCCCC----------------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec
Q 010017          304 TESSPVIAARRPTC----------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  355 (520)
Q Consensus       304 TE~~~~~~~~~~~~----------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g  355 (520)
                      ||++..++......                            ...+++|++.|+++++|+|+ +++.++.|+.|||+++|
T Consensus       340 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~-~~~~~~~g~~Gel~i~g  418 (579)
T PRK09192        340 AEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNE-AGMPLPERVVGHICVRG  418 (579)
T ss_pred             ccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECC-CCCCCCCCCEEEEEecC
Confidence            99976555432211                            01257899999999999995 57889999999999999


Q ss_pred             CCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcc
Q 010017          356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL  435 (520)
Q Consensus       356 p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~  435 (520)
                      +++++|||++ +.+.+.+..+|||+|||+|++ +          +|+++|+||+||+||+ +|++|+|.|||++|.+||.
T Consensus       419 ~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~  485 (579)
T PRK09192        419 PSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-L----------DGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPE  485 (579)
T ss_pred             CchhhhhcCC-ccccccccCCceeeccceeeE-E----------CCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCC
Confidence            9999999999 677888888999999999998 6          7999999999999997 9999999999999999999


Q ss_pred             cc--eEEEEeCCCc---eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHH-HHhccCCCccccEEEec-
Q 010017          436 IR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR-KWTSKCSFQIGPIHVVD-  508 (520)
Q Consensus       436 V~--~~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~~~~~~-  508 (520)
                      |.  +|+|++.+++   .+.+++++...                ...+.+++++++++.+. .+..+     ..+.+++ 
T Consensus       486 V~~~~~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~~~~-----~~i~~~~~  544 (579)
T PRK09192        486 LRSGDAAAFSIAQENGEKIVLLVQCRIS----------------DEERRGQLIHALAALVRSEFGVE-----AAVELVPP  544 (579)
T ss_pred             ccCCcEEEEEeccCCCeeEEEEEEecCC----------------ChHHHHHHHHHHHHHHHHHhCCC-----ceEEEeCC
Confidence            98  8999997654   45666665432                23356788889988875 45433     4466665 


Q ss_pred             -CCCCcCCCcc
Q 010017          509 -EPFTVNFLCL  518 (520)
Q Consensus       509 -~~~~~~~g~l  518 (520)
                       +.+...+||+
T Consensus       545 ~~lP~t~~GKv  555 (579)
T PRK09192        545 HSLPRTSSGKL  555 (579)
T ss_pred             CCcCCCCCcch
Confidence             6777788886

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-42  Score=369.30  Aligned_cols=328  Identities=27%  Similarity=0.456  Sum_probs=264.0

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcC---CCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~  156 (520)
                      ..++++++|+|||||||.||+|++||+++..++......+.   ...++.++..+|++|++++.. .+..+..|+++++.
T Consensus       203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~  282 (560)
T PRK08974        203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLI  282 (560)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEe
Confidence            46799999999999999999999999999876654433222   344678889999999998765 44456777776553


Q ss_pred             ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                          ++..+++.++++++|.+.++|+++..+.......                                          
T Consensus       283 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------------------  320 (560)
T PRK08974        283 TNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ------------------------------------------  320 (560)
T ss_pred             cCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc------------------------------------------
Confidence                4667889999999999999999998775421000                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccccee
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ...+..+|.+++||+++++.+ ..+.+.+|+++++.||+||++..++
T Consensus       321 ---------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~  367 (560)
T PRK08974        321 ---------------------------------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVS  367 (560)
T ss_pred             ---------------------------------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceee
Confidence                                             001112388899999999887 5556667999999999999987766


Q ss_pred             ccCCCC-CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          312 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       312 ~~~~~~-~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      .+.... ...+++|.|+|++.++|+|+ ++++++.|+.|||+++|+.++.||+++++.+++.| .+|||+|||++++++ 
T Consensus       368 ~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~-  444 (560)
T PRK08974        368 VNPYDLDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE-  444 (560)
T ss_pred             ccCCCCcccCCccccCcCCCEEEEECC-CCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC-
Confidence            544322 34578999999999999995 57899999999999999999999999999999888 589999999999998 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~  466 (520)
                               +|.++++||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.+++.    +.++++...         
T Consensus       445 ---------~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~---------  505 (560)
T PRK08974        445 ---------EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD---------  505 (560)
T ss_pred             ---------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC---------
Confidence                     8999999999999997 89999999999999999999999999986643    334444321         


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ...+.+++++++++.+..|.     .+.++.++++.+...+||+
T Consensus       506 --------~~~~~~~l~~~l~~~l~~~~-----~P~~~~~~~~lP~t~~GK~  544 (560)
T PRK08974        506 --------PSLTEEELITHCRRHLTGYK-----VPKLVEFRDELPKSNVGKI  544 (560)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEhhhCCCCCCCcE
Confidence                    22456788889998888777     4577888999999999986

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-41  Score=359.74  Aligned_cols=384  Identities=19%  Similarity=0.223  Sum_probs=284.1

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+.++.+.+.++....+.++.++.+++......     ....+++++++........             ... ...|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~  164 (533)
T PRK07798        104 LVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDL-----LPGAVDYEDALAAGSPERD-------------FGE-RSPD  164 (533)
T ss_pred             EEEchhhHHHHHHHhccCCCccEEEEecCCccccc-----CCccccHHHHHhccCCcCC-------------CCC-CCCC
Confidence            33445666777777666677777877654322110     1123567777653221100             011 2234


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhc---------CC------CCCcEEEEEcChhhHHHHHHhhhhhhcC
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV---------PA------ENGDKFLSMLPPWHVYERACGYFIFSRG  150 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---------~~------~~~d~~l~~lpl~h~~g~~~~~~~~~~G  150 (520)
                      .++|+|||||||.||+|++||+++..........+         .+      ..+++++..+|++|.+++...+.++..|
T Consensus       165 ~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G  244 (533)
T PRK07798        165 DLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSG  244 (533)
T ss_pred             ceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHhcC
Confidence            57899999999999999999999876544322211         11      5678999999999999998888889999


Q ss_pred             eeEEecc-----hhhHHHHHhhhCCcEEEecchHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCccc
Q 010017          151 IELMYTA-----VRNLKDDLQRYQPHYMISVPLVYETLY-SGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  224 (520)
Q Consensus       151 ~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (520)
                      +++++.+     +..+++.++++++|.+..+|..+...+ .....    .                              
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~----~------------------------------  290 (533)
T PRK07798        245 QTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEA----R------------------------------  290 (533)
T ss_pred             ceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcc----c------------------------------
Confidence            9998854     778999999999999999987764322 11100    0                              


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccc
Q 010017          225 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYG  302 (520)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG  302 (520)
                                                              ....+..+|.+++||+++++.+ +++.+.+ +..+++.||
T Consensus       291 ----------------------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG  330 (533)
T PRK07798        291 ----------------------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIG  330 (533)
T ss_pred             ----------------------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence                                                    0001123488999999999987 4555566 789999999


Q ss_pred             ccccccceeccCCCCCCccccc--cCcCCeEEEEEeCCCCCcCCCCCc--cEEEEecCCCCccccCCchhhhcccCC---
Q 010017          303 LTESSPVIAARRPTCNVLGSVG--HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDE---  375 (520)
Q Consensus       303 ~TE~~~~~~~~~~~~~~~~~~G--~~~~~~~v~ivd~~~~~~~~~g~~--GEl~v~gp~v~~GY~~~~~~t~~~f~~---  375 (520)
                      +||++..........  ....|  .+.++..++++|++ ++++++|+.  |+++ +++.++.||+++|+.|++.|..   
T Consensus       331 ~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~~~-~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~  406 (533)
T PRK07798        331 SSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLDED-GNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDG  406 (533)
T ss_pred             ccccccccccCCCCC--CccCCCCccCCCceEEEECCC-CCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCC
Confidence            999865544332211  12333  78889999999954 678899987  6666 5678999999999999988853   


Q ss_pred             CCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEE
Q 010017          376 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA  451 (520)
Q Consensus       376 ~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a  451 (520)
                      ++||+|||++++++          +|++++.||.||+|+. +|++|+|.+||+++.++|.|.+++|++.+++    .+.+
T Consensus       407 ~~~~~TGD~~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~  475 (533)
T PRK07798        407 VRYAIPGDRARVEA----------DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVA  475 (533)
T ss_pred             CceEEcCcEEEEcC----------CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEE
Confidence            46999999999998          8999999999999995 9999999999999999999999999998654    4667


Q ss_pred             EEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          452 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       452 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ++++.++                ...+.+++++++++.|+.|.     .+..|.++++.+...+||+
T Consensus       476 ~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~  521 (533)
T PRK07798        476 VVQLREG----------------ARPDLAELRAHCRSSLAGYK-----VPRAIWFVDEVQRSPAGKA  521 (533)
T ss_pred             EEEECCC----------------CCCCHHHHHHHHhhhcccCC-----CCeEEEEcccCCCCCcchh
Confidence            7777643                23567889999999888777     5578899999999999986

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4e-42  Score=355.33  Aligned_cols=320  Identities=26%  Similarity=0.366  Sum_probs=265.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc-h
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-V  158 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~-~  158 (520)
                      ....+++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.++..|+++++.+ .
T Consensus       107 ~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  186 (436)
T TIGR01923       107 SFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF  186 (436)
T ss_pred             cCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH
Confidence            346789999999999999999999999999988888888889999999999999999999877777899999998853 4


Q ss_pred             hhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHH
Q 010017          159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  238 (520)
Q Consensus       159 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (520)
                      ..+++.++++++|.+.++|+++..+......                                                 
T Consensus       187 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-------------------------------------------------  217 (436)
T TIGR01923       187 NQLLEMIANERVTHISLVPTQLNRLLDEGGH-------------------------------------------------  217 (436)
T ss_pred             HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC-------------------------------------------------
Confidence            5889999999999999999998777542100                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC-
Q 010017          239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  317 (520)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  317 (520)
                                                    ...+|.+++||+++++.+.++...+|+++++.||+||++...+...... 
T Consensus       218 ------------------------------~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  267 (436)
T TIGR01923       218 ------------------------------NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEML  267 (436)
T ss_pred             ------------------------------CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCcccc
Confidence                                          0113888999999999986666667999999999999987655433221 


Q ss_pred             CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCcc
Q 010017          318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  397 (520)
Q Consensus       318 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~  397 (520)
                      ....++|.|++++++++.+.+.      ++.|||+++|+.++.||+++++.+...+ .+|||+|||++++++        
T Consensus       268 ~~~~~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~--------  332 (436)
T TIGR01923       268 HARPDVGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDG--------  332 (436)
T ss_pred             ccccCCCccCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcC--------
Confidence            2223489999999999844222      2689999999999999999888887655 579999999999998        


Q ss_pred             ccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017          398 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  473 (520)
Q Consensus       398 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  473 (520)
                        ||.+++.||.+|+||. +|++|+|.+||.++.++|.|.+++|++.+++    .+.+++++..                
T Consensus       333 --dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~----------------  393 (436)
T TIGR01923       333 --EGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES----------------  393 (436)
T ss_pred             --CCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC----------------
Confidence              8999999999999996 9999999999999999999999999998654    3557777652                


Q ss_pred             ccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCccc
Q 010017          474 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  519 (520)
Q Consensus       474 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l~  519 (520)
                        ..+.+++.+++++.++.++     .+.+|.++++.+...+||+-
T Consensus       394 --~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~iP~t~~GK~~  432 (436)
T TIGR01923       394 --DISQAKLIAYLTEKLAKYK-----VPIAFEKLDELPYNASGKIL  432 (436)
T ss_pred             --CCCHHHHHHHHHHhhhCCC-----CCeEEEEecCCCCCCCCcee
Confidence              2456788999999998887     44778899999999999873

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-41  Score=361.82  Aligned_cols=332  Identities=23%  Similarity=0.316  Sum_probs=240.4

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh-hcC-----CCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeE
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVP-----AENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL  153 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-~~~-----~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~  153 (520)
                      ..++|+++|+|||||||.||||++||+++.+++..... .+.     ...++++++++|++|.+++.. .+.++..|+++
T Consensus       157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~  236 (578)
T PRK05850        157 RDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPA  236 (578)
T ss_pred             CCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcE
Confidence            46789999999999999999999999999877655433 222     345789999999999999876 56678899988


Q ss_pred             Eec-------chhhHHHHHhhhCCcEEEecchHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccc
Q 010017          154 MYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSG-IQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT  225 (520)
Q Consensus       154 ~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (520)
                      ++.       ++..+++.+.+++++. ..+|..+..+... .....     .                      .     
T Consensus       237 ~~~~~~~~~~~p~~~~~~i~~~~~~~-~~~p~~~~~~~~~~~~~~~-----~----------------------~-----  283 (578)
T PRK05850        237 VLTSPVAFLQRPARWMQLLASNPHAF-SAAPNFAFELAVRKTSDDD-----M----------------------A-----  283 (578)
T ss_pred             EEeCHHHHHHCHHHHHHHHHHcCCeE-EeCCcHHHHHHHHhcchhh-----h----------------------c-----
Confidence            874       3667888999999875 5677664433221 00000     0                      0     


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh---C---Ceee
Q 010017          226 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQ  298 (520)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~---g---~~v~  298 (520)
                                                              ...+..+|.+++||+++++.+ +++.+.+   |   ..++
T Consensus       284 ----------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (578)
T PRK05850        284 ----------------------------------------GLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIR  323 (578)
T ss_pred             ----------------------------------------CcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCccccc
Confidence                                                    000112388999999999887 5555555   3   3689


Q ss_pred             ecccccccccceeccCCCCC-------------------------CccccccCcCCeEEEEEeCCCCCcCCCCCccEEEE
Q 010017          299 VGYGLTESSPVIAARRPTCN-------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV  353 (520)
Q Consensus       299 ~~YG~TE~~~~~~~~~~~~~-------------------------~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v  353 (520)
                      +.||+||++..+........                         ...++|.|. +.+++++|++++.++++|+.|||++
T Consensus       324 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v  402 (578)
T PRK05850        324 PSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWV  402 (578)
T ss_pred             CccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEE
Confidence            99999998754433221100                         012345543 5789999987788999999999999


Q ss_pred             ecCCCCccccCCchhhhcccC-----------CCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeec
Q 010017          354 RGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  422 (520)
Q Consensus       354 ~gp~v~~GY~~~~~~t~~~f~-----------~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  422 (520)
                      +|++++.|||++|+.|++.|.           .+|||+|||+|+++           +|+++|.||+||+||+ +|++|+
T Consensus       403 ~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-----------~G~l~~~GR~~d~i~~-~G~~i~  470 (578)
T PRK05850        403 HGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-----------EGELFIVGRIKDLLIV-DGRNHY  470 (578)
T ss_pred             ecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-----------CCEEEEEcccccEEEE-CCeecC
Confidence            999999999999999999884           25799999999886           5999999999999997 999999


Q ss_pred             cHHHHHHHhcCcccceEEEEeCCCc---eeEEEEEcChHHHHHHHHHcCCCcCCccccC------hHHHHHHHHHHHHHH
Q 010017          423 PLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELS------KEKTISLLYGELRKW  493 (520)
Q Consensus       423 p~eIE~~l~~~p~V~~~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~  493 (520)
                      |.|||++|.+||.+ +++|++.+++   .+.++|++...                ...+      ..++++.+...+.++
T Consensus       471 p~eIE~~l~~~~~~-~~~v~~v~~~~~~~~~a~v~~~~~----------------~~~~~~~~~~~~~l~~~v~~~l~~~  533 (578)
T PRK05850        471 PDDIEATIQEITGG-RVAAISVPDDGTEKLVAIIELKKR----------------GDSDEEAMDRLRTVKREVTSAISKS  533 (578)
T ss_pred             HHHHHHHHHHhcCC-cEEEEEecCCCceEEEEEEEeccc----------------cCcchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999985 4888887653   56788877543                1111      223444444444433


Q ss_pred             hccCCCccccEEEec--CCCCcCCCcc
Q 010017          494 TSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       494 ~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                      .   ..++..+.+++  +.+...+||+
T Consensus       534 ~---~~~~~~~~~~~~~~iP~t~~GKi  557 (578)
T PRK05850        534 H---GLSVADLVLVAPGSIPITTSGKI  557 (578)
T ss_pred             h---CCCceEEEEeCCCCcCCCCCchH
Confidence            2   22456677775  5677788886

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.1e-41  Score=355.01  Aligned_cols=337  Identities=23%  Similarity=0.349  Sum_probs=250.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCC-cEEEEEcChhhHHHHHHh-hhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-DKFLSMLPPWHVYERACG-YFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~-d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~-  156 (520)
                      ...++|+++|+|||||||.||||++||+++...+......+++.++ |++++++|++|.+++... +.++..|++++.. 
T Consensus       148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~  227 (545)
T PRK07768        148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT  227 (545)
T ss_pred             CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence            4467999999999999999999999999998888777777777776 899999999999998764 4468888888764 


Q ss_pred             ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                            ++..+.+.+++++++++.+.|..+..+...+.+....                           +         
T Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------~---------  271 (545)
T PRK07768        228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP---------------------------G---------  271 (545)
T ss_pred             HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc---------------------------c---------
Confidence                  3456778899999999877766665543322110000                           0         


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHH---HhCC---eeeecccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYE---AIGV---KVQVGYGL  303 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~---~~g~---~v~~~YG~  303 (520)
                                                         ...+..+|.+++||+++++... .+.+   .+|.   .+++.||+
T Consensus       272 -----------------------------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~  316 (545)
T PRK07768        272 -----------------------------------AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM  316 (545)
T ss_pred             -----------------------------------CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence                                               0011123889999999998874 4443   2555   49999999


Q ss_pred             cccccceeccCCC--------------------------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCC
Q 010017          304 TESSPVIAARRPT--------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  357 (520)
Q Consensus       304 TE~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~  357 (520)
                      ||++..++.....                          ....+++|+|.++++++++| ++++++++|+.|||+++|+.
T Consensus       317 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~  395 (545)
T PRK07768        317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGES  395 (545)
T ss_pred             cccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCc
Confidence            9997655433211                          11346799999999999999 56789999999999999999


Q ss_pred             CCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccc
Q 010017          358 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  437 (520)
Q Consensus       358 v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~  437 (520)
                      ++.||++++... ..++.+|||+|||+|++++          +|+++++||.||+|++ +|++|+|.+||+++.+||.|.
T Consensus       396 ~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~  463 (545)
T PRK07768        396 VTPGYLTMDGFI-PAQDADGWLDTGDLGYLTE----------EGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVR  463 (545)
T ss_pred             ccccccCCCCCc-ccccCCCeeeccceEEEec----------CCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccc
Confidence            999999865443 3444689999999999998          8999999999999997 899999999999999999999


Q ss_pred             eEEEEeCC--Cc----eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--C
Q 010017          438 QIVVIGQD--QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--E  509 (520)
Q Consensus       438 ~~~Vvg~~--~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~  509 (520)
                      +++|++.+  +.    .+..++.+...               .......++.+++++.+......   ++.++.+++  +
T Consensus       464 ~~~vv~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~~~~~~---~p~~v~~v~~~~  525 (545)
T PRK07768        464 PGNAVAVRLDAGHSREGFAVAVESNAF---------------EDPAEVRRIRHQVAHEVVAEVGV---RPRNVVVLGPGS  525 (545)
T ss_pred             cceEEEEEecCCCCceEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHHHhCC---CccEEEEeCCCc
Confidence            98888642  22    23333333211               01112335666777776665432   557788887  5


Q ss_pred             CCCcCCCcc
Q 010017          510 PFTVNFLCL  518 (520)
Q Consensus       510 ~~~~~~g~l  518 (520)
                      .+...+||+
T Consensus       526 lP~t~~GKi  534 (545)
T PRK07768        526 IPKTPSGKL  534 (545)
T ss_pred             CCCCCchhH
Confidence            677778886

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-40  Score=341.31  Aligned_cols=298  Identities=20%  Similarity=0.239  Sum_probs=244.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++++++++|||||||.||||++||+++.+++..+...+....+|+.+..+|++|.+++.. .+.++..|+++++.  
T Consensus        97 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~  176 (414)
T PRK08308         97 NYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN  176 (414)
T ss_pred             CCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC
Confidence            346789999999999999999999999999988888777788888999999999999999865 45678899988773  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|+++++|+++..+.+....                                              
T Consensus       177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  210 (414)
T PRK08308        177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----------------------------------------------  210 (414)
T ss_pred             CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----------------------------------------------
Confidence             678899999999999999999999877442100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                      . ..++.+++||+++++.+.+.++..+.++++.||+||++++....  
T Consensus       211 --------------------------------~-~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~--  255 (414)
T PRK08308        211 --------------------------------T-FQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICP--  255 (414)
T ss_pred             --------------------------------c-ccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecC--
Confidence                                            0 01267788999999887544444467899999999998644322  


Q ss_pred             CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCC
Q 010017          316 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  395 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~  395 (520)
                      .....+++|+|+|++++++.+.       .|+.|||++++                   .++||+|||+|++++      
T Consensus       256 ~~~~~~~~G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~------  303 (414)
T PRK08308        256 DMKSHLDLGNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSE------  303 (414)
T ss_pred             CCCCCCccCccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECC------
Confidence            2234578999999999998752       35679999973                   258999999999998      


Q ss_pred             ccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCc
Q 010017          396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  471 (520)
Q Consensus       396 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  471 (520)
                          ||+++++||.||+||+ +|++|+|.|||+++.++|.|.+|+|++.+++    .+.++++.+.              
T Consensus       304 ----dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--------------  364 (414)
T PRK08308        304 ----RGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--------------  364 (414)
T ss_pred             ----CccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--------------
Confidence                8999999999999996 8999999999999999999999999998764    4556666542              


Q ss_pred             CCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          472 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ..+.++++++++++|+.|+     .+.++.++++.+...+||+
T Consensus       365 ----~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  402 (414)
T PRK08308        365 ----EIDPVQLREWCIQHLAPYQ-----VPHEIESVTEIPKNANGKV  402 (414)
T ss_pred             ----CCCHHHHHHHHHHhCcccc-----CCcEEEEeccCCCCCCcCe
Confidence                3467889999999999887     4477999999999999987

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=6.2e-41  Score=343.32  Aligned_cols=271  Identities=25%  Similarity=0.357  Sum_probs=233.5

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc---
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---  157 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~---  157 (520)
                      ..++++++++|||||||.||+|.+||+++..........+.+.++|++++.+|++|.+++...+.++..|+++++.+   
T Consensus       117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~  196 (408)
T TIGR01733       117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDE  196 (408)
T ss_pred             CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhh
Confidence            35799999999999999999999999999988888888888889999999999999999888888899998888742   


Q ss_pred             ---hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          158 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       158 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                         +..+.+.++++++|.+.++|.++..+.+...                                              
T Consensus       197 ~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~----------------------------------------------  230 (408)
T TIGR01733       197 ERDAALLAALIAEHPVTVLNLTPSLLALLAAALP----------------------------------------------  230 (408)
T ss_pred             ccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh----------------------------------------------
Confidence               4678888999999999999999988765321                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-Ceeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||+++++.+ +.+.+.++ +.+++.||+||++..+..
T Consensus       231 --------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  278 (408)
T TIGR01733       231 --------------------------------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA  278 (408)
T ss_pred             --------------------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEE
Confidence                                            01122388999999999987 66667776 899999999999876653


Q ss_pred             cCCCC---C--CccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC------C--cc
Q 010017          313 RRPTC---N--VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------G--WL  379 (520)
Q Consensus       313 ~~~~~---~--~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~------g--w~  379 (520)
                      .....   .  ...++|+|.++++++|+|++ ++++++|+.|||+++|++++.||+++|+.|.+.|..+      |  ||
T Consensus       279 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~  357 (408)
T TIGR01733       279 TLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY  357 (408)
T ss_pred             EEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEE
Confidence            22111   1  26789999999999999976 8899999999999999999999999999999887443      2  99


Q ss_pred             ccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEE
Q 010017          380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  441 (520)
Q Consensus       380 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~V  441 (520)
                      +|||+|++++          +|++++.||.||+|+. +|++|+|.+||+++..||.|.+|+|
T Consensus       358 ~TGDl~~~d~----------~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       358 RTGDLVRYLP----------DGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ECCceEEEcC----------CCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence            9999999998          8999999999999996 8999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-41  Score=374.24  Aligned_cols=319  Identities=14%  Similarity=0.124  Sum_probs=244.6

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEec---c
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT---A  157 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~~---~  157 (520)
                      .++|+++|+|| ||||+||++.++|.+...........+++.++|++++.+|++|.+++...+.+ +..|+++++.   +
T Consensus       604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~  682 (994)
T PRK07868        604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLD  682 (994)
T ss_pred             CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCC
Confidence            46899999999 58888888888887765544444556678899999999999999998775554 5566666553   6


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      +..+++.|+++++|+++.+|+++..+.......                                               
T Consensus       683 ~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~-----------------------------------------------  715 (994)
T PRK07868        683 PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV-----------------------------------------------  715 (994)
T ss_pred             HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc-----------------------------------------------
Confidence            889999999999999999999998775420000                                               


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-CeeeecccccccccceeccCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                  ...+..+|.++ || .+++.+ +++.+.++ +++++.||+||++.... .. 
T Consensus       716 ----------------------------~~~~~slr~~~-g~-gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~-  763 (994)
T PRK07868        716 ----------------------------LHGNHPVRLFI-GS-GMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV-  763 (994)
T ss_pred             ----------------------------cCCCCceEEEe-cC-CCCHHHHHHHHHHhCchheeeeeeccccccccc-cc-
Confidence                                        00111236655 33 477776 67777776 78999999999875433 22 


Q ss_pred             CCCCccccccCcCCe-EEEEE--e--------CCCC--CcCCCCCccEEEEecCCCCccccCCchhhh--cccC-CCCcc
Q 010017          316 TCNVLGSVGHPINHT-EIKIV--D--------AETN--EVLPAGSKGIVKVRGSQVMQGYFKNPSATK--QALD-EDGWL  379 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~-~v~iv--d--------~~~~--~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~--~~f~-~~gw~  379 (520)
                      .....+++|+|+|++ +++|.  |        .+.|  +.+++|+.|||+++++..    + ||+.+.  ..|. .+|||
T Consensus       764 ~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~  838 (994)
T PRK07868        764 SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWI  838 (994)
T ss_pred             CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEE
Confidence            224568999999997 67664  1        1334  567899999999998864    3 455443  2353 48999


Q ss_pred             ccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc---eeEEEEEcC
Q 010017          380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPD  456 (520)
Q Consensus       380 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~---~~~a~vv~~  456 (520)
                      +|||+|++|+          ||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++   .+.|+|+++
T Consensus       839 ~TGDlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~  907 (994)
T PRK07868        839 STEYLFRRDD----------DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLR  907 (994)
T ss_pred             eccceEEEcC----------CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeC
Confidence            9999999999          8999999999999996 7889999999999999999999999998754   577888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ++                ...+.+++++++++ ++.|+     .++.|.++++.+...|||+
T Consensus       908 ~~----------------~~~~~~~L~~~l~~-l~~y~-----vP~~i~~v~~lP~T~sGKi  947 (994)
T PRK07868        908 PG----------------AAITAADLTEALAS-LPVGL-----GPDIVHVVPEIPLSATYRP  947 (994)
T ss_pred             CC----------------CcCCHHHHHHHHHh-CCCCc-----CCeEEEEeCCCCCCccccE
Confidence            53                34577889999985 77777     4578999999999999886

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.7e-40  Score=341.11  Aligned_cols=251  Identities=35%  Similarity=0.592  Sum_probs=207.2

Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh--hhcCCCCCcEEEEEcChhhHHHH-HHhhhhhhcCeeEEecc-
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMYTA-  157 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~--~~~~~~~~d~~l~~lpl~h~~g~-~~~~~~~~~G~~~~~~~-  157 (520)
                      .++++++++|||||||.||+|.+||+++.+.+..+.  ...++.  |++++++|++|++++ ...+.++..|+++++.+ 
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  230 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP  230 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred             CccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccc
Confidence            469999999999999999999999999998877654  223333  699999999999999 56778899999999854 


Q ss_pred             -----hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          158 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       158 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                           ++.+++.++++++|++.++|+++..+.+..+.. ..                                       
T Consensus       231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~---------------------------------------  270 (417)
T PF00501_consen  231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK---------------------------------------  270 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---------------------------------------
T ss_pred             ccccccccchhccccccccccccccccccccccccccc-cc---------------------------------------
Confidence                 245789999999999999999999886521110 00                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCC-eeeecccccccccce
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVI  310 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~  310 (520)
                                                     .....+..+|.+++||+++++++ +++.+.++. ++++.||+||++.++
T Consensus       271 -------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  319 (417)
T PF00501_consen  271 -------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIA  319 (417)
T ss_dssp             -------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEE
T ss_pred             -------------------------------ccccccccccccccccccCChhhccccccccccccceecccccccceee
Confidence                                           00012333489999999999987 566677776 999999999999888


Q ss_pred             eccC--CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeec
Q 010017          311 AARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  388 (520)
Q Consensus       311 ~~~~--~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~  388 (520)
                      +...  ......+++|.|+|+++++|+|+++++++++|+.|||+++||+++.||+++|+.|+++|..+|||+|||+|++|
T Consensus       320 ~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d  399 (417)
T PF00501_consen  320 TIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD  399 (417)
T ss_dssp             EEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence            7553  22245678999999999999998889999999999999999999999999999999999766899999999999


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEe
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVL  415 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~  415 (520)
                      +          ||+++++||.||+||+
T Consensus       400 ~----------~G~~~~~GR~~~~i~~  416 (417)
T PF00501_consen  400 E----------DGYLYILGRSDDMIKV  416 (417)
T ss_dssp             T----------TSEEEEEEEGSCEEEE
T ss_pred             C----------CCeEEEEEeeCCEEEe
Confidence            8          8999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=3.7e-36  Score=293.65  Aligned_cols=313  Identities=25%  Similarity=0.323  Sum_probs=237.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhh-hhhcCeeEEe---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY---  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~-~~~~G~~~~~---  155 (520)
                      ..+-.+++..+|||||||.||..++||.-+......+...++++++|+++..+|+||+++...++. ++..|+|+++   
T Consensus       238 ~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkK  317 (649)
T KOG1179|consen  238 GLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKK  317 (649)
T ss_pred             CccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecc
Confidence            456789999999999999999999999999887777888899999999999999999999988655 6889999998   


Q ss_pred             cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      ++..++|++..+|++|+..-+--+.+-|++....    ..                                        
T Consensus       318 FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~----~~----------------------------------------  353 (649)
T KOG1179|consen  318 FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS----PE----------------------------------------  353 (649)
T ss_pred             cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC----hh----------------------------------------
Confidence            6899999999999999987554443333321000    00                                        


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCe-eeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVK-VQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~  314 (520)
                                              ...++        ..+..|.+.-+...++|.++||.+ |.+.||+||....... .
T Consensus       354 ------------------------er~Hk--------VRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N-~  400 (649)
T KOG1179|consen  354 ------------------------ERQHK--------VRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVN-Y  400 (649)
T ss_pred             ------------------------hcCce--------EEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeee-e
Confidence                                    00000        223455555566779999999875 9999999997654332 2


Q ss_pred             CCCCCccccccC------cCCeEEEEEeCCCCC----------cCCCCCccEEEEe--cCCC---CccccCCchhhhccc
Q 010017          315 PTCNVLGSVGHP------INHTEIKIVDAETNE----------VLPAGSKGIVKVR--GSQV---MQGYFKNPSATKQAL  373 (520)
Q Consensus       315 ~~~~~~~~~G~~------~~~~~v~ivd~~~~~----------~~~~g~~GEl~v~--gp~v---~~GY~~~~~~t~~~f  373 (520)
                        +...|.+|..      +--+++-=+|+++++          +|++||+|.++-+  ....   |.||.++.++|+++.
T Consensus       401 --d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl  478 (649)
T KOG1179|consen  401 --DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKL  478 (649)
T ss_pred             --cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhh
Confidence              2333444432      112333334666665          4689999977654  2333   999999888887754


Q ss_pred             -----C-CCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC-
Q 010017          374 -----D-EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-  446 (520)
Q Consensus       374 -----~-~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-  446 (520)
                           . .|-||.|||+-.+|+          .|++||.+|..|.+.. +||||+..|||.+|.....++||.|+|+.- 
T Consensus       479 ~rDVFkkGD~~f~tGDlLv~D~----------~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP  547 (649)
T KOG1179|consen  479 LRDVFKKGDVYFNTGDLLVADE----------LGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVP  547 (649)
T ss_pred             HHhhhccCcEEEeeCcEEEEec----------CCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecC
Confidence                 2 366999999999999          8999999999999998 899999999999999999999999999732 


Q ss_pred             ---ceeE-EEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCC
Q 010017          447 ---RRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS  498 (520)
Q Consensus       447 ---~~~~-a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  498 (520)
                         .+.| |.|+.++.                .+.+.+.+-+.++..|+.|+.|..
T Consensus       548 ~~EGRaGMAaI~~~p~----------------~~~d~~~l~~~l~~~LP~YA~P~F  587 (649)
T KOG1179|consen  548 GYEGRAGMAAIVLDPT----------------TEKDLEKLYQHLRENLPSYARPRF  587 (649)
T ss_pred             CccCccceEEEEecCc----------------ccchHHHHHHHHHhhCccccchHH
Confidence               2333 55564543                457888999999999999997743

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=3.1e-36  Score=302.39  Aligned_cols=284  Identities=19%  Similarity=0.152  Sum_probs=211.6

Q ss_pred             CCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCC--CcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---c
Q 010017           84 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN--GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---A  157 (520)
Q Consensus        84 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---~  157 (520)
                      ++.++++|||||||.||||++||+++.+.+..+...++...  .|++++.+|++|++++.+ .+.++..|++++..   +
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            66899999999999999999999999988877776666643  468999999999999865 45567889988774   4


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      +..+++.++..  ++++++|+++..+.+..                                                  
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~--------------------------------------------------  202 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD--------------------------------------------------  202 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC--------------------------------------------------
Confidence            55566665533  78999999998774420                                                  


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCC-eeeecccccccccceeccCCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                   ..+..++. ++||+++++++.+.+..++. .+++.||+||++++.....  
T Consensus       203 -----------------------------~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~--  250 (386)
T TIGR02372       203 -----------------------------YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA--  250 (386)
T ss_pred             -----------------------------cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccC--
Confidence                                         00111244 67899999987544444564 6999999999987544321  


Q ss_pred             CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCc
Q 010017          317 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  396 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~  396 (520)
                         .+..|.+.|++++++ +  ++..           .|+                   ..|++|||++++++       
T Consensus       251 ---~~~~~~~~p~~~~~~-~--~~~~-----------~g~-------------------~~~~~tgD~g~~d~-------  287 (386)
T TIGR02372       251 ---PDDPFRLLPDLACFA-D--TLSS-----------AGL-------------------ARRLDLQDRLAWDK-------  287 (386)
T ss_pred             ---CCCCcccCCCccccC-C--CccC-----------CCc-------------------cceeecCceEEEcC-------
Confidence               234567777766543 1  1110           011                   23689999999998       


Q ss_pred             cccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCceeEEEEEcChHHHHHHHHHcCCCcCCccc
Q 010017          397 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASE  476 (520)
Q Consensus       397 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  476 (520)
                         +|+++|.||+||+||+ +|++|+|.+||++|.+||.|.+|+|+.. .+.+.++|+++++.             . .+
T Consensus       288 ---~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~-g~~~~a~vv~~~~~-------------~-~~  348 (386)
T TIGR02372       288 ---DGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD-GRRLKAFIVVAEDA-------------D-EA  348 (386)
T ss_pred             ---CCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC-CceEEEEEEECCCC-------------C-hH
Confidence               8999999999999996 9999999999999999999999999754 45778888886431             0 01


Q ss_pred             cChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          477 LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       477 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      ...++++++++++++.|+     +++.|.++++.+...+||+
T Consensus       349 ~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~lP~t~~GKi  385 (386)
T TIGR02372       349 ELEIELRATAARHLPAPA-----RPDRFRFGTELPRTGAGKL  385 (386)
T ss_pred             HHHHHHHHHHHHhCCCCC-----CCcEEEEcccCCCCCCCCc
Confidence            123567777777777666     6688999999999999997

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=2.3e-35  Score=302.89  Aligned_cols=301  Identities=20%  Similarity=0.226  Sum_probs=210.7

Q ss_pred             hcccCCcchhhccccc--CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHH---hhhhcCCCCCcEEEEEcChhhH
Q 010017           63 RKAFSDSNDARKHYKY--ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS---LYDIVPAENGDKFLSMLPPWHV  137 (520)
Q Consensus        63 ~~~~~~~~~~~~~~~~--~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~---~~~~~~~~~~d~~l~~lpl~h~  137 (520)
                      ..|+.++.+..++++.  ...+++++++++|||||||.||+|.+||.++......   ....+++.++|++++..+..+.
T Consensus        52 ~lP~~~K~~l~~~~~~~~~~~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~  131 (422)
T TIGR02155        52 KFPFTQKHDLRDNYPFGLFAVPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLF  131 (422)
T ss_pred             HCCCCcHHHHhhcCCCcccCCChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCcccc
Confidence            3455555555444332  2346788999999999999999999999998665333   2344688899999887664432


Q ss_pred             H-HHHHhhhhhhcCeeEEec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Q 010017          138 Y-ERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  213 (520)
Q Consensus       138 ~-g~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (520)
                      . ++...+.....|++++..   ++..+++.|++++|++++++|+++..|+....+.....                   
T Consensus       132 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~-------------------  192 (422)
T TIGR02155       132 TGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP-------------------  192 (422)
T ss_pred             chhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc-------------------
Confidence            2 222334456778887753   46789999999999999999999988866432210000                   


Q ss_pred             HHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHH
Q 010017          214 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA  292 (520)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~  292 (520)
                                                                            ....+|.+++||+++++.+ +.+.+.
T Consensus       193 ------------------------------------------------------~~~~lr~i~~~ge~l~~~~~~~i~~~  218 (422)
T TIGR02155       193 ------------------------------------------------------AQTSLQVGIFGAEPWTNAMRKEIEAR  218 (422)
T ss_pred             ------------------------------------------------------ccCceEEEEEeCCcCCHHHHHHHHHH
Confidence                                                                  0012388999999999887 455567


Q ss_pred             hCCeeeeccccccccc-ceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhc
Q 010017          293 IGVKVQVGYGLTESSP-VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  371 (520)
Q Consensus       293 ~g~~v~~~YG~TE~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~  371 (520)
                      ||+++++.||+||+++ .+...... ...+ ...+.+++.++|+|+++++++++|+.|||++++.            +++
T Consensus       219 ~g~~v~~~YG~tE~~~~~~~~~~~~-~~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------------~~~  284 (422)
T TIGR02155       219 LGMKATDIYGLSEVIGPGVAMECVE-TQDG-LHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------------TKE  284 (422)
T ss_pred             hCCceEecccchhhcCCceeecccc-cCCC-ceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------------Ccc
Confidence            8999999999999852 22221111 1111 1222346788999988899999999999999953            445


Q ss_pred             ccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccc-eEEEEeCCC---c
Q 010017          372 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QIVVIGQDQ---R  447 (520)
Q Consensus       372 ~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~-~~~Vvg~~~---~  447 (520)
                      +| ..+||+|||+++++++  |++..  ...++|.||.||+|++ +|++|+|.+||++|.+||.|. ++.++....   +
T Consensus       285 ~~-p~~ry~TGDl~~~~~~--~Gr~~--~~~~~i~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~  358 (422)
T TIGR02155       285 AL-PVIRYRTRDLTRLLPG--TARTM--RRMDRITGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMD  358 (422)
T ss_pred             cc-ceeeEEcCcEEEEECC--CCCcc--cccccccCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCcc
Confidence            56 3689999999999772  22211  1356899999999997 899999999999999999998 555543322   3


Q ss_pred             eeEEEEEcC
Q 010017          448 RPGAIIVPD  456 (520)
Q Consensus       448 ~~~a~vv~~  456 (520)
                      .+...|++.
T Consensus       359 ~~~~~v~~~  367 (422)
T TIGR02155       359 ELTLKVELK  367 (422)
T ss_pred             EEEEEEEEe
Confidence            566666654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=100.00  E-value=1.1e-32  Score=283.34  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=197.5

Q ss_pred             hcccCCcchhhcccc-------cCCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCCCcEEEEEc
Q 010017           63 RKAFSDSNDARKHYK-------YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAENGDKFLSML  132 (520)
Q Consensus        63 ~~~~~~~~~~~~~~~-------~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~l  132 (520)
                      ..|+.++.+.+++++       ...++.++++.++|||||||.||+|.+||.++......+..   ..++.++|+++...
T Consensus        58 ~lP~~~k~~lr~~~p~~~~~~~~~~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~  137 (445)
T TIGR03335        58 ELPVISGEVIRKNQPPVTDDFMFKSADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICA  137 (445)
T ss_pred             HCCCCCHHHHHhcCCccccccccccCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence            345556665555442       23456789999999999999999999999998766544433   34888999999998


Q ss_pred             ChhhHHHHHH-hhhhhhcCeeEEec-chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 010017          133 PPWHVYERAC-GYFIFSRGIELMYT-AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  210 (520)
Q Consensus       133 pl~h~~g~~~-~~~~~~~G~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (520)
                      |..+..+... .+.++..|++++.. .....++.|++++++.++++|+.+..++..+.+.....                
T Consensus       138 ~~~~~~g~~~~~~~~~~~Ga~vi~~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~----------------  201 (445)
T TIGR03335       138 SYGMNVGANTMTLAAREVGMSIIPEGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP----------------  201 (445)
T ss_pred             cCCcchhHHHHHHHHHHcCCEEEcCCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc----------------
Confidence            8876655433 34456778877654 33567889999999999999998877765432211000                


Q ss_pred             HHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HH
Q 010017          211 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LF  289 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~  289 (520)
                                                                               ....+|.+++||+++++.+. .+
T Consensus       202 ---------------------------------------------------------~~~~lr~ii~gGE~l~~~~r~~i  224 (445)
T TIGR03335       202 ---------------------------------------------------------AESSIRRLVVGGESFADESRNYV  224 (445)
T ss_pred             ---------------------------------------------------------ccCcceEEEEcCCCCCHHHHHHH
Confidence                                                                     00123889999999998874 45


Q ss_pred             HHHhCCeeeecccccccccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhh
Q 010017          290 YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT  369 (520)
Q Consensus       290 ~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t  369 (520)
                      .+.||+++++.||+||++. +..+.    .....+.+.+.+.++|+|+++++++|+|+.|||++++-...        .+
T Consensus       225 e~~~g~~v~~~YG~TE~~~-~~~c~----~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~--------~~  291 (445)
T TIGR03335       225 EELWGCEVYNTYGSTEGTM-CGECQ----AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKP--------GE  291 (445)
T ss_pred             HHHhCCcEEecCChhhhhh-eEEec----CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCC--------Cc
Confidence            5678999999999999863 22111    11123444567889999998899999999999999943320        01


Q ss_pred             hcccCCCCccccCceeeec-cCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCc
Q 010017          370 KQALDEDGWLNTGDIGWIA-PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  434 (520)
Q Consensus       370 ~~~f~~~gw~~TGDlg~~~-~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p  434 (520)
                      .++++--+ |+|||++++. .++|.|++..  -.+...||.|||+++ +|.||+|.+||++|.+++
T Consensus       292 r~~~PliR-YrtgD~~~~~~~~~C~CGr~~--~r~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       292 RCGSLLIN-YDTEDTTVVISRDRCPCGRTH--MRILNPEREAETIWI-SGVPFNRVDVERAVFQRE  353 (445)
T ss_pred             cCCceEEE-eecCceEEEecCCCCCCCCCc--ceeCCCcccCceEEE-CCEEeCHHHHHHHHhccC
Confidence            11222122 9999999873 4566443321  223346999999998 999999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.97  E-value=8.7e-30  Score=249.08  Aligned_cols=316  Identities=21%  Similarity=0.263  Sum_probs=233.2

Q ss_pred             eeHHHHHHhchhhhcccCCcchhhcccccC--CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh---hcCCCC
Q 010017           50 FSYDEIIDLGRESRKAFSDSNDARKHYKYE--TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAEN  124 (520)
Q Consensus        50 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~  124 (520)
                      +..+++.+..+....|+..+.+.+++++..  .++.++...|.-||||||.|+-+.+|+..+......+.+   ..+...
T Consensus        54 v~p~~i~~l~Dl~klP~t~K~~lre~ypf~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~  133 (438)
T COG1541          54 VDPDDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRK  133 (438)
T ss_pred             CChHHhhCHHHHHhCCCCcHHHHHHhCCcccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCC
Confidence            445666667777788888998888888743  456788888999999999999999999987665554443   347788


Q ss_pred             CcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHH
Q 010017          125 GDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRV  200 (520)
Q Consensus       125 ~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  200 (520)
                      +|++..+.-. .+..|+...+.+-..|++++-.   +.+..++.++.++|+++.++|+.+..++..+.+......     
T Consensus       134 gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~-----  208 (438)
T COG1541         134 GDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD-----  208 (438)
T ss_pred             CCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh-----
Confidence            8987665441 1122222333444577777764   457788999999999999999999999887655431110     


Q ss_pred             HHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCC
Q 010017          201 VARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGG  280 (520)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~  280 (520)
                                                                                       ..   .+|.+++|+|
T Consensus       209 -----------------------------------------------------------------~~---~lk~~i~gaE  220 (438)
T COG1541         209 -----------------------------------------------------------------KL---SLKKGIFGAE  220 (438)
T ss_pred             -----------------------------------------------------------------hc---ceeEEEEecc
Confidence                                                                             00   1288999999


Q ss_pred             CCChhH-HHHHHHhCCeeeecccccccccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCC
Q 010017          281 SLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM  359 (520)
Q Consensus       281 ~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~  359 (520)
                      +.++++ +.+.+.||+.+++.||+||..+....   +|......+...++..++|+||++++.+++|+.|||+++     
T Consensus       221 ~~see~R~~ie~~~g~~~~diYGltE~~g~g~~---eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T-----  292 (438)
T COG1541         221 PWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAG---ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVIT-----  292 (438)
T ss_pred             cCCHHHHHHHHHHhCCceeeccccccccCCccc---ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEE-----
Confidence            999998 55666799999999999998655311   222222344566789999999999999999999999998     


Q ss_pred             ccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccc--
Q 010017          360 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR--  437 (520)
Q Consensus       360 ~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~--  437 (520)
                             .+++++++--+ |+|||+.++.+.+|.|++... -...|.||.||++++ .|.+|+|..||.+|.+.+.+.  
T Consensus       293 -------~L~~~~~PlIR-YrtgDit~i~~~~C~cGr~~~-ri~~I~GR~dD~l~~-~G~~vfp~~ie~~l~~~~~~~~~  362 (438)
T COG1541         293 -------TLTKEGMPLIR-YRTGDITVILSDPCGCGRTHR-RIERIEGRSDDMLIV-RGVNVFPSQIERVLLQIPEVTPH  362 (438)
T ss_pred             -------eccccCcceEE-EEcCCeeEecccCCCCCCccc-cccccCcccccEEEE-CCEEeCHHHHHHHHhcccCCCce
Confidence                   45555553333 999999999988885554333 456799999999998 799999999999999999999  


Q ss_pred             -eEEEEeC-CCceeEEEEEcC
Q 010017          438 -QIVVIGQ-DQRRPGAIIVPD  456 (520)
Q Consensus       438 -~~~Vvg~-~~~~~~a~vv~~  456 (520)
                       ++.+... ..+.+..-|...
T Consensus       363 yqi~~~~~~~~d~L~V~vE~~  383 (438)
T COG1541         363 YQIILTRNGGLDELTVRVELE  383 (438)
T ss_pred             EEEEEecCCCCceEEEEEEec
Confidence             4444442 245566555554

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=3.4e-29  Score=271.48  Aligned_cols=269  Identities=22%  Similarity=0.302  Sum_probs=220.8

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----  156 (520)
                      ..+++++|++|||||||.||||+.+|+++.+........+....+|+++...++.+.......+.++..|++++..    
T Consensus       363 ~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~  442 (642)
T COG1020         363 LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALL  442 (642)
T ss_pred             CCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccc
Confidence            3568999999999999999999999999998777777778899999999999987777777778889999988874    


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+.+.+.++++|.+..+|..+..+........                                           
T Consensus       443 ~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-------------------------------------------  479 (642)
T COG1020         443 QVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD-------------------------------------------  479 (642)
T ss_pred             cCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc-------------------------------------------
Confidence              46788889999999999999988877754300000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh--CCeeeeccccccccccee
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~--g~~v~~~YG~TE~~~~~~  311 (520)
                                                    .......+|.+++||+.++..+ .++....  ...+++.||+||++....
T Consensus       480 ------------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~  529 (642)
T COG1020         480 ------------------------------LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAP  529 (642)
T ss_pred             ------------------------------ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhhee
Confidence                                          0000111378899999998887 4555544  468999999999665444


Q ss_pred             ccCCCCCC--ccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          312 ARRPTCNV--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       312 ~~~~~~~~--~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      ........  ...+|+|++|..++|+| +.++++|.|..||+++.|.++.+||+++|+.|++.|..+++|+|||++++.+
T Consensus       530 ~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~  608 (642)
T COG1020         530 SFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLA  608 (642)
T ss_pred             eEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECC
Confidence            33221111  45899999999999999 6789999999999999999999999999999999996556899999999888


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCc
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  434 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p  434 (520)
                                ||.+.++||.|+++|+ +|++|.+.|||..+.++|
T Consensus       609 ----------dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         609 ----------DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ----------CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence                      8999999999999997 899999999999998875

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.83  E-value=1.4e-18  Score=175.00  Aligned_cols=261  Identities=17%  Similarity=0.145  Sum_probs=169.0

Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHH-hhhh--cCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe----cc
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDI--VPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY----TA  157 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~--~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~----~~  157 (520)
                      -..+..||||||.|-.+..+.......... +...  .+...++++..++.- .+.+.....     ....+-+    .+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~~-----~~~~~~~~~l~~~  175 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVNN-----RWISLDFFDLLAP  175 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHHh-----ccceeeecCCCcC
Confidence            445667999999999999998865433222 2222  245566665554211 122211100     1110111    35


Q ss_pred             hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHH
Q 010017          158 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  237 (520)
Q Consensus       158 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (520)
                      .+..++.|++++|+++.+.|+.+..|+..+.+....                                            
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--------------------------------------------  211 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--------------------------------------------  211 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--------------------------------------------
Confidence            678899999999999999999999988754432100                                            


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHH-HHHHHhCCeeeecccccccccceeccCCC
Q 010017          238 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT  316 (520)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  316 (520)
                                                     + ..+.++++||.+++..+ .+.+.||++|++.||+|| +.+++.+.  
T Consensus       212 -------------------------------~-~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~--  256 (430)
T TIGR02304       212 -------------------------------I-KPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCR--  256 (430)
T ss_pred             -------------------------------C-CceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecC--
Confidence                                           0 12788999999998875 456679999999999999 54433221  


Q ss_pred             CCCccccccCcCCeEEE--EEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          317 CNVLGSVGHPINHTEIK--IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~--ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                         .+..+.-...+.++  ++|++ ++       ++.++|            ..++.+++--+ |+|||++.+.+.+|.|
T Consensus       257 ---~g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT------------~L~n~~~PlIR-YrtGD~~~~~~~~C~C  312 (430)
T TIGR02304       257 ---CGTLHLNEDLVHIEKQYLDEH-KR-------FVPIIT------------DFTRTTQPIVR-YRLNDILVESEQPCSC  312 (430)
T ss_pred             ---CCCEEEccccEEEEeeEECCC-Cc-------eEEEEe------------cCCCccceEEe-eeCCCEEEeCCCCCCC
Confidence               13344444455566  78854 32       344776            33333443223 9999999988888855


Q ss_pred             CccccCcEE-EEEccccceEEe--CCceee--ccHHHHHHHh-cCcccceEEEEeCCCceeEEEEEcC
Q 010017          395 RSRRCGGVL-VLEGRAKDTIVL--STGENV--EPLELEEAAL-RSSLIRQIVVIGQDQRRPGAIIVPD  456 (520)
Q Consensus       395 ~~~~~~G~l-~i~GR~~d~i~~--~~G~~v--~p~eIE~~l~-~~p~V~~~~Vvg~~~~~~~a~vv~~  456 (520)
                      ++..  -.+ .|.||.+|++++  .+|..+  +|..++.++. ..+.|.+..++......+...+++.
T Consensus       313 Gr~~--~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~  378 (430)
T TIGR02304       313 GSAT--MAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCE  378 (430)
T ss_pred             CCcc--cccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeC
Confidence            5432  223 489999999983  456554  9999998855 5789999999987777777666664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=1.2e-18  Score=187.36  Aligned_cols=342  Identities=18%  Similarity=0.171  Sum_probs=220.0

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcCh--hhHHHHHHhhhhhhcCeeEEec--
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--WHVYERACGYFIFSRGIELMYT--  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl--~h~~g~~~~~~~~~~G~~~~~~--  156 (520)
                      ..++..+++.||||+||.||+|.-+|..+.....++...+....++++ .+.+.  +|..-.......+..|..+..+  
T Consensus       193 ~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~  271 (1032)
T KOG1178|consen  193 GGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTA  271 (1032)
T ss_pred             ecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccc
Confidence            356778999999999999999999999998888777777777777765 33221  2332223333445666656553  


Q ss_pred             ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                          .+..+.+.+++++++....+|++.+.++.......   ..+                                   
T Consensus       272 ~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~---~~l-----------------------------------  313 (1032)
T KOG1178|consen  272 TIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSL---PLL-----------------------------------  313 (1032)
T ss_pred             cCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcch---hhh-----------------------------------
Confidence                26788999999999999999999887765321100   000                                   


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCC-eeeecccccccccce
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGV-KVQVGYGLTESSPVI  310 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~-~v~~~YG~TE~~~~~  310 (520)
                                              .......++......++....+|++.+..+.. +...+-. -...-|+.++..+..
T Consensus       314 ------------------------~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~  369 (1032)
T KOG1178|consen  314 ------------------------EHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLV  369 (1032)
T ss_pred             ------------------------hhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccce
Confidence                                    00000011112222348889999999888733 4443311 122338888876655


Q ss_pred             eccCCCC-------CCccccccCcC----CeEEEEEeCCCCCcCCCCCccEEE----EecCCCCccccCCchhhhccc--
Q 010017          311 AARRPTC-------NVLGSVGHPIN----HTEIKIVDAETNEVLPAGSKGIVK----VRGSQVMQGYFKNPSATKQAL--  373 (520)
Q Consensus       311 ~~~~~~~-------~~~~~~G~~~~----~~~v~ivd~~~~~~~~~g~~GEl~----v~gp~v~~GY~~~~~~t~~~f--  373 (520)
                      .......       .....+.+-..    ...+++.. ..+.+.+.++.+...    ..+..+..| ++.|+.....+  
T Consensus       370 s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~  447 (1032)
T KOG1178|consen  370 SYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLT  447 (1032)
T ss_pred             eHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccc
Confidence            4322111       00111111100    12222222 223333333332222    223444555 34444433332  


Q ss_pred             ---CCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce--
Q 010017          374 ---DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR--  448 (520)
Q Consensus       374 ---~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~--  448 (520)
                         ..++.|+|||+|+...          +|.+.+.||.|++||. +|.++...||+.++..||.|.++.+....+..  
T Consensus       448 ~d~~~~r~y~tgD~gr~l~----------ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~  516 (1032)
T KOG1178|consen  448 VDGVKARIYRTGDNGRSLK----------NGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVG  516 (1032)
T ss_pred             cccchhhcccccccceeec----------CCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccC
Confidence               1246899999998887          7999999999999997 99999999999999999999999999987665  


Q ss_pred             --eEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          449 --PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       449 --~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                        +.+||++..+.               +......++.++..+|+.|+.|     ..+..+++.+..-|||+
T Consensus       517 ~~l~aFvv~~~~~---------------~~~~~~~i~~~l~~~La~y~vP-----s~~V~l~~vPl~~~GKv  568 (1032)
T KOG1178|consen  517 QTLLAFVVERGGS---------------KSVLIRDIRNYLKKELASYMLP-----SLVVPLAKVPLNPNGKV  568 (1032)
T ss_pred             ceEEEEEeccCCC---------------CchhHHHHHHhhcccccceecc-----eEEEEhhhCCcCCCCCc
Confidence              88999987541               2234678999999999999966     46888888888888876

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.64  E-value=6.4e-16  Score=152.32  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             CCCccccCceeee-ccCCCCCCccccCcEEEEEccccceEEeCCc---eeeccHHHHHHHhcCcccceEEEEeCCCc---
Q 010017          375 EDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTG---ENVEPLELEEAALRSSLIRQIVVIGQDQR---  447 (520)
Q Consensus       375 ~~gw~~TGDlg~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G---~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~---  447 (520)
                      .+|||+|||+|++ |+          ||+++|.||.|      +|   +||+|. ||++|.+||+|.+|+|+|.+++   
T Consensus       207 ~dgW~~TGDlg~~~d~----------dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g  269 (365)
T PRK09188        207 SRIWLATGKKVYNFIT----------RGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKG  269 (365)
T ss_pred             cCcEEeCCCEEEEEcC----------CCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence            5899999999998 57          89999999986      67   899999 9999999999999999998765   


Q ss_pred             -eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          448 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       448 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                       .+.|+|++..                  ..+.++++++++++|+. +     .+++|.++++.+...+||+
T Consensus       270 e~v~A~Vv~~~------------------~~~~~el~~~l~~~L~~-k-----vP~~v~~v~~lP~t~~GKi  317 (365)
T PRK09188        270 VGLYAFVEAEL------------------PADEKSLRARLAGAKPP-K-----PPEHIQPVAALPRDADGTV  317 (365)
T ss_pred             eEEEEEEEECC------------------CCCHHHHHHHHHhhchh-c-----CCcEEEEECCCCCCCCCCc
Confidence             4668888652                  24678999999999998 7     4578999999999999987

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.54  E-value=5.8e-13  Score=139.99  Aligned_cols=313  Identities=17%  Similarity=0.177  Sum_probs=199.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++.+|++-+.--++|.--|+.+||.++++.+........+.+..-++...+.+-..|+.. .+...+.|.+.++.  
T Consensus       939 ~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p 1018 (1363)
T KOG3628|consen  939 LNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISP 1018 (1363)
T ss_pred             ccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCH
Confidence            345689999999989999999999999999999999998888888888888888887777765 56678899987764  


Q ss_pred             -----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          157 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       157 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                           ++..++..|+++++.-.+.+-..+..+..+............                  ....+.++.....+|
T Consensus      1019 ~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~g------------------nn~s~s~vv~~~~RP 1080 (1363)
T KOG3628|consen 1019 MDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRG------------------NNTSSSIVVPAEERP 1080 (1363)
T ss_pred             HHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhh------------------cccccceeeecCCcc
Confidence                 467788999999988777765555554443221111100000                  000001111111122


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc-e----------------eEEecCCCCChhHH-HHHHHh
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-K----------------AGVSGGGSLPMHID-LFYEAI  293 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r----------------~~~~gg~~l~~~~~-~~~~~~  293 (520)
                      .                       .+-.-.|.+..+.+|+. +                .-.+|-+|.+.-++ +..+.-
T Consensus      1081 r-----------------------~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~g 1137 (1363)
T KOG3628|consen 1081 R-----------------------IALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREG 1137 (1363)
T ss_pred             H-----------------------HHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhcc
Confidence            1                       11111222333333221 0                00112122221111 111110


Q ss_pred             CCeeeecccccccccceeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCch-hhhcc
Q 010017          294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS-ATKQA  372 (520)
Q Consensus       294 g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~-~t~~~  372 (520)
                      -+++.+      .      ..+........|...+++++.|++||+..+|.+|+.||||+.|.+-+.+|++--+ .....
T Consensus      1138 rV~~ve------~------~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~ 1205 (1363)
T KOG3628|consen 1138 RVRLVE------V------GAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNH 1205 (1363)
T ss_pred             ceeeee------c------CCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhh
Confidence            111111      0      0111122234588889999999999999999999999999999999888876321 11122


Q ss_pred             c---------CCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhc-CcccceEEEE
Q 010017          373 L---------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVI  442 (520)
Q Consensus       373 f---------~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~-~p~V~~~~Vv  442 (520)
                      |         ...+|-||||+|++....+.-...-....+|++|-.++.+.+ +|-+.+|.+||+.+.. ||.|.+|+|+
T Consensus      1206 fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF 1284 (1363)
T KOG3628|consen 1206 FNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVF 1284 (1363)
T ss_pred             hhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeE
Confidence            2         234699999999987644422222223679999999999998 9999999999998875 9999999999


Q ss_pred             eCCC
Q 010017          443 GQDQ  446 (520)
Q Consensus       443 g~~~  446 (520)
                      .-..
T Consensus      1285 ~~~g 1288 (1363)
T KOG3628|consen 1285 QATG 1288 (1363)
T ss_pred             eeCC
Confidence            7543

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.18  E-value=1.9e-09  Score=106.61  Aligned_cols=124  Identities=26%  Similarity=0.364  Sum_probs=78.9

Q ss_pred             eeEEecC------CCCCh-hH-HHHHHHhCC----eeeecccccccccceeccCCCCCCccccccCcCCeEEEEEeCCCC
Q 010017          273 KAGVSGG------GSLPM-HI-DLFYEAIGV----KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN  340 (520)
Q Consensus       273 r~~~~gg------~~l~~-~~-~~~~~~~g~----~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~  340 (520)
                      +++..||      +.++. +. +.+.+.+|+    .+++.|||||.....+.+..     +.  ...|.. +.|.|+++.
T Consensus       224 ~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~--~~~p~w-V~iRDp~tl  295 (365)
T PF04443_consen  224 IVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GH--FHVPPW-VIIRDPETL  295 (365)
T ss_pred             EEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC-----Cc--ccCCCe-EEEECCCCC
Confidence            4555554      34543 33 445566887    69999999997654432211     11  123333 777899999


Q ss_pred             CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCcee
Q 010017          341 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  420 (520)
Q Consensus       341 ~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  420 (520)
                      ++++.|++|-|-+-.+... .|             -+..-|.|+|.+..+++|++  +...++.++||.+.-= + +|..
T Consensus       296 ~~~~~Ge~Gli~vidl~~~-s~-------------p~~IlTeDlGvl~~~~~c~c--r~g~~f~vlGR~~~ae-~-RGCs  357 (365)
T PF04443_consen  296 EPLPPGETGLIQVIDLANT-SY-------------PGFILTEDLGVLHGDDDCGC--RKGKYFEVLGRADGAE-I-RGCS  357 (365)
T ss_pred             cCCCCCCeeEEEEEccccc-CC-------------CcEEEEcceeeecCCCCCCC--ccCCEEEEEeCCCCCc-c-CCcH
Confidence            9999999999988654331 11             23366999998877544443  3345899999987543 2 5665


Q ss_pred             ec
Q 010017          421 VE  422 (520)
Q Consensus       421 v~  422 (520)
                      ..
T Consensus       358 ~~  359 (365)
T PF04443_consen  358 LT  359 (365)
T ss_pred             HH
Confidence            54

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.82  E-value=3.8e-08  Score=91.73  Aligned_cols=77  Identities=13%  Similarity=-0.004  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEe---c
Q 010017           81 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY---T  156 (520)
Q Consensus        81 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~---~  156 (520)
                      ..++|++.|+|||||         +|.++..+.    ...+++++|+++ .+|++|++|+.. .+.++..|+++++   +
T Consensus       147 ~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rF  212 (227)
T TIGR03089       147 PDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHP  212 (227)
T ss_pred             CCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCC
Confidence            467999999999986         566655543    556788999999 999999999976 5667999999887   5


Q ss_pred             chhhHHHHHhhhCCc
Q 010017          157 AVRNLKDDLQRYQPH  171 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t  171 (520)
                      ++..+++.|+++|+|
T Consensus       213 d~~~~l~~i~~~~vT  227 (227)
T TIGR03089       213 DPARLDQIAETERVT  227 (227)
T ss_pred             CHHHHHHHHHhhcCC
Confidence            789999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.74  E-value=1.9e-07  Score=99.39  Aligned_cols=123  Identities=11%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             ccccCcCC-eEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC------------CCccccCceeeec
Q 010017          322 SVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------------DGWLNTGDIGWIA  388 (520)
Q Consensus       322 ~~G~~~~~-~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~------------~gw~~TGDlg~~~  388 (520)
                      .+|...|+ +.+.++++++.+.|.++++|||||.+++..++||.-+..|...|..            ..+.|||=+|++.
T Consensus       503 d~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~  582 (1363)
T KOG3628|consen  503 DVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH  582 (1363)
T ss_pred             ccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee
Confidence            35555554 7778889999999999999999999999999999888777766621            2479999999998


Q ss_pred             cCCCCCCccccCcEEEEEccccceEEeCCceeeccHH----------HHHHHhcCcccceEEEEeCCCceeEEEEEcCh
Q 010017          389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE----------LEEAALRSSLIRQIVVIGQDQRRPGAIIVPDK  457 (520)
Q Consensus       389 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~e----------IE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~  457 (520)
                      +           |.++|+|-++|++.--.|...+..+          |+.+++..+.|.++.++-  ++++..+++-++
T Consensus       583 ~-----------gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~E~~~Vv~~esP  648 (1363)
T KOG3628|consen  583 N-----------GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--DEHIVVVVLESP  648 (1363)
T ss_pred             C-----------CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--cceEEEEEEeCc
Confidence            6           7777777666666433566655433          567778889999999997  666666555444

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.58  E-value=3.5e-07  Score=95.82  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=86.8

Q ss_pred             e-eEEecCCCCChhHHHHHHHhC-Ce-eeecccccccccceeccCCCCCCccccccCcCC-eEEEEEeCCC--------C
Q 010017          273 K-AGVSGGGSLPMHIDLFYEAIG-VK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINH-TEIKIVDAET--------N  340 (520)
Q Consensus       273 r-~~~~gg~~l~~~~~~~~~~~g-~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~-~~v~ivd~~~--------~  340 (520)
                      + +...+|..+..-..++.+.+| ++ +-.+|++||+-..+-.. ++.    ..+...++ .-++-++.+.        .
T Consensus       270 ~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~----~~~~l~~~~~ffEFip~~~~~~~~~~~~  344 (528)
T PF03321_consen  270 KLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED----PGYVLAPDSGFFEFIPVDEDEQNPSEQP  344 (528)
T ss_dssp             -EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC------EEE-TTSSEEEEEE-STT-------S
T ss_pred             cEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC----CceEeecCCeEEEEEeccCCcccccCCC
Confidence            5 445566666666677777765 33 44789999963222211 111    11222222 1344444332        2


Q ss_pred             C-----cCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCc--EEEEEccccceE
Q 010017          341 E-----VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG--VLVLEGRAKDTI  413 (520)
Q Consensus       341 ~-----~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G--~l~i~GR~~d~i  413 (520)
                      +     .+..|+.-||+++..+   |.|              -|+.||+.++..-        .++  .+.|+||.+.++
T Consensus       345 ~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf--------~~~~P~i~F~~R~~~~l  399 (528)
T PF03321_consen  345 KTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGF--------YNQTPRIEFVGRRGQVL  399 (528)
T ss_dssp             SSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEE--------ETTEEEEEEEEETTEEE
T ss_pred             ceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeec--------cCCCcEEEEeccCCcee
Confidence            2     3567888899998332   222              1999999987641        134  799999999999


Q ss_pred             EeCCceeeccHHHHHHHhcC-----cccceEEEEeC----CCceeEEEEEcCh
Q 010017          414 VLSTGENVEPLELEEAALRS-----SLIRQIVVIGQ----DQRRPGAIIVPDK  457 (520)
Q Consensus       414 ~~~~G~~v~p~eIE~~l~~~-----p~V~~~~Vvg~----~~~~~~a~vv~~~  457 (520)
                      .+ .||+++-.+|++++.+.     -.+.+..+...    ..++...++.+..
T Consensus       400 ~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~  451 (528)
T PF03321_consen  400 SL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEG  451 (528)
T ss_dssp             -S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS
T ss_pred             ec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCC
Confidence            97 89999999999999864     34567777765    3456666666553

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.40  E-value=4.5e-07  Score=68.08  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             HHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCc
Q 010017          425 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  500 (520)
Q Consensus       425 eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  500 (520)
                      |||+++.+||+|.+|+|+|.+++    .+.|++++  .                    .++++++++++|+.|+.|.   
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~--------------------~~~i~~~~~~~l~~~~~P~---   55 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D--------------------EEEIRDHLRDKLPPYMVPR---   55 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H--------------------HHHHHHHHHHHS-GGGS-S---
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e--------------------ecccccchhhhCCCcceee---
Confidence            79999999999999999998654    67788887  1                    2689999999999999762   


Q ss_pred             cccEEEecC-CCCcCCCc
Q 010017          501 IGPIHVVDE-PFTVNFLC  517 (520)
Q Consensus       501 i~~~~~~~~-~~~~~~g~  517 (520)
                      -..|..+++ .+...|||
T Consensus        56 ~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   56 RIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             EEEEEEESSSEEBETTSS
T ss_pred             EEEEccccCcCCCCCCCC
Confidence            145555566 88888886

...

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=98.13  E-value=0.00054  Score=71.77  Aligned_cols=66  Identities=14%  Similarity=0.142  Sum_probs=47.4

Q ss_pred             CCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeec
Q 010017          343 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  422 (520)
Q Consensus       343 ~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  422 (520)
                      +..|+.=||+|+.-   .|.|              -||.||+.+...-.      +.--.+.|++|.+.+..+ .|+|.+
T Consensus       398 vk~G~~YelVvTt~---~GLY--------------RYrlGDvv~V~GF~------n~~P~~~Fv~R~~~vlsi-~gEK~t  453 (606)
T PLN02247        398 VKVGHYYELVVTTF---TGLY--------------RYRVGDILMVTGFY------NNAPQFRFVQRRNVVLSI-DTDKTN  453 (606)
T ss_pred             ccCCCeEEEEEEec---CceE--------------EEecCCEEEEeeec------CCCceEEEEecCCceeec-ccccCC
Confidence            45677788988721   1111              29999998765311      113568999999888886 899999


Q ss_pred             cHHHHHHHhc
Q 010017          423 PLELEEAALR  432 (520)
Q Consensus       423 p~eIE~~l~~  432 (520)
                      -.++-.++.+
T Consensus       454 E~~l~~Av~~  463 (606)
T PLN02247        454 EEDLLKAVTQ  463 (606)
T ss_pred             HHHHHHHHHH
Confidence            9999888875

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.10  E-value=0.0003  Score=74.23  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             ceeEEecCCCCChhHHHHHHHh-CC-eeeecccccccccceeccCCCCCCccccccC--cCCeEEEEEeCC-CC------
Q 010017          272 SKAGVSGGGSLPMHIDLFYEAI-GV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHP--INHTEIKIVDAE-TN------  340 (520)
Q Consensus       272 ~r~~~~gg~~l~~~~~~~~~~~-g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~--~~~~~v~ivd~~-~~------  340 (520)
                      +.++..||..  +-...+...+ +. .+...|++||+-..+-..+ .+ .+...+..  ..+..++-++.+ .+      
T Consensus       307 i~~~~~G~~~--~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~-~~-~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~  382 (597)
T PLN02249        307 LDVIVTGAMA--QYIPMLEYYSGGLPMASTIYASSESYFGINLNP-MC-KPSEVSYTIMPNMAYFEFLPHNHDGDGALDE  382 (597)
T ss_pred             EEEEecCChH--HHHHHHHHHcCCCccccccccccceEEEeecCC-CC-CCCCcceEecCCcEEEEeeecccCCcccCCC
Confidence            4555666654  3334444434 33 3567899999642221111 11 11111111  124445555311 01      


Q ss_pred             ------CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEE
Q 010017          341 ------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV  414 (520)
Q Consensus       341 ------~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~  414 (520)
                            ..|..|+.=||+|+..   .|.|              -|+.||+.++..-..      .-=.+.|+||.+.++.
T Consensus       383 ~~~v~l~eVe~G~~Y~lVvTT~---~GLy--------------RY~iGDvVrvtgf~~------~~P~i~F~gR~~~~ls  439 (597)
T PLN02249        383 TSLVELADVEVGKEYELVITTY---AGLY--------------RYRVGDILRVTGFHN------SAPQFKFIRRKNVLLS  439 (597)
T ss_pred             CcEecHHHcCCCCeEEEEEEcc---ccee--------------EeecCCEEEEeeccC------CCcEEEEEccCCccee
Confidence                  1245677788888721   1111              199999998865210      0246889999999999


Q ss_pred             eCCceeeccHHHHHHHhc
Q 010017          415 LSTGENVEPLELEEAALR  432 (520)
Q Consensus       415 ~~~G~~v~p~eIE~~l~~  432 (520)
                      + .||++.-.+++.+|.+
T Consensus       440 ~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        440 I-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             c-ccccCCHHHHHHHHHH
Confidence            6 9999999999998876

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.89  E-value=0.002  Score=67.52  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             CCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeec
Q 010017          343 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  422 (520)
Q Consensus       343 ~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  422 (520)
                      +..|+.=||+|+.-   .|.|              -||.||+.+...-.      +..-.+.|++|.+-+..+ .|+|.+
T Consensus       404 v~~G~~YelvvTt~---~GLy--------------RYrlGDvv~V~Gf~------n~~P~~~Fv~R~~~~lsi-~gEK~t  459 (612)
T PLN02620        404 VKLGQEYELVVTTY---AGLY--------------RYRVGDVLRVAGFK------NKAPQFSFICRKNVVLSI-DSDKTD  459 (612)
T ss_pred             ccCCCeEEEEEEec---CceE--------------EEecCCEEEEeeec------CCCceEEEEeecCceeec-ccccCC
Confidence            56777889998721   1111              19999998765311      013468999998888886 999999


Q ss_pred             cHHHHHHHhc
Q 010017          423 PLELEEAALR  432 (520)
Q Consensus       423 p~eIE~~l~~  432 (520)
                      -.++-.++.+
T Consensus       460 E~~l~~Av~~  469 (612)
T PLN02620        460 EVELQNAVKN  469 (612)
T ss_pred             HHHHHHHHHH
Confidence            9999888765

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=91.74  E-value=0.43  Score=37.61  Aligned_cols=64  Identities=13%  Similarity=0.050  Sum_probs=40.0

Q ss_pred             ceeeccHHHHHHHhcCcccc-eEEEEeC---CCceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHH
Q 010017          418 GENVEPLELEEAALRSSLIR-QIVVIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  493 (520)
Q Consensus       418 G~~v~p~eIE~~l~~~p~V~-~~~Vvg~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  493 (520)
                      |.||+|.+||++|.++|.+. +..++-.   ..+.+...|...++.             ..+....+++.+.+.+.|...
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~-------------~~~~~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF-------------SDDAEDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC-------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc-------------CcchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 5544432   234455555555320             000013466777777777765


Q ss_pred             h
Q 010017          494 T  494 (520)
Q Consensus       494 ~  494 (520)
                      .
T Consensus        68 l   68 (96)
T PF14535_consen   68 L   68 (96)
T ss_dssp             H
T ss_pred             c
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	520
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-14
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		7e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-09
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		6e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		5e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		7e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		8e-05
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-04
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		5e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 296 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 350
           K+  GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD +T + L     G 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 351 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
           + +RG Q+M+GY  NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 300 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 354
           GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD ET   LP    G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 355 GSQVMQGYFKNPSATKQALDEDGWLNTG 382
           G Q+M+GY  +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 297 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 297 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 355
           ++ GYGLTE+ S +I   R   +  G+ G  +     KIVD +T + L    +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 356 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
             +M+GY  NP AT   +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 324
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+            +      +    G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 325 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 383
            PI    +++ D E   V   G   G V+++G  +  GY+ N  AT+ AL  DG+  TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 384 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 442
           I  W                + ++ R KD ++ S GE +              +++  V+
Sbjct: 419 IAVW-----------DEEGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 443 G----QDQRRPGAIIVPDKEE 459
                + Q RP A++VP  E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
           GS P+  D   E     G  V   YG TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 396
            ET + LP G  G ++V+G  V +GY++ P  TK    +DG+  TGD+G I         
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 397 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 452
                V +L GR KD +V++ G NV P            + +  VIG      G    A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKEK 481
           +V DK   +  A+   ++H    +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 333
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 393
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I      
Sbjct: 350 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 394 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 450
                    L ++ R KD I+ S GENV P            + ++ VIG    + G   
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 451 -AIIVPDKEEV 460
            AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 254 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 311
           H +AE L    ++  A+  ++  VSG  +LP+H  +    A G +V   YG+TE+    +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 369
            R       G+VG P+   E+++V+ +   +  L   S G ++VRG  +   Y   P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 370 KQALDEDGWLNTGDI 384
             A  EDG+  TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 280 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 336
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 337 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 381
           S G P+    + +VDAE +  LP G  G + +RG  V +GY+ N +AT+ A   +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 382 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 440
           GD+G                 L   GRA +  ++ T GENV P        +   I   V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 441 VIG 443
           VIG
Sbjct: 430 VIG 432

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV  GYG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 249 ILWPLHLLAEKLVYK-KIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS 307
           I+W    L +   YK +IQS   +   G S   SL   +    E +  K+Q  +G+ E  
Sbjct: 293 IMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVP---EVLNCKLQQVFGMAEGL 345
Query: 308 PVIAARRPTCN--VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK 364
            V   R    +  +  + G PI+   EIKIVD +  EV P G  G++  RG     GY++
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQ 403
Query: 365 NPSATKQALDEDGWLNTGDIGWIAP 389
           +P    Q  DED +  +GD+    P
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTP 428

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 294 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 351
           G KV   YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 352 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 410
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 411 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 463
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 333
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 80  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
           +I S+DIA   YTSG+T +PKGV ++H NLL  +  ++      +     S LPP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 301 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 359
           +G TE+ P +    P   +   + G P +  E+K++  E    L  G  G + +RG  + 
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 360 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 415
           +GY+K     ++    DE G  +  TGD+G+I               L  + R K+ I  
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 416 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 475
             G  + P        +   +  + VIG+     G   VP    VL    R  +   D  
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 476 ELSKEK 481
           E  +E+
Sbjct: 502 EWVRER 507

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 293 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 348
           IG ++Q  +G+ E   ++   R       ++ + G+P+    E+ + DAE N  LP G  
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 408
           G +  RG    +GY+K+P     A D +G+  +GD+  I P             + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 409 AKDTI 413
            KD I
Sbjct: 433 EKDQI 437

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 274 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 333
           A V+G    P   + F E  G+K+  G+G TE+   IA         GS+G P    +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 334 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
           ++D +    EV   G   I  + G  V     Y K+P  T++    DG+ +TGD+ W+  
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 390 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 449
                        L   GRA D I+ ++G  V P        +   + +  + G      
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 450 GAII 453
           G +I
Sbjct: 514 GQVI 517

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 136
           +DIA   YTSG+T  P+GV++TH+ +   +R++ +D +    GD+ +S LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL---SMLPPWHVY 138
           G++D+A  +YTSGTTGNPKGV + H N+L  +     +      D++L   S+   + V+
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVW 232
Query: 139 ERACGYFIFSRGIELM 154
           E    +  FS G EL+
Sbjct: 233 EI---WGAFSTGAELV 245

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 277 SGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV 335
           S G +LP  I + F    G ++  G G TE   +  + R      G+ G P+   EI++ 
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR 366
Query: 336 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXX 395
           D E    +P G  G + ++G      Y+ N   ++     + W+ +GD     P+     
Sbjct: 367 D-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN----- 419
Query: 396 XXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 446
                   V  GR+ D + +S G+ V P        +   + +  V+G D 
Sbjct: 420 -----GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 278 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 337
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 338 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 392
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 393 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 452
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 492
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 278 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 337
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 338 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 392
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 393 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 452
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 453 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 492
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 83  SDDIATYVYTSGTTGNPKGVMLTHKNL 109
           S D+A  +YTSGTTGNPKG ML HK +
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEHKGI 207

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 315 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 373
           P   ++ + G P++ + E ++ D    +V P G  G +  RG   ++GY+K       + 
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 374 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 413
            EDG+  TGDI                  +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-43
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	6e-16
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-39
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-15
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-38
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	5e-15
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-38
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	9e-15
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	6e-38
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-15
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	5e-37
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-12
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-12
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-35
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-12
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-35
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-11
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-35
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-16
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	8e-35
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-17
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-34
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	8e-15
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-16
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-33
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-16
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-32
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-15
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-31
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-07
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-22
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-12
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-20
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-15
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-06
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-13
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-12
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-05
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	8e-10
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-09
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  160 bits (406), Expect = 2e-43
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 331
           +  +SG   L       +    G  V   YG+TE++   +       V G+VG  +    
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
            ++ D ET + LP G  G+++V+G  V +GY++ P  TK    +DG+  TGD+G I    
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER- 389

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 451
                    G + + GR KD ++ + G NV P E+E        + +  VIG        
Sbjct: 390 ---------GYVHILGRGKDLVI-TGGFNVYPKEIESEIDAMPGVVESAVIG-------- 431

Query: 452 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP------ 503
             VP  +  E + A     +V    + + +         ++         Q+        
Sbjct: 432 --VPHADFGEGVTAV----VVRDKGATIDEA--------QVLHG---LDGQLAKFKMPKK 474

Query: 504 IHVVDE 509
           +  VD+
Sbjct: 475 VIFVDD 480

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 79.2 bits (196), Expect = 6e-16
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 29  IILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD-SNDARKHYKYETIGSDDIA 87
           I++    K      I  ++       +  LG + R + +D +  A + +     G+DD+A
Sbjct: 103 IVVCDPSKRDGIAAIAAKVGA----TVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158

Query: 88  TYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
             +YTSGTTG  KG ML+H NL     +L D       D  +  LP +H +
Sbjct: 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTH 209

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  148 bits (377), Expect = 2e-39
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 275 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 333
            VSG  +LP+H  +    A G +V   YG+TE+    + R       G+VG P+   E++
Sbjct: 277 LVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELR 336

Query: 334 IVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
           +V+ +   +  L   S G ++VRG  +   Y   P AT  A  EDG+  TGD+    P  
Sbjct: 337 LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD- 395

Query: 392 SRGRSRRCGGVLVLEGR-AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR-- 447
                    G + + GR A D I  S G  +   E+E A L    +R+  V G+ D    
Sbjct: 396 ---------GYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445

Query: 448 -RPGAIIVPDKE 458
            R  A IVP   
Sbjct: 446 ERIVAWIVPADP 457

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 78.8 bits (195), Expect = 1e-15
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 79  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
           +     D A  VYTSGTTG PKG ++  + L   + +L D       D  +  LP +HV+
Sbjct: 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH 209

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  146 bits (370), Expect = 3e-38
 Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 330
               SGG  L     +          V+ GYGLTE++  I       +  G+ G  +   
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           + K++D +T + L    +G V V+G  +M+GY  NP ATK+ +DE+GWL+TGDIG+    
Sbjct: 372 KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 432 ----------KHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG------- 473

Query: 451 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 496
              VPD    E+  A     +V      ++++        E+  + + 
Sbjct: 474 ---VPDPVAGELPGAV----VVLESGKNMTEK--------EVMDYVAS 506

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 76.5 bits (189), Expect = 5e-15
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 35  KKSSVAPDIV---EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 91
           K  +    IV    ++    Y  +    + +      ++  +     E    + +A  + 
Sbjct: 143 KTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTV---EVDRKEQVALIMN 199

Query: 92  TSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFS 148
           +SG+TG PKGV LTH+N+       R          G   L+++P  H +          
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259

Query: 149 RGIELM----YTAVRNLKDDLQRYQPHYMISVPLVY 180
            G  ++    +     LK  LQ Y+   +I VP ++
Sbjct: 260 CGFRVVMLTKFDEETFLK-TLQDYKCTSVILVPTLF 294

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  146 bits (370), Expect = 4e-38
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 330
               SGG  L     +   +      ++ GYGLTE++  I       +  G+VG  +   
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           E K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +    
Sbjct: 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 429

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 450
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 430 ----------EHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAG------- 471

Query: 451 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 496
              +PD +  E+  A     +V      ++++        E+  + + 
Sbjct: 472 ---LPDDDAGELPAAV----VVLEHGKTMTEK--------EIVDYVAS 504

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 75.7 bits (187), Expect = 9e-15
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 8/153 (5%)

Query: 35  KKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSG 94
           KK  +   I+       Y     +            +              IA  + +SG
Sbjct: 141 KKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSG 200

Query: 95  TTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 151
           +TG PKGV L H+         R              LS++P  H +           G 
Sbjct: 201 STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGF 260

Query: 152 ELM----YTAVRNLKDDLQRYQPHYMISVPLVY 180
            ++    +     L+  LQ Y+    + VP ++
Sbjct: 261 RVVLMYRFEEELFLR-SLQDYKIQSALLVPTLF 292

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  145 bits (367), Expect = 6e-38
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 42/230 (18%)

Query: 276 VSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 328
            SGG  L   + D         ++  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 329 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
           + E+KIVD ET   LP    G + +RG Q+M+GY  +P AT + +D++GWL+TGDIG+I 
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                         L +  R K+ I    G  V P ELE   +    I    V+G     
Sbjct: 423 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVG----- 466

Query: 449 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 496
                + D++  EV +A     +V ++ S+ +++        E++++ SK
Sbjct: 467 -----LKDEDAGEVPVAF----VVKSEKSQATED--------EIKQYISK 499

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 55  IIDLGRESRKAFSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---- 109
            +D   +    FS+ +           I  DD+    Y+SGTTG PKGVMLTHK L    
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207

Query: 110 LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIELM----YTAVRNLKDD 164
             Q+      +   + D  L +LP +H+Y   +        G  ++    +     L   
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLG-L 266

Query: 165 LQRYQPHYMISVPLVY 180
           +++Y+      VP V 
Sbjct: 267 IEKYKVSIAPVVPPVM 282

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  141 bits (359), Expect = 5e-37
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 331
           +     G ++P   ++  ++ +  +    YG TE+   +  R+P     G+   P   +E
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK---TGTEMAPGFFSE 331

Query: 332 IKIVDAET--NEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
           ++IV      +E++  G +G + V  S     GY   P AT + L  DGW  T D+    
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWT 390

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
           P           G + + GR  D I+ S GEN+ P E+E     +  + ++VVIG     
Sbjct: 391 PE----------GTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEVVVIG----- 434

Query: 449 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 493
                + D+   + + A     +V      LS +         L  +
Sbjct: 435 -----LADQRWGQSVTAC----VVPRLGETLSAD--------ALDTF 464

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVY 138
                 A   YTSGTTG PK  ++  +    ++  +   V   +G  +  L ++P +HV 
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209

Query: 139 ERACG 143
                
Sbjct: 210 GFFAV 214

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  140 bits (356), Expect = 3e-36
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 273 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 329
           K    GG S P  +     E +  K+Q  +G+ E              +  + G PI+  
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
            EIKIVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 370 DEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 447
                      G L + GR KD I    GE +   E+E+  L    +    ++   D++ 
Sbjct: 429 D----------GNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQF 477

Query: 448 --RPGAIIVPDKEEVLMAA 464
             +  A IV    E+    
Sbjct: 478 GEKSCAFIVSRNPELKAVV 496

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 66.4 bits (163), Expect = 7e-12
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 20  LCSKAAMRFIILLWGKKSSVAPDIVEEIP--VFSYDEIIDLGRESRKAFSDS---NDARK 74
              +   + +I     +       ++ +     S + I+ L  ++            A  
Sbjct: 122 FIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET 181

Query: 75  HYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP 134
              + +  +D++A +  + G+TG PK +  TH +  + +R+  +I    +  + L  LP 
Sbjct: 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPA 241

Query: 135 WHVY 138
            H +
Sbjct: 242 PHNF 245

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  139 bits (353), Expect = 1e-35
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 275 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPI 327
              GG  L   +       IG ++Q  +G+ E          T        ++ + G+P+
Sbjct: 307 LQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY-----TRLDDSAEKIIHTQGYPM 361

Query: 328 N-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
               E+ + DAE N + P G  G +  RG    +GY+K+P     A D +G+  +GD+  
Sbjct: 362 CPDDEVWVADAEGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420

Query: 387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QD 445
           I P           G + ++GR KD I    GE +   E+E   LR   +    ++  +D
Sbjct: 421 IDPE----------GYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAVIYAALVSMED 469

Query: 446 QR---RPGAIIVP 455
           +    +  A +V 
Sbjct: 470 ELMGEKSCAYLVV 482

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 40  APDIVEEIPVFSYDEIIDLGRESRKAFSDS-NDARKHYKYETIGSDDIATYVYTSGTTGN 98
               V E    S   +  L         D+ N   + +      +D++A +  + GTTG 
Sbjct: 141 LNTFVTEHS--SIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGT 198

Query: 99  PKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
           PK +  TH +  + +R   +I       ++L  +P  H Y
Sbjct: 199 PKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  138 bits (350), Expect = 1e-35
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 329
           +    GG               G  +Q  +G+ E          P   ++ + G P++ +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 330 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
            E ++ D    +V   G  G +  RG   ++GY+K       +  EDG+  TGDI  +  
Sbjct: 361 DESRVWDDHDRDV-KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 447
                      G +V+EGRAKD I    GE V   E+E   L    +    ++   DQ  
Sbjct: 420 D----------GYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 448 --RPGAIIVPDKEEV 460
             R    I+P  E  
Sbjct: 469 GERSCVFIIPRDEAP 483

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 79  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 138
             + S D+A    + G+TG  K +  TH + ++ ++   ++   ++   +L+ LP  H Y
Sbjct: 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY 236

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  136 bits (344), Expect = 7e-35
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 273 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHT 330
           +  ++GG  +P  +   Y A  ++V  GY LTES                GS G     T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346

Query: 331 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 390
           ++ +   +       G   +V ++   +++ Y+  P AT+ A D +GW  TGDIG I   
Sbjct: 347 DVAVRGDDGVIR-EHGEGEVV-IKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403

Query: 391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR- 448
                     G L ++ R KD I+ S GENV P E+E   +    + ++ VIG  D++  
Sbjct: 404 ----------GYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452

Query: 449 --PGAIIVPDKEEV 460
               AI+V D+ EV
Sbjct: 453 EIAAAIVVADQNEV 466

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 140
            G DD    +YTSGTTG+PKGV+ TH+++     S    +     D+ L  LP +HV   
Sbjct: 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226

Query: 141 ACGYFIFSRG----IELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 183
               F   RG        + A +     +   +     +VP +   +
Sbjct: 227 TTVIFSAMRGVTLISMPQFDATKVW-SLIVEERVCIGGAVPAILNFM 272

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  136 bits (345), Expect = 8e-35
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 273 KAGVSGGGSLPMHI-DLFYEAIGVKVQV-------GYGLTESSPVIAARRPT-CNVLGSV 323
           K   +G   +   + +   +    K           +G+TE+ P++    P   +   + 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 324 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL----DEDGWL 379
           G P++  E+K++  E    L  G  G + +RG  + +GY+K     ++          + 
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418

Query: 380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 439
            TGD+G+I             G L  + R K+ I    G  + P ELE   ++   +  +
Sbjct: 419 RTGDVGFIDEE----------GFLHFQDRVKEVIKYK-GYTIAPFELEALLMKHEAVMDV 467

Query: 440 VVIGQ-DQRR---PGAIIVP--------DKEEVL------MAA-KRLSIVH 471
            VIG+ D+     P A IV         D+E+++      ++  KR+  V 
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVE 518

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 84.9 bits (211), Expect = 1e-17
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 37  SSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD--SNDARKHYKYETIGSDDIATYVYTSG 94
           S +  +    +     + +  +G     + S+   + +      +    +D+A   YT G
Sbjct: 132 SMLYENFKPVLEKTGVERVFVVG-GEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGG 190

Query: 95  TTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM 154
           TTG PKGVMLTH NL      L       + D  +  +P +H  E      + + G E +
Sbjct: 191 TTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYV 250

Query: 155 YTAVRNLK---DDLQRYQPHYMISVPLVYETLYSGIQK 189
              + N +   +++++Y+  +  +VP       + +  
Sbjct: 251 VMGMFNQEMLAENIEKYKGTFSWAVP----PALNVLVN 284

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  137 bits (346), Expect = 2e-34
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 276 VSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 328
            SG   L     D         K+  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 409

Query: 329 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 388
           + E+KIVD +T + L     G + +RG Q+M+GY  NP+AT + +D+DGWL+TGDIG I 
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                         L +  R K+ I    G  V P ELE   +    I  + V+      
Sbjct: 470 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA----- 513

Query: 449 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKE 480
                + ++   EV +A     +V +  SELS++
Sbjct: 514 -----MKEEAAGEVPVAF----VVKSKDSELSED 538

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 76.6 bits (189), Expect = 8e-15
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 47  IPVFSYDEIIDLGR-ESRKAFSD----SNDARKHYKYETIGSDDIATYVYTSGTTGNPKG 101
           + +   D+   +   E    F++    + +A +      I  DD+    Y+SGTTG PKG
Sbjct: 183 VVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKG 242

Query: 102 VMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIEL--M 154
           VMLTHK L      Q+      +   + D  L +LP +H+Y   +        G  +  M
Sbjct: 243 VMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302

Query: 155 --YTAVRNLKDDLQRYQPHYMISVPLVY 180
             +     L+  +QR +      VP + 
Sbjct: 303 PKFEINLLLE-LIQRCKVTVAPMVPPIV 329

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  134 bits (339), Expect = 3e-34
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIK 333
           + GG  L   +        + +   +G+TE+        P        +VG P  + ++K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339

Query: 334 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 393
           I +            G + ++G+ VM GY      T     E+G+ NTGDI  I      
Sbjct: 340 IKNPNKEGH------GELMIKGANVMNGYLYPTDLTG-TF-ENGYFNTGDIAEIDHE--- 388

Query: 394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR---P 449
                  G +++  R KD I+ S GEN+ P ++E  A +   I   V +G  D      P
Sbjct: 389 -------GYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440

Query: 450 GAIIVPDKE 458
               V + +
Sbjct: 441 KLYFVSESD 449

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 17  AETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHY 76
            + +     +            +     +       D  + +  ++        ++  + 
Sbjct: 96  VQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNI 155

Query: 77  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 136
              +   DDIA+ ++TSGTTG  K V  T +N         + +  +    +LS+LP +H
Sbjct: 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYH 215

Query: 137 VYERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 183
           +   +        G  +     + A + L   ++  +  ++  VP     L
Sbjct: 216 ISGLSVLLRAVIEGFTVRIVDKFNAEQIL-TMIKNERITHISLVPQTLNWL 265

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  131 bits (333), Expect = 2e-33
 Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 273 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI----AARRPTCNVLGSVGHPI 327
           +A        P  I+ F            +G +E+S +        RP      S G P+
Sbjct: 275 RAVTGLDT--PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-----KSAGRPL 327

Query: 328 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 387
               + +VDAE   + P G  G + +RG  V +GY+ N +AT+ A   +GW +TGD+G  
Sbjct: 328 FWRTVAVVDAEDRPL-PPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385

Query: 388 APHHSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ- 444
                        G L   GRA  K+ I  + GENV P E+E A  +   I   VVIG  
Sbjct: 386 DAD----------GYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVP 434

Query: 445 DQRR---PGAIIVPDKEEVLMAA 464
           D +      A+ V    E + A 
Sbjct: 435 DPQWSEAIKAVCVCKPGESIAAD 457

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 81  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 140
            G+ D    ++T+   G P+G +++  NLL    SL D       D  L MLP +HV   
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL 216

Query: 141 ACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 183
                +   G   +    +   +    D++ ++   M     +   +
Sbjct: 217 GLMLTLQQAGGASVIAAKFDPAQAA-RDIEAHKVTVMAEFAPMLGNI 262

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  128 bits (324), Expect = 4e-32
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 273 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 331
           +   S G +LP    + F    G ++  G G TE   +  + R      G+ G P+   E
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 332 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 391
           I++ D   + V P G  G + ++G      Y+ N   ++       W+ +GD     P+ 
Sbjct: 363 IELRDEAGHAV-PDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPN- 419

Query: 392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRR-- 448
                    G  V  GR+ D + +S G+ V P+E+E   ++   + +  V+G        
Sbjct: 420 ---------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469

Query: 449 PGAIIVP 455
             A +V 
Sbjct: 470 TRAFVVL 476

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 76.8 bits (190), Expect = 5e-15
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 40  APDIVEEIPVFSYDEIIDLGRESRKAFSDS-----NDARKHYKYETIGSDDIATYVYTSG 94
               +E         I+   RES    +       + A    K    G DDIA ++Y+SG
Sbjct: 134 VTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSG 193

Query: 95  TTGNPKGVMLTHKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSR 149
           +TG PKG + TH NL        + +  I      D   S    +  Y    G  F  S 
Sbjct: 194 STGKPKGTVHTHANLYWTAELYAKPILGIAE---NDVVFSAAKLFFAYGLGNGLTFPLSV 250

Query: 150 GIELMYTAVR----NLKDDLQRYQPHYMISVPLVYETLYSGI 187
           G   +  A R     +   L  ++P     VP    TLY+ +
Sbjct: 251 GATAILMAERPTADAIFARLVEHRPTVFYGVP----TLYANM 288

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  125 bits (317), Expect = 4e-31
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 45/235 (19%)

Query: 276 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG-----------SVG 324
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358

Query: 325 HPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 382
            PI    +++ D E   V P  G + G V+++G  +  GY+ N  AT+ AL  DG+  TG
Sbjct: 359 LPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

Query: 383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 442
           DI                G + ++ R KD I  S GE +  ++LE A +    +++  V+
Sbjct: 418 DIAVWDEE----------GYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 443 GQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 493
                +   RP A++VP                       +E    LL     KW
Sbjct: 467 AIPHPKWQERPLAVVVP----------------RGEKPTPEELNEHLLKAGFAKW 505

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNL-LHQIR-SLYDIVPAENGDKFLSMLPPWHV 137
                  YT+GTTG PKGV+ +H+ L LH +  SL D       D  L ++P +HV
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 231

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 309 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 368
                 P    L S G+PI   E+KI+D +T         G + V+ + V +GY+  P  
Sbjct: 362 FADDNSPGSYKLVSSGNPI--QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE 419

Query: 369 TKQAL--------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 420
           T+ A             +L TGD+G++               L + GR KD I++  G+N
Sbjct: 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIIIY-GKN 467

Query: 421 VEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVHADASEL 477
             P ++E + + S                G   A ++ ++ E      +L+++    +  
Sbjct: 468 HYPQDIEFSLMHSP----------LHHVLGKCAAFVIQEEHE-----YKLTVMCEVKNRF 512

Query: 478 SKEKTISLLYGELRKWTSKCSFQIGPIHVV 507
             +     L+ E+ +   + + Q+    +V
Sbjct: 513 MDDVAQDNLFNEIFELVYE-NHQLEVHTIV 541

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 71  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 130
           +    ++  +I S+DIA   YTSG+T +PKGVM++H NLL  +  ++      +     S
Sbjct: 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFS 213

Query: 131 MLPPWHV 137
            LPP H 
Sbjct: 214 WLPPHHD 220

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 47/222 (21%)

Query: 276 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 334
           V+ G SL P  ++ +    G+ ++  YG TE+       +      G +G   +  +++I
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 335 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 389
           +D + N + P G++G + +R   +       GY  NP  T   +    +   GD G    
Sbjct: 388 IDDKGNVL-PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE 445

Query: 390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 449
                      G     GRA D I  S+G  + P E+E A +    + +  VI       
Sbjct: 446 D----------GYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVETAVIS------ 488

Query: 450 GAIIVPDKEEVLMAAKRLSIVHA-----------DASELSKE 480
                PD         R  +V A           D  +L+KE
Sbjct: 489 ----SPDPV-------RGEVVKAFVVLASQFLSHDPEQLTKE 519

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP-W 135
           GS + +   +TSGT+G PK    ++ +L  + +        +  D   ++    W
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGW 258

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 309 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 368
                      L S   P     ++IVD++T    P G+ G + V G  V  GY++ P  
Sbjct: 382 AKPCAGGGATSLISYMLPR-SPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDE 440

Query: 369 TKQAL-----------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 408
           +++              E  WL TGD G++             G + + GR
Sbjct: 441 SERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 71  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAEN 124
           DA   Y ++       A   YTSG+T  P GV+++H+N+      L              
Sbjct: 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229

Query: 125 GDKFLSMLPPWHV 137
               +S LP +H 
Sbjct: 230 NSALVSWLPFYHD 242

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 286 IDLFYEAIGVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETN 340
            + F E  G+K+  G+G TE+   IA       +P     GS+G P    +I+++D +  
Sbjct: 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKP-----GSIGKPTPGYKIELMDRDGR 412

Query: 341 EVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 395
                G +G + +         +   Y K+P  T++    DG+ +TGD+ W+        
Sbjct: 413 LC-EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDED----- 465

Query: 396 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 429
                G L   GRA D I  ++G  V P E+E A
Sbjct: 466 -----GYLWFVGRADDII-KTSGYKVGPFEVESA 493

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 33/118 (27%)

Query: 82  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL------------ 129
            ++DI    ++SGT G PK V   +   L  I +       E+                 
Sbjct: 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282

Query: 130 -SMLPPWH------VYERACGYFIFSRGIELM--Y---------TAVRNL-KDDLQRY 168
             +   W       VY+     F     +E    Y         T  R L K+DL  Y
Sbjct: 283 GKLYGQWIAGCAVFVYDY--DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHY 338

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 47/353 (13%), Positives = 82/353 (23%), Gaps = 63/353 (17%)

Query: 63  RKAFSDSNDARKHYKYETI----GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD 118
           R+    S+  R+      +     +D       + GTTG PK V+     +   I     
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 119 IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPL 178
                 G        P      A        G      A+R             +   P 
Sbjct: 126 GYQHRPG-------RPSGNTLAAIPTGPHIVGAINKERALR------LGGMFFSIDIDPR 172

Query: 179 VYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 238
             +   S              V               + I            P  L    
Sbjct: 173 WVKRSLSEGDTATVRKYTHHLVDQVQNT------LMNQDIRFLVTT------PPVL---- 216

Query: 239 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI----- 293
                           LL    V  +++ ++        GG    +++D           
Sbjct: 217 --------------RELLKRPEVVLQMKQSL---AQITLGGT--ELNLDEIKFIASEILP 257

Query: 294 GVKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 352
             +    YG T +  V  +    + +               +VD+ T + +  G +G V 
Sbjct: 258 DCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317

Query: 353 V---RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGV 402
           V             +  +A +      G+        I P       +   GV
Sbjct: 318 VTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDRLAD-IEPLKISEGRKVIEGV 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 60.2 bits (147), Expect = 8e-10
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 43  IVEEIPVFSYD-EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 100
           +V  I    ++ ++     ++ K    +N            S D+A YV YTSGTTGNPK
Sbjct: 146 LVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV------PSKSTDLA-YVIYTSGTTGNPK 198

Query: 101 GVMLTHKNLLHQIRSLYDIVPAENGDKFL 129
           G ML HK + +      + +     D+  
Sbjct: 199 GTMLEHKGISNLKVFFENSLNVTEKDRIG 227

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 54  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 112
           + +             +  +       +   +   Y+ YTSG+TGNPKGV ++  NL   
Sbjct: 119 QTVSAEELLENEGGSVSQDQ------WVKEHETF-YIIYTSGSTGNPKGVQISAANLQSF 171

Query: 113 IRSLYDIVPAENGDKFL 129
              +    P   G  FL
Sbjct: 172 TDWICADFPVSGGKIFL 188

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 57.1 bits (139), Expect = 7e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 80  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 129
            +  D+   Y+ YTSG+TGNPKGV +T+  L+   +   +    + G  FL
Sbjct: 140 AVKGDENF-YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 54  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 112
             + +  ++R     S+ A        I  +D A Y+ YTSGTTG PKG + TH N+   
Sbjct: 583 TTLFIDDQTRFEEQASDPAT------AIDPNDPA-YIMYTSGTTGKPKGNITTHANIQGL 635

Query: 113 IRSLYDIVPAENGDKFL 129
           ++ + D +   + D FL
Sbjct: 636 VKHV-DYMAFSDQDTFL 651

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 42  DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 100
           +  + + +    +++D   +S      + D            +  A Y+ YTSG+TG PK
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDIL--NNYPENLDA-YLLYTSGSTGTPK 191

Query: 101 GVMLTHKNLLHQIRSLYDIVPAENGDKF 128
           GV ++  NL     +   ++        
Sbjct: 192 GVRVSRHNLSSFSDAWGKLIGNVAPKSL 219

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 54.1 bits (131), Expect = 7e-08
 Identities = 54/327 (16%), Positives = 94/327 (28%), Gaps = 93/327 (28%)

Query: 54  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHK---NL 109
            ++ L        ++    R H    ++  DD   Y+ +TSGTTG PKGV ++H    + 
Sbjct: 119 SLVSLSEIESAKLAEMPYERTH----SVKGDDNY-YIIFTSGTTGQPKGVQISHDNLLSF 173

Query: 110 LH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQR 167
            +     + +D+       + L+  P           + F                D   
Sbjct: 174 TNWMIEDAAFDVPK---QPQMLAQPP-----------YSF----------------D--- 200

Query: 168 YQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 227
                 +SV     TL  G                   +   F             +   
Sbjct: 201 ------LSVMYWAPTLALG----------GTLFALPKELVADFKQ--LFTTIAQLPVGIW 242

Query: 228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HI 286
              PS+    +                + A                     G  L +   
Sbjct: 243 TSTPSFADMAMLSDDFC-------QAKMPALTHF--------------YFDGEELTVSTA 281

Query: 287 DLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINHTEIKIVDAET 339
              +E     K+   YG TE++       +          L  +G+P   +   I+D + 
Sbjct: 282 RKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL-PIGYPKPDSPTYIIDEDG 340

Query: 340 NEVLPAGSKGIVKVRGSQVMQGYFKNP 366
            E+  +G +G + V G  V +GY  NP
Sbjct: 341 KEL-SSGEQGEIIVTGPAVSKGYLNNP 366

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 80  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNL--LHQIRSLYDIVPAENGDKFL 129
              +D IA Y+ ++SGTTG PK +  TH  +  L   +S     P     +FL
Sbjct: 160 CFAADQIA-YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAP---QMRFL 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 72/506 (14%), Positives = 142/506 (28%), Gaps = 160/506 (31%)

Query: 42  DIVEEI-PVFS---YDEIIDLGRE---SRKAFSDSNDARKHYKYETIGSDDIATYVY-TS 93
           D+ +    + S    D II        + + F      ++    + +       Y +  S
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 94  GTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIEL 153
                 +   +  +  + Q   LY+            +   ++V          SR ++ 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ---------VFAKYNV----------SR-LQP 136

Query: 154 MYTAVRNLKDDLQRYQPHYMISVPLVYETLY--SGIQKQIFTSSAARRVVARALIRISFA 211
                  L+  L   +P   +        +    G  K             +   ++ F 
Sbjct: 137 ----YLKLRQALLELRPAKNV-------LIDGVLGSGKTWVALDVCLS--YKVQCKMDF- 182

Query: 212 YTAFKRIYEGFCLT-RNQKQPSYLVALIDWLWARI----------ICAILWPLHLLAEKL 260
                   + F L  +N   P  ++ ++  L  +I             I   +H +  +L
Sbjct: 183 --------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 261 -------VYKKIQSAIGISKAGVSGGGSL--------PMHIDLFYEAIGVKVQVGYGLTE 305
                   Y+                  L            + F   +  K+ +    T 
Sbjct: 235 RRLLKSKPYEN----------------CLLVLLNVQNAKAWNAF--NLSCKILL---TTR 273

Query: 306 SSPVIAARRPTCNVLGS--VGH-PINHTEIKIVDAETNEVLPAGSKGIVKVRGS----QV 358
              V        + L +    H  ++H  + +   E   +L    K  +  R      +V
Sbjct: 274 FKQVT-------DFLSAATTTHISLDHHSMTLTPDEVKSLL---LK-YLDCRPQDLPREV 322

Query: 359 MQGYFKNPSATKQ--ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 416
           +     NP           D  L T D  W   H              +      TI+ S
Sbjct: 323 LTT---NPRRLSIIAESIRD-GLATWD-NW--KH--------------VNCDKLTTIIES 361

Query: 417 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV-----PDKEEVLMAAKRL---S 468
           +   +EP E  +      +  ++ V       P  ++        K +V++   +L   S
Sbjct: 362 SLNVLEPAEYRK------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 469 IVHADASELSKEKTISL--LYGELRK 492
           +V        KE TIS+  +Y EL+ 
Sbjct: 416 LVEKQ----PKESTISIPSIYLELKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.05
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.02
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.95
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.92
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.87

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2e-58  Score=488.93  Aligned_cols=392  Identities=22%  Similarity=0.292  Sum_probs=237.3

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+.+..+.+.+....++.++.+++++.....        ....++.+++............      ..+.....++|
T Consensus       126 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d  191 (550)
T 3rix_A          126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY--------QGFQSMYTFVTSHLPPGFNEYD------FVPESFDRDKT  191 (550)
T ss_dssp             EEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB--------TTBCBHHHHHHHHCCTTCCTTT------CCCCCCCTTTS
T ss_pred             EEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc--------cCcccHHHHhhccccccccccc------cCCCCCCCCCC
Confidence            444567788888887788888888887543211        1235677776543321110000      00112234689


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chh
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR  159 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~  159 (520)
                      +++|+|||||||.||||++||+++.+.+......   +++.++|++++++|++|.+++...+.++..|+++++.   ++.
T Consensus       192 ~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~  271 (550)
T 3rix_A          192 IALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE  271 (550)
T ss_dssp             EEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHH
T ss_pred             EEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence            9999999999999999999999998877766544   4678899999999999999998888889999999884   678


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.|+++++|+++++|+++..+.......                                                 
T Consensus       272 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  302 (550)
T 3rix_A          272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLID-------------------------------------------------  302 (550)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHHHHHHCCGGG-------------------------------------------------
T ss_pred             HHHHHHHHcCCeEEEeCcHHHHHHHhCcccc-------------------------------------------------
Confidence            8999999999999999999998875421000                                                 


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCe-eeecccccccccceeccCCCC
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTC  317 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~  317 (520)
                                                ...+..+|.+++||+++++++ +++.+.++.. +++.||+||++..++......
T Consensus       303 --------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  356 (550)
T 3rix_A          303 --------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD  356 (550)
T ss_dssp             --------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC
T ss_pred             --------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC
Confidence                                      012334589999999999987 5666778875 899999999998887776666


Q ss_pred             CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCcc
Q 010017          318 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  397 (520)
Q Consensus       318 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~  397 (520)
                      ...+++|+|+|+++++|+|+++++++++|+.|||+|+||++++|||++|+.|++.|+.+|||+|||+|++++        
T Consensus       357 ~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~--------  428 (550)
T 3rix_A          357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE--------  428 (550)
T ss_dssp             CCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT--------
T ss_pred             CCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC--------
Confidence            677899999999999999988899999999999999999999999999999999998899999999999999        


Q ss_pred             ccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017          398 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  473 (520)
Q Consensus       398 ~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  473 (520)
                        ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.++|++.++               
T Consensus       429 --dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~---------------  490 (550)
T 3rix_A          429 --DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG---------------  490 (550)
T ss_dssp             --TCCEEEC-----------------------------------------------------------------------
T ss_pred             --CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC---------------
Confidence              8999999999999997 9999999999999999999999999998765    34577776544               


Q ss_pred             ccccChHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCcCCCcc
Q 010017          474 ASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL  518 (520)
Q Consensus       474 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~~~g~l  518 (520)
                       ...+.+++++++++++..+.     .++ .|.++++.+...|||+
T Consensus       491 -~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi  530 (550)
T 3rix_A          491 -KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKL  530 (550)
T ss_dssp             ----------------------------------------------
T ss_pred             -CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCcce
Confidence             34567889999999998876     344 5889999999999987

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=9.9e-58  Score=483.06  Aligned_cols=392  Identities=23%  Similarity=0.352  Sum_probs=310.4

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC-
Q 010017            3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI-   81 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (520)
                      +++++ +++..+.+.+....++..+.++++++....        ....++++++..+.....+.     . . ...... 
T Consensus       126 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~~~  189 (548)
T 2d1s_A          126 TIVFS-SKKGLDKVITVQKTVTTIKTIVILDSKVDY--------RGYQCLDTFIKRNTPPGFQA-----S-S-FKTVEVD  189 (548)
T ss_dssp             SEEEE-CTTTHHHHHHHHHHSTTCCEEEETTCSSCB--------TTBCBHHHHHHHTSCTTCCG-----G-G-CCCCCCC
T ss_pred             eEEEE-cHHHHHHHHHHhcCCCCCCEEEEeCCcccc--------cccccHHHHHhcCccccCCc-----c-c-ccccccC
Confidence            34444 456667776665556656666665432100        01245777765432110000     0 0 000011 


Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEec-
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~~-  156 (520)
                      .++|+++|+|||||||.||||++||+++.+.+......   +++.++|++++++|++|.+++... +.++ .|+++++. 
T Consensus       190 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~  268 (548)
T 2d1s_A          190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT  268 (548)
T ss_dssp             TTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred             CCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence            23999999999999999999999999999888776665   678899999999999999998764 4456 99998874 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|+++++|+++..+.+.....                                            
T Consensus       269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  304 (548)
T 2d1s_A          269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN--------------------------------------------  304 (548)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG--------------------------------------------
T ss_pred             CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc--------------------------------------------
Confidence              6889999999999999999999998875420000                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                     ...+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++..++.
T Consensus       305 -------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  353 (548)
T 2d1s_A          305 -------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII  353 (548)
T ss_dssp             -------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             -------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence                                           012233489999999999987 5666677 6889999999999877766


Q ss_pred             cCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCC
Q 010017          313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~  392 (520)
                      ........+++|+|+|+++++|+|+++++++++|+.|||+++||++++|||++|+.|++.|+.+|||+|||+|++++   
T Consensus       354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~---  430 (548)
T 2d1s_A          354 TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE---  430 (548)
T ss_dssp             CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT---
T ss_pred             cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC---
Confidence            54444567899999999999999987899999999999999999999999999999999998899999999999998   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  468 (520)
                             ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.|+|++.++          
T Consensus       431 -------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~----------  492 (548)
T 2d1s_A          431 -------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG----------  492 (548)
T ss_dssp             -------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred             -------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC----------
Confidence                   8999999999999996 9999999999999999999999999998654    56788888654          


Q ss_pred             CCcCCccccChHHHHHHHHHHHHHHhccCCCccc-cEEEecCCCCcCCCcc
Q 010017          469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL  518 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~~~g~l  518 (520)
                            ...+.++++++++++|+.|+.     ++ +|.++++.+...+||+
T Consensus       493 ------~~~~~~~l~~~~~~~l~~~~~-----p~~~i~~v~~lP~t~~GKi  532 (548)
T 2d1s_A          493 ------KNMTEKEVMDYVASQVSNAKR-----LRGGVRFVDEVPKGLTGKI  532 (548)
T ss_dssp             ------CCCCHHHHHHHHHTTSCGGGS-----CTTCEEECSSCCBCTTSCB
T ss_pred             ------CCCCHHHHHHHHHHhcccccc-----ccccEEEccCCCCCCcchh
Confidence                  345788999999999999984     46 7999999999999997

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=7.6e-58  Score=483.03  Aligned_cols=332  Identities=29%  Similarity=0.467  Sum_probs=285.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEE
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM  154 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~  154 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+.....    .+++.++|++++++|++|.+++.. .+.++..|++++
T Consensus       174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v  253 (536)
T 3ni2_A          174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPIL  253 (536)
T ss_dssp             CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEE
T ss_pred             CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEE
Confidence            457899999999999999999999999999887665543    356788999999999999999865 456788999988


Q ss_pred             ec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          155 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       155 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +.   ++..+++.++++++|++.++|+++..+.+....                                          
T Consensus       254 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------  291 (536)
T 3ni2_A          254 IMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL------------------------------------------  291 (536)
T ss_dssp             ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG------------------------------------------
T ss_pred             EcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc------------------------------------------
Confidence            84   678899999999999999999999877542100                                          


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccc
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPV  309 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~  309 (520)
                                                       ....+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++.+
T Consensus       292 ---------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~  338 (536)
T 3ni2_A          292 ---------------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPV  338 (536)
T ss_dssp             ---------------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSE
T ss_pred             ---------------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchh
Confidence                                             0012334589999999999987 5556667 8999999999999876


Q ss_pred             eeccC-----CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCce
Q 010017          310 IAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  384 (520)
Q Consensus       310 ~~~~~-----~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDl  384 (520)
                      ++...     +.....+++|+|+++++++|+|+++++++++|+.|||+++||++++|||++|+.|++.|+.+|||+|||+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl  418 (536)
T 3ni2_A          339 LAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDI  418 (536)
T ss_dssp             EEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEE
T ss_pred             hhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccE
Confidence            55431     2234568999999999999999888999999999999999999999999999999999988999999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  460 (520)
                      |++++          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.|+|++.++  
T Consensus       419 ~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~--  485 (536)
T 3ni2_A          419 GYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK--  485 (536)
T ss_dssp             EEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--
T ss_pred             EEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC--
Confidence            99999          8999999999999997 9999999999999999999999999997543    56788887654  


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                    ...+.++++++++++|+.|+     .+++|.++++.+...|||+
T Consensus       486 --------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi  524 (536)
T 3ni2_A          486 --------------SQATEDEIKQYISKQVIFYK-----RIKRVFFIEAIPKAPSGKI  524 (536)
T ss_dssp             --------------CCCCHHHHHHHHHTTSCGGG-----CCSEEEECSCCCBCTTSCB
T ss_pred             --------------CCCCHHHHHHHHHHhccCCc-----cccEEEEEecCCCCCCCCe
Confidence                          45678899999999999998     5577999999999999997

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.2e-57  Score=477.48  Aligned_cols=384  Identities=23%  Similarity=0.394  Sum_probs=288.4

Q ss_pred             EEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCC-
Q 010017            4 ALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG-   82 (520)
Q Consensus         4 ~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (520)
                      ++++ +..+.+.+.+.....+ ++.+++.++.             ..+++++...+....             +..... 
T Consensus       127 ~~i~-~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~-------------~~~~~~~  178 (549)
T 3g7s_A          127 TLVV-HSMLYENFKPVLEKTG-VERVFVVGGE-------------VNSLSEVMDSGSEDF-------------ENVKVNP  178 (549)
T ss_dssp             EEEE-EGGGHHHHHHHHTTSC-CCEEEEETCS-------------SSCHHHHHHHSCSCC-------------CCCCCCT
T ss_pred             EEEE-ChHHHHHHHHHHhhCC-CcEEEEeCCC-------------CcCHHHHHhcCcccc-------------ccccCCC
Confidence            3444 4566777777665544 5666665321             135677665432210             112223 


Q ss_pred             CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---chh
Q 010017           83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR  159 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---~~~  159 (520)
                      ++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.   ++.
T Consensus       179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  258 (549)
T 3g7s_A          179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE  258 (549)
T ss_dssp             TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred             CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence            49999999999999999999999999999988888888999999999999999999988877788889988874   688


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.|+++++|+++++|+++..+++.......                                               
T Consensus       259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------------------------------------  291 (549)
T 3g7s_A          259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-----------------------------------------------  291 (549)
T ss_dssp             HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------------------------------------------
T ss_pred             HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------------------------------------------
Confidence            999999999999999999999988664322100                                               


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHH----hC---Ceeeeccccccccccee
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTESSPVIA  311 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~----~g---~~v~~~YG~TE~~~~~~  311 (520)
                                                ...+..+|.+++||+++++++ +++.+.    ++   +++++.||+||++.+++
T Consensus       292 --------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  345 (549)
T 3g7s_A          292 --------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT  345 (549)
T ss_dssp             --------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred             --------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence                                      011233489999999999887 455554    56   89999999999998777


Q ss_pred             ccCCCC-CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC--CCC--ccccCceee
Q 010017          312 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGW  386 (520)
Q Consensus       312 ~~~~~~-~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~--~~g--w~~TGDlg~  386 (520)
                      ...... ...+++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.|+++|.  .+|  ||+|||+|+
T Consensus       346 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~  425 (549)
T 3g7s_A          346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF  425 (549)
T ss_dssp             ECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEE
T ss_pred             cCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEE
Confidence            655433 456789999999999999988899999999999999999999999999999999983  467  999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.|+|++.++.   
T Consensus       426 ~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~---  491 (549)
T 3g7s_A          426 IDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY---  491 (549)
T ss_dssp             ECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT---
T ss_pred             EcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc---
Confidence            999          8999999999999997 9999999999999999999999999998765    466888886531   


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                 ....+.++++++++++|+.|+.|     +.|.++++.+...|||+
T Consensus       492 -----------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  531 (549)
T 3g7s_A          492 -----------RGKVDEEDIIEWVRERISGYKRV-----REVEFVEELPRTASGKL  531 (549)
T ss_dssp             -----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC-------
T ss_pred             -----------cCcCCHHHHHHHHHHhccCcccc-----eEEEEeccCCCCCCcCE
Confidence                       13467899999999999999844     67888999999999997

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2e-57  Score=476.00  Aligned_cols=330  Identities=27%  Similarity=0.408  Sum_probs=284.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++.+|++|.+++.. .+.++..|+++++.  
T Consensus       151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  230 (503)
T 4fuq_A          151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK  230 (503)
T ss_dssp             CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred             CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence            456899999999999999999999999999999888888899999999999999999998765 45567888888774  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++  ++|+++++|+++..++.....                                              
T Consensus       231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  262 (503)
T 4fuq_A          231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL----------------------------------------------  262 (503)
T ss_dssp             CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC----------------------------------------------
T ss_pred             CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc----------------------------------------------
Confidence             6788888887  899999999999887542100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                   ....++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++...
T Consensus       263 -----------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  313 (503)
T 4fuq_A          263 -----------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY  313 (503)
T ss_dssp             -----------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS
T ss_pred             -----------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC
Confidence                                         0012233589999999999887 5666778999999999999987654433


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      ......+++|+|+|+++++|+|+++++++|+|+.|||+++||++++|||++|+.|+++|..+|||+|||+|++++     
T Consensus       314 ~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~-----  388 (503)
T 4fuq_A          314 DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE-----  388 (503)
T ss_dssp             SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT-----
T ss_pred             CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC-----
Confidence            344556899999999999999988899999999999999999999999999999999999899999999999999     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.++|+++++            
T Consensus       389 -----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~------------  450 (503)
T 4fuq_A          389 -----RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG------------  450 (503)
T ss_dssp             -----TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------
T ss_pred             -----CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC------------
Confidence                 8999999999999996 9999999999999999999999999997653    46788888754            


Q ss_pred             cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ...+.++++++++++|+.|+     .+++|.++++.+...|||+
T Consensus       451 ----~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  489 (503)
T 4fuq_A          451 ----ATIDEAQVLHGLDGQLAKFK-----MPKKVIFVDDLPRNTMGKV  489 (503)
T ss_dssp             ----CCCCHHHHHHHHBTTBCGGG-----CCSEEEEESCCCBCTTSCB
T ss_pred             ----CCCCHHHHHHHHHhhcccCC-----CCCEEEEECCCCCCcccce
Confidence                45678899999999999998     4578999999999999997

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=4.3e-57  Score=477.66  Aligned_cols=379  Identities=23%  Similarity=0.366  Sum_probs=269.2

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      +++++++.+.+.+....++.++.++++++....         ...++++++.....                .....++|
T Consensus       123 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----------------~~~~~~~~  177 (541)
T 1v25_A          123 LLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE---------GYLAYEEALGEEAD----------------PVRVPERA  177 (541)
T ss_dssp             EEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT---------TCEEHHHHCCSCCC----------------CCCCCTTS
T ss_pred             EEEChhHHHHHHHHHhhCCCccEEEEecCCCCc---------ccccHHHHhhccCC----------------cccCCCCC
Confidence            344567777777777677778888776432110         12456655322110                12346799


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHHh--hhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chh
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVR  159 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~  159 (520)
                      +++|+|||||||.||||++||+++.+.....  ...+++.++|++++++|++|.+++...+.++..|+++++.    ++.
T Consensus       178 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~  257 (541)
T 1v25_A          178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPA  257 (541)
T ss_dssp             EEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHH
T ss_pred             cEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHH
Confidence            9999999999999999999999998766552  3456788999999999999999987677788899998874    678


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+++.|+++++|+++++|+++..+++.....                                                 
T Consensus       258 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------------  288 (541)
T 1v25_A          258 SLVELFDGEGVTFTAGVPTVWLALADYLEST-------------------------------------------------  288 (541)
T ss_dssp             HHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             HHHHHHHhcCeeEEecchHHHHHHHhhhhcc-------------------------------------------------
Confidence            8999999999999999999998886542211                                                 


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC--
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  317 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  317 (520)
                                                ...+..+|.+++||+++++++.+.++.+|+++++.||+||++..++......  
T Consensus       289 --------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~  342 (541)
T 1v25_A          289 --------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHL  342 (541)
T ss_dssp             --------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGG
T ss_pred             --------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccccc
Confidence                                      0123345899999999999985444778999999999999987766554321  


Q ss_pred             ---------CCccccccCcCCeEEEEEeCCCCCcCCC--CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017          318 ---------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       318 ---------~~~~~~G~~~~~~~v~ivd~~~~~~~~~--g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                               ...+++|+|+|+++++|+|+ ++++++.  ++.|||+++||+++.|||++|+.|+++|..+|||+|||+|+
T Consensus       343 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~  421 (541)
T 1v25_A          343 ESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV  421 (541)
T ss_dssp             TTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred             cccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEE
Confidence                     12478999999999999995 5788874  36899999999999999999999999998899999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          ||+++|+||+||+||. +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++. +    
T Consensus       422 ~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~----  485 (541)
T 1v25_A          422 WDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-G----  485 (541)
T ss_dssp             ECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred             EcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-C----
Confidence            998          8999999999999996 9999999999999999999999999998654    567877765 2    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                  ...+.+++++++++ .|+.|+     .++.|.++++.+...+||+
T Consensus       486 ------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  525 (541)
T 1v25_A          486 ------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF  525 (541)
T ss_dssp             ---------------------------CCCTTT-----SCSBC--------------
T ss_pred             ------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCe
Confidence                        23355678888888 788777     4577889999999999987

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.3e-55  Score=469.40  Aligned_cols=392  Identities=19%  Similarity=0.213  Sum_probs=298.7

Q ss_pred             cEEEEEcChh-hHHHHHHHhccCCCc-eEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccC
Q 010017            2 CVALAVENPE-FFNRIAETLCSKAAM-RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYE   79 (520)
Q Consensus         2 ~~~~vv~~~~-~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (520)
                      ++++|+.... ..+.+.++...++.+ ..++.+++...         ....++.+++..........         ....
T Consensus       159 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~---------~~~~  220 (580)
T 3etc_A          159 LKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL---------EGWIDFRKELEESSPIFERP---------TGEV  220 (580)
T ss_dssp             CCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC---------TTCEEHHHHHHHSCSCCCCC---------CGGG
T ss_pred             CCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc---------cccccHHHHHhhCCcccccC---------cccc
Confidence            3455554332 235555555555555 55555543211         12356777665432211000         0012


Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~--  156 (520)
                      ...++|+++|+|||||||.||||+++|.++...+......+++.+++++++.+|++|..+... .+.++..|+++++.  
T Consensus       221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~  300 (580)
T 3etc_A          221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY  300 (580)
T ss_dssp             SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred             CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence            457899999999999999999999999998887777666778899999999999999888765 45678889988763  


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.|+++++|+++++|+++..+....      .                                       
T Consensus       301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------~---------------------------------------  335 (580)
T 3etc_A          301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------L---------------------------------------  335 (580)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------C---------------------------------------
T ss_pred             CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------c---------------------------------------
Confidence               5788999999999999999999998775410      0                                       


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  312 (520)
                                                     ....+..+|.+++||+++++++ +++.+.+|++++++||+||++..++.
T Consensus       336 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  384 (580)
T 3etc_A          336 -------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT  384 (580)
T ss_dssp             ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred             -------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence                                           0012334599999999999987 66667789999999999999877766


Q ss_pred             cCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec-----CCCCccccCCchhhhcccCCCCccccCceeee
Q 010017          313 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  387 (520)
Q Consensus       313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g-----p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~  387 (520)
                      .+......+++|+|+|+++++|+|+ +++++|+|+.|||+++|     +++++|||++|+.|+++|. +|||+|||+|++
T Consensus       385 ~~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~  462 (580)
T 3etc_A          385 FPWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWM  462 (580)
T ss_dssp             CTTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEE
T ss_pred             CCCCCCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEE
Confidence            5555567789999999999999995 58999999999999997     7899999999999999995 899999999999


Q ss_pred             ccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHH
Q 010017          388 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  463 (520)
Q Consensus       388 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~  463 (520)
                      ++          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.|+|++.++.    
T Consensus       463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----  527 (580)
T 3etc_A          463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----  527 (580)
T ss_dssp             CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----
T ss_pred             CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----
Confidence            99          8999999999999997 8999999999999999999999999998664    466888876541    


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          464 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               ...+...+++++++++.|+.|+     .++.|.++++.+...|||+
T Consensus       528 ---------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~sGKi  568 (580)
T 3etc_A          528 ---------TPSDSLKNELQDHVKNVTAPYK-----YPRIIEFVPELPKTISGKI  568 (580)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHSCGGG-----CCSEEEEECC---------
T ss_pred             ---------CCCHHHHHHHHHHHHhhCCCcc-----CCeEEEEeCCCCCCCCcCC
Confidence                     0011234678888888888888     4577999999999999997

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.1e-56  Score=470.84  Aligned_cols=330  Identities=19%  Similarity=0.298  Sum_probs=281.8

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~-  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..  .+.++..|+++++. 
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  257 (539)
T 1mdb_A          178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP  257 (539)
T ss_dssp             CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             CCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC
Confidence            457899999999999999999999999999998888888888999999999999999999875  56678999999884 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+++.....                                            
T Consensus       258 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  293 (539)
T 1mdb_A          258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------------------------------  293 (539)
T ss_dssp             SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------------------------
T ss_pred             CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------------------------------
Confidence              5788999999999999999999998886532110                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +++.+.+|+++++.||+||++...+..
T Consensus       294 -------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  342 (539)
T 1mdb_A          294 -------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRL  342 (539)
T ss_dssp             -------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCT
T ss_pred             -------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCC
Confidence                                           012234589999999999987 556667899999999999965433221


Q ss_pred             CCC-CCCccccccCcCC-eEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RPT-CNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~-~~~~~~~G~~~~~-~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      ... ....+++|+|+++ .+++|+| ++++++++|+.|||+++||++++|||++|+.|+++|..+|||+|||+|++++  
T Consensus       343 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~--  419 (539)
T 1mdb_A          343 DDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR--  419 (539)
T ss_dssp             TSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred             CCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC--
Confidence            111 1234789999975 5899999 4689999999999999999999999999999999998899999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++..          
T Consensus       420 --------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~----------  480 (539)
T 1mdb_A          420 --------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD----------  480 (539)
T ss_dssp             --------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS----------
T ss_pred             --------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC----------
Confidence                    8999999999999995 9999999999999999999999999998654    5678888752          


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                             ...+.++++++++++ |+.|+     .+++|.++++.+...|||+
T Consensus       481 -------~~~~~~~l~~~l~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  520 (539)
T 1mdb_A          481 -------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKV  520 (539)
T ss_dssp             -------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCB
T ss_pred             -------CCCCHHHHHHHHHhCCCCccc-----CCCEEEEeccCCCCCCcCE
Confidence                   235678999999997 99998     4578999999999999997

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.9e-55  Score=467.36  Aligned_cols=387  Identities=18%  Similarity=0.237  Sum_probs=305.4

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCC
Q 010017            3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG   82 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (520)
                      +++|+ ++++.+.+.++...++.++.++++++....         ....+++++......             .+.....
T Consensus       148 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------------~~~~~~~  204 (570)
T 3c5e_A          148 KAIVA-GDEVIQEVDTVASECPSLRIKLLVSEKSCD---------GWLNFKKLLNEASTT-------------HHCVETG  204 (570)
T ss_dssp             SEEEE-ETTTHHHHHHHGGGCTTCCEEEEESSSCCT---------TSEEHHHHHHHSCSC-------------CCCCCCB
T ss_pred             eEEEe-chHHHHHHHHHhhcCCceeEEEEecccCcc---------ccccHHHHhhccccc-------------ccccCCC
Confidence            44555 456777787777777888888776532111         134677776532211             0112356


Q ss_pred             CCCEEEEEecCCCCCCchhhhhchHHHHH-HHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec----
Q 010017           83 SDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----  156 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~----  156 (520)
                      ++|+++|+|||||||.||||++||+.+.. ..... ..+++.++|++++.+|++|.+++.. .+.++..|+++++.    
T Consensus       205 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~  283 (570)
T 3c5e_A          205 SQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK  283 (570)
T ss_dssp             TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS
T ss_pred             CCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC
Confidence            89999999999999999999999994332 33333 6678899999999999999999874 56678889988764    


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.|+++++|+++++|+++..+.+..      ..                                        
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~----------------------------------------  317 (570)
T 3c5e_A          284 FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS----------------------------------------  317 (570)
T ss_dssp             CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT----------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc----------------------------------------
Confidence             5788999999999999999999998775420      00                                        


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                    ...+..+|.+++||+++++++ +++.+.+|+++++.||+||++..++...
T Consensus       318 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  367 (570)
T 3c5e_A          318 ------------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK  367 (570)
T ss_dssp             ------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred             ------------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc
Confidence                                          011233489999999999887 6666678999999999999987665544


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEe-----cCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~-----gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      ......+++|+|+++++++|+|+ +++++|+|+.|||+++     ||+++.|||++|+.|++.|. +|||+|||+|++++
T Consensus       368 ~~~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~  445 (570)
T 3c5e_A          368 TMKIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDE  445 (570)
T ss_dssp             TSCCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECT
T ss_pred             ccccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcC
Confidence            33456689999999999999995 5899999999999999     99999999999999999995 89999999999998


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  465 (520)
                                ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.++..     
T Consensus       446 ----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-----  509 (570)
T 3c5e_A          446 ----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL-----  509 (570)
T ss_dssp             ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-----
T ss_pred             ----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-----
Confidence                      8999999999999996 9999999999999999999999999998653    5678888865410     


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            ....+...+++++++++.|+.|+     .++.|.++++.+...+||+
T Consensus       510 ------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  551 (570)
T 3c5e_A          510 ------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKI  551 (570)
T ss_dssp             ------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCB
T ss_pred             ------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCC
Confidence                  00011235678888888888888     4578999999999999997

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.7e-56  Score=464.39  Aligned_cols=335  Identities=26%  Similarity=0.365  Sum_probs=277.2

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  229 (505)
T 3nyq_A          150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG  229 (505)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred             CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            3457899999999999999999999999999999888888889999999999999999999876 56678999998874 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.+ ++++|+++++|+++..+.......    +.                                      
T Consensus       230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----~~--------------------------------------  266 (505)
T 3nyq_A          230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD----PE--------------------------------------  266 (505)
T ss_dssp             SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC----HH--------------------------------------
T ss_pred             CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC----ch--------------------------------------
Confidence              567788888 789999999999998886532110    00                                      


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                    ....+..+|.+++||++++.++ +++.+.+|++++|.||+||++..++..
T Consensus       267 ------------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  316 (505)
T 3nyq_A          267 ------------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVR  316 (505)
T ss_dssp             ------------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred             ------------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccC
Confidence                                          0001112388999999999987 566667899999999999998777665


Q ss_pred             CCCCCCccccccCcCCeEEEEEeCCCCCcCCC---CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          314 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       314 ~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~---g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      .......+++|+|+++++++|+|+ ++++++.   |+.|||+++||+++.|||++|+.|+++|..+|||+|||+|++++ 
T Consensus       317 ~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~-  394 (505)
T 3nyq_A          317 ADGEPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP-  394 (505)
T ss_dssp             TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred             CCCCCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC-
Confidence            555566789999999999999995 4777765   89999999999999999999999999999899999999999999 


Q ss_pred             CCCCCccccCcEEEEEccc-cceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~  465 (520)
                               ||+++|+||+ ||+||. +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|++..+       
T Consensus       395 ---------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~-------  457 (505)
T 3nyq_A          395 ---------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP-------  457 (505)
T ss_dssp             ---------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-------
T ss_pred             ---------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-------
Confidence                     8999999998 588986 999999999999999999999999999865    357899998642       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ....+.++++++++++|+.|+.     ++.|.++++.+...|||+
T Consensus       458 --------~~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  497 (505)
T 3nyq_A          458 --------AAPPALGTLADHVAARLAPHKR-----PRVVRYLDAVPRNDMGKI  497 (505)
T ss_dssp             --------TSCCCHHHHHHHHHHHTCGGGS-----CSEEEECSCCCC------
T ss_pred             --------CCCCCHHHHHHHHHhhCCCCcC-----ccEEEEECCCCCCCCcCe
Confidence                    1345678999999999999994     478999999999999997

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=9.2e-56  Score=464.89  Aligned_cols=329  Identities=26%  Similarity=0.367  Sum_probs=279.5

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~  244 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ  244 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence            345789999999999999999999999999999988888888999999999999999999998766666689988874  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|++.++|+++..+.......                                             
T Consensus       245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  279 (517)
T 3r44_A          245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA---------------------------------------------  279 (517)
T ss_dssp             CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH---------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc---------------------------------------------
Confidence             6889999999999999999999998875531110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                    ...+..+|.+++||+++++++.+.+...++++++.||+||++..++....
T Consensus       280 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  329 (517)
T 3r44_A          280 ------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS  329 (517)
T ss_dssp             ------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred             ------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence                                          01223358999999999999866665569999999999999876665443


Q ss_pred             C--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          316 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       316 ~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                      .  ....+++|+|.++++++++|+ ++++++.| .|||+++||+++.|||++|+.|+++| .+|||+|||+|++++    
T Consensus       330 ~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~----  402 (517)
T 3r44_A          330 EDALRKAGSAGRATMFTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD----  402 (517)
T ss_dssp             GGTTTTTTCCBEECTTEEEEEECT-TSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT----
T ss_pred             ccccccCCCCCcCCCCeEEEEECC-CCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC----
Confidence            2  345688999999999999994 58888988 89999999999999999999999999 589999999999999    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++.    +.++|+.. +           
T Consensus       403 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~-----------  463 (517)
T 3r44_A          403 ------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q-----------  463 (517)
T ss_dssp             ------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T-----------
T ss_pred             ------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C-----------
Confidence                  8999999999999996 99999999999999999999999999986543    44555332 2           


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           ...+.++++++++++|+.|+.     ++.|.++++.+...|||+
T Consensus       464 -----~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  502 (517)
T 3r44_A          464 -----NEVSEQQIVEYCGTRLARYKL-----PKKVIFAEAIPRNPTGKI  502 (517)
T ss_dssp             -----TTCCHHHHHHHHHHHSCGGGS-----CSEEEECSCCCBCTTCCB
T ss_pred             -----CCCCHHHHHHHHHHhCCCCCC-----CCEEEEECCCCCCCCcCc
Confidence                 346788999999999999994     478999999999999997

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.3e-55  Score=472.48  Aligned_cols=383  Identities=17%  Similarity=0.191  Sum_probs=301.0

Q ss_pred             HHHHHHhccCC--CceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017           14 NRIAETLCSKA--AMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY   91 (520)
Q Consensus        14 ~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~   91 (520)
                      +.+.+++...+  .++.+|+++........   .......|++++......             .+.....++|+++|+|
T Consensus       200 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~ily  263 (652)
T 1pg4_A          200 KNVDDALKNPNVTSVEHVIVLKRTGSDIDW---QEGRDLWWRDLIEKASPE-------------HQPEAMNAEDPLFILY  263 (652)
T ss_dssp             HHHHHHHTSTTCCSCCEEEEECSSCCCCCC---CBTTEEEHHHHHTTSCSC-------------CCCCCEETTSEEEEEE
T ss_pred             HHHHHHHhcCCcCCCCEEEEEeCCCCcccc---cCCCceeHHHHHhhcCCC-------------CCccccCCCCCEEEEe
Confidence            44555554443  56777777532211100   011235677776532110             1123456899999999


Q ss_pred             cCCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHH
Q 010017           92 TSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLK  162 (520)
Q Consensus        92 TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~  162 (520)
                      ||||||.||||++||++++.... .+...+++.++|++++.+|++|++++.. .+.++..|+++++.       ++..++
T Consensus       264 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~  343 (652)
T 1pg4_A          264 TSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC  343 (652)
T ss_dssp             ECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHH
T ss_pred             ccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHH
Confidence            99999999999999999876653 4456688999999999999999999854 66789999998873       467899


Q ss_pred             HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017          163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  242 (520)
Q Consensus       163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (520)
                      +.|+++++|++.++|+++..+.+......                            .                      
T Consensus       344 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------~----------------------  373 (652)
T 1pg4_A          344 QVVDKHQVNILYTAPTAIRALMAEGDKAI----------------------------E----------------------  373 (652)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHTTGGGGT----------------------------T----------------------
T ss_pred             HHHHHhCCeEEEeCHHHHHHHHhcCcccc----------------------------c----------------------
Confidence            99999999999999999988754210000                            0                      


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---CeeeecccccccccceeccCCC--
Q 010017          243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRPT--  316 (520)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--  316 (520)
                                             ...+..+|.+++||+++++++ +.+.+.+|   +++++.||+||++..++...+.  
T Consensus       374 -----------------------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~  430 (652)
T 1pg4_A          374 -----------------------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAI  430 (652)
T ss_dssp             -----------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTC
T ss_pred             -----------------------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCc
Confidence                                   012334599999999999987 55566787   8999999999998766654432  


Q ss_pred             CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhcccC--CCCccccCceeeeccCCC
Q 010017          317 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHS  392 (520)
Q Consensus       317 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~--~~gw~~TGDlg~~~~~~~  392 (520)
                      ....+++|+|+++++++|+|+ ++++++.|+.|||+|+|  |++++|||++|+.+.+.|.  .+|||+|||+|++++   
T Consensus       431 ~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~---  506 (652)
T 1pg4_A          431 ELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE---  506 (652)
T ss_dssp             CBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT---
T ss_pred             CccCCccccCcCCCeEEEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC---
Confidence            345689999999999999995 58999999999999999  7999999999999988763  379999999999999   


Q ss_pred             CCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHcC
Q 010017          393 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       393 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~  468 (520)
                             ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.++    +.+.|+|+++++          
T Consensus       507 -------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~----------  568 (652)
T 1pg4_A          507 -------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG----------  568 (652)
T ss_dssp             -------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------
T ss_pred             -------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC----------
Confidence                   8999999999999997 899999999999999999999999999754    357899998754          


Q ss_pred             CCcCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          469 IVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       469 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            ...+   .++++++++++|+.|+     .++.|.++++.+...|||+
T Consensus       569 ------~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  610 (652)
T 1pg4_A          569 ------EEPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKI  610 (652)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCB
T ss_pred             ------CCCCHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCCccc
Confidence                  1122   4688889999998888     4578999999999999997

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.9e-56  Score=471.58  Aligned_cols=330  Identities=23%  Similarity=0.327  Sum_probs=208.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~-  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..  .+.++..|+++++. 
T Consensus       187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~  266 (544)
T 3o83_A          187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP  266 (544)
T ss_dssp             CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred             cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence            457899999999999999999999999999999988888899999999999999999999875  56678899999884 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+++.....                                            
T Consensus       267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------  302 (544)
T 3o83_A          267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY--------------------------------------------  302 (544)
T ss_dssp             SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------------------------------
T ss_pred             CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------------------------------
Confidence              6788999999999999999999998876542110                                            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +.+.+.+|+++++.||+||++..++..
T Consensus       303 -------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  351 (544)
T 3o83_A          303 -------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRL  351 (544)
T ss_dssp             -------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCT
T ss_pred             -------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecC
Confidence                                           012233489999999999987 556667899999999999987544332


Q ss_pred             CCCC-CCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~~-~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .... ...+++|+|+ ++++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++|+.+|||+|||+|++++  
T Consensus       352 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~--  428 (544)
T 3o83_A          352 DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP--  428 (544)
T ss_dssp             TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT--
T ss_pred             CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC--
Confidence            2211 2347899996 899999999 6789999999999999999999999999999999998899999999999999  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++...         
T Consensus       429 --------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~---------  490 (544)
T 3o83_A          429 --------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP---------  490 (544)
T ss_dssp             --------TSCEEEEEEEC-------------------------------------------------------------
T ss_pred             --------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCC---------
Confidence                    8999999999999995 9999999999999999999999999998765    35577776532         


Q ss_pred             CCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ..+.+++++++++ .|+.|+.     +++|.++++.+...|||+
T Consensus       491 --------~~~~~~l~~~~~~~~l~~~~~-----P~~i~~v~~lP~t~~GKi  529 (544)
T 3o83_A          491 --------ELKAVVLRRHLMELGIAQYKL-----PDQIKLIESLPLTAVGKV  529 (544)
T ss_dssp             ----------------------------------------------------
T ss_pred             --------CCCHHHHHHHHHhCCCCcccC-----CcEEEEeccCCCCCCCCC
Confidence                    3456778888888 7999984     477899999999999997

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.3e-54  Score=453.97  Aligned_cols=330  Identities=24%  Similarity=0.270  Sum_probs=278.5

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.   
T Consensus       139 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~  218 (511)
T 3e7w_A          139 WVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKD  218 (511)
T ss_dssp             SCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHH
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChh
Confidence            45789999999999999999999999999999988888888999999999999999999988788889999999874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|++.++|+++..++.....                                            
T Consensus       219 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------------------  254 (511)
T 3e7w_A          219 AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF--------------------------------------------  254 (511)
T ss_dssp             HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC--------------------------------------------
T ss_pred             hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------------------------------------------
Confidence               467899999999999999999998876432000                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  311 (520)
                                                     ....+..+|.+++||+++++++ +++.+.+ ++++++.||+||++..++
T Consensus       255 -------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  303 (511)
T 3e7w_A          255 -------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT  303 (511)
T ss_dssp             -------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred             -------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence                                           0012233488999999999987 5666677 899999999999987665


Q ss_pred             ccCC-----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC-CC--ccccCc
Q 010017          312 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD  383 (520)
Q Consensus       312 ~~~~-----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~-~g--w~~TGD  383 (520)
                      ....     ......++|+|.|+++++|+|+ +++++++|+.|||+++||++++|||++|+.|+++|.. +|  ||+|||
T Consensus       304 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGD  382 (511)
T 3e7w_A          304 SVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGD  382 (511)
T ss_dssp             EEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEE
T ss_pred             EEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCC
Confidence            4321     1234567999999999999995 5899999999999999999999999999999999832 23  799999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  459 (520)
                      +|++ +          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++..+ 
T Consensus       383 lg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~-  449 (511)
T 3e7w_A          383 AGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH-  449 (511)
T ss_dssp             EEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC-
T ss_pred             eEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc-
Confidence            9998 5          6999999999999997 9999999999999999999999999997543    57788888653 


Q ss_pred             HHHHHHHcCCCcCCccccC----hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+    .++++++++++|+.|+     .+++|.++++.+...|||+
T Consensus       450 ---------------~~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~v~~lP~t~~GKi  492 (511)
T 3e7w_A          450 ---------------EFEKEFQLTSAIKKELAASLPAYM-----IPRKFIYQDHIQMTANGKI  492 (511)
T ss_dssp             ---------------CCSSHHHHHHHHHHHHHHHSCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             ---------------cccchhhHHHHHHHHHHhhCchhh-----CCeeEEEeccCCCCCCcCc
Confidence                           1112    3678888888888888     4578999999999999997

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=5e-55  Score=458.16  Aligned_cols=330  Identities=21%  Similarity=0.279  Sum_probs=278.0

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCC--CCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~--~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.+..+...+++  .++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus       149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  228 (504)
T 1t5h_X          149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV  228 (504)
T ss_dssp             CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence            4568999999999999999999999999999888877777777  78899999999999999854 56678899999884


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.|+++++|+++++|+++..+.........                                         
T Consensus       229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------------------------------  267 (504)
T 1t5h_X          229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS-----------------------------------------  267 (504)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC-----------------------------------------
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc-----------------------------------------
Confidence               578899999999999999999999888653100000                                         


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ...+..+|.+++||+++++++ +.+.+.+++++++.||+||++. +..
T Consensus       268 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~  314 (504)
T 1t5h_X          268 --------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLY  314 (504)
T ss_dssp             --------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEE
T ss_pred             --------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccc
Confidence                                            011233489999999999987 6666778999999999999832 222


Q ss_pred             cCCCCCCccccccCcCCeEEEEEeCCCC--CcCCCCCccEEEEe-cCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          313 RRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       313 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~--~~~~~g~~GEl~v~-gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      ..  ....+++|.|.++++++|+|++++  +++++|+.|||+++ ||+++.|||++|+.|+++| .+|||+|||+|++++
T Consensus       315 ~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~  391 (504)
T 1t5h_X          315 MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP  391 (504)
T ss_dssp             EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT
T ss_pred             cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC
Confidence            11  234578999999999999996432  89999999999999 9999999999999999999 689999999999998


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHH
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~  465 (520)
                                ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.|+|+++++       
T Consensus       392 ----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-------  453 (504)
T 1t5h_X          392 ----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG-------  453 (504)
T ss_dssp             ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT-------
T ss_pred             ----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC-------
Confidence                      8999999999999996 9999999999999999999999999998653    57899998754       


Q ss_pred             HcCCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                               ...+.+++++++++ +|+.|+     .+++|.++++.+...|||+
T Consensus       454 ---------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  493 (504)
T 1t5h_X          454 ---------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV  493 (504)
T ss_dssp             ---------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             ---------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCE
Confidence                     34577899999998 899998     5578999999999999997

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1e-54  Score=468.95  Aligned_cols=393  Identities=18%  Similarity=0.213  Sum_probs=302.0

Q ss_pred             HHHHHHHhccCCCceEEEEEcCCCC-CCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe
Q 010017           13 FNRIAETLCSKAAMRFIILLWGKKS-SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY   91 (520)
Q Consensus        13 ~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~   91 (520)
                      .+.+.+++..++.++++|+++.... ...   ........|++++......             .+.....++|+++|+|
T Consensus       206 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~ily  269 (663)
T 1ry2_A          206 KRIVDDALRETPGVRHVLVYRKTNNPSVA---FHAPRDLDWATEKKKYKTY-------------YPCTPVDSEDPLFLLY  269 (663)
T ss_dssp             HHHHHHHTTSCTTCCEEEEECSSCCSSCC---CCSSSEEEHHHHHTTSCSC-------------CCCCCEETTSCCEEEE
T ss_pred             HHHHHHHHHhCCCCceEEEEecCCCCccc---cCCCccccHHHHHhhcCCC-------------CCccccCCCCceEEEe
Confidence            3456666666777888888764321 100   0011235677776432110             1123456899999999


Q ss_pred             cCCCCCCchhhhhchHHHHHHHH-HhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-------chhhHH
Q 010017           92 TSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-------AVRNLK  162 (520)
Q Consensus        92 TSGTTG~PKgv~~sh~~~~~~~~-~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-------~~~~~~  162 (520)
                      ||||||.||||++||+++..... .+...+++.++|++++.+|++|+++..+ .+.++..|+++++.       ++..++
T Consensus       270 TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~  349 (663)
T 1ry2_A          270 TSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW  349 (663)
T ss_dssp             ECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHH
T ss_pred             ccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHH
Confidence            99999999999999999876553 4456688999999999999999999854 66789999988774       467899


Q ss_pred             HHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHHH
Q 010017          163 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLW  242 (520)
Q Consensus       163 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (520)
                      +.|+++++|++.++|+++..+.+.....                            ..                      
T Consensus       350 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----------------------------~~----------------------  379 (663)
T 1ry2_A          350 DIIDEHKVTQFYVAPTALRLLKRAGDSY----------------------------IE----------------------  379 (663)
T ss_dssp             HHHHHTTCSEEEECHHHHHHHTTSCTTS----------------------------SS----------------------
T ss_pred             HHHHHcCCCEEEecHHHHHHHHhcCccc----------------------------cc----------------------
Confidence            9999999999999999988774310000                            00                      


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---CeeeecccccccccceeccCC---
Q 010017          243 ARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRP---  315 (520)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~---  315 (520)
                                             ...+..+|.+++||+++++++ +.+.+.+|   +++++.||+||++..++...+   
T Consensus       380 -----------------------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~  436 (663)
T 1ry2_A          380 -----------------------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV  436 (663)
T ss_dssp             -----------------------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC
T ss_pred             -----------------------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC
Confidence                                   012334599999999999988 45555677   899999999999876655433   


Q ss_pred             CCCCccccccCcCCeEEEEEeCCCCCcCCC-CCccEEEEec--CCCCccccCCchhhhcccCC--CCccccCceeeeccC
Q 010017          316 TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPH  390 (520)
Q Consensus       316 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~-g~~GEl~v~g--p~v~~GY~~~~~~t~~~f~~--~gw~~TGDlg~~~~~  390 (520)
                      .....+++|+|+++++++|+|+++++++++ |+.|||+++|  |++++|||++|+.+.+.|..  +|||+|||+|++++ 
T Consensus       437 ~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~-  515 (663)
T 1ry2_A          437 TPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK-  515 (663)
T ss_dssp             CCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT-
T ss_pred             cccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC-
Confidence            234578999999999999999757899988 9999999999  58999999999999888743  79999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|+|.+++    .+.|+|+++++.....   
T Consensus       516 ---------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~---  582 (663)
T 1ry2_A          516 ---------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST---  582 (663)
T ss_dssp             ---------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred             ---------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc---
Confidence                     8999999999999996 8999999999999999999999999998653    5889999876520000   


Q ss_pred             cCCCcCCccc--cChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASE--LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          .. ...  ...++++++++++|+.|+     .++.|.++++.+...|||+
T Consensus       583 ----~~-~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  626 (663)
T 1ry2_A          583 ----AT-DDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI  626 (663)
T ss_dssp             ----------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred             ----cc-chhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCc
Confidence                00 000  124678888888888888     5578999999999999997

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=7.2e-55  Score=459.86  Aligned_cols=389  Identities=23%  Similarity=0.341  Sum_probs=289.7

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCc-eEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCC
Q 010017            3 VALAVENPEFFNRIAETLCSKAAM-RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETI   81 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (520)
                      +++++ +.++.+.+.+.....+.+ +.+++.+.....       ......++++.......             .+....
T Consensus       122 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------------~~~~~~  180 (529)
T 2v7b_A          122 RAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESE-------PRLAPLFEELIDAAAPA-------------AKAAAT  180 (529)
T ss_dssp             SEEEE-EGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSCCC-------------SSCCCC
T ss_pred             eEEEe-chhhhhHHHHHHhhccccCceEEEecccccc-------cccccchhhhhccCCCc-------------ccccCC
Confidence            34444 456666666665545555 556654432110       00123566665422110             111245


Q ss_pred             CCCCEEEEEecCCCCCCchhhhhchHHH-HHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec---
Q 010017           82 GSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  156 (520)
Q Consensus        82 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~-~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~---  156 (520)
                      .++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++.. .+.++..|+++++.   
T Consensus       181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~  260 (529)
T 2v7b_A          181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAER  260 (529)
T ss_dssp             CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSC
T ss_pred             CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCC
Confidence            7899999999999999999999999999 555555556678889999999999999999876 45678899998864   


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.++++++|+++++|+++..++.....     .                                    .   
T Consensus       261 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~------------------------------------~---  296 (529)
T 2v7b_A          261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P------------------------------------A---  296 (529)
T ss_dssp             CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C------------------------------------C---
T ss_pred             CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c------------------------------------c---
Confidence             678899999999999999999998877532000     0                                    0   


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                     .....+|.+++||++++.++ +++.+.+|+++++.||+||++.+.+...
T Consensus       297 -------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  345 (529)
T 2v7b_A          297 -------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNR  345 (529)
T ss_dssp             -------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECC
T ss_pred             -------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccc
Confidence                                           00012488999999999987 5666678999999999999976665554


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      ......+++|+|+++++++|+| ++++++|+|+.|||+++||+++.|||++|+.|++.|. +|||+|||+|++++     
T Consensus       346 ~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~-----  418 (529)
T 2v7b_A          346 AGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP-----  418 (529)
T ss_dssp             TTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT-----
T ss_pred             cCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC-----
Confidence            4445668999999999999999 5689999999999999999999999999999999995 89999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC---CceeEEEEEcChHHHHHHHHHcCCCc
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSIVH  471 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~~~  471 (520)
                           ||+++|.||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+   .+.+.|+|++..+.            
T Consensus       419 -----~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~------------  480 (529)
T 2v7b_A          419 -----NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF------------  480 (529)
T ss_dssp             -----TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC------------
T ss_pred             -----CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC------------
Confidence                 8999999999999996 99999999999999999999999999972   23577888876430            


Q ss_pred             CCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          472 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                       .......++++++++++|+.|+     .+++|.++++.+...+||+
T Consensus       481 -~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  521 (529)
T 2v7b_A          481 -APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKI  521 (529)
T ss_dssp             -CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCB
T ss_pred             -CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccch
Confidence             0001123567777877777776     5578999999999999997

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.2e-55  Score=461.62  Aligned_cols=326  Identities=23%  Similarity=0.334  Sum_probs=201.4

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhh-hhcCeeEEe--
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--  155 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~-~~~G~~~~~--  155 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.. +..|+.++.  
T Consensus       155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~  234 (509)
T 3ivr_A          155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK  234 (509)
T ss_dssp             CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence            35578999999999999999999999999999998888888999999999999999999999876665 445555554  


Q ss_pred             cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          156 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       156 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                      +++..+++.|+++++|++.++|+++..++....                                               
T Consensus       235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----------------------------------------------  267 (509)
T 3ivr_A          235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----------------------------------------------  267 (509)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------
T ss_pred             cCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------
Confidence            378899999999999999999999988865310                                               


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHh-CCeeeecccccccccceeccC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~  314 (520)
                                                    ...+..+|.++.||++  ...+++.+.+ ++++++.||+||++.+++...
T Consensus       268 ------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  315 (509)
T 3ivr_A          268 ------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAP  315 (509)
T ss_dssp             ------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred             ------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence                                          0122334888888887  4457777777 899999999999987766544


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      .. ....++|+|+++++++|+|+ +++++++|+.|||+++||+++.|||++|+.|+++|. +|||+|||+|++++     
T Consensus       316 ~~-~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~-----  387 (509)
T 3ivr_A          316 YR-DRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA-----  387 (509)
T ss_dssp             GG-GSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-----
T ss_pred             cc-cCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-----
Confidence            32 22345999999999999995 489999999999999999999999999999999995 89999999999998     


Q ss_pred             CccccCcEEEEEccc--cceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce----eEEEEEcChHHHHHHHHHcC
Q 010017          395 RSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS  468 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~--~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~  468 (520)
                           ||+++|+||+  ||+||+ +|++|+|.|||++|.+||.|.+|+|+|.+++.    +.++|++.++          
T Consensus       388 -----dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~----------  451 (509)
T 3ivr_A          388 -----DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG----------  451 (509)
T ss_dssp             -----TSCEEEEEEC-----------------------------------------------------------------
T ss_pred             -----CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------
Confidence                 8999999999  999995 99999999999999999999999999987654    5677777654          


Q ss_pred             CCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          469 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                            ...+.+++++++++.|+.|+.     +++|.++++.+...|||+
T Consensus       452 ------~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  490 (509)
T 3ivr_A          452 ------ESIAADALAEFVASLIARYKK-----PKHVVFVEALPKDAKGAI  490 (509)
T ss_dssp             --------------------------------------------------
T ss_pred             ------CCCCHHHHHHHHHhhCcccCC-----CcEEEEecCCCCCCCCCc
Confidence                  345678899999999999984     467899999999999986

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.5e-54  Score=458.00  Aligned_cols=322  Identities=22%  Similarity=0.246  Sum_probs=270.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.   
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  257 (563)
T 1amu_A          178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD  257 (563)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence            34679999999999999999999999999998888877888999999999999999999887777889999999874   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+++.++++++|++.++|+++..+..                                                
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------  289 (563)
T 1amu_A          258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------  289 (563)
T ss_dssp             HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred             hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence               46778899999999999999998765421                                                


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceecc
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                       ..+..+|.+++||+++++++.+.+.. .+++++.||+||++..++..
T Consensus       290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~  335 (563)
T 1amu_A          290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW  335 (563)
T ss_dssp             ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred             ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence                                             01123488999999999987444433 47899999999998765543


Q ss_pred             CCC---CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCC------CCccccCce
Q 010017          314 RPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI  384 (520)
Q Consensus       314 ~~~---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~------~gw~~TGDl  384 (520)
                      ...   .....++|+|+|+++++|+| ++++++++|+.|||+++||++++|||++|+.|+++|..      ++||+|||+
T Consensus       336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl  414 (563)
T 1amu_A          336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  414 (563)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence            322   12456899999999999999 56899999999999999999999999999999999843      469999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~  460 (520)
                      |++++          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++    +.+.|+|++..   
T Consensus       415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~---  480 (563)
T 1amu_A          415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK---  480 (563)
T ss_dssp             EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred             EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC---
Confidence            99999          8999999999999997 999999999999999999999999999764    35778888752   


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ..+.++++++++++|+.|+.     ++.|.++++.+...|||+
T Consensus       481 ---------------~~~~~~l~~~l~~~L~~y~~-----P~~i~~v~~lP~t~~GKi  518 (563)
T 1amu_A          481 ---------------HIPLEQLRQFSSEELPTYMI-----PSYFIQLDKMPLTSNGKI  518 (563)
T ss_dssp             ---------------CCCHHHHHHHHHHHSCGGGS-----CSEEEECSSCCBCTTSSB
T ss_pred             ---------------CCCHHHHHHHHHhhCchhhC-----CcEEEEecccCCCCCcCh
Confidence                           34678999999999999984     478999999999999997

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.2e-53  Score=458.26  Aligned_cols=331  Identities=21%  Similarity=0.334  Sum_probs=282.3

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH--hhhhhhcCeeEEec-
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~--~~~~~~~G~~~~~~-  156 (520)
                      ...++|++||+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..  .+.++..|+++++. 
T Consensus       180 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~  259 (617)
T 3rg2_A          180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA  259 (617)
T ss_dssp             CCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred             CCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence            456899999999999999999999999999999988888889999999999999999999875  56678899999884 


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.++++++|++.++|+++..+.........                                          
T Consensus       260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------  297 (617)
T 3rg2_A          260 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES------------------------------------------  297 (617)
T ss_dssp             SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC------------------------------------------
T ss_pred             CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc------------------------------------------
Confidence              577889999999999999999999887654221100                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceecc
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                     ...+..+|.+++||+++++++ +++.+.+|++++|.||+||++..++..
T Consensus       298 -------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  346 (617)
T 3rg2_A          298 -------------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRL  346 (617)
T ss_dssp             -------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCT
T ss_pred             -------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccC
Confidence                                           012334589999999999987 666677899999999999987554432


Q ss_pred             CCCC-CCccccccCc-CCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          314 RPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       314 ~~~~-~~~~~~G~~~-~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .... ....++|+|+ ++.+++|+| ++++++|+|+.|||+|+||++++||||+|+.|+++|..+|||+|||+|++++  
T Consensus       347 ~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~--  423 (617)
T 3rg2_A          347 DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP--  423 (617)
T ss_dssp             TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred             CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC--
Confidence            2111 2245789997 788999999 5689999999999999999999999999999999999999999999999998  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||.++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++    +.+.+++++..          
T Consensus       424 --------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~----------  484 (617)
T 3rg2_A          424 --------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE----------  484 (617)
T ss_dssp             --------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS----------
T ss_pred             --------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC----------
Confidence                    8999999999999996 999999999999999999999999998754    35678888752          


Q ss_pred             CCCcCCccccChHHHHHHHHH-HHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ..+.+++++++++ .|+.|+.     +..|.++++.+...|||+
T Consensus       485 --------~~~~~~l~~~l~~~~lp~~~v-----P~~~~~v~~lP~t~~GKi  523 (617)
T 3rg2_A          485 --------PLRAVQVRRFLREQGIAEFKL-----PDRVECVDSLPLTAVGKV  523 (617)
T ss_dssp             --------CCCHHHHHHHHHTTTCCGGGS-----CSEEEECSCCCBCTTSSB
T ss_pred             --------CCCHHHHHHHHHhCCCccccC-----CcEEEEecccCCCCCCCC
Confidence                    3567889999988 6888884     478999999999999997

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=7.8e-55  Score=463.25  Aligned_cols=328  Identities=22%  Similarity=0.267  Sum_probs=201.0

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|+++|+|||||||.||||++||+++.+.... ...+++.++|++++++|++|..+....+.++..|+++++.   
T Consensus       210 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  288 (570)
T 4gr5_A          210 GVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQ  288 (570)
T ss_dssp             CCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSS
T ss_pred             CCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCc
Confidence            457899999999999999999999999999765544 4456788999999999999877766677788899988874   


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++.++|+++..+.+...                                              
T Consensus       289 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------------------------------  322 (570)
T 4gr5_A          289 NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP----------------------------------------------  322 (570)
T ss_dssp             SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG----------------------------------------------
T ss_pred             cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch----------------------------------------------
Confidence              56789999999999999999999988754210                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ..+..+|.+++||++++... +++.+.+ +++++++||+||++++.+.
T Consensus       323 --------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~  370 (570)
T 4gr5_A          323 --------------------------------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTH  370 (570)
T ss_dssp             --------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred             --------------------------------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeee
Confidence                                            12233489999999999765 6677766 8999999999999876654


Q ss_pred             cCCC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC--------Cccc
Q 010017          313 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWLN  380 (520)
Q Consensus       313 ~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~--------gw~~  380 (520)
                      ....    .....++|+|+++++++|+| ++++++++|+.|||+|+||++++|||++|+.|+++|..+        |||+
T Consensus       371 ~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~  449 (570)
T 4gr5_A          371 HAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYR  449 (570)
T ss_dssp             EECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEE
T ss_pred             eeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEe
Confidence            3321    23346799999999999999 458999999999999999999999999999999998543        7999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcC
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  456 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~  456 (520)
                      |||+|++++          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.
T Consensus       450 TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  518 (570)
T 4gr5_A          450 TGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAE  518 (570)
T ss_dssp             EEEEEEECT----------TSCEEEEEC----------------------------------------------------
T ss_pred             CCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEec
Confidence            999999999          8999999999999997 9999999999999999999999999998654    567888775


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          457 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .+.               ...+.++++++++++|+.|+.     ++.|.++++.+...+||+
T Consensus       519 ~~~---------------~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~t~~GKi  560 (570)
T 4gr5_A          519 RAD---------------APPDAAELRRHVAEALPAYMV-----PVECVPVDELPRTPNGKL  560 (570)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CCC---------------CCcCHHHHHHHHHhhCccccC-----CcEEEEcccCCCCCCcCc
Confidence            431               235678999999999999984     477889999999999987

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2e-54  Score=454.58  Aligned_cols=335  Identities=22%  Similarity=0.239  Sum_probs=275.8

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            345789999999999999999999999999999888888889999999999999999999988778889999999874  


Q ss_pred             ----chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          157 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       157 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                          ++..+++.++++++|++.++|+++..++.....                                           
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------------------  255 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF-------------------------------------------  255 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC-------------------------------------------
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc-------------------------------------------
Confidence                467899999999999999999998776431000                                           


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccce
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  310 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~  310 (520)
                                                      ....+..+|.+++||+++++++ +++.+.+ ++++++.||+||++..+
T Consensus       256 --------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  303 (512)
T 3fce_A          256 --------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV  303 (512)
T ss_dssp             --------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred             --------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence                                            0012334589999999999987 5666777 89999999999998766


Q ss_pred             eccCCCC-----CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc---CCCCccccC
Q 010017          311 AARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTG  382 (520)
Q Consensus       311 ~~~~~~~-----~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f---~~~gw~~TG  382 (520)
                      +......     ....++|+|.++++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++|   +.+|||+||
T Consensus       304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG  382 (512)
T 3fce_A          304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG  382 (512)
T ss_dssp             EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred             eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence            5433221     2456899999999999999 568999999999999999999999999999999998   456799999


Q ss_pred             ceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChH
Q 010017          383 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE  458 (520)
Q Consensus       383 Dlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~  458 (520)
                      |+|++ +          ||+++|.||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++    +.+.|+|+++.+
T Consensus       383 Dlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~  450 (512)
T 3fce_A          383 DAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH  450 (512)
T ss_dssp             EEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred             ceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence            99998 6          7999999999999997 999999999999999999999999998754    357788888643


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .            ........++++++++++|+.|+     .++.|.++++.+...+||+
T Consensus       451 ~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi  493 (512)
T 3fce_A          451 S------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKV  493 (512)
T ss_dssp             C------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSB
T ss_pred             c------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcCh
Confidence            0            00000113467777887888887     4578999999999999997

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.5e-54  Score=486.80  Aligned_cols=333  Identities=29%  Similarity=0.466  Sum_probs=211.4

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhh----hcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeE
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL  153 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~  153 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+.....    .+++.++|++++++|++|.+++.. .+.++..|+++
T Consensus       220 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~  299 (979)
T 3tsy_A          220 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI  299 (979)
T ss_dssp             SCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred             CCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence            3567899999999999999999999999999887766543    456788999999999999999865 45678899998


Q ss_pred             Eec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          154 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       154 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                      ++.   ++..+++.|+++++|++.++|+++..+.+.....                                        
T Consensus       300 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  339 (979)
T 3tsy_A          300 LIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----------------------------------------  339 (979)
T ss_dssp             EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------------------------
T ss_pred             EEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------------------------
Confidence            884   5788999999999999999999998775421100                                        


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  308 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~  308 (520)
                                                         ...+..+|.+++||+++++++ +.+.+.+ ++++++.||+||++.
T Consensus       340 -----------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~  384 (979)
T 3tsy_A          340 -----------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP  384 (979)
T ss_dssp             -----------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred             -----------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence                                               012334589999999999987 5555667 899999999999987


Q ss_pred             ceeccC-----CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCc
Q 010017          309 VIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  383 (520)
Q Consensus       309 ~~~~~~-----~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGD  383 (520)
                      +++...     +.....+++|+|+++++++|+|+++++++++|+.|||+|+||++++|||++|+.|++.|+.+|||+|||
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGD  464 (979)
T 3tsy_A          385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGD  464 (979)
T ss_dssp             EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred             HHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCC
Confidence            665431     223456889999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHH
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  459 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~  459 (520)
                      +|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.++ 
T Consensus       465 l~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~-  532 (979)
T 3tsy_A          465 IGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD-  532 (979)
T ss_dssp             EEEECT----------TSCEEEEEESCC----------------------------------------------------
T ss_pred             EEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC-
Confidence            999999          8999999999999997 9999999999999999999999999997654    46688887654 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          460 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ...+.++++++++++|+.|+     .+++|.++++.+...|||+
T Consensus       533 ---------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi  571 (979)
T 3tsy_A          533 ---------------SELSEDDVKQFVSKQVVFYK-----RINKVFFTESIPKAPSGKI  571 (979)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ---------------CCCCHHHHHHHHHHhccccc-----CCeEEEEeCCcCcCCCCCe
Confidence                           34567889999999999999     4567899999999999986

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.4e-53  Score=449.22  Aligned_cols=338  Identities=20%  Similarity=0.218  Sum_probs=269.2

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh--cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+........  ++..+++++++.+|++|.++....+.++..|+++++.
T Consensus       140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~  219 (521)
T 3l8c_A          140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFAL  219 (521)
T ss_dssp             SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred             CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEc
Confidence            34578999999999999999999999999998877666544  6778899999999999999887777788999998874


Q ss_pred             ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                            ++..+++.+.++++|++.++|+++..+......                                         
T Consensus       220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------------  258 (521)
T 3l8c_A          220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF-----------------------------------------  258 (521)
T ss_dssp             CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC-----------------------------------------
T ss_pred             CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc-----------------------------------------
Confidence                  567889999999999999999998766431000                                         


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeeccccccccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  308 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~  308 (520)
                                                        ....+..+|.+++||++++.++ +++.+.+ ++++++.||+||++.
T Consensus       259 ----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  304 (521)
T 3l8c_A          259 ----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV  304 (521)
T ss_dssp             ----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred             ----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence                                              0012334589999999999887 6667777 899999999999987


Q ss_pred             ceeccCCC-----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc---CCCCccc
Q 010017          309 VIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLN  380 (520)
Q Consensus       309 ~~~~~~~~-----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f---~~~gw~~  380 (520)
                      .++.....     ....+++|+|+|+++++|+| ++++++++|+.|||+++||+++.|||++|+.|+++|   +.+|||+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~  383 (521)
T 3l8c_A          305 ALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYH  383 (521)
T ss_dssp             CSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEE
T ss_pred             hhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeee
Confidence            66543221     12346899999999999999 468999999999999999999999999999999998   5678999


Q ss_pred             cCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC-----ceeEEEEEc
Q 010017          381 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIVP  455 (520)
Q Consensus       381 TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-----~~~~a~vv~  455 (520)
                      |||+|++++          ||+++|.||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.++     +.+.|+|++
T Consensus       384 TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~  452 (521)
T 3l8c_A          384 TGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVV  452 (521)
T ss_dssp             EEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEE
T ss_pred             CCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEe
Confidence            999999999          8999999999999997 899999999999999999999999998753     357789998


Q ss_pred             ChHHHHHHHHHcCCCcCCc-cccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          456 DKEEVLMAAKRLSIVHADA-SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      .++..          .... .....++++++++++|+.|+     .++.|.++++.+...+||+
T Consensus       453 ~~~~~----------~~~~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  501 (521)
T 3l8c_A          453 KDGVK----------ERFDRELELTKAIKASVKDHMMSYM-----MPSKFLYRDSLPLTPNGKI  501 (521)
T ss_dssp             CTTSG----------GGCSSHHHHHHHHHHHSGGGSCGGG-----SCSEEEECSSCCBCTTSSB
T ss_pred             cCccc----------cccccchhhHHHHHHHHHhhCcccc-----CCeEEEEecccCCCCCcCc
Confidence            75410          0000 00124677888888888887     4478999999999999997

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.5e-53  Score=445.19  Aligned_cols=320  Identities=24%  Similarity=0.319  Sum_probs=270.2

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec--
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~--  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  237 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK  237 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence            345789999999999999999999999999999988888889999999999999999999998888889999999884  


Q ss_pred             -chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHH
Q 010017          157 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  235 (520)
Q Consensus       157 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (520)
                       ++..+++.|+++++|++.++|+++..+......                                              
T Consensus       238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  271 (501)
T 3ipl_A          238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------------------------  271 (501)
T ss_dssp             CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence             688999999999999999999999887543100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCC
Q 010017          236 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  315 (520)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  315 (520)
                                                     .. ..+|.+++||+++++++.+.+..+++++++.||+||++..++...+
T Consensus       272 -------------------------------~~-~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  319 (501)
T 3ipl_A          272 -------------------------------EP-YNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP  319 (501)
T ss_dssp             -------------------------------SC-TTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred             -------------------------------Cc-CcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence                                           00 0238899999999999866555679999999999999875554332


Q ss_pred             C--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCC
Q 010017          316 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  393 (520)
Q Consensus       316 ~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~  393 (520)
                      .  ....+++|+|+++++++|+|++      +|+.|||+++|+++++|||++|+.|++ | .+|||+|||+|++++    
T Consensus       320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~----  387 (501)
T 3ipl_A          320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH----  387 (501)
T ss_dssp             HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred             cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence            2  1345789999999999999964      467899999999999999999999988 6 589999999999998    


Q ss_pred             CCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCC
Q 010017          394 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  469 (520)
Q Consensus       394 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  469 (520)
                            ||+++|+||+||+||. +|++|+|.|||++|.+||.|.+|+|++.+++    .+.+++++.             
T Consensus       388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~-------------  447 (501)
T 3ipl_A          388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE-------------  447 (501)
T ss_dssp             ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred             ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence                  8999999999999995 9999999999999999999999999998654    355777764             


Q ss_pred             CcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          470 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                           ...+.++++++++++|+.|+.     +++|.++++.+...|||+
T Consensus       448 -----~~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  486 (501)
T 3ipl_A          448 -----SDISKAQLIAYLSKHLAKYKV-----PKHFEKVDTLPYTSTGKL  486 (501)
T ss_dssp             -----SCCCHHHHHHHHHHHSCGGGS-----CSEEEECSSCC-------
T ss_pred             -----CCCCHHHHHHHHHhhCccccC-----CCEEEEecccCCCCCCCE
Confidence                 345788999999999999984     477999999999999997

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.7e-53  Score=455.59  Aligned_cols=322  Identities=18%  Similarity=0.176  Sum_probs=265.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|++||+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|.++....+.++..|+++++.   
T Consensus       160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  238 (620)
T 4dg8_A          160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG  238 (620)
T ss_dssp             CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred             CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence            346899999999999999999999999999876654 4567888999999999999999988888889999998873   


Q ss_pred             --chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhH
Q 010017          157 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  234 (520)
Q Consensus       157 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (520)
                        ++..+++.|+++++|++..+|+++..+....                                               
T Consensus       239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----------------------------------------------  271 (620)
T 4dg8_A          239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----------------------------------------------  271 (620)
T ss_dssp             SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred             cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence              5788999999999999999999998775410                                               


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh-CCeeeecccccccccceec
Q 010017          235 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  312 (520)
                                                     ...+..+|.+++||++++... +++.+.+ +++++|.||+||++..++.
T Consensus       272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  320 (620)
T 4dg8_A          272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC  320 (620)
T ss_dssp             -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred             -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence                                           012233489999999999664 6676665 8999999999999876654


Q ss_pred             cCCC----CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCC-------Ccccc
Q 010017          313 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT  381 (520)
Q Consensus       313 ~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~-------gw~~T  381 (520)
                      ....    .....++|+|+++++++|+|+++..++|+|+.|||+|+||++++||||+|+.|+++|..+       +||+|
T Consensus       321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT  400 (620)
T 4dg8_A          321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT  400 (620)
T ss_dssp             EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred             EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence            3221    134568999999999999997655558999999999999999999999999999999653       79999


Q ss_pred             CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCce---eEEEEEcChH
Q 010017          382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR---PGAIIVPDKE  458 (520)
Q Consensus       382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~---~~a~vv~~~~  458 (520)
                      ||+|++++          ||+++|+||+||+||+ +|+||+|.|||++|.+||.|.+|+|++.+++.   +.++++... 
T Consensus       401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~-  468 (620)
T 4dg8_A          401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA-  468 (620)
T ss_dssp             EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-
T ss_pred             CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-
Confidence            99999999          8999999999999997 99999999999999999999999999986553   334444321 


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                           ++++++++++|+.|+.     ++.|.++++.+...|||+
T Consensus       469 ---------------------~~~~~~l~~~Lp~y~~-----P~~~~~v~~lP~t~~GKi  502 (620)
T 4dg8_A          469 ---------------------DASPQALLRQLPTWQR-----PHACVRVEALPLTAHGKL  502 (620)
T ss_dssp             ---------------------TCCCHHHHHHSCGGGS-----CSEEEECSSCCCC----C
T ss_pred             ---------------------HHHHHHHHHhChhhcC-----CcEEEEECcCCCCcccCH
Confidence                                 1234567788999984     478999999999999997

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.5e-51  Score=438.84  Aligned_cols=336  Identities=21%  Similarity=0.320  Sum_probs=272.4

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec-
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~-  156 (520)
                      ....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++. 
T Consensus       162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~  241 (590)
T 3kxw_A          162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS  241 (590)
T ss_dssp             CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred             CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence            3567899999999999999999999999999999988888899999999999999999999887 66778899998874 


Q ss_pred             ------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCC
Q 010017          157 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  230 (520)
Q Consensus       157 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (520)
                            ++..+++.|+++++|++.++|.++..+.+.+.....                                      
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--------------------------------------  283 (590)
T 3kxw_A          242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK--------------------------------------  283 (590)
T ss_dssp             HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG--------------------------------------
T ss_pred             HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc--------------------------------------
Confidence                  467889999999999999999998877553211000                                      


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh------CCeeeecccc
Q 010017          231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYGL  303 (520)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~------g~~v~~~YG~  303 (520)
                                                        ....+..+|.+++||+++++++ +++.+.+      +.++++.||+
T Consensus       284 ----------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~  329 (590)
T 3kxw_A          284 ----------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGL  329 (590)
T ss_dssp             ----------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEEC
T ss_pred             ----------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccc
Confidence                                              0012334589999999999887 5666666      2469999999


Q ss_pred             cccccceeccCCC---------------------------CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecC
Q 010017          304 TESSPVIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS  356 (520)
Q Consensus       304 TE~~~~~~~~~~~---------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp  356 (520)
                      ||++..++...+.                           ....+++|+|+++  ++|+|+++++++++|+.|||+|+||
T Consensus       330 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~  407 (590)
T 3kxw_A          330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSN  407 (590)
T ss_dssp             GGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEEST
T ss_pred             ccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCC
Confidence            9998876653221                           1234688999988  8889988899999999999999999


Q ss_pred             CCCccccCCchhhhcccCC------CC--ccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHH
Q 010017          357 QVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  428 (520)
Q Consensus       357 ~v~~GY~~~~~~t~~~f~~------~g--w~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~  428 (520)
                      ++++|||++|+.|+++|..      +|  ||+|||+|+++           ||.++|+||+||+||+ +|+||+|.|||+
T Consensus       408 ~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~  475 (590)
T 3kxw_A          408 SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQDIEF  475 (590)
T ss_dssp             TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHHHHH
T ss_pred             cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHHHHH
Confidence            9999999999999999964      24  99999999988           4999999999999997 999999999999


Q ss_pred             HH-hcCcccc--eEEEEeCCC---ceeEEEEEcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHH-HhccCCCcc
Q 010017          429 AA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQI  501 (520)
Q Consensus       429 ~l-~~~p~V~--~~~Vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i  501 (520)
                      +| ..||.|.  +|+|++.++   +.+.+++++..+.              ....+.+++.+++++.|.. ++.+.    
T Consensus       476 ~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~~~p~----  537 (590)
T 3kxw_A          476 SLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENHQLEV----  537 (590)
T ss_dssp             HHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred             HHHhcCccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHcCCce----
Confidence            99 7899998  899998654   3566777765420              0234567899999999996 55431    


Q ss_pred             ccEEEe--cCCCCcCCCcc
Q 010017          502 GPIHVV--DEPFTVNFLCL  518 (520)
Q Consensus       502 ~~~~~~--~~~~~~~~g~l  518 (520)
                      ..+.++  ++.+...+||+
T Consensus       538 ~~i~~v~~~~lP~t~sGKi  556 (590)
T 3kxw_A          538 HTIVLIPLKAMPHTTSGKI  556 (590)
T ss_dssp             CEEEEEETTCSCCCSCHHH
T ss_pred             eEEEEECCCccCcCCCcHH
Confidence            134555  68888899986

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.1e-50  Score=465.99  Aligned_cols=325  Identities=22%  Similarity=0.273  Sum_probs=277.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec---
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  156 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~---  156 (520)
                      ...++|++||+|||||||.||||++||+++.+. ......+++.++|+++++.|++|..+....+.++..|+++++.   
T Consensus       603 ~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~  681 (1304)
T 2vsq_A          603 AIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEH  681 (1304)
T ss_dssp             CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGG
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChh
Confidence            457899999999999999999999999999865 4445567888999999999999988887778889999999884   


Q ss_pred             ---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          157 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       157 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                         ++..+.+.|.++++|++..+|+++..+.....                                             
T Consensus       682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---------------------------------------------  716 (1304)
T 2vsq_A          682 TLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---------------------------------------------  716 (1304)
T ss_dssp             GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---------------------------------------------
T ss_pred             hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---------------------------------------------
Confidence               46789999999999999999999987754200                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC-Ceeeeccccccccccee
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIA  311 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~  311 (520)
                                                       ..+..+|.+++||++++... +++.+.++ ++++|+||+||++..++
T Consensus       717 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  763 (1304)
T 2vsq_A          717 ---------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT  763 (1304)
T ss_dssp             ---------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred             ---------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence                                             00112388999999999775 67777764 78999999999987766


Q ss_pred             ccCC----CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccC------CCCcccc
Q 010017          312 ARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------EDGWLNT  381 (520)
Q Consensus       312 ~~~~----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~------~~gw~~T  381 (520)
                      ....    ......++|+|++|++++|+|+ .++++|.|+.|||+|+|+++++||+|+|++|+++|.      .++||||
T Consensus       764 ~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrT  842 (1304)
T 2vsq_A          764 AHVVHDLPDSISSLPIGKPISNASVYILNE-QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT  842 (1304)
T ss_dssp             EEECCCCCSSCSSCCCBEECTTEEEEEECT-TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEE
T ss_pred             eeeccCccccCCCCCCceeeCCCEEEEECC-CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEec
Confidence            5432    1234468999999999999994 589999999999999999999999999999999984      2469999


Q ss_pred             CceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcCh
Q 010017          382 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK  457 (520)
Q Consensus       382 GDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~  457 (520)
                      ||+|++++          ||.++|+||+||+||+ +|+||+|.|||++|.+||+|.+|+|++.++    ..++|++++..
T Consensus       843 GDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~  911 (1304)
T 2vsq_A          843 GDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT  911 (1304)
T ss_dssp             EEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred             CCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC
Confidence            99999999          8999999999999997 999999999999999999999999998653    46889998752


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                        ..+.+++++++++.|+.|+.|     ..|.++++.+...|||+
T Consensus       912 ------------------~~~~~~l~~~l~~~Lp~ymvP-----~~~~~l~~lP~t~~GKi  949 (1304)
T 2vsq_A          912 ------------------QLSAEDVKAHLKKQLPAYMVP-----QTFTFLDELPLTTNGKV  949 (1304)
T ss_dssp             ------------------SSCHHHHHHHHHHHSCGGGSC-----SEEEEESCCCCCSSCSS
T ss_pred             ------------------CCCHHHHHHHHHHhChHhhhc-----cEEEEecccCCCCCccc
Confidence                              356789999999999999955     77999999999999997

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.7e-51  Score=432.71  Aligned_cols=339  Identities=17%  Similarity=0.153  Sum_probs=196.4

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh--------cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--------VPAENGDKFLSMLPPWHVYERACGYFIFSRGI  151 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--------~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~  151 (520)
                      ...++++++|+|||||||.||||++||+++.+....+...        +.+...+++++.+|++|.++....+.++..|+
T Consensus       171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  250 (562)
T 3ite_A          171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL  250 (562)
T ss_dssp             CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred             CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence            3467899999999999999999999999998776654432        44678899999999999888877778888999


Q ss_pred             eEEecc----hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccC
Q 010017          152 ELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  227 (520)
Q Consensus       152 ~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (520)
                      ++++..    +..+.+.++++++|++.++|+++..+...                                         
T Consensus       251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----------------------------------------  289 (562)
T 3ite_A          251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----------------------------------------  289 (562)
T ss_dssp             EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------------------------------
T ss_pred             EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------------------------------
Confidence            988753    46778999999999999999977544110                                         


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHH-HHHHhCCeeeeccccccc
Q 010017          228 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTES  306 (520)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~  306 (520)
                                                            ...+..+|.+++||+++++++.+ +.+.+++++++.||+||+
T Consensus       290 --------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~  331 (562)
T 3ite_A          290 --------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV  331 (562)
T ss_dssp             --------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGG
T ss_pred             --------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchh
Confidence                                                  01223348999999999998854 445568999999999999


Q ss_pred             ccceeccCC-CCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCC--ccccCc
Q 010017          307 SPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGD  383 (520)
Q Consensus       307 ~~~~~~~~~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~g--w~~TGD  383 (520)
                      +..++.... .....+++|+|+++++++|+|+++++++++|+.|||+++||++++|||++|+.|+..+. +|  ||+|||
T Consensus       332 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD  410 (562)
T 3ite_A          332 TIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD  410 (562)
T ss_dssp             CSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred             eeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence            876655432 23456789999999999999988899999999999999999999999999999987763 45  999999


Q ss_pred             eeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcC-cccceEEEEeCCCcee-----EEEEEcCh
Q 010017          384 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRP-----GAIIVPDK  457 (520)
Q Consensus       384 lg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~-p~V~~~~Vvg~~~~~~-----~a~vv~~~  457 (520)
                      +|++++          ||+++|+||+||+||+ +|+||+|.|||++|.+| |.+.+++|++.+++..     .++++...
T Consensus       411 lg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  479 (562)
T 3ite_A          411 IVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG  479 (562)
T ss_dssp             EEEECT----------TSCEEEEEEC------------------------------------------------------
T ss_pred             EEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence            999999          8999999999999996 99999999999999997 8889999998766532     23333322


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCc-CCCcc
Q 010017          458 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCL  518 (520)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~-~~g~l  518 (520)
                      .........    .........++++++++++|+.|+.     ++.|.++++.+.. .+||+
T Consensus       480 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~L~~y~~-----P~~i~~v~~lP~t~~~GKi  532 (562)
T 3ite_A          480 AAVRGELRW----INENYKEINNSLRQACEQTLPAYMV-----PDFIIPISFIPLRDTSAKT  532 (562)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ccccccccc----cccchhhHHHHHHHHHHhhCCcccC-----CcEEEEeccCCCCCCCCcc
Confidence            211100000    0011122356899999999999994     4778999999855 88986

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2.3e-49  Score=395.88  Aligned_cols=299  Identities=14%  Similarity=0.112  Sum_probs=247.8

Q ss_pred             CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec-chhhH
Q 010017           83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNL  161 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~-~~~~~  161 (520)
                      .+|++||+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|++++...+.++..|+++++. .....
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~  115 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP  115 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence            47899999999999999999999999999999888899999999999999999999998888888888888774 33456


Q ss_pred             HHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHHHH
Q 010017          162 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  241 (520)
Q Consensus       162 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (520)
                      ++.|+++++|++.++|+++..+++....                                                    
T Consensus       116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~----------------------------------------------------  143 (358)
T 4gs5_A          116 LAGLDHADFDFVAMVPMQLQSILENSAT----------------------------------------------------  143 (358)
T ss_dssp             TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred             HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence            7789999999999999999887542100                                                    


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCCCCcc
Q 010017          242 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG  321 (520)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~  321 (520)
                                              ...+..+|.+++||+++++++.+.+..+|+++++.||+||++..++.........+
T Consensus       144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g  199 (358)
T 4gs5_A          144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS  199 (358)
T ss_dssp             ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred             ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence                                    01122348899999999999877777789999999999999988777766666678


Q ss_pred             ccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCc
Q 010017          322 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG  401 (520)
Q Consensus       322 ~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G  401 (520)
                      .+|.+.|++++.+.           +.|||+++|+..                .+|||+|||+|++++          ||
T Consensus       200 ~~~~~~pgv~~~~~-----------~~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g  242 (358)
T 4gs5_A          200 ELYVFLPGIQYGVD-----------ERGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA  242 (358)
T ss_dssp             SCEEECTTCEEEEC-----------TTSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred             eeeccCCCeEEEec-----------CcCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence            89999999888763           358999987532                478999999999998          77


Q ss_pred             EEEEEccccceEEeCCceeeccHHHHHHHh---cCcccceEEEE-eCCCc----eeEEEEEcChHHHHHHHHHcCCCcCC
Q 010017          402 VLVLEGRAKDTIVLSTGENVEPLELEEAAL---RSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  473 (520)
Q Consensus       402 ~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~---~~p~V~~~~Vv-g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  473 (520)
                       ++|+||+||+||+ +|+||+|.|||++|.   +||.|.+|+|+ +.+++    .+.|+|++...               
T Consensus       243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~---------------  305 (358)
T 4gs5_A          243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP---------------  305 (358)
T ss_dssp             -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---------------
T ss_pred             -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---------------
Confidence             6677999999996 999999999998774   68999999887 45544    45677766532               


Q ss_pred             ccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          474 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       474 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                        ....++++++++++|+.|+     .+++|.++++.+...|||+
T Consensus       306 --~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  343 (358)
T 4gs5_A          306 --EALTERLTAEIRSRVSTYE-----NPKHIYFAKAFAKTQTDKI  343 (358)
T ss_dssp             --HHHHHHHHHHHHHHSCGGG-----SCSCEEEESSCCBCTTSCB
T ss_pred             --CcCHHHHHHHHHhhCCCCC-----CceEEEEECCcCCCCCCCh
Confidence              2345789999999999998     4578999999999999997

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2.7e-47  Score=392.31  Aligned_cols=330  Identities=15%  Similarity=0.101  Sum_probs=252.2

Q ss_pred             CCCC-CCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcChhhHHHHH-HhhhhhhcCeeEE
Q 010017           80 TIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELM  154 (520)
Q Consensus        80 ~~~~-~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl~h~~g~~-~~~~~~~~G~~~~  154 (520)
                      ..++ +|+++|+|||||||.||||++||+++.+....+.   ..+++.++|++++++|+.|..+.. ..+.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            4456 8999999999999999999999999977665543   345889999999999987665554 4566788999988


Q ss_pred             ec---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCc
Q 010017          155 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  231 (520)
Q Consensus       155 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (520)
                      +.   ++..+++.|+++++|+++++|+++..+++........                                      
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------------------------------  202 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID--------------------------------------  202 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC--------------------------------------
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC--------------------------------------
Confidence            74   5788999999999999999999999887653321100                                      


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-
Q 010017          232 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-  309 (520)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~-  309 (520)
                                                         ..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++. 
T Consensus       203 -----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~  247 (436)
T 3qov_A          203 -----------------------------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPG  247 (436)
T ss_dssp             -----------------------------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEE
T ss_pred             -----------------------------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCe
Confidence                                               01233489999999999987 55566679999999999999544 


Q ss_pred             eeccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeecc
Q 010017          310 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  389 (520)
Q Consensus       310 ~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~  389 (520)
                      +.....   .....|.+.++++++|+|+++++++++|+.|||+++|+            +++.| .++||+|||+|++++
T Consensus       248 ~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~  311 (436)
T 3qov_A          248 VAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTRDLTRILP  311 (436)
T ss_dssp             EEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEEEEECEEC
T ss_pred             eEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcCCEEEEcC
Confidence            333221   12336778889999999988899999999999999973            34455 579999999999999


Q ss_pred             CCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCC----ceeEEEEEcChHHHHHHHH
Q 010017          390 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK  465 (520)
Q Consensus       390 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~  465 (520)
                      +.|.|++... ..++|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++    +.+.++|+++ +.      
T Consensus       312 ~gc~cG~~~~-~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~------  382 (436)
T 3qov_A          312 GKCPCGRTHL-RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL------  382 (436)
T ss_dssp             SCCTTCCCSC-EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT------
T ss_pred             CCCCCCCCcc-ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc------
Confidence            7775442110 125899999999997 899999999999999999999999998754    5788999987 41      


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017          466 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                            ......+.+++++++++.|+.+..    ....|.+++  +.+... ||+
T Consensus       383 ------~~~~~~~~~~l~~~l~~~l~~~~~----~p~~i~~v~~~~lP~t~-GKi  426 (436)
T 3qov_A          383 ------STDNYIELEKIRRDIIRQLKDEIL----VTPKVKLVKKGSLPQSE-GKA  426 (436)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHHHHS----SCCEEEEECTTCCC-------
T ss_pred             ------cccchhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCcccCcC-Ccc
Confidence                  000011257899999999999942    234788888  777777 886

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=4.4e-46  Score=383.98  Aligned_cols=323  Identities=18%  Similarity=0.173  Sum_probs=253.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..+++|+++++|||||||.||||++||+++......+.   ..+++.++|++++.+|+ +|..++...+.++..|++++.
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            45679999999999999999999999999877554433   35788999999999998 677777767778889999887


Q ss_pred             c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          156 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       156 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .   ++..+++.|+++++|+++++|+++..|++.......+                                       
T Consensus       168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---------------------------------------  208 (443)
T 2y4o_A          168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD---------------------------------------  208 (443)
T ss_dssp             CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC---------------------------------------
Confidence            4   6788999999999999999999998887643221000                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-e
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-I  310 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~-~  310 (520)
                                                        ..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++. +
T Consensus       209 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~  254 (443)
T 2y4o_A          209 ----------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGV  254 (443)
T ss_dssp             ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEE
T ss_pred             ----------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeE
Confidence                                              01223489999999999987 55556789999999999997433 3


Q ss_pred             eccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      +......  ....+.+.+++.++|+|+++++++++|+.|||+++|            .|+++| .++||+|||+|++++ 
T Consensus       255 ~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~------------~t~~~~-p~~~y~TGDl~~~~~-  318 (443)
T 2y4o_A          255 ACECVET--KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS------------LTKEAM-PVIRYRTRDLTALLP-  318 (443)
T ss_dssp             EEECTTT--CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSS-CCSSEEEEEEECEEC-
T ss_pred             EeccCCC--CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC------------CCcccC-hhheeecCCEEEEcC-
Confidence            3322211  112556778999999998889999999999999996            344556 479999999999998 


Q ss_pred             CCCCCccccC-cEE-----EEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC----CceeEEEEEcCh--H
Q 010017          391 HSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDK--E  458 (520)
Q Consensus       391 ~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~--~  458 (520)
                               + |++     +|+||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+    .+.+.++|++.+  +
T Consensus       319 ---------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~  388 (443)
T 2y4o_A          319 ---------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAA  388 (443)
T ss_dssp             ---------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHH
T ss_pred             ---------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccc
Confidence                     5 765     899999999997 89999999999999999999999988853    346778888875  2


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEe--cCCCCcCCCcc
Q 010017          459 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCL  518 (520)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~~~~~g~l  518 (520)
                      .             .....+.+++++++++.|+.+..    .+..|.++  ++.+...+||+
T Consensus       389 ~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~GKi  433 (443)
T 2y4o_A          389 A-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATGKA  433 (443)
T ss_dssp             T-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTSCC
T ss_pred             c-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCCcc
Confidence            0             00123457899999999998852    12457777  48888899986

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=5.7e-46  Score=382.46  Aligned_cols=323  Identities=20%  Similarity=0.183  Sum_probs=252.7

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhh---hhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..+++|+++|+|||||||.||||++||+++......+.   ..+++.++|++++.+|+ +|..++...+.++..|++++.
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            45679999999999999999999999999877654433   35788899999999998 788887777778889999886


Q ss_pred             c---chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          156 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       156 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                      .   ++..+++.|++++||+++++|+++..+++.......+                                       
T Consensus       166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---------------------------------------  206 (437)
T 2y27_A          166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD---------------------------------------  206 (437)
T ss_dssp             CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred             CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC---------------------------------------
Confidence            4   5788999999999999999999999887643221000                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccc-e
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-I  310 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~-~  310 (520)
                                                        ..+..+|.+++||+++++++ +.+.+.+|+++++.||+||+++. +
T Consensus       207 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~  252 (437)
T 2y27_A          207 ----------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGV  252 (437)
T ss_dssp             ----------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEE
T ss_pred             ----------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCee
Confidence                                              01123488999999999987 45556789999999999998433 3


Q ss_pred             eccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          311 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       311 ~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      +......  ....+.+.+++.++|+|+++++++|+|+.|||+++|            .|+++| .++||+|||+|+++++
T Consensus       253 ~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~  317 (437)
T 2y27_A          253 ASECVET--KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPG  317 (437)
T ss_dssp             EECCTTT--CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCSSS-CCCSEEEEEEECEECC
T ss_pred             EEecCCC--CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcCCc-hhheeecCCEEEEeCC
Confidence            3322211  112566778999999998889999999999999996            345566 4799999999999972


Q ss_pred             CCCCCccccCcEE-----EEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCC----CceeEEEEEcChHHHH
Q 010017          391 HSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDKEEVL  461 (520)
Q Consensus       391 ~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~~~~~  461 (520)
                               +|++     +|.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+    .+.+.++|+++++.  
T Consensus       318 ---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~--  385 (437)
T 2y27_A          318 ---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET--  385 (437)
T ss_dssp             ---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT--
T ss_pred             ---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc--
Confidence                     3764     899999999997 99999999999999999999999988853    35688888887531  


Q ss_pred             HHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017          462 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                                 .....+.+++++++++.|+.+..    ....|.+++  +.+... ||+
T Consensus       386 -----------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi  428 (437)
T 2y27_A          386 -----------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKA  428 (437)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSC
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccc
Confidence                       00113457899999999999862    124677774  666666 886

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.7e-42  Score=358.56  Aligned_cols=246  Identities=23%  Similarity=0.317  Sum_probs=196.7

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCC------CcEEEEEcChhhHHHHHH-hhhhhhcCe
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRGI  151 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~------~d~~l~~lpl~h~~g~~~-~~~~~~~G~  151 (520)
                      ....++|+++|+|||||||.||||++||+++.+++..+...++...      +|++++++|++|.+++.. .+.++..|+
T Consensus       178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  257 (480)
T 3t5a_A          178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY  257 (480)
T ss_dssp             CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred             CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence            3457899999999999999999999999999988888777777766      899999999999999765 567789999


Q ss_pred             eEEec-------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCccc
Q 010017          152 ELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  224 (520)
Q Consensus       152 ~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (520)
                      ++++.       ++..+++.++++++| +..+|+++..++......    ..                            
T Consensus       258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~----~~----------------------------  304 (480)
T 3t5a_A          258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD----DD----------------------------  304 (480)
T ss_dssp             CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----GG----------------------------
T ss_pred             ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----cc----------------------------
Confidence            98874       567889999999999 889999887775431000    00                            


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC------Cee
Q 010017          225 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VKV  297 (520)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g------~~v  297 (520)
                                                             .....+..+|.+++||+++++++ +++.+.++      +.+
T Consensus       305 ---------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~  345 (480)
T 3t5a_A          305 ---------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVI  345 (480)
T ss_dssp             ---------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGE
T ss_pred             ---------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhc
Confidence                                                   00022344599999999999987 66666663      369


Q ss_pred             eecccccccccceeccCCCC-------------------------CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEE
Q 010017          298 QVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK  352 (520)
Q Consensus       298 ~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~  352 (520)
                      ++.||+||++..++......                         ...+++|+|++ ++++|+|+++++++|+|++|||+
T Consensus       346 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~  424 (480)
T 3t5a_A          346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIW  424 (480)
T ss_dssp             EEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEE
T ss_pred             cccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEE
Confidence            99999999988776654321                         23468999999 99999998889999999999999


Q ss_pred             EecCCCCccccCCchhhhcccC-----------CCCccccCceeeeccCCCCCCccccCcEEEEEcc
Q 010017          353 VRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR  408 (520)
Q Consensus       353 v~gp~v~~GY~~~~~~t~~~f~-----------~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR  408 (520)
                      |+||++++|||++|++|+++|+           .+|||+|||+|+++           ||+|+|+||
T Consensus       425 v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR  480 (480)
T 3t5a_A          425 VHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR  480 (480)
T ss_dssp             EESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred             EeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence            9999999999999999999995           56899999999985           699999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=5.1e-32  Score=272.11  Aligned_cols=244  Identities=18%  Similarity=0.150  Sum_probs=172.9

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHh---hhhcCCCCCcEEEEEcCh-hhHHHHHHhhhhhhcCeeEEe
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMY  155 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~lpl-~h~~g~~~~~~~~~~G~~~~~  155 (520)
                      ..+++|+++|+|||||||.||||++||+++.+....+   ...+++.++|++++++|+ +|.+++...+.++..|+.++.
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            3478999999999999999999999999998877743   345677899999999999 999999887777888884444


Q ss_pred             c--chh-----------------------hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Q 010017          156 T--AVR-----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF  210 (520)
Q Consensus       156 ~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (520)
                      .  ++.                       .+++.|+++++|++.++|+++..|++.....                    
T Consensus       167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------  226 (369)
T 3hgu_A          167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------  226 (369)
T ss_dssp             CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH--------------------
T ss_pred             ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh--------------------
Confidence            2  344                       6777999999999999999998886531100                    


Q ss_pred             HHHHHHHHhhCcccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHH
Q 010017          211 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF  289 (520)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~  289 (520)
                                                                             ...+..+|.+++||+++++++ +++
T Consensus       227 -------------------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~  251 (369)
T 3hgu_A          227 -------------------------------------------------------LQMKQSLAQITLGGTELNLDEIKFI  251 (369)
T ss_dssp             -------------------------------------------------------HHHHHHCSEEEEESSCCCHHHHHHH
T ss_pred             -------------------------------------------------------ccccCCeeEEEECCccCCHHHHHHH
Confidence                                                                   000111388999999999987 566


Q ss_pred             H-HHh-CCeeeecccccccccceeccCCCCCCccccccC------cCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCcc
Q 010017          290 Y-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG  361 (520)
Q Consensus       290 ~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~~------~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~G  361 (520)
                      . +.| ++++++.||+||+++++..++.     .++|++      .|+++++|+|+++++++|+|+.|||+|++.     
T Consensus       252 ~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l-----  321 (369)
T 3hgu_A          252 ASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHL-----  321 (369)
T ss_dssp             HHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEE-----
T ss_pred             HHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEc-----
Confidence            6 667 8999999999998866543221     148888      999999999987899999999999999953     


Q ss_pred             ccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCce
Q 010017          362 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  419 (520)
Q Consensus       362 Y~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  419 (520)
                             +++.+  --+|+|||++...+..+ +..+.....+..++|.++..++ .|.
T Consensus       322 -------~~~~~--l~ry~tgD~~~~~~~~~-g~~~d~~~~v~~~~~~~~~~~i-~gv  368 (369)
T 3hgu_A          322 -------SPWAF--YPRVAERDTAIRLPGVS-GFAGDRLADIEPLKISEGRKVI-EGV  368 (369)
T ss_dssp             -------ETTEE--EEEEEEEEEEEEECCST-TCSSCEEEEEEECC------------
T ss_pred             -------Ccccc--cccccCCceEEEecCCC-CCcCcccccceeccccCCCcee-eec
Confidence                   23333  12499999998765332 1111112345667888877775 564

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.05  E-value=5e-10  Score=90.55  Aligned_cols=93  Identities=13%  Similarity=0.029  Sum_probs=63.3

Q ss_pred             ccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCCcCCccccChHHH
Q 010017          407 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT  482 (520)
Q Consensus       407 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (520)
                      .|.||||++ +|+||+|.|||++|.+||+|.++++++.+++    .+.++|+..+..             .......+++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l   66 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL   66 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence            489999997 9999999999999999999999999997543    455777765430             0011234567


Q ss_pred             HHHHHHHHHHHhccCCCccccEEEec--CCCCcCCCcc
Q 010017          483 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  518 (520)
Q Consensus       483 ~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~g~l  518 (520)
                      .+.+++.+..+..-   . .++.+++  +.+.. +||+
T Consensus        67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi   99 (109)
T 3lax_A           67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA   99 (109)
T ss_dssp             HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred             HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence            77777777766522   1 2466765  45654 6886

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.95  E-value=1e-08  Score=106.07  Aligned_cols=144  Identities=13%  Similarity=0.172  Sum_probs=88.0

Q ss_pred             eeEEecCCCCChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCCC--------
Q 010017          273 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN--------  340 (520)
Q Consensus       273 r~~~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~~--------  340 (520)
                      .+++.||  +.+-...+...+ +.+++ ..|++||+- +.....+.+. ++..+. .+|+ .-++.++.++.        
T Consensus       308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~-p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~  383 (609)
T 4b2g_A          308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSK-PSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS  383 (609)
T ss_dssp             EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSC-GGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred             EEEccCC--hHHHHHHHHHHcCCCccccCccccccee-eeeecCCCCC-cccCceeecCCcEEEEEEeccccccccccCC
Confidence            3445555  333334444433 57776 899999963 3222222211 112221 2222 45566643321        


Q ss_pred             -------CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceE
Q 010017          341 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI  413 (520)
Q Consensus       341 -------~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i  413 (520)
                             ..++.|+.+||+++..+   |+|.              |++||+.+++...      +....+.|+||.||+|
T Consensus       384 ~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~------~~~p~i~~~gR~~~~l  440 (609)
T 4b2g_A          384 PPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFH------NSAPQFHFVRRKNVLL  440 (609)
T ss_dssp             CCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEE------TTEEEEEEEEETTCCB
T ss_pred             CCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecC------CCCcEEEEEEecCCeE
Confidence                   34778999999998432   4432              9999999887310      0036899999999999


Q ss_pred             EeCCceeeccHHHHHHHhc------Cc--ccceEEEEeC
Q 010017          414 VLSTGENVEPLELEEAALR------SS--LIRQIVVIGQ  444 (520)
Q Consensus       414 ~~~~G~~v~p~eIE~~l~~------~p--~V~~~~Vvg~  444 (520)
                      ++ .|++|++.+||++|.+      ..  .|.|..++..
T Consensus       441 ~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d  478 (609)
T 4b2g_A          441 SI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFAD  478 (609)
T ss_dssp             CS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEE
T ss_pred             Ec-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecC
Confidence            96 8999999999999973      12  3556666543

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.92  E-value=4.3e-08  Score=101.35  Aligned_cols=132  Identities=14%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             eeEEecCCCCChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCCC--------
Q 010017          273 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAETN--------  340 (520)
Q Consensus       273 r~~~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~~--------  340 (520)
                      .+++.||  +.+-...+...+ +.+++ ..|++||+- +.....+.+ .++..+. .+|+ ..++.++.+..        
T Consensus       303 ~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l  378 (581)
T 4eql_A          303 ETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLC-KPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDL  378 (581)
T ss_dssp             EEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTS-CGGGCCEEECTTSSEEEEEECSTTCCSSCEEG
T ss_pred             EEEcCCC--hHHHHHHHHHHcCCCccccCccccccce-eeeccCCCC-CcccCceeecCCcEEEEEEeccccCCCcEeCH
Confidence            4555566  333334444434 67777 899999952 222222211 1112222 1222 45566653221        


Q ss_pred             CcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCcee
Q 010017          341 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN  420 (520)
Q Consensus       341 ~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~  420 (520)
                      ..+..|+.+||+++..+   |.|              -|++||+.++.....      ....+.|+||.||+|++ .|++
T Consensus       379 ~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~------~~p~i~f~gR~~~~l~~-~Gek  434 (581)
T 4eql_A          379 EDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYN------NAPQFKFVRRENVVLSI-DSDK  434 (581)
T ss_dssp             GGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEET------TEEEEEEEEETTEEECS-SSCC
T ss_pred             HHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCC------CCcEEEEEEecCCEEEe-eeeE
Confidence            24678999999998442   222              199999998874100      02679999999999996 8999


Q ss_pred             eccHHHHHHHhc
Q 010017          421 VEPLELEEAALR  432 (520)
Q Consensus       421 v~p~eIE~~l~~  432 (520)
                      +++.+||++|.+
T Consensus       435 l~~~~v~~al~~  446 (581)
T 4eql_A          435 TNEEDLFKAVSQ  446 (581)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999999985

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.87  E-value=6.9e-08  Score=99.57  Aligned_cols=136  Identities=10%  Similarity=0.057  Sum_probs=83.6

Q ss_pred             ChhHHHHHHHh-CCeee-ecccccccccceeccCCCCCCcccccc-CcCC-eEEEEEeCCC----------CCcCCCCCc
Q 010017          283 PMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAET----------NEVLPAGSK  348 (520)
Q Consensus       283 ~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~ivd~~~----------~~~~~~g~~  348 (520)
                      .+-...+...+ +.+++ ..|++||+- +.....+.+ .++..+. .+|+ ..++.+..+.          ...++.|+.
T Consensus       316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~-~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~  393 (581)
T 4epl_A          316 EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRL-SPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEE  393 (581)
T ss_dssp             GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCTTS-CTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCE
T ss_pred             HHHHHHHHHHcCCCccccCceecccee-eeeecCCCC-CccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCe
Confidence            33334444444 57777 899999963 222221221 1111221 2232 3445553221          135788999


Q ss_pred             cEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHH
Q 010017          349 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  428 (520)
Q Consensus       349 GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~  428 (520)
                      +||+++..+   |.|              -|++||+.++....+.      ...+.|+||.++++++ .|+++++.+||+
T Consensus       394 YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~------~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~  449 (581)
T 4epl_A          394 YEVVITNYA---GLY--------------RYRLGDVVKVIGFYNN------TPQLKFICRRNLILSI-NIDKNTERDLQL  449 (581)
T ss_dssp             EEEEEESTT---SCS--------------SEEEEEEEEEEEEETT------EEEEEEEEETTCCBCS-SSCCBCHHHHHH
T ss_pred             EEEEEeecc---cee--------------eEEcCCEEEEecccCC------CcEEEEEeecCCeEEe-eeeECCHHHHHH
Confidence            999998442   222              1999999988752110      2578999999999996 899999999999


Q ss_pred             HHhc------Cc--ccceEEEEeC
Q 010017          429 AALR------SS--LIRQIVVIGQ  444 (520)
Q Consensus       429 ~l~~------~p--~V~~~~Vvg~  444 (520)
                      +|.+      ..  .|.|..++..
T Consensus       450 al~~a~~~l~~~~~~l~eft~~~d  473 (581)
T 4epl_A          450 SVESAAKRLSEEKIEVIDFSSYID  473 (581)
T ss_dssp             HHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred             HHHHHHHhhcccCCeEEEEEEecC
Confidence            9974      12  3667766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	520
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-42
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-34
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-05
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-32
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-04
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	9e-24
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-09
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	8e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	5e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-18

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  159 bits (402), Expect = 1e-42
 Identities = 87/493 (17%), Positives = 149/493 (30%), Gaps = 121/493 (24%)

Query: 44  VEEIPVFSYDEIIDLGRESRKAFSDS--NDARKHYKYETIGSDDIATYVYTSGTTGNPKG 101
           VE + V          +E R  +       A   ++ E + ++D    +YTSG+TG PKG
Sbjct: 210 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKG 269

Query: 102 VMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF--IFSRGIELMYTAV 158
           V+ T    L +   +   +     GD +        V   +   +  +      LM+  V
Sbjct: 270 VLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGV 329

Query: 159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 218
            N                      +   + K                 +++  YTA    
Sbjct: 330 PNWPTP----------------ARMCQVVDKH----------------QVNILYTA---- 353

Query: 219 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 278
                       P+ + AL+      I       L +L                    S 
Sbjct: 354 ------------PTAIRALMAEGDKAIEGTDRSSLRIL-------------------GSV 382

Query: 279 GGSLPMH-IDLFYEAIG---VKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEI 332
           G  +     + +++ IG     V   +  TE+   +    P    L  GS   P    + 
Sbjct: 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP 442

Query: 333 KIVDAETNEVLPAGSKGIVKVRGSQ--VMQGYFKNPSATKQALDE--DGWLNTGDIGWIA 388
            +VD E +      ++G + +  S     +  F +    +Q           +GD     
Sbjct: 443 ALVDNEGHPQ-EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501

Query: 389 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 448
                       G   + GR  D + +S G  +   E+E A +    I +  V+G     
Sbjct: 502 ED----------GYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPH-- 548

Query: 449 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP----- 503
                   K + + A     +      E S E     LY E+R W      +IGP     
Sbjct: 549 ------AIKGQAIYAY----VTLNHGEEPSPE-----LYAEVRNW---VRKEIGPLATPD 590

Query: 504 -IHVVDE-PFTVN 514
            +H  D  P T +
Sbjct: 591 VLHWTDSLPKTRS 603

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  133 bits (335), Expect = 3e-34
 Identities = 73/390 (18%), Positives = 139/390 (35%), Gaps = 30/390 (7%)

Query: 102 VMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---V 158
           V+L   NLL  + ++   +        +    P             +  + +   A   +
Sbjct: 115 VLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 159 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 218
                     +        LV  +L + +      S     +    +  ++     +   
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234

Query: 219 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 278
             G        +      +  +    +      P   LA     +     +   +  V G
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVG 294

Query: 279 GGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV-----------LGSVGHPI 327
           G + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G PI
Sbjct: 295 GSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354

Query: 328 NHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 386
               +++ D E   V     + G V+++G  +  GY+ N  AT+ AL  DG+  TGDI  
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 414

Query: 387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG--- 443
                         G + ++ R KD ++ S GE +  ++LE A +    +++  V+    
Sbjct: 415 WDE----------EGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 463

Query: 444 -QDQRRPGAIIVPDKEEVLMAAKRLSIVHA 472
            + Q RP A++VP  E+         ++ A
Sbjct: 464 PKWQERPLAVVVPRGEKPTPEELNEHLLKA 493

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 85  DIATYVYTSGTTGNPKGVMLTHKNLLHQIR--SLYDIVPAENGDKFLSMLPPWHVYERAC 142
                 YT+GTTG PKGV+ +H+ L+      SL D       D  L ++P +HV     
Sbjct: 170 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229

Query: 143 GYFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR 198
            Y     G + +    R                +   VP V+  L   ++         R
Sbjct: 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 289

Query: 199 RVV 201
           R+V
Sbjct: 290 RLV 292

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  128 bits (322), Expect = 2e-32
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 222 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS 281
             L    ++  +L +L D+     +             L+ K   S   + +    G   
Sbjct: 259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIASGGAPL 316

Query: 282 LPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 340
                +   +   +  ++ GYGLTE++  I       +  G+VG  +   E K+VD +T 
Sbjct: 317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG 376

Query: 341 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 400
           + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +              
Sbjct: 377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH-------- 428

Query: 401 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPD 456
               +  R K  I    G  V P ELE   L+   I    V G         P A++V +
Sbjct: 429 --FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE 485

Query: 457 KEEVLMAAKRLSIVHADASELSKEKTI 483
             + +   +   IV   AS+++  K +
Sbjct: 486 HGKTMTEKE---IVDYVASQVTTAKKL 509

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 84  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG 143
             IA  + +SG+TG PKGV L H+    +     D +         ++L     +     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 144 YFIFS------RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 197
           +          R + +           LQ Y+    + VP ++           +  S  
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 198 RRVVA------RALIRISFAYTAFKRIYEGFCLT 225
             + +      + +            I +G+ LT
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 340

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 9e-24
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 289
            S    +ID             L LL           ++   +   S G  +   + + +
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381

Query: 290 YEAIG---VKVQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVL 343
            E IG   + +   Y  TES   +             GS   P    +  ++D  T E L
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 441

Query: 344 -PAGSKGIVKVRGS--QVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRR 398
             + ++G++ V+ +     +  +KN             G+  TGD               
Sbjct: 442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD-------- 493

Query: 399 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIV 454
             G + + GR  D + +S G  +   E+E A +   ++ +  V+G +     +   A +V
Sbjct: 494 --GYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550

Query: 455 PDKEEVLMAA 464
              +     A
Sbjct: 551 LKNKSSWSTA 560

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 9/127 (7%)

Query: 66  FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAEN 124
            ++    + +Y    + S+D    +YTSG+TG PKGV  +    LL  + ++        
Sbjct: 221 ATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ 280

Query: 125 GDKFLSMLPPWHVYER--------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISV 176
            D F +      +             G           Y       D +  ++       
Sbjct: 281 EDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA 340

Query: 177 PLVYETL 183
           P     L
Sbjct: 341 PTALRLL 347

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 93.2 bits (230), Expect = 8e-21
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 17/260 (6%)

Query: 219 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 278
            +G  +   + +P   + L+       + A    L  LA    +      +   +     
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280

Query: 279 GGSLP-MHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 337
           G ++P   ++  ++ +  +    YG TE+   +  R+P      + G       ++I   
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG 340

Query: 338 ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 397
               V       ++         GY   P AT + L +DGW  T D+    P        
Sbjct: 341 VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE------- 392

Query: 398 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AII 453
              G + + GR  D I+   GEN+ P E+E     +  + ++VVIG   +R G    A +
Sbjct: 393 ---GTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448

Query: 454 VPDKEEVLMAAKRLSIVHAD 473
           VP   E L A    +   + 
Sbjct: 449 VPRLGETLSADALDTFCRSS 468

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 90.7 bits (224), Expect = 5e-20
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%)

Query: 240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV 299
             + + I      +  L    V       I   +  ++ G +    +   ++   V    
Sbjct: 247 VKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE-KVTYIN 305

Query: 300 GYGLTESSPVIAARRPTCNVLG---SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 356
            YG TE++        T   +G    +G PI +T+I IVD E  ++   G  G + + G 
Sbjct: 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 364

Query: 357 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 416
            + +GY+K P  T Q   ++ ++  G+  +     +R       G +   GR  + + + 
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFV-PGEKLYKTGDQAR---WLSDGNIEYLGRIDNQVKIR 420

Query: 417 TGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKE 458
            G  VE  E+E   L+   I +  V      Q+Q    A  V +K 
Sbjct: 421 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 465

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.6 bits (213), Expect = 1e-18
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 231 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY 290
           P     LI+     I   +     +        +      +    V G            
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVW-MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 291 EAIGVKVQVGYGLTESSPVIAARRPTCNV-LGSVGHPINHTEIKIVDAETNEVLPAGSKG 349
              G  +Q  +G+ E             + + + G P++  +   V  + +  +  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 350 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 409
            +  RG   ++GY+K       +  EDG+  TGDI  +             G +V+EGRA
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD----------GYIVVEGRA 429

Query: 410 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 465
           KD I    GE V   E+E   L    +    ++    +    R    I+P  E    A  
Sbjct: 430 KDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488

Query: 466 R 466
           +
Sbjct: 489 K 489

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=4.1e-54  Score=460.41  Aligned_cols=334  Identities=18%  Similarity=0.188  Sum_probs=277.6

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHH-HHHhhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~  156 (520)
                      ...+++|+++|+|||||||.||||++||++++.. ...+...+++.++|++++.+|++|++++.. .+.++..|+++++.
T Consensus       247 ~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~  326 (643)
T d1pg4a_         247 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF  326 (643)
T ss_dssp             CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred             CCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence            4567899999999999999999999999997654 444556678999999999999999999876 45678999998863


Q ss_pred             -------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          157 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       157 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                             ++..+++.|+++++|++.++|+++..|.+......                            .         
T Consensus       327 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~----------------------------~---------  369 (643)
T d1pg4a_         327 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI----------------------------E---------  369 (643)
T ss_dssp             CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT----------------------------T---------
T ss_pred             cCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc----------------------------c---------
Confidence                   56789999999999999999999988754211000                            0         


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHh---CCeeeecccccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GVKVQVGYGLTE  305 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~---g~~v~~~YG~TE  305 (520)
                                                          ...+..+|.+++||+++++++ +.+.+.+   ++++++.||+||
T Consensus       370 ------------------------------------~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE  413 (643)
T d1pg4a_         370 ------------------------------------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE  413 (643)
T ss_dssp             ------------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred             ------------------------------------ccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhh
Confidence                                                012334599999999999987 5556666   477999999999


Q ss_pred             cccceeccCCC--CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec--CCCCccccCCchhhhccc--CCCCcc
Q 010017          306 SSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGWL  379 (520)
Q Consensus       306 ~~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f--~~~gw~  379 (520)
                      +++.++...+.  ..+.+++|+|++|++++|+|+ +|+++++|+.|||+|+|  |+++.|||++++.+.+++  ..+|||
T Consensus       414 ~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~  492 (643)
T d1pg4a_         414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  492 (643)
T ss_dssp             GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             ccceEEecCCCccCCCCCccccccCCCEEEEECC-CCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence            98776654432  245689999999999999995 58899999999999999  578999999999888765  348999


Q ss_pred             ccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEc
Q 010017          380 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  455 (520)
Q Consensus       380 ~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~  455 (520)
                      +|||+|++|+          ||+++|+||+||+||. +|++|+|.|||++|.+||.|.+|+|+|.+++    .++|+|++
T Consensus       493 ~TGDl~~~d~----------dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~  561 (643)
T d1pg4a_         493 FSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL  561 (643)
T ss_dssp             EEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             EcCCEEEECC----------CceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEE
Confidence            9999999999          8999999999999996 8999999999999999999999999998653    57899998


Q ss_pred             ChHHHHHHHHHcCCCcCCccccC---hHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          456 DKEEVLMAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +++                ...+   ..+++++++++|+.|+     .++.|.++++.+...+||+
T Consensus       562 ~~~----------------~~~~~~~~~~i~~~~~~~L~~~~-----vP~~i~~v~~lP~T~sGKi  606 (643)
T d1pg4a_         562 NHG----------------EEPSPELYAEVRNWVRKEIGPLA-----TPDVLHWTDSLPKTRSGKI  606 (643)
T ss_dssp             CTT----------------CCCCHHHHHHHHHHHHHHTCGGG-----CCSEEEECSCCCBCTTSCB
T ss_pred             CCC----------------CCCCHHHHHHHHHHHHhhCCccc-----CccEEEEECCCCCCCCcCc
Confidence            764                2222   3478888999888888     4578999999999999986

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.1e-52  Score=441.87  Aligned_cols=395  Identities=23%  Similarity=0.288  Sum_probs=298.5

Q ss_pred             EEEEEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCC
Q 010017            3 VALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG   82 (520)
Q Consensus         3 ~~~vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (520)
                      +.+++ ++++++++.++..+++.++.+++++......        ...++.+.............      ...+.....
T Consensus       121 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  185 (541)
T d1lcia_         121 TVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ--------GFQSMYTFVTSHLPPGFNEY------DFVPESFDR  185 (541)
T ss_dssp             SEEEE-CGGGHHHHHHHHHHCTTCCEEEETTCSSCBT--------TBEEHHHHHHHHSCTTCCTT------TCCCCCCCT
T ss_pred             eEEee-eccccccchhccccccccceeeeecCCcccc--------ccchhhhhhhhhcccccccc------ccCccccCC
Confidence            44454 5788899999988899999999876543221        22344444433221111100      001223446


Q ss_pred             CCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhh---cCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEe---c
Q 010017           83 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---T  156 (520)
Q Consensus        83 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~---~  156 (520)
                      ++++++|+|||||||.||||++||++++.........   ....+++++++++|++|.++....+..+..++..+.   .
T Consensus       186 ~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (541)
T d1lcia_         186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF  265 (541)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred             CCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999999999998766655443   356788999999999999999887777777776665   3


Q ss_pred             chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHH
Q 010017          157 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  236 (520)
Q Consensus       157 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (520)
                      +.......+..+++|.+..+|.++..+.......                                              
T Consensus       266 ~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~----------------------------------------------  299 (541)
T d1lcia_         266 EEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID----------------------------------------------  299 (541)
T ss_dssp             CHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG----------------------------------------------
T ss_pred             ccchhHHHHhhhhccccccCcccccccccccccc----------------------------------------------
Confidence            5677888999999999999999887765421100                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCC-eeeecccccccccceeccC
Q 010017          237 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARR  314 (520)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~~  314 (520)
                                                   ...+..++.+++||++++... ..+.+.++. .++++||+||+++.++...
T Consensus       300 -----------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  350 (541)
T d1lcia_         300 -----------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP  350 (541)
T ss_dssp             -----------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECC
T ss_pred             -----------------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecC
Confidence                                         011223488999999998887 666667764 6899999999998888877


Q ss_pred             CCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCCCCC
Q 010017          315 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  394 (520)
Q Consensus       315 ~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~~~~  394 (520)
                      ......+++|+|+|+++++|+|+|++++++.|+.|||+|+|++++.||+++++.+...+..+|||+|||+|++++     
T Consensus       351 ~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~-----  425 (541)
T d1lcia_         351 EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE-----  425 (541)
T ss_dssp             CC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECT-----
T ss_pred             cccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcC-----
Confidence            777778999999999999999999999999999999999999999999999999999998899999999999998     


Q ss_pred             CccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHcCCC
Q 010017          395 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  470 (520)
Q Consensus       395 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  470 (520)
                           +|.+++.||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.|+|++.++            
T Consensus       426 -----~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~------------  487 (541)
T d1lcia_         426 -----DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG------------  487 (541)
T ss_dssp             -----TCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------
T ss_pred             -----CeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCC------------
Confidence                 8999999999999997 8999999999999999999999999997543    56788888654            


Q ss_pred             cCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          471 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                          ...+.++++++++++|..+..    .++.|.++++.+...+||+
T Consensus       488 ----~~~~~~~l~~~~~~~l~~~~~----~p~~i~~v~~lP~t~~GKi  527 (541)
T d1lcia_         488 ----KTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL  527 (541)
T ss_dssp             ----CCCCHHHHHHHHHHHSCGGGS----CTTEEEEESSCCC-----C
T ss_pred             ----CCCCHHHHHHHHHHhCCcccc----CCcEEEEeCCCCcCCCcCc
Confidence                456788999999999887752    2457888999999999986

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-51  Score=436.98  Aligned_cols=345  Identities=18%  Similarity=0.208  Sum_probs=272.0

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHH-hhhhcCCCCCcEEEEEcChhhHHHHHH-hhhhhhcCeeEEec
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  156 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~d~~l~~lpl~h~~g~~~-~~~~~~~G~~~~~~  156 (520)
                      .+..++|+++|+|||||||.||||+++|++++.+... ....+++.++|++++++|++|++++.. .+.++..|+++++.
T Consensus       234 ~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~  313 (640)
T d1ry2a_         234 TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF  313 (640)
T ss_dssp             CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred             CCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEe
Confidence            3456899999999999999999999999998776544 344678899999999999999999876 45678888877663


Q ss_pred             -------chhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCC
Q 010017          157 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  229 (520)
Q Consensus       157 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (520)
                             ++..+++.|+++++|.+.++|+++..|.+......                                      
T Consensus       314 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  355 (640)
T d1ry2a_         314 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--------------------------------------  355 (640)
T ss_dssp             CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--------------------------------------
T ss_pred             cCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc--------------------------------------
Confidence                   56789999999999999999999877643110000                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhC---Ceeeecccccc
Q 010017          230 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTE  305 (520)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE  305 (520)
                                                         -...+..+|.+++||+++++++ +.+.+.+|   .++++.||+||
T Consensus       356 -----------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te  400 (640)
T d1ry2a_         356 -----------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE  400 (640)
T ss_dssp             -----------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred             -----------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccc
Confidence                                               0012344599999999999987 55666665   56999999999


Q ss_pred             cccceeccCCC---CCCccccccCcCCeEEEEEeCCCCCcC-CCCCccEEEEec--CCCCccccCCchhhhccc--CCCC
Q 010017          306 SSPVIAARRPT---CNVLGSVGHPINHTEIKIVDAETNEVL-PAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDG  377 (520)
Q Consensus       306 ~~~~~~~~~~~---~~~~~~~G~~~~~~~v~ivd~~~~~~~-~~g~~GEl~v~g--p~v~~GY~~~~~~t~~~f--~~~g  377 (520)
                      ++.........   ..+.+++|.|+|+++++|+|+++++.+ +.++.|||++++  |+++.|||+||+.|.++|  +.+|
T Consensus       401 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~g  480 (640)
T d1ry2a_         401 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG  480 (640)
T ss_dssp             TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred             cccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCC
Confidence            98766554332   245689999999999999998777654 456679999998  689999999999999887  3469


Q ss_pred             ccccCceeeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEE
Q 010017          378 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAII  453 (520)
Q Consensus       378 w~~TGDlg~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~v  453 (520)
                      ||+|||+|++|+          ||+++|+||+||+||. +|++|+|.|||++|.+||.|.+|+|+|.+++    .+.|+|
T Consensus       481 w~~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~V  549 (640)
T d1ry2a_         481 YYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV  549 (640)
T ss_dssp             SEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEE
T ss_pred             eEEcCCceeECC----------CCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEE
Confidence            999999999999          8999999999999995 8999999999999999999999999998654    578999


Q ss_pred             EcChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          454 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       454 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                      +++++.....+...      .-..-.++++++++++|+.|+     .++.|.++++.+...|||+
T Consensus       550 v~~~~~~~~~~~~~------~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  603 (640)
T d1ry2a_         550 VLKNKSSWSTATDD------ELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI  603 (640)
T ss_dssp             EEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred             EEcCCCCccccchH------HHHHHHHHHHHHHHhhCCCCC-----CceEEEEeCCCCCCCCcCc
Confidence            98765211110000      000113567777888888887     5578999999999999997

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-50  Score=425.73  Aligned_cols=380  Identities=24%  Similarity=0.359  Sum_probs=263.8

Q ss_pred             EEcChhhHHHHHHHhccCCCceEEEEEcCCCCCCCCCccCCccceeHHHHHHhchhhhcccCCcchhhcccccCCCCCCC
Q 010017            6 AVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD   85 (520)
Q Consensus         6 vv~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (520)
                      ++.+......+.+.....+.++.+++.......         ........   .    ...         .......+++
T Consensus       116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~----~~~---------~~~~~~~~~~  170 (534)
T d1v25a_         116 LLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE---------GYLAYEEA---L----GEE---------ADPVRVPERA  170 (534)
T ss_dssp             EEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT---------TCEEHHHH---C----CSC---------CCCCCCCTTS
T ss_pred             ccccchhhhhHHHHhhcccccceeEEeeccccc---------cccccccc---c----ccc---------ccccccccCC
Confidence            344566777777777777778777764432211         00111110   0    000         1123457899


Q ss_pred             EEEEEecCCCCCCchhhhhchHHHHHHHHHhh--hhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEec----chh
Q 010017           86 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVR  159 (520)
Q Consensus        86 ~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~--~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~----~~~  159 (520)
                      +++|+|||||||.||||+++|.+++.......  ..+....+|++++++|++|.+++...+..+..|++.+..    ++.
T Consensus       171 ~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  250 (534)
T d1v25a_         171 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPA  250 (534)
T ss_dssp             EEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHH
T ss_pred             cEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeecccccccc
Confidence            99999999999999999999999987654433  344567889999999999999998888887777777663    577


Q ss_pred             hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchhHHHHHH
Q 010017          160 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  239 (520)
Q Consensus       160 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (520)
                      .+...+.++++|.+.++|+++..+.......                                                 
T Consensus       251 ~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~-------------------------------------------------  281 (534)
T d1v25a_         251 SLVELFDGEGVTFTAGVPTVWLALADYLEST-------------------------------------------------  281 (534)
T ss_dssp             HHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             ccchhhhhccccccccCchhhhhhhhhhccc-------------------------------------------------
Confidence            8899999999999999999988776542211                                                 


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceeccCCCC--
Q 010017          240 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC--  317 (520)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--  317 (520)
                                                ...+..+|.+++||++++....++++.+|.++++.||+||++..+.......  
T Consensus       282 --------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~  335 (534)
T d1v25a_         282 --------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHL  335 (534)
T ss_dssp             --------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGG
T ss_pred             --------------------------cccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccceeecccCccc
Confidence                                      1123345899999999999987778888999999999999998877554321  


Q ss_pred             ---------CCccccccCcCCeEEEEEeCCCCCcCCC--CCccEEEEecCCCCccccCCchhhhcccCCCCccccCceee
Q 010017          318 ---------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  386 (520)
Q Consensus       318 ---------~~~~~~G~~~~~~~v~ivd~~~~~~~~~--g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~  386 (520)
                               ...+++|+|+||++++|+|+ +++.++.  |+.|||+++||+++.|||++|+.|++.|..+|||+|||+|+
T Consensus       336 ~~~~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~  414 (534)
T d1v25a_         336 ESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV  414 (534)
T ss_dssp             TTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEE
T ss_pred             cccCccccccccccceeccCCcEEEEECC-CCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeE
Confidence                     12468999999999999995 4666665  78999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHH
Q 010017          387 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  462 (520)
Q Consensus       387 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~  462 (520)
                      +++          ||.+++.||+||+||. +|++|+|.|||++|.+||.|.||+|+|.+++    .+.|+|+++.+    
T Consensus       415 ~~~----------~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~----  479 (534)
T d1v25a_         415 WDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE----  479 (534)
T ss_dssp             ECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred             ECC----------CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCC----
Confidence            998          8999999999999996 8999999999999999999999999997543    46777777643    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          463 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                  ....++.++.++++.|+.|+     .++.|.++++.+...+||+
T Consensus       480 ------------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~lP~t~~GKi  518 (534)
T d1v25a_         480 ------------KPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF  518 (534)
T ss_dssp             --------------------------CCCTTT-----SCSBC--------------
T ss_pred             ------------CCCHHHHHHHHHHhcCCcCC-----CccEEEEECCCCCCCCccc
Confidence                        12223333344666676666     5577899999999999986

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=7.2e-46  Score=387.34  Aligned_cols=322  Identities=22%  Similarity=0.243  Sum_probs=264.6

Q ss_pred             CCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhhhhhcCeeEEecc--
Q 010017           80 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--  157 (520)
Q Consensus        80 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~~~~~G~~~~~~~--  157 (520)
                      +..++|+++|+|||||||.||+|++||.++..........++...+|++++.+|++|.+++...+.++..|+++++..  
T Consensus       162 p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  241 (514)
T d1amua_         162 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD  241 (514)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccc
Confidence            446899999999999999999999999999999999888999999999999999999999988888888888887643  


Q ss_pred             ----hhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          158 ----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       158 ----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                          ....++.+..+.++.+..+|.......                                                 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  272 (514)
T d1amua_         242 TINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------------------------  272 (514)
T ss_dssp             HHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------------------------------------------
T ss_pred             cccchhhhhhhhhhhhcccccceeeeccccc-------------------------------------------------
Confidence                344567778888888888775432110                                                 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhHHHHHHHhCCeeeecccccccccceecc
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  313 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  313 (520)
                                                      ...+..++.+++||+++++++...... ++.+++.||+||++..++..
T Consensus       273 --------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~  319 (514)
T d1amua_         273 --------------------------------PERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW  319 (514)
T ss_dssp             --------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred             --------------------------------ccccccccEEEEecccCCHHHhhhhcc-ceeEEEeeccccCceeeeec
Confidence                                            012233488899999998887433222 67899999999998876654


Q ss_pred             CCCC---CCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhccc------CCCCccccCce
Q 010017          314 RPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL------DEDGWLNTGDI  384 (520)
Q Consensus       314 ~~~~---~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f------~~~gw~~TGDl  384 (520)
                      ....   ...++.|.+.++..+.+.| +++++++.|+.|||+|+||++++|||++|+.+.+.|      +.+|||+|||+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~  398 (514)
T d1amua_         320 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  398 (514)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             cccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCE
Confidence            4332   3346788999999999999 568999999999999999999999999999998877      34789999999


Q ss_pred             eeeccCCCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHH
Q 010017          385 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  460 (520)
Q Consensus       385 g~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~  460 (520)
                      |++|+          ||+++|.||+||+|++ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.|+|++++   
T Consensus       399 g~~d~----------~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~---  464 (514)
T d1amua_         399 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK---  464 (514)
T ss_dssp             EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred             EEECC----------CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCC---
Confidence            99999          8999999999999997 8999999999999999999999999997543    6778888863   


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          461 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                                     ..+.++++++++++|+.|+     ++..|.++++.+...+||+
T Consensus       465 ---------------~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~lP~t~~GKi  502 (514)
T d1amua_         465 ---------------HIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKI  502 (514)
T ss_dssp             ---------------CCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSB
T ss_pred             ---------------CCCHHHHHHHHHhhCCccc-----CceEEEEeCCCCCCCCcCh
Confidence                           3567899999999998887     5578999999999999986

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.2e-45  Score=385.36  Aligned_cols=332  Identities=19%  Similarity=0.285  Sum_probs=275.0

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCCCCCcEEEEEcChhhHHHHHHhhh--hhhcCeeEEe-
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF--IFSRGIELMY-  155 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~lpl~h~~g~~~~~~--~~~~G~~~~~-  155 (520)
                      ....++|+++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+++...+.  ....|.+++. 
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~  256 (536)
T d1mdba_         177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (536)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccccccccc
Confidence            3567899999999999999999999999999999998888899999999999999999999765333  3445666666 


Q ss_pred             --cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCchh
Q 010017          156 --TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  233 (520)
Q Consensus       156 --~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (520)
                        +++..+...+++++++.+..+|..+..+.......                                           
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  293 (536)
T d1mdba_         257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------  293 (536)
T ss_dssp             SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred             CCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc-------------------------------------------
Confidence              36788999999999999999998887664432110                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeecccccccccceec
Q 010017          234 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  312 (520)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  312 (520)
                                                      ...+..++.+++||+++++.. .++.+.+|...+..|+.+|.+.....
T Consensus       294 --------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (536)
T d1mdba_         294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR  341 (536)
T ss_dssp             --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccc
Confidence                                            011223488999999998887 56667789999999999997655544


Q ss_pred             cCCC-CCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEecCCCCccccCCchhhhcccCCCCccccCceeeeccCC
Q 010017          313 RRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  391 (520)
Q Consensus       313 ~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~gp~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~~  391 (520)
                      .... ....+++|.|+++....+++.+++++++.|+.|||+++|+.++.||+++++.+...+..+|||+|||++++++  
T Consensus       342 ~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~--  419 (536)
T d1mdba_         342 LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR--  419 (536)
T ss_dssp             TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred             cccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccC--
Confidence            3322 2345788999876655566667899999999999999999999999999999999999999999999999999  


Q ss_pred             CCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHHc
Q 010017          392 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  467 (520)
Q Consensus       392 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~  467 (520)
                              ||++++.||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.|+|++.++         
T Consensus       420 --------dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~---------  481 (536)
T d1mdba_         420 --------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE---------  481 (536)
T ss_dssp             --------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS---------
T ss_pred             --------CCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC---------
Confidence                    8999999999999996 8999999999999999999999999997543    46788887642         


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          468 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ..+.++++++++++ |+.|+     .++.|.++++.+...+||+
T Consensus       482 --------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  520 (536)
T d1mdba_         482 --------APKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKV  520 (536)
T ss_dssp             --------CCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCB
T ss_pred             --------CCCHHHHHHHHHhcCCCcCc-----CccEEEEECCCCcCCCcCc
Confidence                    35678899999875 77777     5578999999988899997

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=8.7e-41  Score=346.65  Aligned_cols=333  Identities=20%  Similarity=0.277  Sum_probs=264.5

Q ss_pred             CCCCCCCEEEEEecCCCCCCchhhhhchHHHHHHHHHhhhhcCC--CCCcEEEEEcChhhHHHHHHh-hhhhhcCeeEEe
Q 010017           79 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY  155 (520)
Q Consensus        79 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~--~~~d~~l~~lpl~h~~g~~~~-~~~~~~G~~~~~  155 (520)
                      ...+++++++++|||||||.||+|+++|+++.+.+......+..  ...+++++.+|++|.++.... +.+...++.++.
T Consensus       148 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  227 (503)
T d3cw9a1         148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV  227 (503)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEE
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccc
Confidence            35678999999999999999999999999999888776665443  456899999999888877654 344455555555


Q ss_pred             ---cchhhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHhhCcccccCCCCch
Q 010017          156 ---TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  232 (520)
Q Consensus       156 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (520)
                         .++..+...+..++++.+..+|..+..+.........                                        
T Consensus       228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  267 (503)
T d3cw9a1         228 VEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS----------------------------------------  267 (503)
T ss_dssp             CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT----------------------------------------
T ss_pred             ccccChHHhhhhhhhceeeccccccccccccccccccccc----------------------------------------
Confidence               3678889999999999999999988766443211100                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceeEEecCCCCChhH-HHHHHHhCCeeeeccccccccccee
Q 010017          233 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  311 (520)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  311 (520)
                                                       ...+..+|.+++||++++++. ..+...++..+.+.||+||++..+.
T Consensus       268 ---------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~  314 (503)
T d3cw9a1         268 ---------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLY  314 (503)
T ss_dssp             ---------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEE
T ss_pred             ---------------------------------cccccceEEEEeccccccccccccccccccccccccccccccceeee
Confidence                                             011223599999999999886 5566677889999999999987777


Q ss_pred             ccCCCCCCccccccCcCCeEEEEEeCCCCCcCCCCCccEEEEec-CCCCccccCCchhhhcccCCCCccccCceeeeccC
Q 010017          312 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  390 (520)
Q Consensus       312 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~g~~GEl~v~g-p~v~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~  390 (520)
                      ..........+.+.+.+.....+. .+.++.++.|+.|++.+.+ +....||+++++.|++.| .+|||+|||+|++++ 
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~-  391 (503)
T d3cw9a1         315 MRQPKTGTEMAPGFFSEVRIVRIG-GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP-  391 (503)
T ss_dssp             EESCSSSSEEBCCTTCCEEEECTT-SCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-
T ss_pred             eccccccccccccccccceeeeee-cccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceeccccccccc-
Confidence            665544444445555444444443 3678899999999887775 577788999999999998 589999999999999 


Q ss_pred             CCCCCccccCcEEEEEccccceEEeCCceeeccHHHHHHHhcCcccceEEEEeCCCc----eeEEEEEcChHHHHHHHHH
Q 010017          391 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  466 (520)
Q Consensus       391 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~  466 (520)
                               ||.|+++||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.|+|+++.+        
T Consensus       392 ---------dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~--------  453 (503)
T d3cw9a1         392 ---------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG--------  453 (503)
T ss_dssp             ---------TSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------
T ss_pred             ---------CCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCC--------
Confidence                     8999999999999997 8999999999999999999999999997543    57899998754        


Q ss_pred             cCCCcCCccccChHHHHHHHH-HHHHHHhccCCCccccEEEecCCCCcCCCcc
Q 010017          467 LSIVHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  518 (520)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~i~~~~~~~~~~~~~~g~l  518 (520)
                              ...+.++++++++ +.|+.|+     +++.|.++++.+...+||+
T Consensus       454 --------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GKi  493 (503)
T d3cw9a1         454 --------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV  493 (503)
T ss_dssp             --------CCCCHHHHHHHHHHSSSCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             --------CCCCHHHHHHHHHhcCCCCCC-----CccEEEEECCCCcCCCcCc
Confidence                    4567889999886 4577777     5578999999999999996